Hugging Face's logo

Datasets:
prakhya15
/
human-microbe-dataset

Languages:
English
Tags:
microbiology
pathogens
infectious-disease
taxonomy
pubmed
chembl
Dataset card Data Studio Files
xet
 Community
Dataset Preview
Duplicate
The full dataset viewer is not available (click to read why). Only showing a preview of the rows.
The dataset generation failed because of a cast error
Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 17 new columns ({'ncbi_metadata_file', 'collection_date', 'serovar', 'geo_loc_name', 'biosample_acc', 'isolate_identifiers', 'isolation_source', 'asm_acc', 'drug_data_available_in_checkpoint', 'wgs_master_acc', 'bioproject_acc', 'strains', 'target_mode_of_action', 'host_disease', 'strain_count', 'effective_drugs', 'host'})

This happened while the csv dataset builder was generating data using

hf://datasets/prakhya15/human-microbe-dataset/bacteria_master.csv (at revision 4049f44305bf6b7529b7e137e2ac07868e429f87), ['hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/all_organisms_master.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/bacteria_master.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/bvbrc_bacteria_strains_targets.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/chembl/chembl_bacterial_MIC_IC50_final.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/chembl/chembl_drug_organism_potency_summary_FULL.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/chembl/chembl_drug_target_relations_complete.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/chembl/chembl_drugs_bacteria.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/chembl_targets.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/disease_evidence.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/evidence_matrix.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/human_evidence.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/lineage.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/microbe_master.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/microbial_master.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/ncbi_organism_candidates.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/organism_disease_summary.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/pubmed_evidence.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/verification_pool.csv']

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1848, in _prepare_split_single
                  writer.write_table(table)
                  ~~~~~~~~~~~~~~~~~~^^^^^^^
                File "/usr/local/lib/python3.14/site-packages/datasets/arrow_writer.py", line 784, in write_table
                  self._write_table(pa_table, writer_batch_size=writer_batch_size)
                  ~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.14/site-packages/datasets/arrow_writer.py", line 795, in _write_table
                  pa_table = table_cast(pa_table, self._schema)
                File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2378, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2306, in cast_table_to_schema
                  raise CastError(
                  ...<3 lines>...
                  )
              datasets.table.CastError: Couldn't cast
              taxid: int64
              rank: string
              organism_name: string
              names_from_pubmed: int64
              pubmed_paper_count: int64
              source_pubmed: bool
              source_chembl: bool
              source_hed: bool
              lineage_names: string
              lineage_ranks: string
              organism_type: string
              human_infection_count: int64
              human_disease_count: int64
              clinical_count: double
              pathogen_count: int64
              case_report_count: int64
              human_evidence_level: string
              human_evidence_score: double
              chembl_target_count: int64
              chembl_target_ids: string
              chembl_target_names: string
              chembl_target_types: string
              relevant_drugs: double
              effective_drugs: double
              drug_data_available_in_checkpoint: bool
              target_mode_of_action: string
              ncbi_metadata_file: string
              strain_count: double
              strains: string
              isolate_identifiers: string
              biosample_acc: string
              bioproject_acc: string
              asm_acc: string
              wgs_master_acc: string
              collection_date: string
              geo_loc_name: string
              host: string
              host_disease: string
              isolation_source: string
              serovar: string
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 5409
              to
              {'taxid': Value('int64'), 'rank': Value('string'), 'organism_name': Value('string'), 'names_from_pubmed': Value('int64'), 'pubmed_paper_count': Value('int64'), 'source_pubmed': Value('bool'), 'source_chembl': Value('bool'), 'source_hed': Value('bool'), 'lineage_names': Value('string'), 'lineage_ranks': Value('string'), 'organism_type': Value('string'), 'human_infection_count': Value('int64'), 'human_disease_count': Value('int64'), 'clinical_count': Value('float64'), 'pathogen_count': Value('int64'), 'case_report_count': Value('int64'), 'human_evidence_level': Value('string'), 'human_evidence_score': Value('float64'), 'chembl_target_count': Value('int64'), 'chembl_target_ids': Value('string'), 'chembl_target_names': Value('string'), 'chembl_target_types': Value('string'), 'relevant_drugs': Value('float64')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1369, in compute_config_parquet_and_info_response
                  parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
                                                                        ~~~~~~~~~~~~~~~~~~~~~~~~~^
                      builder, max_dataset_size_bytes=max_dataset_size_bytes
                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                  )
                  ^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 948, in stream_convert_to_parquet
                  builder._prepare_split(split_generator=splits_generators[split], file_format="parquet")
                  ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1694, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^
                      gen_kwargs=gen_kwargs, job_id=job_id, **_prepare_split_args
                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                  ):
                  ^
                File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1850, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
                  ...<4 lines>...
                  )
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 17 new columns ({'ncbi_metadata_file', 'collection_date', 'serovar', 'geo_loc_name', 'biosample_acc', 'isolate_identifiers', 'isolation_source', 'asm_acc', 'drug_data_available_in_checkpoint', 'wgs_master_acc', 'bioproject_acc', 'strains', 'target_mode_of_action', 'host_disease', 'strain_count', 'effective_drugs', 'host'})
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/prakhya15/human-microbe-dataset/bacteria_master.csv (at revision 4049f44305bf6b7529b7e137e2ac07868e429f87), ['hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/all_organisms_master.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/bacteria_master.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/bvbrc_bacteria_strains_targets.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/chembl/chembl_bacterial_MIC_IC50_final.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/chembl/chembl_drug_organism_potency_summary_FULL.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/chembl/chembl_drug_target_relations_complete.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/chembl/chembl_drugs_bacteria.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/chembl_targets.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/disease_evidence.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/evidence_matrix.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/human_evidence.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/lineage.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/microbe_master.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/microbial_master.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/ncbi_organism_candidates.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/organism_disease_summary.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/pubmed_evidence.csv', 'hf://datasets/prakhya15/human-microbe-dataset@4049f44305bf6b7529b7e137e2ac07868e429f87/verification_pool.csv']
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)

Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.

taxid
int64
rank
string
organism_name
string
names_from_pubmed
int64
pubmed_paper_count
int64
source_pubmed
bool
source_chembl
bool
source_hed
bool
lineage_names
string
lineage_ranks
string
organism_type
string
human_infection_count
int64
human_disease_count
int64
clinical_count
float64
pathogen_count
int64
case_report_count
int64
human_evidence_level
string
human_evidence_score
float64
chembl_target_count
int64
chembl_target_ids
string
chembl_target_names
string
chembl_target_types
string
relevant_drugs
null
287
species
Pseudomonas aeruginosa
2
1,945
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species
Bacteria
258
137
221
1,353
1,059
HIGH
90.834545
41
CHEMBL348 | CHEMBL5539 | CHEMBL5540 | CHEMBL5225 | CHEMBL5482 | CHEMBL5798 | CHEMBL6146 | CHEMBL1075209 | CHEMBL1075210 | CHEMBL1075211 | CHEMBL1075213 | CHEMBL1250341 | CHEMBL1255122 | CHEMBL1255123 | CHEMBL1287600 | CHEMBL1287601 | CHEMBL1287605 | CHEMBL1293244 | CHEMBL1293246 | CHEMBL1641350 | CHEMBL1744489 | CHEMBL...
Pseudomonas aeruginosa | Penicillin-binding protein 2 | Penicillin-binding protein 1B | Penicillin-binding protein 3 | Beta-lactamase OXA-10 | Beta-lactamase VIM-2 | Beta-lactamase VIM-4 | Heme oxygenase | Metallo-beta-lactamase type 2 | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | PhzR | Beta-lactamase...
ORGANISM | SINGLE PROTEIN | PROTEIN FAMILY | PROTEIN NUCLEIC-ACID COMPLEX | PROTEIN COMPLEX | SMALL MOLECULE | OLIGOSACCHARIDE | NUCLEIC-ACID
null
1,280
species
Staphylococcus aureus
1
1,642
true
true
false
root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
491
272
515
1,905
2,882
HIGH
99.844941
64
CHEMBL1982 | CHEMBL4114 | CHEMBL3994 | CHEMBL2565 | CHEMBL2549 | CHEMBL3825 | CHEMBL3512 | CHEMBL4726 | CHEMBL4088 | CHEMBL4089 | CHEMBL3436 | CHEMBL352 | CHEMBL4268 | CHEMBL4269 | CHEMBL4623 | CHEMBL4841 | CHEMBL3329 | CHEMBL4910 | CHEMBL5322 | CHEMBL5323 | CHEMBL5324 | CHEMBL5362 | CHEMBL5341 | CHEMBL5096 | CHEMBL511...
Isoleucine--tRNA ligase | Beta-lactamase | Enoyl-[acyl-carrier-protein] reductase [NADPH] FabI | Penicillin-binding protein 2b | Penicillin-binding protein 4 | Penicillin-binding protein 2 | Penicillin-binding protein 2a | Receptor-histidine kinase AgrC | DNA topoisomerase 4 subunit A | UDP-N-acetylenolpyruvoylglucosam...
SINGLE PROTEIN | ORGANISM | PROTEIN FAMILY | PROTEIN NUCLEIC-ACID COMPLEX | PROTEIN COMPLEX | UNKNOWN | OLIGOSACCHARIDE | MACROMOLECULE
null
562
species
Escherichia coli
2
1,609
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
894
924
370
1,839
1,143
HIGH
104.138971
69
CHEMBL1809 | CHEMBL2065 | CHEMBL1826 | CHEMBL2627 | CHEMBL354 | CHEMBL4951 | CHEMBL4298 | CHEMBL5321 | CHEMBL5420 | CHEMBL5041 | CHEMBL5305 | CHEMBL5308 | CHEMBL5309 | CHEMBL5437 | CHEMBL6131 | CHEMBL5729 | CHEMBL5821 | CHEMBL5677 | CHEMBL6137 | CHEMBL1075073 | CHEMBL5956 | CHEMBL1075081 | CHEMBL1075082 | CHEMBL1255135...
Dihydrofolate reductase | Beta-lactamase TEM | DNA gyrase subunit B | Dihydrofolate reductase type 1 | Escherichia coli | Beta-lactamase OXA-1 | DNA polymerase I | Beta lactamase TEM-152 | Mobilization protein A | Beta-lactamase TEM-125 | Beta-lactamase ACC-4 | Plasmid efflux fluoroquinolone | CMT-type beta lactamase |...
SINGLE PROTEIN | ORGANISM | PROTEIN COMPLEX
null
5,476
species
Candida albicans
3
914
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Saccharomycotina; Pichiomycetes; Serinales; Debaryomycetaceae; Candida; Candida albicans
no rank; cellular root; domain; clade; kingdom; subkingdom; phylum; clade; subphylum; class; order; family; genus; species
Fungi
111
113
72
659
602
HIGH
80.526626
25
CHEMBL1961 | CHEMBL1897 | CHEMBL2037 | CHEMBL2329 | CHEMBL4636 | CHEMBL3480 | CHEMBL1909 | CHEMBL366 | CHEMBL4844 | CHEMBL4256 | CHEMBL5359 | CHEMBL5515 | CHEMBL6021 | CHEMBL6050 | CHEMBL5644 | CHEMBL6022 | CHEMBL6139 | CHEMBL6178 | CHEMBL1163109 | CHEMBL2007621 | CHEMBL2364028 | CHEMBL2364035 | CHEMBL2364680 | CHEMBL2...
Chitin synthase 2 | Squalene epoxidase ERG1 | Beta-1,3-glucan synthase | Dihydrofolate reductase | Proline--tRNA ligase, cytoplasmic | Chitin synthase 1 | Glucan synthase | Candida albicans | Delta(7)-sterol 5(6)-desaturase | Isocitrate lyase | Protein kinase C-like 1 | Secreted aspartic protease 2 | Secreted aspartic ...
SINGLE PROTEIN | ORGANISM | SMALL MOLECULE | SUBCELLULAR | PROTEIN FAMILY | PROTEIN COMPLEX GROUP
null
1,773
species
Mycobacterium tuberculosis
1
546
true
true
false
root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species
Bacteria
144
180
142
763
1,656
HIGH
86.033718
87
CHEMBL1849 | CHEMBL1877 | CHEMBL2006 | CHEMBL2030 | CHEMBL2031 | CHEMBL2361 | CHEMBL3640 | CHEMBL2011 | CHEMBL3345 | CHEMBL360 | CHEMBL3703 | CHEMBL4624 | CHEMBL4450 | CHEMBL4165 | CHEMBL4540 | CHEMBL4542 | CHEMBL4543 | CHEMBL4544 | CHEMBL4213 | CHEMBL5357 | CHEMBL5090 | CHEMBL5091 | CHEMBL5182 | CHEMBL5783 | CHEMBL608...
Enoyl-[acyl-carrier-protein] reductase [NADH] | Probable arabinosyltransferase A | DNA-directed RNA polymerase subunit beta | D-alanine--D-alanine ligase | Alanine racemase | Thymidylate kinase | Mycobacterial beta-ketoacyl-[acyl-carrier-protein] synthase III | Fatty acid synthase | 3-dehydroquinate dehydratase | Mycob...
SINGLE PROTEIN | ORGANISM | PROTEIN NUCLEIC-ACID COMPLEX | PROTEIN COMPLEX
null
573
species
Klebsiella pneumoniae
1
476
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella pneumoniae complex; Klebsiella pneumoniae
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species
Bacteria
156
46
180
355
876
HIGH
78.323581
23
CHEMBL350 | CHEMBL5094 | CHEMBL6132 | CHEMBL6053 | CHEMBL1075174 | CHEMBL1255121 | CHEMBL1255144 | CHEMBL1287604 | CHEMBL1287629 | CHEMBL1641338 | CHEMBL1641358 | CHEMBL1667693 | CHEMBL1667694 | CHEMBL1667695 | CHEMBL1667696 | CHEMBL1667697 | CHEMBL1744492 | CHEMBL2189123 | CHEMBL4295603 | CHEMBL4523936 | CHEMBL4524002...
Klebsiella pneumoniae | Beta-lactamase SHV-1 | Carbapenem-hydrolyzing beta-lactamase KPC | Class A carbapenemase | Beta-lactamase SHV-5 | Beta-lactamase SHV-72 | Beta-lactamase SHV-55 | Beta-lactamase OXA-48 | AmpC | Class C beta-lactamase CMY-36 | Beta-lactamase | Extended spectrum beta-lactamase CTX-M-71 | Beta-lacta...
ORGANISM | SINGLE PROTEIN | PROTEIN COMPLEX
null
470
species
Acinetobacter baumannii
1
429
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex; Acinetobacter baumannii
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species
Bacteria
73
18
81
283
344
HIGH
68.951431
12
CHEMBL614425 | CHEMBL5153 | CHEMBL1075159 | CHEMBL1255143 | CHEMBL1667700 | CHEMBL1667701 | CHEMBL1681612 | CHEMBL2233620 | CHEMBL3885669 | CHEMBL4295546 | CHEMBL4295954 | CHEMBL4523937
Acinetobacter baumannii | Beta-lactamase OXA-58 | Beta-lactamase | Metallo-beta-lactamase | Beta-lactamase ADC-33 | ADC-11 | QacEdelta1 SMR family efflux pump | Extended-spectrum beta-lactamase SHV-48 | Beta-lactamase OXA-23 | Penicillin-binding protein 1B | Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-fa...
ORGANISM | SINGLE PROTEIN
null
1,313
species
Streptococcus pneumoniae
2
377
true
true
false
root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus pneumoniae
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
63
57
70
594
554
HIGH
75.603996
15
CHEMBL2757 | CHEMBL347 | CHEMBL1075022 | CHEMBL1075024 | CHEMBL2311225 | CHEMBL2362973 | CHEMBL2363033 | CHEMBL2363853 | CHEMBL3112380 | CHEMBL4105839 | CHEMBL4295522 | CHEMBL5498506 | CHEMBL5500297 | CHEMBL5500298 | CHEMBL5500299
rRNA adenine N-6-methyltransferase | Streptococcus pneumoniae | ParE | Enoyl-(Acyl-carrier-protein) reductase | DNA gyrase | Penicillin-binding protein | Topoisomerase IV | 70S ribosome | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | Sialidase A | Neuraminidase C | Polysaccharide conjugated to Corynebact...
SINGLE PROTEIN | ORGANISM | PROTEIN COMPLEX | PROTEIN FAMILY | PROTEIN NUCLEIC-ACID COMPLEX | OLIGOSACCHARIDE
null
28,901
species
Salmonella enterica
2
373
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
382
89
72
318
183
HIGH
79.913379
2
CHEMBL613762 | CHEMBL5169210
Salmonella enterica | Threonine--tRNA ligase
ORGANISM | SINGLE PROTEIN
null
746,128
species
Aspergillus fumigatus
2
364
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Fumigati; Aspergillus fumigatus
no rank; cellular root; domain; clade; kingdom; subkingdom; phylum; clade; subphylum; clade; class; subclass; order; family; genus; subgenus; species
Fungi
39
60
33
323
447
HIGH
69.149371
8
CHEMBL363 | CHEMBL4638 | CHEMBL5635 | CHEMBL1293196 | CHEMBL1641345 | CHEMBL1681624 | CHEMBL4296321 | CHEMBL4630893
Aspergillus fumigatus | Endochitinase B1 | Tryprostatin B synthase ftmPT1 | Endochitinase A1 | Aureobasidin-resistance protein | 14-alpha sterol demethylase | Fksp | Dihydroorotate dehydrogenase (quinone), mitochondrial
ORGANISM | SINGLE PROTEIN
null
5,811
species
Toxoplasma gondii
1
329
true
true
false
root; cellular organisms; Eukaryota; Sar; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Sarcocystidae; Toxoplasma; Toxoplasma gondii
no rank; cellular root; domain; clade; clade; phylum; class; subclass; order; suborder; family; genus; species
Protozoa
275
109
112
120
290
HIGH
75.690096
12
CHEMBL2425 | CHEMBL2982 | CHEMBL612888 | CHEMBL4668 | CHEMBL6051 | CHEMBL5831 | CHEMBL1250368 | CHEMBL1781862 | CHEMBL2097172 | CHEMBL2424507 | CHEMBL4295862 | CHEMBL4739860
Bifunctional dihydrofolate reductase-thymidylate synthase | Adenosine kinase | Toxoplasma gondii | Purine nucleoside phosphorylase | Mitogen-activated protein kinase 1 | Farnesyl diphosphate synthase | Enoyl-acyl carrier reductase | Calmodulin-domain protein kinase 1 | Dihydrofolate reductase; T. gondii vs rat | Actin ...
SINGLE PROTEIN | ORGANISM | SELECTIVITY GROUP
null
210
species
Helicobacter pylori
1
320
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
92
106
62
518
565
HIGH
78.033267
2
CHEMBL612600 | CHEMBL5325
Helicobacter pylori | Urease
ORGANISM | SINGLE PROTEIN
null
5,741
species
Giardia intestinalis
3
295
true
true
false
root; cellular organisms; Eukaryota; Metamonada; Fornicata; Diplomonadida; Hexamitidae; Giardiinae; Giardia; Giardia duodenalis
no rank; cellular root; domain; clade; phylum; order; family; subfamily; genus; species
Protozoa
21
6
1
14
13
MEDIUM
35.767503
5
CHEMBL612652 | CHEMBL1293234 | CHEMBL2364027 | CHEMBL4802003 | CHEMBL5058521
Giardia intestinalis | Fructose-bisphosphate aldolase | Pyruvate:ferredoxin oxidoreductase | Carbamate kinase | Tubulin beta chain
ORGANISM | SINGLE PROTEIN
null
1,639
species
Listeria monocytogenes
1
285
true
true
false
root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Listeriaceae; Listeria; Listeria monocytogenes
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
105
92
31
322
349
HIGH
73.929221
1
CHEMBL614974
Listeria monocytogenes
ORGANISM
null
5,207
species
Cryptococcus neoformans
2
284
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans
no rank; cellular root; domain; clade; kingdom; subkingdom; phylum; subphylum; class; order; family; genus; species group; species
Fungi
67
59
20
238
431
HIGH
68.700853
3
CHEMBL365 | CHEMBL1697676 | CHEMBL6195061
Cryptococcus neoformans | Carbonic anhydrase 2 | Phospholipase B
ORGANISM | SINGLE PROTEIN
null
1,314
species
Streptococcus pyogenes
2
271
true
true
false
root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus pyogenes
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
95
86
24
515
312
HIGH
75.069606
7
CHEMBL356 | CHEMBL2034806 | CHEMBL2346485 | CHEMBL2364103 | CHEMBL2364671 | CHEMBL3988594 | CHEMBL4523177
Streptococcus pyogenes | Streptopain | Streptokinase | 70S ribosome | Isoleucine--tRNA ligase | Dihydrofolate reductase | UDP-glucose 6-dehydrogenase
ORGANISM | SINGLE PROTEIN | PROTEIN NUCLEIC-ACID COMPLEX
null
6,252
species
Ascaris lumbricoides
1
265
true
false
false
root; cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Spirurina; Ascaridomorpha; Ascaridoidea; Ascarididae; Ascaris; Ascaris lumbricoides
no rank; cellular root; domain; clade; kingdom; clade; clade; clade; clade; phylum; class; order; suborder; infraorder; superfamily; family; genus; species
Helminth
43
2
7
4
124
MEDIUM
35.466982
0
null
null
null
null
5,833
species
Plasmodium falciparum
1
238
true
true
false
root; cellular organisms; Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Laverania; Plasmodium falciparum
no rank; cellular root; domain; clade; clade; phylum; class; order; family; genus; subgenus; species
Protozoa
129
106
174
186
353
HIGH
75.843036
56
CHEMBL1777 | CHEMBL1923 | CHEMBL2013 | CHEMBL4687 | CHEMBL4414 | CHEMBL4090 | CHEMBL364 | CHEMBL613897 | CHEMBL613898 | CHEMBL4968 | CHEMBL4510 | CHEMBL4512 | CHEMBL4513 | CHEMBL4150 | CHEMBL4156 | CHEMBL3486 | CHEMBL3488 | CHEMBL4697 | CHEMBL5173 | CHEMBL5541 | CHEMBL5193 | CHEMBL5648 | CHEMBL6169 | CHEMBL5800 | CHEMB...
Cytochrome b | Histidine-rich protein PFHRP-II | Dihydropteroate synthetase | Plasmepsin I | Plasmepsin II | Protein kinase Pfmrk | Plasmodium falciparum | Ferriprotoporphyrin IX | Hemozoin | Beta-ketoacyl-ACP-synthase III | Cysteine protease falcipain-3 | Fatty acid synthase | 3-oxoacyl-acyl-carrier protein reductase ...
SINGLE PROTEIN | ORGANISM | SMALL MOLECULE | MACROMOLECULE | PROTEIN COMPLEX
null
197
species
Campylobacter jejuni
1
233
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter jejuni
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
291
88
26
193
120
HIGH
73.899679
3
CHEMBL612492 | CHEMBL5013 | CHEMBL2007623
Campylobacter jejuni | CmeA | PglD
ORGANISM | SINGLE PROTEIN
null
5,693
species
Trypanosoma cruzi
1
228
true
true
false
root; cellular organisms; Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Trypanosoma; Schizotrypanum; Trypanosoma cruzi
no rank; cellular root; domain; clade; phylum; class; subclass; order; family; genus; subgenus; species
Protozoa
224
116
29
118
69
HIGH
70.897431
20
CHEMBL5131 | CHEMBL3563 | CHEMBL368 | CHEMBL4151 | CHEMBL4752 | CHEMBL5126 | CHEMBL5926 | CHEMBL5833 | CHEMBL5834 | CHEMBL1163130 | CHEMBL1681621 | CHEMBL3108659 | CHEMBL3988589 | CHEMBL4105902 | CHEMBL4295536 | CHEMBL4295611 | CHEMBL4495551 | CHEMBL4523319 | CHEMBL4662930 | CHEMBL6196084
Trypanothione reductase | Cruzipain | Trypanosoma cruzi | Hexokinase | Farnesyl diphosphate synthase | Trans-sialidase | Glyceraldehyde-3-phosphate dehydrogenase, glycosomal | Farnesyl synthetase, putative | Triosephosphate isomerase, glycosomal | Bifunctional dihydrofolate reductase-thymidylate synthase | Cyclic nucle...
SINGLE PROTEIN | ORGANISM | NUCLEIC-ACID
null
1,351
species
Enterococcus faecalis
2
215
true
true
false
root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; Enterococcus faecalis
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
56
25
53
145
218
HIGH
64.231568
4
CHEMBL362 | CHEMBL1293315 | CHEMBL3271927 | CHEMBL6066151
Enterococcus faecalis | Acetyl-CoA acetyltransferase/HMG-CoA reductase | Decarboxylase | Methionine--tRNA ligase
ORGANISM | SINGLE PROTEIN
null
5,759
species
Entamoeba histolytica
1
197
true
true
false
root; cellular organisms; Eukaryota; Amoebozoa; Evosea; Archamoebae; Mastigamoebida; Endamoebidae; Entamoeba; Entamoeba histolytica
no rank; cellular root; domain; clade; phylum; clade; order; family; genus; species
Protozoa
33
28
8
81
144
HIGH
55.612109
3
CHEMBL612853 | CHEMBL3774301 | CHEMBL3879846
Entamoeba histolytica | Cysteine proteinase 1 | Thioredoxin reductase
ORGANISM | SINGLE PROTEIN
null
666
species
Vibrio cholerae
3
191
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
66
69
16
352
79
HIGH
68.94505
2
CHEMBL614402 | CHEMBL2321642
Vibrio cholerae | Neuraminidase
ORGANISM | SINGLE PROTEIN
null
6,183
species
Schistosoma mansoni
1
186
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Spiralia; Lophotrochozoa; Platyhelminthes; Rhabditophora; Neodermata; Trematoda; Digenea; Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma; Schistosoma mansoni
no rank; cellular root; domain; clade; kingdom; clade; clade; clade; clade; clade; phylum; subphylum; superclass; class; subclass; order; superfamily; family; genus; species
Helminth
89
36
20
29
103
HIGH
56.571415
12
CHEMBL612893 | CHEMBL6110 | CHEMBL1293279 | CHEMBL2363079 | CHEMBL2363080 | CHEMBL2366043 | CHEMBL3797017 | CHEMBL4523517 | CHEMBL4523950 | CHEMBL4879549 | CHEMBL4888438 | CHEMBL5169215
Schistosoma mansoni | Thioredoxin glutathione reductase | Thioredoxin peroxidase | Voltage-activated calcium channel beta 1 subunit | Voltage-activated calcium channel beta 2 subunit | DNA | Histone deacetylase 8 | NAD-dependent protein deacetylase | Dihydroorotate dehydrogenase (quinone), mitochondrial | ATP-diphospho...
ORGANISM | SINGLE PROTEIN | NUCLEIC-ACID
null
40,324
species
Stenotrophomonas maltophilia
2
181
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Stenotrophomonas; Stenotrophomonas maltophilia group; Stenotrophomonas maltophilia
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species
Bacteria
22
3
13
60
139
HIGH
47.474986
3
CHEMBL612366 | CHEMBL3326 | CHEMBL1287609
Stenotrophomonas maltophilia | Beta-lactamase L1 | Catechol 2,3-dioxygenase
ORGANISM | SINGLE PROTEIN
null
36,087
species
Trichuris trichiura
1
174
true
false
false
root; cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Enoplea; Dorylaimia; Trichinellida; Trichuridae; Trichuris; Trichuris trichiura
no rank; cellular root; domain; clade; kingdom; clade; clade; clade; clade; phylum; class; subclass; order; family; genus; species
Helminth
31
8
2
3
14
MEDIUM
32.291364
0
null
null
null
null
4,932
species
Saccharomyces cerevisiae
1
173
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae
no rank; cellular root; domain; clade; kingdom; subkingdom; phylum; clade; subphylum; class; order; family; genus; species
Fungi
24
449
11
190
36
HIGH
66.045344
5
CHEMBL4357 | CHEMBL361 | CHEMBL5923 | CHEMBL3308902 | CHEMBL4630873
Alpha-glucosidase MAL62 | Saccharomyces cerevisiae | Aldehyde dehydrogenase 1, mitochondrial | Eukaryotic peptide chain release factor GTP-binding subunit | Exportin-1
SINGLE PROTEIN | ORGANISM
null
446
species
Legionella pneumophila
1
168
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella; Legionella pneumophila
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
53
41
13
190
154
HIGH
63.751852
2
CHEMBL612505 | CHEMBL1667669
Legionella pneumophila | Outer membrane protein MIP
ORGANISM | SINGLE PROTEIN
null
1,282
species
Staphylococcus epidermidis
1
167
true
true
false
root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus epidermidis
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
41
16
61
103
303
HIGH
60.643569
4
CHEMBL353 | CHEMBL2331040 | CHEMBL2364152 | CHEMBL4523931
Staphylococcus epidermidis | DNA gyrase | Thioredoxin reductase | Chloramphenicol acetyltransferase
ORGANISM | PROTEIN COMPLEX | SINGLE PROTEIN
null
6,248
species
Strongyloides stercoralis
1
159
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Tylenchina; Panagrolaimomorpha; Strongyloidoidea; Strongyloididae; Strongyloides; Strongyloides stercoralis
no rank; cellular root; domain; clade; kingdom; clade; clade; clade; clade; phylum; class; order; suborder; infraorder; superfamily; family; genus; species
Helminth
40
5
7
9
224
MEDIUM
41.317476
2
CHEMBL2363050 | CHEMBL6066846
Glutamate-gated chloride channel | Nuclear hormone receptor isoform A
SINGLE PROTEIN
null
727
species
Haemophilus influenzae
1
157
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; Haemophilus influenzae
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
22
29
51
158
241
HIGH
61.481515
2
CHEMBL355 | CHEMBL5169226
Haemophilus influenzae | Multidrug resistance protein HmrM
ORGANISM | SINGLE PROTEIN
null
6,210
species
Echinococcus granulosus
1
154
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Spiralia; Lophotrochozoa; Platyhelminthes; Rhabditophora; Neodermata; Cestoda; Eucestoda; Cyclophyllidea; Taeniidae; Echinococcus; Echinococcus granulosus group; Echinococcus granulosus
no rank; cellular root; domain; clade; kingdom; clade; clade; clade; clade; clade; phylum; subphylum; superclass; class; subclass; order; family; genus; species group; species
Helminth
89
28
2
4
516
HIGH
44.593583
2
CHEMBL4523369 | CHEMBL5442681
Thioredoxin glutathione reductase | Echinococcus granulosus
SINGLE PROTEIN | ORGANISM
null
672
species
Vibrio vulnificus
1
145
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio vulnificus
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
42
21
6
210
60
HIGH
59.079913
1
CHEMBL614404
Vibrio vulnificus
ORGANISM
null
485
species
Neisseria gonorrhoeae
1
135
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria gonorrhoeae
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
42
11
7
251
155
HIGH
59.355405
6
CHEMBL3565 | CHEMBL3970 | CHEMBL614430 | CHEMBL2311244 | CHEMBL2363077 | CHEMBL6066826
Dihydrofolate reductase | IgA-specific serine endopeptidase autotransporter | Neisseria gonorrhoeae | DNA gyrase | Topoisomerase IV | ATP-dependent Clp protease proteolytic subunit
SINGLE PROTEIN | ORGANISM | PROTEIN COMPLEX
null
5,478
species
Candida glabrata
4
135
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Nakaseomyces; Nakaseomyces glabratus
no rank; cellular root; domain; clade; kingdom; subkingdom; phylum; clade; subphylum; class; order; family; genus; species
Fungi
26
12
8
80
135
HIGH
52.157545
3
CHEMBL2042 | CHEMBL612647 | CHEMBL4296288
1,3-beta-glucan synthase | Nakaseomyces glabratus | 1,3-beta-glucan synthase component FKS1
SINGLE PROTEIN | ORGANISM
null
487
species
Neisseria meningitidis
1
131
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
27
25
19
225
198
HIGH
61.490552
11
CHEMBL614431 | CHEMBL1795154 | CHEMBL3309061 | CHEMBL3988622 | CHEMBL4295919 | CHEMBL5498503 | CHEMBL5498507 | CHEMBL5500286 | CHEMBL5500291 | CHEMBL5500293 | CHEMBL5500296
Neisseria meningitidis | Beta 1,3 N-acetylglucosaminyltransferase | Alpha 1,4 galactosyltransferase | Biliverdin-producing heme oxygenase | LgtC | Factor H binding protein | Polysaccharide conjugated to Tetanus toxoid | Neisseria adhesin A | Neisserial heparin binding antigen | Outer membrane vesicles | Oligosaccharide...
ORGANISM | SINGLE PROTEIN | OLIGOSACCHARIDE | SUBCELLULAR
null
615
species
Serratia marcescens
1
122
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Serratia; Serratia marcescens
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
16
12
23
78
138
HIGH
52.165522
8
CHEMBL614593 | CHEMBL5423 | CHEMBL5157 | CHEMBL5181 | CHEMBL5348 | CHEMBL5693 | CHEMBL1075256 | CHEMBL4105964
Serratia marcescens | Chitinase A | Carbapenem-hydrolyzing beta-lactamase SME-3 | Chitinase C1 | Chitinase B | Beta-lactamase | Proline iminopeptidase | Metallo-beta-lactamase type 2
ORGANISM | SINGLE PROTEIN
null
644
species
Aeromonas hydrophila
1
121
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas; Aeromonas hydrophila
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
33
26
16
62
89
HIGH
54.874863
3
CHEMBL612509 | CHEMBL1169593 | CHEMBL3885662
Aeromonas hydrophila | Metallo-beta-lactamase type 2 | Beta-lactamase
ORGANISM | SINGLE PROTEIN
null
28,450
species
Burkholderia pseudomallei
2
118
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group; Burkholderia pseudomallei
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species
Bacteria
40
44
15
67
232
HIGH
58.36803
2
CHEMBL3140323 | CHEMBL4630896
Burkholderia pseudomallei | Enoyl-[acyl-carrier-protein] reductase [NADH]
ORGANISM | SINGLE PROTEIN
null
813
species
Chlamydia trachomatis
1
118
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; PVC group; Chlamydiota; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia; Chlamydia trachomatis
no rank; cellular root; domain; kingdom; clade; phylum; class; order; family; no rank; genus; species
Bacteria
37
54
37
195
143
HIGH
65.207903
3
CHEMBL614606 | CHEMBL4888439 | CHEMBL6196189
Chlamydia trachomatis | Probable periplasmic serine endoprotease DegP-like | Deubiquitinase and deneddylase Dub2
ORGANISM | SINGLE PROTEIN
null
6,239
species
Caenorhabditis elegans
1
116
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans
no rank; cellular root; domain; clade; kingdom; clade; clade; clade; clade; phylum; class; order; suborder; infraorder; superfamily; family; subfamily; genus; species
Helminth
20
463
6
110
2
HIGH
59.135827
18
CHEMBL2448 | CHEMBL613135 | CHEMBL5197 | CHEMBL1250361 | CHEMBL1293302 | CHEMBL1293304 | CHEMBL1293319 | CHEMBL2146298 | CHEMBL2146313 | CHEMBL2268011 | CHEMBL2366473 | CHEMBL3085614 | CHEMBL3341583 | CHEMBL3351208 | CHEMBL3351209 | CHEMBL3351210 | CHEMBL3351211 | CHEMBL3879829
Probable deoxycytidylate deaminase | Caenorhabditis elegans | Serine/threonine-protein kinase SULU | Cell death protein 3 | Female germline-specific tumor suppressor gld-1 | RNA-binding protein pos-1 | Zinc finger protein mex-5 | Protein skinhead-1 | Heat shock protein hsp-16.2 | Chloride channel protein clh-3 | Probab...
SINGLE PROTEIN | ORGANISM
null
1,396
species
Bacillus cereus
1
115
true
true
false
root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Bacillaceae; Bacillus; Bacillus cereus group; Bacillus cereus
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species
Bacteria
24
30
15
149
82
HIGH
58.194659
9
CHEMBL613070 | CHEMBL5732 | CHEMBL1293202 | CHEMBL1744488 | CHEMBL4295695 | CHEMBL4739677 | CHEMBL5169213 | CHEMBL5169235 | CHEMBL5291588
Bacillus cereus | Beta-lactamase 1 | Phospholipase C | Metallo-beta-lactamase type 2 | 1-phosphatidylinositol phosphodiesterase | Collagenase ColQ1 | Collagenase ColA | Sphingomyelinase C
ORGANISM | SINGLE PROTEIN
null
1,764
species
Mycobacterium avium
1
115
true
true
false
root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC); Mycobacterium avium
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species
Bacteria
57
82
134
72
389
HIGH
66.727287
2
CHEMBL614982 | CHEMBL5457
Mycobacterium avium | Dihydrofolate reductase
ORGANISM | SINGLE PROTEIN
null
1,352
species
Enterococcus faecium
2
114
true
true
false
root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; Enterococcus faecium
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
59
18
69
90
137
HIGH
61.189237
7
CHEMBL357 | CHEMBL6037 | CHEMBL1667671 | CHEMBL1667672 | CHEMBL1681622 | CHEMBL3217389 | CHEMBL3243913
Enterococcus faecium | Vancomycin/teicoplanin A-type resistance protein VanA | D,D-dipeptidase | D,D-carboxypeptidase | D-alanyl-D-alanine dipeptidase | Aac(6')-Ii protein | Dihydrofolate reductase
ORGANISM | SINGLE PROTEIN
null
1,423
species
Bacillus subtilis
1
114
true
true
false
root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species
Bacteria
7
37
7
206
10
HIGH
52.450897
5
CHEMBL359 | CHEMBL4251 | CHEMBL1293248 | CHEMBL2417349 | CHEMBL5169304
Bacillus subtilis | rRNA adenine N-6-methyltransferase | 4'-phosphopantetheinyl transferase ffp | Cell division protein FtsZ | Lipoteichoic acid
ORGANISM | SINGLE PROTEIN | MACROMOLECULE
null
36,809
species
Mycobacterium abscessus
2
114
true
true
false
root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacteroides; Mycobacteroides abscessus
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
32
23
18
68
243
HIGH
56.07677
1
CHEMBL612951
Mycobacteroides abscessus
ORGANISM
null
777
species
Coxiella burnetii
1
98
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Legionellales; Coxiellaceae; Coxiella; Coxiella burnetii
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
126
54
15
47
187
HIGH
61.536372
1
CHEMBL3301408
Coxiella burnetii
ORGANISM
null
498,019
species
Candida auris
2
94
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Saccharomycotina; Pichiomycetes; Serinales; Metschnikowiaceae; Candidozyma; Candidozyma auris
no rank; cellular root; domain; clade; kingdom; subkingdom; phylum; clade; subphylum; class; order; family; genus; species
Fungi
8
1
16
39
52
MEDIUM
38.949456
1
CHEMBL4513186
[Candida] auris
ORGANISM
null
1,311
species
Streptococcus agalactiae
1
91
true
true
false
root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus agalactiae
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
27
23
20
72
142
HIGH
55.367166
1
CHEMBL614622
Streptococcus agalactiae
ORGANISM
null
292
species
Burkholderia cepacia
2
89
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex; Burkholderia cepacia
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species
Bacteria
21
9
12
64
103
HIGH
49.918151
1
CHEMBL612499
Burkholderia cepacia
ORGANISM
null
584
species
Proteus mirabilis
1
89
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae; Proteus; Proteus mirabilis
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
22
8
5
73
109
HIGH
48.937975
2
CHEMBL614444 | CHEMBL5744
Proteus mirabilis | Beta-lactamase
ORGANISM | SINGLE PROTEIN
null
5,807
species
Cryptosporidium parvum
1
88
true
true
false
root; cellular organisms; Eukaryota; Sar; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Cryptosporidiidae; Cryptosporidium; Cryptosporidium parvum
no rank; cellular root; domain; clade; clade; phylum; class; subclass; order; suborder; family; genus; species
Protozoa
57
15
24
42
16
HIGH
52.636504
8
CHEMBL3626 | CHEMBL612855 | CHEMBL4740 | CHEMBL6145 | CHEMBL2364026 | CHEMBL2366489 | CHEMBL4295639 | CHEMBL4295867
Histone deacetylase | Cryptosporidium parvum | Inosine-5'-monophosphate dehydrogenase | Pyruvate dehydrogenase [NADP(+)] | Bifunctional dihydrofolate reductase-thymidylate synthase | Cgd5_820 protein | Calcium-dependent protein kinase 2
SINGLE PROTEIN | ORGANISM
null
6,204
species
Taenia solium
2
87
true
false
false
root; cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Spiralia; Lophotrochozoa; Platyhelminthes; Rhabditophora; Neodermata; Cestoda; Eucestoda; Cyclophyllidea; Taeniidae; Taenia; Taenia solium
no rank; cellular root; domain; clade; kingdom; clade; clade; clade; clade; clade; phylum; subphylum; superclass; class; subclass; order; family; genus; species
Helminth
38
15
1
2
178
MEDIUM
35.038754
0
null
null
null
null
95,486
species
Burkholderia cenocepacia
1
87
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex; Burkholderia cenocepacia
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species
Bacteria
4
1
3
35
9
MEDIUM
31.509962
2
CHEMBL1641339 | CHEMBL3301412
PenB class A beta-lactamase | Burkholderia cenocepacia
SINGLE PROTEIN | ORGANISM
null
948
species
Anaplasma phagocytophilum
2
86
true
false
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Anaplasma; phagocytophilum group; Anaplasma phagocytophilum
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species
Bacteria
62
56
29
68
57
HIGH
60.735063
0
null
null
null
null
6,192
species
Fasciola hepatica
1
85
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Spiralia; Lophotrochozoa; Platyhelminthes; Rhabditophora; Neodermata; Trematoda; Digenea; Plagiorchiida; Echinostomata; Echinostomatoidea; Fasciolidae; Fasciola; Fasciola hepatica
no rank; cellular root; domain; clade; kingdom; clade; clade; clade; clade; clade; phylum; subphylum; superclass; class; subclass; order; suborder; superfamily; family; genus; species
Helminth
71
18
17
6
85
HIGH
45.904623
3
CHEMBL612860 | CHEMBL5169140 | CHEMBL5169145
Fasciola hepatica | Putative cathepsin L3 | Cathepsin L1
ORGANISM | SINGLE PROTEIN
null
630
species
Yersinia enterocolitica
1
84
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia; Yersinia enterocolitica
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
107
35
8
67
74
HIGH
59.288558
3
CHEMBL614398 | CHEMBL4404 | CHEMBL3341585
Yersinia enterocolitica | Tyrosine-protein phosphatase YopH | Salicylate synthetase, Irp9
ORGANISM | SINGLE PROTEIN
null
1,307
species
Streptococcus suis
1
82
true
true
false
root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus suis
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
110
19
31
62
73
HIGH
59.776528
1
CHEMBL3301404
Streptococcus suis
ORGANISM
null
51,028
species
Enterobius vermicularis
1
79
true
false
false
root; cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Spirurina; Oxyuridomorpha; Oxyuroidea; Oxyuridae; Enterobius; Enterobius vermicularis
no rank; cellular root; domain; clade; kingdom; clade; clade; clade; clade; phylum; class; order; suborder; infraorder; superfamily; family; genus; species
Helminth
14
2
1
2
69
MEDIUM
25.255889
0
null
null
null
null
5,059
species
Aspergillus flavus
1
79
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Circumdati; Aspergillus flavus
no rank; cellular root; domain; clade; kingdom; subkingdom; phylum; clade; subphylum; clade; class; subclass; order; family; genus; subgenus; species
Fungi
14
15
10
48
143
MEDIUM
48.374672
1
CHEMBL614955
Aspergillus flavus
ORGANISM
null
670
species
Vibrio parahaemolyticus
1
76
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio harveyi group; Vibrio parahaemolyticus
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species
Bacteria
33
27
8
109
12
HIGH
54.563856
1
CHEMBL614403
Vibrio parahaemolyticus
ORGANISM
null
5,037
species
Histoplasma capsulatum
1
76
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ajellomycetaceae; Histoplasma; Histoplasma capsulatum
no rank; cellular root; domain; clade; kingdom; subkingdom; phylum; clade; subphylum; clade; class; subclass; order; family; genus; species
Fungi
14
8
11
28
266
MEDIUM
44.817416
1
CHEMBL614625
Histoplasma capsulatum
ORGANISM
null
6,339
species
Heligmosomoides polygyrus
2
70
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae; Heligmosomoides; Heligmosomoides polygyrus
no rank; cellular root; domain; clade; kingdom; clade; clade; clade; clade; phylum; class; order; suborder; infraorder; superfamily; family; genus; species
Helminth
1
0
1
1
1
LOW
8.317766
1
CHEMBL612662
Heligmosomoides polygyrus
ORGANISM
null
520
species
Bordetella pertussis
1
70
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella pertussis
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
31
21
28
92
68
HIGH
56.767767
4
CHEMBL614434 | CHEMBL5500287 | CHEMBL5500288 | CHEMBL5500292
Bordetella pertussis | Filamentous hemagglutinin | Pertactin autotransporter | Pertussis toxin
ORGANISM | SINGLE PROTEIN | PROTEIN COMPLEX
null
5,551
species
Trichophyton rubrum
2
70
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Arthrodermataceae; Trichophyton; Trichophyton rubrum
no rank; cellular root; domain; clade; kingdom; subkingdom; phylum; clade; subphylum; clade; class; subclass; order; family; genus; species
Fungi
12
3
5
24
67
MEDIUM
38.316086
1
CHEMBL612649
Trichophyton rubrum
ORGANISM
null
5,671
species
Leishmania infantum
1
68
true
true
false
root; cellular organisms; Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania donovani species complex; Leishmania infantum
no rank; cellular root; domain; clade; phylum; class; subclass; order; family; subfamily; genus; subgenus; species group; species
Protozoa
59
49
52
20
84
HIGH
55.719295
5
CHEMBL612848 | CHEMBL1944501 | CHEMBL2311240 | CHEMBL4295531 | CHEMBL4662927
Leishmania infantum | Trypanothione reductase | Putative silent information regulator 2 | Putative lanosterol 14-alpha-demethylase | Histidine--tRNA ligase
ORGANISM | SINGLE PROTEIN
null
263
species
Francisella tularensis
1
68
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella; Francisella tularensis
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
60
55
7
75
87
HIGH
58.809437
1
CHEMBL5291655
Francisella tularensis
ORGANISM
null
1,502
species
Clostridium perfringens
1
66
true
true
false
root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; Clostridium perfringens
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
21
30
24
47
167
MEDIUM
53.583852
2
CHEMBL614967 | CHEMBL5189
Clostridium perfringens | Sialidase
ORGANISM | SINGLE PROTEIN
null
5,855
species
Plasmodium vivax
1
66
true
true
false
root; cellular organisms; Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium; Plasmodium vivax
no rank; cellular root; domain; clade; clade; phylum; class; order; family; genus; subgenus; species
Protozoa
54
15
58
20
182
HIGH
52.934272
4
CHEMBL613013 | CHEMBL6198 | CHEMBL3559638 | CHEMBL5291504
Plasmodium vivax | Aspartic protease PM4 | Plasmepsin V | Bifunctional dihydrofolate reductase-thymidylate synthase
ORGANISM | SINGLE PROTEIN
null
6,185
species
Schistosoma haematobium
1
66
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Spiralia; Lophotrochozoa; Platyhelminthes; Rhabditophora; Neodermata; Trematoda; Digenea; Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma; Schistosoma haematobium
no rank; cellular root; domain; clade; kingdom; clade; clade; clade; clade; clade; phylum; subphylum; superclass; class; subclass; order; superfamily; family; genus; species
Helminth
30
8
4
6
87
MEDIUM
37.753386
1
CHEMBL4296598
Schistosoma haematobium
ORGANISM
null
632
species
Yersinia pestis
2
65
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia; Yersinia pseudotuberculosis complex; Yersinia pestis
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species
Bacteria
37
42
5
86
15
HIGH
54.519593
9
CHEMBL3646 | CHEMBL614597 | CHEMBL1075037 | CHEMBL1287621 | CHEMBL1795082 | CHEMBL1795200 | CHEMBL2311235 | CHEMBL3308969 | CHEMBL3879849
Secreted effector protein | Yersinia pestis | Plasminogen activator | Fructose-bisphosphate aldolase class II | DNA topoisomerase | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase | Threonine--tRNA ligase | AMP-binding enzyme family protein | Yersiniabactin biosynthetic protein
SINGLE PROTEIN | ORGANISM
null
6,265
species
Toxocara canis
1
65
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Spirurina; Ascaridomorpha; Ascaridoidea; Toxocaridae; Toxocara; Toxocara canis
no rank; cellular root; domain; clade; kingdom; clade; clade; clade; clade; phylum; class; order; suborder; infraorder; superfamily; family; genus; species
Helminth
61
14
6
1
64
HIGH
36.164632
1
CHEMBL5442682
Toxocara canis
ORGANISM
null
6,334
species
Trichinella spiralis
1
65
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Enoplea; Dorylaimia; Trichinellida; Trichinellidae; Trichinella; Trichinella spiralis
no rank; cellular root; domain; clade; kingdom; clade; clade; clade; clade; phylum; class; subclass; order; family; genus; species
Helminth
25
13
5
3
14
MEDIUM
34.172599
1
CHEMBL613455
Trichinella spiralis
ORGANISM
null
5,482
species
Candida tropicalis
1
65
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Saccharomycotina; Pichiomycetes; Serinales; Debaryomycetaceae; Candida; Candida tropicalis
no rank; cellular root; domain; clade; kingdom; subkingdom; phylum; clade; subphylum; class; order; family; genus; species
Fungi
11
8
6
44
93
MEDIUM
43.999728
2
CHEMBL612870 | CHEMBL4296311
Candida tropicalis | 1,3-beta-D-glucan synthase subunit 1
ORGANISM | SINGLE PROTEIN
null
109,871
species
Batrachochytrium dendrobatidis
1
63
true
false
false
root; cellular organisms; Eukaryota; Opisthokonta; Fungi; Fungi incertae sedis; chytridiomyceta; Chytridiomycota; Chytridiomycotina; Chytridiomycetes; Rhizophydiales; Rhizophydiales incertae sedis; Batrachochytrium; Batrachochytrium dendrobatidis
no rank; cellular root; domain; clade; kingdom; no rank; clade; phylum; subphylum; class; order; no rank; genus; species
Fungi
0
0
7
2
2
LOW
10.750557
0
null
null
null
null
1,392
species
Bacillus anthracis
1
62
true
true
false
root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Bacillaceae; Bacillus; Bacillus cereus group; Bacillus anthracis
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species
Bacteria
29
23
5
64
50
HIGH
51.526232
16
CHEMBL4372 | CHEMBL5270 | CHEMBL5271 | CHEMBL5352 | CHEMBL5396 | CHEMBL5751 | CHEMBL613904 | CHEMBL1075045 | CHEMBL1075046 | CHEMBL1075320 | CHEMBL2079847 | CHEMBL2176851 | CHEMBL3102690 | CHEMBL3301396 | CHEMBL3329078 | CHEMBL4295616
Lethal factor | Dihydrofolate reductase | NH(3)-dependent NAD(+) synthetase | Protective antigen | Calmodulin-sensitive adenylate cyclase | Beta-lactamase | Bacillus anthracis | Dihydropteroate synthase | Dihydrodipicolinate synthase | Probable nicotinate-nucleotide adenylyltransferase | Beta-lactamase II | Replicative...
SINGLE PROTEIN | ORGANISM | PROTEIN COMPLEX
null
1,496
species
Clostridioides difficile
1
61
true
true
false
root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides; Clostridioides difficile
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
31
23
29
54
136
HIGH
55.156147
5
CHEMBL614965 | CHEMBL2363852 | CHEMBL3580504 | CHEMBL3580505 | CHEMBL4804248
Clostridioides difficile | DNA-directed RNA polymerase | Toxin A | Toxin B | Elongation factor Tu
ORGANISM | PROTEIN COMPLEX | SINGLE PROTEIN
null
5,691
species
Trypanosoma brucei
1
61
true
true
false
root; cellular organisms; Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei
no rank; cellular root; domain; clade; phylum; class; subclass; order; family; genus; subgenus; species
Protozoa
31
80
7
82
9
HIGH
55.601962
16
CHEMBL2601 | CHEMBL612849 | CHEMBL4386 | CHEMBL5686 | CHEMBL5672 | CHEMBL5832 | CHEMBL1075156 | CHEMBL1075193 | CHEMBL1169595 | CHEMBL1741201 | CHEMBL1770043 | CHEMBL2010636 | CHEMBL2146316 | CHEMBL2366047 | CHEMBL3337328 | CHEMBL3758065
Adenosine transporter 1 | Trypanosoma brucei | Vacuolar-type proton translocating pyrophosphatase 1 | ATP-dependent 6-phosphofructokinase | Glucose-6-phosphate 1-dehydrogenase | Cathepsin B-like cysteine protease | Metacaspase-3 | Metacaspase-2 | UDP-galactose 4-epimerase | Hexokinase | 6-phosphogluconate dehydrogenase...
SINGLE PROTEIN | ORGANISM | NUCLEIC-ACID
null
5,868
species
Babesia microti
1
59
true
true
false
root; cellular organisms; Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Piroplasmida; Babesiidae; Babesia; Babesia microti
no rank; cellular root; domain; clade; clade; phylum; class; order; family; genus; species
Protozoa
38
28
6
55
47
HIGH
52.645914
1
CHEMBL6195127
Babesia microti
ORGANISM
null
37,727
species
Talaromyces marneffei
2
59
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; Talaromyces; Talaromyces sect. Talaromyces; Talaromyces marneffei
no rank; cellular root; domain; clade; kingdom; subkingdom; phylum; clade; subphylum; clade; class; subclass; order; family; genus; section; species
Fungi
3
2
0
9
127
MEDIUM
25.20597
1
CHEMBL612994
Talaromyces marneffei
ORGANISM
null
550
species
Enterobacter cloacae
1
58
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex; Enterobacter cloacae
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species
Bacteria
20
4
31
56
120
HIGH
48.948922
8
CHEMBL2725 | CHEMBL3499 | CHEMBL3652 | CHEMBL349 | CHEMBL4314 | CHEMBL5219 | CHEMBL3562179 | CHEMBL3562181
Beta-lactamase | Beta-lactamase class C | Beta-lactamase TEM | Enterobacter cloacae | Imipenem-hydrolyzing beta-lactamase | IMI-1 | Class A carbapenemase
SINGLE PROTEIN | ORGANISM
null
6,182
species
Schistosoma japonicum
1
58
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Spiralia; Lophotrochozoa; Platyhelminthes; Rhabditophora; Neodermata; Trematoda; Digenea; Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma; Schistosoma japonicum
no rank; cellular root; domain; clade; kingdom; clade; clade; clade; clade; clade; phylum; subphylum; superclass; class; subclass; order; superfamily; family; genus; species
Helminth
66
15
4
4
43
HIGH
40.186792
2
CHEMBL612644 | CHEMBL4105850
Schistosoma japonicum | Glutathione-S-transferase
ORGANISM | SINGLE PROTEIN
null
5,061
species
Aspergillus niger
1
58
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Circumdati; Aspergillus niger
no rank; cellular root; domain; clade; kingdom; subkingdom; phylum; clade; subphylum; clade; class; subclass; order; family; genus; subgenus; species
Fungi
4
6
0
59
70
HIGH
37.009885
8
CHEMBL4728 | CHEMBL3435 | CHEMBL3745 | CHEMBL3936 | CHEMBL358 | CHEMBL4753 | CHEMBL5417 | CHEMBL5085
Exo-1,4-beta-xylosidase xlnD | Alpha-glucosidase | Glucoamylase | Alpha-galactosidase C | Aspergillus niger | Beta-galactosidase | Beta-mannosidase A | Alpha-galactosidase
SINGLE PROTEIN | ORGANISM
null
4,754
species
Pneumocystis carinii
1
57
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Pneumocystomycetes; Pneumocystales; Pneumocystaceae; Pneumocystis; Pneumocystis carinii
no rank; cellular root; domain; clade; kingdom; subkingdom; phylum; subphylum; class; order; family; genus; species
Fungi
12
6
16
14
123
MEDIUM
40.124487
6
CHEMBL1926 | CHEMBL613064 | CHEMBL1075204 | CHEMBL2097173 | CHEMBL3085612 | CHEMBL5169219
Dihydrofolate reductase | Pneumocystis carinii | Lanosterol synthase | Dihydrofolate reductase; P. carinii vs rat | Thymidylate synthase | Mitogen-activated protein kinase 2
SINGLE PROTEIN | ORGANISM | SELECTIVITY GROUP
null
31,281
species
Enterocytozoon bieneusi
1
57
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Fungi; Fungi incertae sedis; Microsporidia; Apansporoblastina; Enterocytozoonidae; Enterocytozoon; Enterocytozoon bieneusi
no rank; cellular root; domain; clade; kingdom; no rank; phylum; suborder; family; genus; species
Fungi
56
13
2
32
12
HIGH
46.334089
1
CHEMBL615044
Enterocytozoon bieneusi
ORGANISM
null
83,558
species
Chlamydophila pneumoniae
2
56
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; PVC group; Chlamydiota; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia; Chlamydia pneumoniae
no rank; cellular root; domain; kingdom; clade; phylum; class; order; family; no rank; genus; species
Bacteria
3
7
3
18
8
MEDIUM
31.47551
2
CHEMBL612694 | CHEMBL4105762
Chlamydia pneumoniae | Peptidyl-prolyl cis-trans isomerase Mip
ORGANISM | SINGLE PROTEIN
null
6,313
species
Angiostrongylus cantonensis
1
56
true
false
false
root; cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Strongyloidea; Metastrongylidae; Angiostrongylus; Angiostrongylus cantonensis
no rank; cellular root; domain; clade; kingdom; clade; clade; clade; clade; phylum; class; order; suborder; infraorder; superfamily; family; genus; species
Helminth
60
9
3
10
52
HIGH
42.083608
0
null
null
null
null
37,769
species
Cryptococcus gattii
1
56
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii
no rank; cellular root; domain; clade; kingdom; subkingdom; phylum; subphylum; class; order; family; genus; species group; species
Fungi
19
15
15
25
81
MEDIUM
46.543075
1
CHEMBL6195486
Cryptococcus gattii
ORGANISM
null
283,734
species
Staphylococcus pseudintermedius
1
54
true
false
false
root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus intermedius group; Staphylococcus pseudintermedius
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species
Bacteria
32
4
16
18
22
MEDIUM
42.33846
0
null
null
null
null
27,835
species
Nippostrongylus brasiliensis
1
53
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae; Nippostrongylus; Nippostrongylus brasiliensis
no rank; cellular root; domain; clade; kingdom; clade; clade; clade; clade; phylum; class; order; suborder; infraorder; superfamily; family; genus; species
Helminth
5
3
1
3
0
LOW
19.643687
1
CHEMBL613822
Nippostrongylus brasiliensis
ORGANISM
null
817
species
Bacteroides fragilis
1
52
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides fragilis
no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species
Bacteria
28
18
40
20
74
MEDIUM
49.269745
2
CHEMBL614411 | CHEMBL4840
Bacteroides fragilis | Metallo-beta-lactamase type 2
ORGANISM | SINGLE PROTEIN
null
28,141
species
Cronobacter sakazakii
2
51
true
true
false
root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Cronobacter; Cronobacter sakazakii
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
1
1
4
3
5
LOW
16.794137
1
CHEMBL4523084
Cronobacter sakazakii
ORGANISM
null
42,068
species
Pneumocystis jirovecii
1
51
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Pneumocystomycetes; Pneumocystales; Pneumocystaceae; Pneumocystis; Pneumocystis jirovecii
no rank; cellular root; domain; clade; kingdom; subkingdom; phylum; subphylum; class; order; family; genus; species
Fungi
1
5
6
11
315
MEDIUM
30.219963
2
CHEMBL2057 | CHEMBL2366046
Dihydrofolate reductase | DNA
SINGLE PROTEIN | NUCLEIC-ACID
null
5,507
species
Fusarium oxysporum
1
51
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; sordariomyceta; Sordariomycetes; Hypocreomycetidae; Hypocreales; Nectriaceae; Fusarium; Fusarium oxysporum species complex; Fusarium oxysporum
no rank; cellular root; domain; clade; kingdom; subkingdom; phylum; clade; subphylum; clade; clade; class; subclass; order; family; genus; species group; species
Fungi
13
6
3
52
16
HIGH
41.851221
1
CHEMBL612648
Fusarium oxysporum
ORGANISM
null
5,850
species
Plasmodium knowlesi
1
49
true
true
false
root; cellular organisms; Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium; Plasmodium knowlesi
no rank; cellular root; domain; clade; clade; phylum; class; order; family; genus; subgenus; species
Protozoa
76
11
14
10
19
HIGH
45.231251
1
CHEMBL613011
Plasmodium knowlesi
ORGANISM
null
1,747
species
Propionibacterium acnes
2
49
true
true
false
root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Propionibacteriales; Propionibacteriaceae; Cutibacterium; Cutibacterium acnes
no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species
Bacteria
9
17
14
11
155
MEDIUM
40.771945
2
CHEMBL612639 | CHEMBL2364151
Cutibacterium acnes | Thioredoxin reductase
ORGANISM | SINGLE PROTEIN
null
5,661
species
Leishmania donovani
1
49
true
true
false
root; cellular organisms; Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania donovani species complex; Leishmania donovani
no rank; cellular root; domain; clade; phylum; class; subclass; order; family; subfamily; genus; subgenus; species group; species
Protozoa
20
43
10
47
59
MEDIUM
51.776799
6
CHEMBL3186 | CHEMBL367 | CHEMBL4751 | CHEMBL3693 | CHEMBL6192 | CHEMBL2176840
Beta tubulin | Leishmania donovani | Cysteine protease | Farnesyl pyrophosphate synthase | Ornithine decarboxylase | Trypanothione reductase
SINGLE PROTEIN | ORGANISM
null
110,766
species
Entamoeba coli
1
49
true
false
false
root; cellular organisms; Eukaryota; Amoebozoa; Evosea; Archamoebae; Mastigamoebida; Endamoebidae; Entamoeba; Entamoeba coli
no rank; cellular root; domain; clade; phylum; clade; order; family; genus; species
Protozoa
4
3
1
1
4
LOW
17.058103
0
null
null
null
null
5,755
species
Acanthamoeba castellanii
2
48
true
true
false
root; cellular organisms; Eukaryota; Amoebozoa; Discosea; Longamoebia; Centramoebida; Acanthamoebidae; Acanthamoeba; Acanthamoeba castellanii
no rank; cellular root; domain; clade; phylum; order; clade; family; genus; species
Protozoa
24
8
1
44
5
MEDIUM
41.678543
3
CHEMBL614744 | CHEMBL4295699 | CHEMBL4295712
Acanthamoeba castellanii | Myosin-2 heavy chain, non muscle | Myosin IC heavy chain
ORGANISM | SINGLE PROTEIN
null
563,466
species
Scedosporium apiospermum
2
48
true
true
false
root; cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; sordariomyceta; Sordariomycetes; Hypocreomycetidae; Microascales; Microascaceae; Scedosporium; Scedosporium apiospermum
no rank; cellular root; domain; clade; kingdom; subkingdom; phylum; clade; subphylum; clade; clade; class; subclass; order; family; genus; species
Fungi
16
2
3
11
107
MEDIUM
34.507943
1
CHEMBL615096
Scedosporium apiospermum
ORGANISM
null
End of preview.

YAML Metadata Warning:The task_categories "classification" is not in the official list: text-classification, token-classification, table-question-answering, question-answering, zero-shot-classification, translation, summarization, feature-extraction, text-generation, fill-mask, sentence-similarity, text-to-speech, text-to-audio, automatic-speech-recognition, audio-to-audio, audio-classification, audio-text-to-text, voice-activity-detection, depth-estimation, image-classification, object-detection, image-segmentation, text-to-image, image-to-text, image-to-image, image-to-video, unconditional-image-generation, video-classification, reinforcement-learning, robotics, tabular-classification, tabular-regression, tabular-to-text, table-to-text, multiple-choice, text-ranking, text-retrieval, time-series-forecasting, text-to-video, image-text-to-text, image-text-to-image, image-text-to-video, visual-question-answering, document-question-answering, zero-shot-image-classification, graph-ml, mask-generation, zero-shot-object-detection, text-to-3d, image-to-3d, image-feature-extraction, video-text-to-text, keypoint-detection, visual-document-retrieval, any-to-any, video-to-video, other

YAML Metadata Warning:The task_categories "information-retrieval" is not in the official list: text-classification, token-classification, table-question-answering, question-answering, zero-shot-classification, translation, summarization, feature-extraction, text-generation, fill-mask, sentence-similarity, text-to-speech, text-to-audio, automatic-speech-recognition, audio-to-audio, audio-classification, audio-text-to-text, voice-activity-detection, depth-estimation, image-classification, object-detection, image-segmentation, text-to-image, image-to-text, image-to-image, image-to-video, unconditional-image-generation, video-classification, reinforcement-learning, robotics, tabular-classification, tabular-regression, tabular-to-text, table-to-text, multiple-choice, text-ranking, text-retrieval, time-series-forecasting, text-to-video, image-text-to-text, image-text-to-image, image-text-to-video, visual-question-answering, document-question-answering, zero-shot-image-classification, graph-ml, mask-generation, zero-shot-object-detection, text-to-3d, image-to-3d, image-feature-extraction, video-text-to-text, keypoint-detection, visual-document-retrieval, any-to-any, video-to-video, other

Human Microbe Evidence Dataset

Multi-source microbial evidence dataset focused on taxa associated with human infection, disease, clinical literature, and pathogen genomic evidence.

Current release

This is an intermediate checkpoint of the pipeline.

Current stage:

PubMed discovery + NCBI Taxonomy + disease evidence + ChEMBL + NCBI Pathogen Detection indexing

Important interpretation

PubMed literature signals represent evidence of association and do not by themselves establish microbial disease causality.

ChEMBL is a bioactivity and target database and is used here as supporting evidence rather than as a pathogen catalogue.

NCBI Pathogen Detection is used primarily for genome, isolate, AMR, virulence and related pathogen metadata.

Data organization

The repository contains separate CSV tables rather than forcing all information into one very wide table.

Generated: 2026-09-16T01:38:11.198470+00:00
Downloads last month
99
Total file size:
677 MB