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DMR.combine<-function( DM.type, regions, chr.DM.status.matrix, raw.CG, distance.threshold, num.CG.between, posterior.threshold, empty.CG) { # This function is used to further combine small regions generated from chr.DM.region.by.CG.ver3. It is called by DM.region.combine.ver2(). # 1) DM.type, the type of DM ...
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context("Configuration File") test_that("A simple configuration file is parsed correctly", { verbose = T config_filename <- "test-config_file__analysis_configuration.json" configuration <- load_config_file(config_filename, verbose=verobse) configuration <- initialize_output_dir(configuration, verbose) db_engin...
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library(rvest) orders = read.csv("korean10146.shopee-order.csv") orders = orders[,-c(1,2,3,4,11,12,13,17)] as.character.Date(orders$訂單成立時間) #排序 orders = orders[order(orders$訂單成立時間),] #取出寄送方式當作類別 categories = unique(orders$寄送方式) %>% as.vector() #產品 products = c("養樂多軟糖", "怪獸", "火雞辣拌麵", ...
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library(shiny) fluidPage( titlePanel(h3("Plotting iris dataset using render plot function", align="center")), sidebarLayout( sidebarPanel( selectInput("var", "Select the variable name from iris data set", choices = c("Sepal.Length"=1, "Sepal.Width"=2, "Petal.Length"=3, "Petal.Width"=4)), br(), ...
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library(stringr) plant_families <- read.csv(file="Plant_families_for_R.csv") ##Getting information about distribution of plant characteristics## ################################################################### #What proportion of plant families are woody? prop <- nrow(subset(plant_families, habit == "woody"))/(nro...
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arkBtc <- function (arkEur, btcEur) { arkEur / btcEur } binanceFee <- 0.1 bitfinexFee <- 0.1 bl3pFee <- 0.25 # + 0.01€ per order cossFee <- 0.2 krakenFee <- 0.16 livecoinFee <- 0.18 sell <- function (price, amount, fee = krakenFee) { (100 - fee) / 100 * price * amount } buy <- function (price, amount, fee = krak...
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Matern52<-function(distances){ return = (1+sqrt(5)*distances+5/3*distances^2)*exp(-sqrt(5)*distances) # OK } ### Calcule de la dérivé pour amméliorrer l'optimisaton Matern52der<-function(x){ return = (sqrt(5)+5/3*x)*exp(-sqrt(5)*x) + sqrt(5)*(1+sqrt(5)*x+5/3*x^2)*exp(-sqrt(5)*x) # OK } covMatern <- function(z,y...
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DESBED = NULL; DESBED_01 = NULL; DESBED_02 = NULL; DESBED_03 = NULL DESBED_04 = NULL; DESBED_05 = NULL m = length(y_trainData) n = length(y_allData) for (j in (m+1):n){#j=m+1 allCandidates = X_allData # calcula a distMin 01 distVector = NULL distMin = 1e10 distMinIndex = NULL for (i in 1:m){ #i=1 ...
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library(maps) library(mapdata) library(ggmap) library(dplyr) setwd("~/MEGA/TravelersLab/Parliamentary\ Travel") # maps english boroughs qmplot(long, lat, pBoroughs, maptype="toner-background", data = pBoroughs, color = I("red"), zoom = 7, color = TRUE) # Saves burgess plot ggsave("./figures/burgessplot.png") ...
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# This is an R script to read in # a dataset for each species # and make a ggridges plot by month # and export that ggridges plot to a folder # and at the same time make a small dataframe of # species-urban scores by month # and a species-urban scores by day # the RDS files were too large to push all of them # so I pus...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/get_childCodeIds.R, R/get_descendentCodeIds.R \name{get_childCodeIds} \alias{get_childCodeIds} \alias{get_descendentCodeIds} \title{Get the code identifiers a code's descendents} \usage{ get_childCodeIds( x, parentCodeId, retu...
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library(data.table) library(dplyr) library(readr) # Load vector of patents into memory, this will be indexed against to produce adjacency matrix. # Using data.table package to produce a vector key for binary search. pat_index <- read_csv("../DataFiles/Cleaned/patent_cat.csv") pat_index <- data.table(pat_index, key ...
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PlotAccentDistribution = function(v,m.range=NA){ dat = corpora %>% filter(verse==v) %>% mutate(meas = beatIndex %/% 4) if(!is.na(m.range[1])){ dat = dat %>% filter(meas %in% m.range) } BIs = dat %>% filter(accent==1) %>% .[["beatIndex"]] %>% mod(4) tab = table(c(BIs,seq(0,3.75,.25)))-1 names(t...
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#Q1 heart_up=function(x){ sqrt(1-(abs(x)-1)^2) } heart_lo=function(x){ acos(1-abs(x))-pi } x=seq(-2,2,0.05) # plot(x,heart_lo(x),ylim=c(heart_lo(0),1),type='l') # lines(x,heart_up(x)) n=100000 machine_gun=function(n){ up_bound=max(heart_up(x)) lo_bound=min(heart_lo(x)) bullet.x=runif(n,-2,2) bullet.y=runif(n,lo_...
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fa_unicode <- structure(c("\uf042", "\uf170", "\uf037", "\uf039", "\uf036", "\uf038", "\uf0f9", "\uf13d", "\uf17b", "\uf209", "\uf103", "\uf100", "\uf101", "\uf102", "\uf107", "\uf104", "\uf105", "\uf106", "\uf179", "\uf187", "\uf1fe", "\uf0ab", "\uf0a8", "\uf01a", "\uf19...
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library(EcoGenetics) ### Name: eco.NDVI.post ### Title: Postprocessing for NDVI and MSAVI2 temporal series of Landsat 5 ### and 7 ### Aliases: eco.NDVI.post ### ** Examples ## Not run: ##D require(raster) ##D ##D data(tab) ##D data(eco3) ##D temp <- list() ##D ##D # we create 4 simulated rasters for the data i...
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# Calculate per-treatment count control summary statistics. # # Parameters # ---------- # count_control_beakers: data.frame # Data frame of per-beaker larval counts # # Returns # ------- # data.frame # A data frame with a row for each treatment (per experiment). summarize_count_control <- function(count_control_bea...
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library(caret) library(Hmisc) library(data.table) library(kernlab) library(subselect) library(plyr) library(binhf) library(fBasics) library(lattice) require(xgboost) require(methods) getBasePath = function (type = "data") { ret = "" base.path1 = "" base.path2 = "" if(type == "data") { base.path1 = "C:/d...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/iMUBAC.R \docType{package} \name{iMUBAC} \alias{iMUBAC} \alias{package-iMUBAC} \title{iMUBAC: Integration of Multi-Batch Cytometry datasets.} \description{ High-dimentional cytometry, including spectral flow cytometry and mass cytometry (CyTO...
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#' @name afrilandcover #' @aliases afrilandcover #' @title landcover raster for Africa, categorical, 20km resolution #' #' @description a \code{raster} object storing the majority landcover in 2019 for all 20km squares in Africa. #' Categorical, 20km resolution from [MODIS](https://lpdaac.usgs.gov/products/mcd12c1v006/...
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\name{read.resp} \alias{read.resp} \title{Read responses from a file} \usage{ read.resp(file, na = ".") } \arguments{ \item{file}{File name} \item{na}{The symbol used to represent missing data} } \value{ A matrix, typically of zeroes and ones, representing the correct or wrong responses given by persons (row...
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get_stereotype <- function(ds, dist = dist) { # print(str(ev[[1]])) # stop() if (!any(ds$event_type)){ ster <- amatch(ds$EVTYPE, dict, maxDist = dist) if (!any(is.na(ster))){ # browser() ds$EVTYPE <- dict[ster] ds$event_type <- T } } return...
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#' @title Parse results from a Colony run #' #' @description Parse the monitoring information and final best configuration #' for a Colony run #' @param file basename of the output file name given to Colony #' @param dir directory where the run took place #' #' @return A list with two elements: \code{run} with the mo...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/import_data.R \name{importGWASCatalogSummary} \alias{importGWASCatalogSummary} \title{Import GWAS Catalog summary stats} \usage{ importGWASCatalogSummary(summary_path) } \description{ Import GWAS Catalog summary stats }
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\name{filterWideDF} \alias{filterWideDF} \title{Filter the wide dataframe by parameter code} \usage{ filterWideDF(wideDF, PCode) } \arguments{ \item{wideDF}{data.frame} \item{PCode}{string 5 digit USGS parameter code (can be a vector)} } \value{ DF dataframe } \description{ Filter the wide dataframe by par...
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\name{SDG-package} \alias{SDG-package} \alias{SDG} \docType{package} \title{ Synthetic Data Generation for the Educational Data Mining. SDG } \description{ The goal of this package is to generate synthetic data. The package is very flexible while introducing parameters and very adaptive depending on the information the...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/probability_function.R \name{is_infected_in_free_stall} \alias{is_infected_in_free_stall} \title{Whether cows are infected in free pastures} \usage{ is_infected_in_free_stall(n_noinf, n_inf, month, param_sim) } \arguments{ \item{n_noinf}{The ...
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# generic state modifiers ---------------------------------------------------- #' set light state (lifx API endpoint PUT set state) #' #' @template param_power #' @template param_color_name #' @param brightness set the brightness (0-1) #' @template param_infrared #' @template param_duration #' @template param_fast #' ...
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# Append two more function calls to accomplish the following: # # 1. Use group_by() (from dplyr) to group the data by part and # sex, in that order. # # 2. Use mutate to add two new columns, whose values will be # automatically computed group-by-group: # # * total = sum(count) # * prop = count / total # ...
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####################################################################### # Individual based lottery model with spatially explicit # dispersal and environmental heterogeneity # # The model collapse to a neutral model when the niche breadth tends to infinity # # Store the results in a time series of occupancy, a presence...
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require(quanteda) toks_test <- tokens(data_corpus_inaugural, remove_punct = TRUE) dfmt_test <- dfm(toks_test) %>% dfm_remove(stopwords("en")) toks_dict_test <- tokens_lookup(toks_test, data_dictionary_newsmap_en, level = 3) dfmt_dict_test <- dfm(toks_test) test_that("textmodel_newsmap() works with differe...
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\name{ptMEinit,ptMEinitSrvrs,ptMEinitCons,ptMEsend,ptMErecv,ptMEclose, ptMEtest,ptMEtestWrkr} \alias{ptMEinit} \alias{ptMEinitSrvrs} \alias{ptMEinitCons} \alias{ptMEsend} \alias{ptMErecv} \alias{ptMEclose} \alias{ptMEtest} \alias{ptMEtestWrkr} \title{ Message-passing utilities. } \description{Simple MPI-like function...
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#' The Jackstraw Weighted Shrinkage Estimation Method for Sparse Loadings in Principal Component Analysis #' #' Estimates sparse/shrunken loadings of principal component analysis. #' Based on statistical sginificance of association between variables and principal components, #' the sample loadings of principal componen...
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library(tinytest) library(tiledb) exit_file("Skip for now") isOldWindows <- Sys.info()[["sysname"]] == "Windows" && grepl('Windows Server 2008', osVersion) if (isOldWindows) exit_file("skip this file on old Windows releases") isMacOS <- (Sys.info()['sysname'] == "Darwin") if (tiledb_version(TRUE) < "2.7.0") exit_file("...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/soil_erosion.R \name{soil_erosion} \alias{soil_erosion} \title{Soil Erosion Rates} \usage{ soil_erosion(area, time) } \arguments{ \item{This}{function will take inputs of land are in units of hecatres and a unit of time in year} } \value{ Thi...
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# Last Updated: # Author: Wesley Cai # Purpose: library(data.table) library(ggplot2) library(reshape2) # load gsea # source("/Users/wcai/Google_Drive/_Lab/Data/Bioinformatics/resources/gsea/gmt/load_gmt.R") # load for revamp source("/Users/wcai/Google_Drive/_Lab/Data/Bioinformatics/190720_revamp/analysis/190720_load...
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#Plot 1 # Let's load the given data set's NEI <- readRDS("summarySCC_PM25.rds") SCC <- readRDS("Source_Classification_Code.rds") # To plot the total emissions, we need to sum all the observations of Emissions by Year. I used Aggregate() function to calculate the Total #Emissions total_emissions <- aggregate(Emissions...
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################ # # Common methods to deal with a TAMM Spreadsheet Model # # Nicholas Komick # nicholas.komick@dfo-mpo.gc.ca # January 12, 2017 # Using: http://google-styleguide.googlecode.com/svn/trunk/google-r-style.html # ################ kDecimalRegEx <- "^[0-9]*[.]?[0-9]+([eE][-+]?[0-9]+)?$" required.packages <...
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#' <Add Title> #' #' <Add Description> #' #' @import htmlwidgets #' #' @export ##' ##' @title ##' @param data ##' @param rows ##' @param cols ##' @param vals ##' @param aggregatorName ##' @param width ##' @param height ##' @return ##' @author Enzo Martoglio rpivotTable <- function( data = NULL, rows = ...
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rho <- 0.5 # Number of predictors p <- 25 # Number of observations n <- 60 # Construct beta n_nonzero <- 5 beta <- rep(0, p) beta[11:(10 + n_nonzero)] <- stats::rt(n_nonzero, df = 3) * sqrt(0.5/(3 * n_nonzero/2)) # Construct x sigma <- 1 times <- 1:p H <- abs(outer(times, times, "-")) V <- sigma * rho^H x <- mvtnorm::r...
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library(ddalpha) ### Name: depth.space.halfspace ### Title: Calculate Depth Space using Halfspace Depth ### Aliases: depth.space.halfspace ### Keywords: robust multivariate nonparametric ### ** Examples # Generate a bivariate normal location-shift classification task # containing 20 training objects class1 <- mvrno...
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########### # Perform computation of post-stratification weights ########### #### Set up rm(list = ls()); setwd("~/Desktop/Bhaven/Harvard/Classes/CS208/DPsurveyweighting/"); #move working directory to the root of our DPsurveyweighting repo # install.packages("survey") require(plyr); require(dplyr); require(readr); req...
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source("http://bioconductor.org/biocLite.R") # bibtex -------------- biocLite("bibtex") library(bibtex) a <- read.bib("L:/Praca/Publikacje_Konferencje/TCDD.bib") head(a) # RISmed -------------- install.packages("RISmed") library(RISmed) search_topic <- 'copd' search_query <- EUtilsSummary(search_topic...
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library(sirad) library(Dasst) library(hydroGOF) library(optimr) library(dfoptim) library(FME) library(optimx) wd = "D:/ISmalia_DSSAT" Obs_data = read.csv(paste(wd,"/OBS_Calib-Data_.csv",sep="")) #-------------------------SC10 cultivar------------------------------ OBStotalDW <- round(Obs_data$Value[Obs_data$Vari=="...
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#' @rdname importas #' @param pkg A name of package #' @param nm An abbreviated name of the package #' #' @examples #' graphics %as% gr #' gr$plot #' #' @aliases as #' @export `%as%` <- function(pkg, nm) { assign( deparse(substitute(nm)), getNamespace(deparse(substitute(pkg))), parent.frame() ) }
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## Author: Indranil Ghosh, Jadavpur University, Physics Department ## Secant method f <- function(x) x*exp(x)-cos(x) Secant <- function(x0, x1, Max, epsilon) { k <- 1 while(k<=Max) { f0 <- f(x0) f1 <- f(x1) x2 <- x1-f1*(x1-x0)/(f1-f0) if(abs(x2 - x1)<epsilon) return (x2) x0 <- x1 ...
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#!/usr/bin/env Rscript args = commandArgs(trailingOnly=TRUE) # Tool function to remove spaces on strings trim <- function (x) gsub("^\\s+|\\s+$", "", x) # Define function to add clean "location" column # The format will be XXX,Stuttgart. It is used # to group and calculate average price per area beautyLocation <...
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% Generated by roxygen2 (4.1.0): do not edit by hand % Please edit documentation in R/drawNormalValues.R \name{drawNormalValues} \alias{drawNormalValues} \title{drawNormalValues Draws ui or ei values from N(groupMean, groupStandardDeviation).} \usage{ drawNormalValues(sizeOfDraw, groupMean, groupStandardDeviation) } \a...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/analysis.R \name{detect.change} \alias{detect.change} \title{Change point detection} \usage{ detect.change(data, type = c("mean", "var"), ..., plot = TRUE) } \arguments{ \item{data}{Time series data whose change point is to be detected. The d...
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####################################################################### ## R Code for Dissertation: Imputation and Setup for the Logit Model ## ####################################################################### ############# Things to do ############## # Fix the multicollinear imputation regressions DONE # Keep...
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\name{formatCode} \alias{formatCode} \title{Format R code for displaying in a document} \description{ This function is used to take code as text and format it for display in with the appropriate width - number of characters - etc. It is exported so that it can be called from XSL code that performs the forma...
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# comment on Steph's humour print("hahaha")
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library(httr) library(jsonlite) library(dplyr) library(plyr) library(readr) library(data.table) writeData <- function(yelpList, yelpCategories, writeColNames){ yelpDF <- rbindlist(yelpList, use.names=TRUE, fill=TRUE, idcol=NULL) yelpDF <- unique(yelpDF) # delete duplicates write.table(yelpDF, file = "yelpData....
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# Processing notes library(rvest) deb <- read_html("abortion-debate-hansard.html") mes <- html_nodes(deb, "div[class='hentry member_contribution']") speakers <- html_attr(html_node(mes, "cite a"), "title") voting <- list("abs"=c("Mr William Deedes", "Dr Horace King", "Sir John Hobson"), "no"=c("Mr Ke...
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auth_from_key = function(key) { cat("\nCtrl+c to exit\n") while (TRUE) { rem = get_remaining_time() p = totp_wrapper(key) p_str = sprintf("%06d", p) while (rem > 0) { cat('\r', paste0(p_str, " (", sprintf("%2d", rem), " seconds remaining ", progress_bar(rem), ") ")) utils::...
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### ### Prune tree tips based on an imported .csv file ### Prune.Tree <- function(SPECIES_TO_REMOVE,TREE,SAVE_FILE){ PRUNED_TREE<-drop.tip(TREE,TREE$tip.label[SPECIES_TO_REMOVE]) write.tree(PRUNED_TREE,file=SAVE_FILE) return(PRUNED_TREE) }
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/ac_get_campaigns.R \name{ac_get_campaigns} \alias{ac_get_campaigns} \title{Retrieve all campaings} \usage{ ac_get_campaigns() } \value{ tibble with campaings metadata } \description{ Campaigns are broadcast emails sent out to a list of contac...
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# Calculations with dataframes - 20200407 # This script is for playing around with data.frames. # Housekeeping ----------------------------------------------------------- library(tidyverse) library(LaurasHelpers) # Structures and classes of objects --------------------------------------- data(iris) str(iris) uniq...
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# График, составленный из элементов x <- seq(-pi,pi,.1) y <- sin(x) plot.new() plot.window(xlim = c(-pi,pi), ylim = c(-1,1)) points(x,y) axis(1) axis(2) box() title(xlab = "x") title(ylab = "y") # Тот же график, построенный с помощью функции высокого уровня plot(x,y) # Добавим заголовок и изменим метки осей координат...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/vanmaps.R \docType{package} \name{vanmaps} \alias{vanmaps} \alias{vanmaps-package} \title{vanmaps: A package for producing choropleth maps at the English County or Ambulance Service level.} \description{ Contains National Statistics data: Cro...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/case_study_results.R \name{exec_alert_counts} \alias{exec_alert_counts} \title{Exec Alert Counts} \usage{ exec_alert_counts(data, beginning_dates, middle_dates, end_dates) } \arguments{ \item{data}{Dataframe of territory RexT results} \item{...
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library(tidyverse) setwd("~/Documents/BSD-QBio5/tutorials/reproducibility/data") arth <- read.csv("cole_arthropod_data_1946.csv", stringsAsFactors = FALSE) weev_data <- read.csv("cole_arthropod_data_1946.csv", stringsAsFactors = FALSE)
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library(billboarder) ### Name: bb_lollipop ### Title: Helper for creating a lollipop chart ### Aliases: bb_lollipop ### ** Examples # From wikipedia sw <- data.frame( film = c("The Force Awakens", "The Phantom Menace", "Revenge of the Sith", "A New Hope", "Attack of the Clones", "The Empir...
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source("R/spartan/spartan_settings.R") library(dplyr) library(tibble) library(raster) library(rgeos) library(sf) library(tidyr) source("R/functions/source.functions.R") source.functions("R/functions") ntimesteps <- 14 proj_path <- "/data/gpfs/projects/punim1340/eg_fc_out/" ### eg_mask <- raster(x = "/data/gpf...
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#testing for observation uncertainty at the site level for bacterial groups. rm(list=ls()) source('paths.r') source('NEFI_functions/tic_toc.r') library(doParallel) library(DirichletReg) library(RCurl) script <- getURL("https://raw.githubusercontent.com/colinaverill/NEFI_microbe/master/paths.r", ssl.verifypeer = FALSE...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/assessLakeProfiles.r \name{assessLakeProfiles} \alias{assessLakeProfiles} \title{Run lake profile assessments} \usage{ assessLakeProfiles( data, do_crit = list(`3A` = 4, `3B` = 3), temp_crit = list(`3A` = 20, `3B` = 27), uses_assessed...
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#' Safe Rbind #' #' Recieve a list of data tables or data frames and combine them into one by columns. It fills the missing columns in a dataframe with \code{NA\'s} #' @usage safeRbind(dataframes,\cr #' cols = unique(do.call(c, llply(dataframes, colnames)))) #' @param dataframes a list of dataframes. #' @param c...
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#function for dummy inventory make_inv_db <- function(){ load("~/hopappmodule/data/inv_classes") load("~/hopappmodule/data/prod_list") load("~/hopappmodule/data/prod_num_list") inv_qty <- data.table(prod_name = prod_list, prod_num = prod_num_list) inv_qty[,eval(inv_classes[1]) := as.integer(3)] inv_qty[...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/shiny_rot.R \name{shiny_rot} \alias{shiny_rot} \title{Rotations and Data Plots} \usage{ shiny_rot() } \value{ Table with the first six entries of the uploaded data A scatterplot that is a ggplot2 object A second ggplot2 scatterplot } \descr...
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# Author: Annick Eudes JB Research Manager # Date: June 14, 2018 library(readxl) my_data <- read_excel("my_data.xlsx") View(my_data) # We start by defining the columns we whant to tranform to numeric : numerizeCol <- c("Q10:1", "Q10:2", "Q10:3", "Q10:4", "Q10:5", "Q10:6", "Q10:7", "Q10:8") my_data[nu...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/util.R \name{table_selectBy_Status} \alias{table_selectBy_Status} \title{按状态查询表} \usage{ table_selectBy_Status( config = cfg_edge, table_name = "t_icitem_view", FStatus = "FIsDo", FValue = 0 ) } \arguments{ \item{config}{配置文件} \item{...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/TestModularity.R \name{TestModularity} \alias{TestModularity} \title{Test modularity hypothesis} \usage{ TestModularity( cor.matrix, modularity.hypot, permutations = 1000, MHI = FALSE, ..., landmark.dim = NULL, withinLandmark = ...
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#### Librerias #### library(tidyverse) library(lubridate) set.seed(1) #### Datos #### gold = read_csv("data/GOLD_1791-2018.csv",skip = 3) interest_rate = read_csv("data/INTERESTRATE_1857-2018.csv",skip = 1) cpi = read_csv("data/USCPI_1774-2018.csv", skip=4) gdp = read_csv("data/USGDP_1790...
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#!/usr/local/bin/r ## initialize templates message("Creating templates...") library(evaluator) create_templates("/data") message("Templates created.")
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/conservationFuncs.R \name{consensus} \alias{consensus} \title{Determine consensus sequence} \usage{ consensus(alignment, threshold) } \arguments{ \item{alignment}{output of of \code{\link[seqinr]{read.alignment}} function or grouped alignment...
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#----------------------------------------------------------------------------# # Purpose: Load scripts locally # Author: Clara Marquardt # Date: 2017 #----------------------------------------------------------------------------# #---------------------------------------------------------------------...
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# process.r INPUT_DIR OUTPUT_DIR # Reads udpipe annotated tables from INPUT_DIR and writes processed text to OUTPUT_DIR keywords = c( "indicado", "indicada", "recomendado", "recomendada", "utilizado", "utilizada", "destinado", "destinada") # Converts IDs of the form "A-B" to A fix.token.id <- functi...
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Accessing CCII netCDF files.R
### Beginning to think about extracting data from a netCDF using R # Sally Owen # Public Insurance Project # November 2017 # Using the ncdf4 package: install.packages("ncdf4") install.packages("ncdf.tools") install.packages("ncdf.tools") install.packages("RNetCDF") install.packages("chron") install.packages("RCol...
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# Binarizer # #' @title Binarize multiple columns at once #' @description Binarize multiple columns of a dataframe based on a given threshold. #' #' \strong{binarizer} is designed to work with \link[magrittr]{\%>\%} pipelines. #' #' \strong{binarizer_} is a standard evalution version. #' @param data Dataframe, tbl,...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/slider-package.R \docType{package} \name{slider-package} \alias{slider-package} \alias{_PACKAGE} \title{slider: Sliding Window Functions} \description{ Provides type-stable rolling window functions over any R data type. Cumulative and exp...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/summary.intELtest.R \name{summary.intELtest} \alias{summary.intELtest} \title{Summary function for intELtest object} \usage{ \method{summary}{intELtest}(object, digits = max(3L, getOption("digits") - 3L), quiet = FALSE, ...) } \arguments{ \it...
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###DATA VIZ library(tidyverse) surveys_complete <- read.csv('data_output/surveys_complete.csv') ##ggplot2 ---- ggplot(data= surveys_complete, aes(x=weight, y=hindfoot_length)) + #telling we are going to be plotting off of this data, define aesthetics, plus sign adds more plotting instructions geom_point(alpha =0....
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# import dataset ebsco # - importar metadata # - separar / importar ocr # - separar / importar referencias library(tidyverse) library(foreach) library(xml2) library(rvest) library(doParallel) library(jsonlite) # import ebsco metadata y ocr ------------------- path <- './data/raw/ebsco_full/' global_metadata <- da...
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library(data.table) # Set up data using filtered data from plot1 data_filtered <- fread("household_consumption_filtered.csv",sep = ",",header = T) # Add DateTime column as combination of Date and Time columns data_filtered <- within(data_filtered, DateTime <- paste(Date, Time, sep = " ")) data_filtered$DateTime <- as.P...
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library(shiny) shinyUI( pageWithSidebar( headerPanel("IMDB Movie Ratings"), sidebarPanel( radioButtons( "mpaar", "MPAA Rating:", c('All','NC-17','PG','PG-13','R') ), br(), checkboxGroupInput( "gen", "Mo...
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The-Oxford-GBD-group/typhi_paratyphi_modelling_code
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rake_cell_pred.Rd
% Generated by roxygen2: do not edit by hand % Please edit documentation in R/rake_cell_pred.R \name{rake_cell_pred} \alias{rake_cell_pred} \title{Standard Raking Function} \usage{ rake_cell_pred(cell_pred, rake_to, reg, year_list, pop_measure, rake_method = "linear", rake_subnational = T, crosswalk = F, shapefile_...
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/man/map_edge_attributes.Rd
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no_license
meerapatelmd/chariotViz
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map_edge_attributes.Rd
% Generated by roxygen2: do not edit by hand % Please edit documentation in R/map.R \name{map_edge_attributes} \alias{map_edge_attributes} \title{FUNCTION_TITLE} \usage{ map_edge_attributes( nodes_and_edges, fontsize = 26, len = 5, label_from = relationship_name, style_from = defines_ancestry, style_map = d...
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sumendar/simpleblog
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2017-11-25T10:17:46
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06202015_datacience_circles.R
# create a multi library('ggplot2') gg <- ggplot() + scale_x_continuous(limits=c(0,1)) + scale_y_continuous(limits=c(0,1)) for(i in 1:10) gg <- gg + geom_point(aes(x=rnorm(1, 0.5, 0.04), y=rnorm(1, 0.5, 0.04)), size=runif(1, 40, 100), color='red', alpha=.15) plot(gg) gg <- gg + geom_point(aes(x=.5, y=.5), size=100,...
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/MNS/R/gen.Network.R
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ingted/R-Examples
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2020-04-14T12:29:22.336088
2016-07-21T14:01:14
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gen.Network.R
gen.Network <- function(method="cohort", p, Nobs, Nsub, sparsity, REsize, REprob, REnoise){ # wrapper function for generating random networks # # INPUT: # - method: method to be used to simulate networks. Either "cohort" for networks as described in Monti et al 2015 or "Danaher" for networks as described i...
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/R/estUtil.R
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no_license
syerramilli/R-sysid
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2023-06-08T17:55:07.929065
2023-06-07T03:29:14
2023-06-07T03:29:14
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2023-06-07T03:29:15
2015-01-17T12:38:48
R
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r
estUtil.R
# Implementation of the Levenberg Marquardt Algorithm levbmqdt <- function(...,obj,theta0,N,opt){ dots <- list(...) # Optimization Parameters tol <- opt$tol; maxIter <- opt$maxIter d <- opt$adv$LMinit; mu <- opt$adv$LMstep df <- N - dim(theta0)[1] # Initialize Algorithm i <- 0 l <- obj(theta=th...
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/data/genthat_extracted_code/PAFit/examples/get_statistics.Rd.R
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no_license
surayaaramli/typeRrh
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refs/heads/master
2023-05-05T04:05:31.617869
2019-04-25T22:10:06
2019-04-25T22:10:06
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r
get_statistics.Rd.R
library(PAFit) ### Name: get_statistics ### Title: Getting summarized statistics from input data ### Aliases: get_statistics PAFit_data ### ** Examples library("PAFit") net <- generate_BA(N = 100 , m = 1) net_stats <- get_statistics(net) summary(net_stats)
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/R/dcm_multiple2singlechoice.R
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[]
no_license
mbonoli/funcionesMBO
febcd54cd0284e645df26c91ff0318e5ecd8e043
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refs/heads/master
2021-01-20T18:16:21.755333
2016-07-23T21:31:48
2016-07-23T21:31:48
63,553,704
0
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r
dcm_multiple2singlechoice.R
dcm_multiple2singlechoice<- function (datalong, choicevar="choice", chidvar="chid", taskvar, indvar) { require(dplyr) names(datalong)[names(datalong)==choicevar] <- "choice" names(datalong)[names(datalong)==chidvar] <- "chid" choiceXchid <- summarise(group_by(datalong, chid), freq=sum(choice)) # print(head(...
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/week05/datetime.R
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no_license
Huride/radsp
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2022-12-05T16:02:11.174257
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2020-08-19T09:58:44
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datetime.R
# "2020-03-03" "2020-03-04 23:11:34" # "04/11/2020" "20-06-11" "2020/05/11" # 파일에 저장되어 있는 날짜들은? 문자열. # R이 이해할 수 있는 날짜 형식으로 변환. => 요일, 125일 후는? # 우리 회사 형식에 맞는 문자열로 바꿔서, 저장. d <- Sys.Date() d class(d) d + 137 weekdays(d) weekdays(d+137) # 2020,07,22 # R의 날짜 형식 Date를 , 문자열로 변환(우리 회사 형식에 맞게) format(d, format="%Y,...
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/community.r
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Arthur-Valance/Qualitative-Modeling-BarentsRISK
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refs/heads/master
2023-07-15T07:51:25.173983
2021-07-27T09:34:40
2021-07-27T09:34:40
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community.r
## Need util for URLencoding library(utils) ## Extract node labels node.labels <- function(edges) { levels(edges$From) } ## Convert edge descriptions to an adjacency matrix. The ## required.groups argument determines which edge groups will appear ## in the matrix. adjacency.matrix <- function(edges,labels=F,requ...
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/WorldTrade.R
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no_license
AvijeetBose/WorldTradeProject
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refs/heads/master
2022-11-27T06:14:59.774148
2020-08-07T07:35:23
2020-08-07T07:35:23
285,767,746
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r
WorldTrade.R
#install libraries library(dplyr) #load the dataset WorldTradeRecord <- read.csv("D:/R-Code/Project/Raw data.csv") #Create duplicate TradeBusinessWorldwide <- WorldTradeRecord #Update Column Name names(TradeBusinessWorldwide) <- c("CountryName", "Year", "Commoditycode", "Commodity", "Flow", ...
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/fixChangelogLinks.R
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no_license
nickmckay/lipdverseR
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56b01e8ce33dc9f71e39bdf1c5c978f3b33d1db7
refs/heads/master
2023-06-07T19:16:43.787187
2023-05-31T18:20:31
2023-05-31T18:20:31
182,172,405
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r
fixChangelogLinks.R
#fix summary links library(stringr) #"../changelogSummary.html" to "changelogSummary.html" for(i in allIndex){ ad <- readLines(i) if(any(str_detect(ad,pattern = "../changelogSummary.html" ))){ adf <- str_replace_all(ad,pattern = "../changelogSummary.html",replacement = "changelogSummary.html") print(i) ...
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/R/powerTransform.R
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no_license
cran/tlm
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refs/heads/master
2021-01-17T07:11:00.175043
2017-04-10T12:15:19
2017-04-10T12:15:19
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r
powerTransform.R
powerTransform <- function(x, power) { if (power == 0) xt <- log(x) else xt <- x^power xt }
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/test.R
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no_license
M-Atsuhiko/Result_Graphs
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refs/heads/master
2021-01-01T20:05:51.186799
2015-02-05T15:02:43
2015-02-05T15:02:43
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r
test.R
a <- 1:10 b <- 11:20 c <- 21:30 test <- data.frame(a,b,c) print(test[test$a == 2,])