Hugging Face's logo

Datasets:
pzweuj
/
SchemaBio_Bundle

Languages:
Chinese
Tags:
biology
genomics
medical
bioinformatics
variant-annotation
clinical
License:
Dataset card Files
xet
 Community
pzweuj commited on
Commit
6a99d5f
·
verified ·
1 Parent(s): d3883ae

Restructure hg19/hg38 into bed/ and schema_bundle/ subfolders

Browse files
Files changed (40) hide show
  1. .gitattributes +27 -0
  2. hg19/{Gencode.GRCh37.cnvkit.target.bed → bed/Gencode.GRCh37.cnvkit.target.bed} +0 -0
  3. hg19/schema_bundle/Gencode.GRCh37.cnvkit.target.bed +3 -0
  4. hg19/{hg19.ncbiRefSeq.gtf.gz → schema_bundle/hg19.ncbiRefSeq.gtf.gz} +0 -0
  5. hg19/{hg19_AlphaMissense.v3.vcf.gz → schema_bundle/hg19_AlphaMissense.v3.vcf.gz} +0 -0
  6. hg19/{hg19_AlphaMissense.v3.vcf.gz.tbi → schema_bundle/hg19_AlphaMissense.v3.vcf.gz.tbi} +0 -0
  7. hg19/{hg19_EVOScore2.vcf.gz → schema_bundle/hg19_EVOScore2.vcf.gz} +0 -0
  8. hg19/{hg19_EVOScore2.vcf.gz.tbi → schema_bundle/hg19_EVOScore2.vcf.gz.tbi} +0 -0
  9. hg19/{hg19_civic.vcf.gz → schema_bundle/hg19_civic.vcf.gz} +0 -0
  10. hg19/{hg19_civic.vcf.gz.tbi → schema_bundle/hg19_civic.vcf.gz.tbi} +0 -0
  11. hg19/{hg19_clinvar_20260415.vcf.gz → schema_bundle/hg19_clinvar_20260415.vcf.gz} +0 -0
  12. hg19/{hg19_clinvar_20260415.vcf.gz.tbi → schema_bundle/hg19_clinvar_20260415.vcf.gz.tbi} +0 -0
  13. hg19/{hg19_cytoBand.bed.gz → schema_bundle/hg19_cytoBand.bed.gz} +0 -0
  14. hg19/{hg19_cytoBand.bed.gz.tbi → schema_bundle/hg19_cytoBand.bed.gz.tbi} +0 -0
  15. hg19/{hg19_excludeble.bed → schema_bundle/hg19_excludeble.bed} +0 -0
  16. hg19/{hg19_gnomad.v4.1.filtered.vcf.gz → schema_bundle/hg19_gnomad.v4.1.filtered.vcf.gz} +0 -0
  17. hg19/{hg19_gnomad.v4.1.filtered.vcf.gz.tbi → schema_bundle/hg19_gnomad.v4.1.filtered.vcf.gz.tbi} +0 -0
  18. hg19/{hg19_mskcc_hotspot.v2.vcf.gz → schema_bundle/hg19_mskcc_hotspot.v2.vcf.gz} +0 -0
  19. hg19/{hg19_mskcc_hotspot.v2.vcf.gz.tbi → schema_bundle/hg19_mskcc_hotspot.v2.vcf.gz.tbi} +0 -0
  20. hg19/{hg19_pangolin.vcf.gz → schema_bundle/hg19_pangolin.vcf.gz} +0 -0
  21. hg19/{hg19_pangolin.vcf.gz.tbi → schema_bundle/hg19_pangolin.vcf.gz.tbi} +0 -0
  22. hg38/{Gencode.GRCh38.cnvkit.target.bed → bed/Gencode.GRCh38.cnvkit.target.bed} +0 -0
  23. hg38/schema_bundle/Gencode.GRCh38.cnvkit.target.bed +3 -0
  24. hg38/{hg38.ncbiRefSeq.gtf.gz → schema_bundle/hg38.ncbiRefSeq.gtf.gz} +0 -0
  25. hg38/{hg38_AlphaMissense.v3.vcf.gz → schema_bundle/hg38_AlphaMissense.v3.vcf.gz} +0 -0
  26. hg38/{hg38_AlphaMissense.v3.vcf.gz.tbi → schema_bundle/hg38_AlphaMissense.v3.vcf.gz.tbi} +0 -0
  27. hg38/{hg38_EVOScore2.vcf.gz → schema_bundle/hg38_EVOScore2.vcf.gz} +0 -0
  28. hg38/{hg38_EVOScore2.vcf.gz.tbi → schema_bundle/hg38_EVOScore2.vcf.gz.tbi} +0 -0
  29. hg38/{hg38_civic.vcf.gz → schema_bundle/hg38_civic.vcf.gz} +0 -0
  30. hg38/{hg38_civic.vcf.gz.tbi → schema_bundle/hg38_civic.vcf.gz.tbi} +0 -0
  31. hg38/{hg38_clinvar_20260415.vcf.gz → schema_bundle/hg38_clinvar_20260415.vcf.gz} +0 -0
  32. hg38/{hg38_clinvar_20260415.vcf.gz.tbi → schema_bundle/hg38_clinvar_20260415.vcf.gz.tbi} +0 -0
  33. hg38/{hg38_cytoBand.bed.gz → schema_bundle/hg38_cytoBand.bed.gz} +0 -0
  34. hg38/{hg38_cytoBand.bed.gz.tbi → schema_bundle/hg38_cytoBand.bed.gz.tbi} +0 -0
  35. hg38/{hg38_excludeble.bed → schema_bundle/hg38_excludeble.bed} +0 -0
  36. hg38/{hg38_gnomad.v4.1.filtered.vcf.gz → schema_bundle/hg38_gnomad.v4.1.filtered.vcf.gz} +0 -0
  37. hg38/{hg38_gnomad.v4.1.filtered.vcf.gz.tbi → schema_bundle/hg38_gnomad.v4.1.filtered.vcf.gz.tbi} +0 -0
  38. hg38/{hg38_mskcc_hotspot.v2.vcf.gz → schema_bundle/hg38_mskcc_hotspot.v2.vcf.gz} +0 -0
  39. hg38/{hg38_pangolin.vcf.gz → schema_bundle/hg38_pangolin.vcf.gz} +0 -0
  40. hg38/{hg38_pangolin.vcf.gz.tbi → schema_bundle/hg38_pangolin.vcf.gz.tbi} +0 -0
.gitattributes CHANGED
@@ -44,3 +44,30 @@ hg38/hg38_clinvar_20260415.vcf.gz filter=lfs diff=lfs merge=lfs -text
44
  hg38/hg38_clinvar_20260415.vcf.gz.tbi filter=lfs diff=lfs merge=lfs -text
45
  hg19/homo_sapiens_merged_vep_116_GRCh37.tar.gz filter=lfs diff=lfs merge=lfs -text
46
  hg38/homo_sapiens_merged_vep_116_GRCh38.tar.gz filter=lfs diff=lfs merge=lfs -text
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
44
  hg38/hg38_clinvar_20260415.vcf.gz.tbi filter=lfs diff=lfs merge=lfs -text
45
  hg19/homo_sapiens_merged_vep_116_GRCh37.tar.gz filter=lfs diff=lfs merge=lfs -text
46
  hg38/homo_sapiens_merged_vep_116_GRCh38.tar.gz filter=lfs diff=lfs merge=lfs -text
47
+ hg19/bed/Gencode.GRCh37.cnvkit.target.bed filter=lfs diff=lfs merge=lfs -text
48
+ hg19/schema_bundle/Gencode.GRCh37.cnvkit.target.bed filter=lfs diff=lfs merge=lfs -text
49
+ hg19/schema_bundle/hg19.ncbiRefSeq.gtf.gz filter=lfs diff=lfs merge=lfs -text
50
+ hg19/schema_bundle/hg19_AlphaMissense.v3.vcf.gz filter=lfs diff=lfs merge=lfs -text
51
+ hg19/schema_bundle/hg19_AlphaMissense.v3.vcf.gz.tbi filter=lfs diff=lfs merge=lfs -text
52
+ hg19/schema_bundle/hg19_EVOScore2.vcf.gz.tbi filter=lfs diff=lfs merge=lfs -text
53
+ hg19/schema_bundle/hg19_clinvar_20260415.vcf.gz filter=lfs diff=lfs merge=lfs -text
54
+ hg19/schema_bundle/hg19_clinvar_20260415.vcf.gz.tbi filter=lfs diff=lfs merge=lfs -text
55
+ hg19/schema_bundle/hg19_gnomad.v4.1.filtered.vcf.gz filter=lfs diff=lfs merge=lfs -text
56
+ hg19/schema_bundle/hg19_gnomad.v4.1.filtered.vcf.gz.tbi filter=lfs diff=lfs merge=lfs -text
57
+ hg19/schema_bundle/hg19_mskcc_hotspot.v2.vcf.gz filter=lfs diff=lfs merge=lfs -text
58
+ hg19/schema_bundle/hg19_mskcc_hotspot.v2.vcf.gz.tbi filter=lfs diff=lfs merge=lfs -text
59
+ hg19/schema_bundle/hg19_pangolin.vcf.gz filter=lfs diff=lfs merge=lfs -text
60
+ hg19/schema_bundle/hg19_pangolin.vcf.gz.tbi filter=lfs diff=lfs merge=lfs -text
61
+ hg38/bed/Gencode.GRCh38.cnvkit.target.bed filter=lfs diff=lfs merge=lfs -text
62
+ hg38/schema_bundle/Gencode.GRCh38.cnvkit.target.bed filter=lfs diff=lfs merge=lfs -text
63
+ hg38/schema_bundle/hg38.ncbiRefSeq.gtf.gz filter=lfs diff=lfs merge=lfs -text
64
+ hg38/schema_bundle/hg38_AlphaMissense.v3.vcf.gz filter=lfs diff=lfs merge=lfs -text
65
+ hg38/schema_bundle/hg38_AlphaMissense.v3.vcf.gz.tbi filter=lfs diff=lfs merge=lfs -text
66
+ hg38/schema_bundle/hg38_EVOScore2.vcf.gz.tbi filter=lfs diff=lfs merge=lfs -text
67
+ hg38/schema_bundle/hg38_clinvar_20260415.vcf.gz filter=lfs diff=lfs merge=lfs -text
68
+ hg38/schema_bundle/hg38_clinvar_20260415.vcf.gz.tbi filter=lfs diff=lfs merge=lfs -text
69
+ hg38/schema_bundle/hg38_gnomad.v4.1.filtered.vcf.gz filter=lfs diff=lfs merge=lfs -text
70
+ hg38/schema_bundle/hg38_gnomad.v4.1.filtered.vcf.gz.tbi filter=lfs diff=lfs merge=lfs -text
71
+ hg38/schema_bundle/hg38_mskcc_hotspot.v2.vcf.gz filter=lfs diff=lfs merge=lfs -text
72
+ hg38/schema_bundle/hg38_pangolin.vcf.gz filter=lfs diff=lfs merge=lfs -text
73
+ hg38/schema_bundle/hg38_pangolin.vcf.gz.tbi filter=lfs diff=lfs merge=lfs -text
hg19/{Gencode.GRCh37.cnvkit.target.bed → bed/Gencode.GRCh37.cnvkit.target.bed} RENAMED
File without changes
hg19/schema_bundle/Gencode.GRCh37.cnvkit.target.bed ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:0375c15b2f235d335429607eed86e8fea89e283f749c0b37479d4ede9b2fbf09
3
+ size 14252419
hg19/{hg19.ncbiRefSeq.gtf.gz → schema_bundle/hg19.ncbiRefSeq.gtf.gz} RENAMED
File without changes
hg19/{hg19_AlphaMissense.v3.vcf.gz → schema_bundle/hg19_AlphaMissense.v3.vcf.gz} RENAMED
File without changes
hg19/{hg19_AlphaMissense.v3.vcf.gz.tbi → schema_bundle/hg19_AlphaMissense.v3.vcf.gz.tbi} RENAMED
File without changes
hg19/{hg19_EVOScore2.vcf.gz → schema_bundle/hg19_EVOScore2.vcf.gz} RENAMED
File without changes
hg19/{hg19_EVOScore2.vcf.gz.tbi → schema_bundle/hg19_EVOScore2.vcf.gz.tbi} RENAMED
File without changes
hg19/{hg19_civic.vcf.gz → schema_bundle/hg19_civic.vcf.gz} RENAMED
File without changes
hg19/{hg19_civic.vcf.gz.tbi → schema_bundle/hg19_civic.vcf.gz.tbi} RENAMED
File without changes
hg19/{hg19_clinvar_20260415.vcf.gz → schema_bundle/hg19_clinvar_20260415.vcf.gz} RENAMED
File without changes
hg19/{hg19_clinvar_20260415.vcf.gz.tbi → schema_bundle/hg19_clinvar_20260415.vcf.gz.tbi} RENAMED
File without changes
hg19/{hg19_cytoBand.bed.gz → schema_bundle/hg19_cytoBand.bed.gz} RENAMED
File without changes
hg19/{hg19_cytoBand.bed.gz.tbi → schema_bundle/hg19_cytoBand.bed.gz.tbi} RENAMED
File without changes
hg19/{hg19_excludeble.bed → schema_bundle/hg19_excludeble.bed} RENAMED
File without changes
hg19/{hg19_gnomad.v4.1.filtered.vcf.gz → schema_bundle/hg19_gnomad.v4.1.filtered.vcf.gz} RENAMED
File without changes
hg19/{hg19_gnomad.v4.1.filtered.vcf.gz.tbi → schema_bundle/hg19_gnomad.v4.1.filtered.vcf.gz.tbi} RENAMED
File without changes
hg19/{hg19_mskcc_hotspot.v2.vcf.gz → schema_bundle/hg19_mskcc_hotspot.v2.vcf.gz} RENAMED
File without changes
hg19/{hg19_mskcc_hotspot.v2.vcf.gz.tbi → schema_bundle/hg19_mskcc_hotspot.v2.vcf.gz.tbi} RENAMED
File without changes
hg19/{hg19_pangolin.vcf.gz → schema_bundle/hg19_pangolin.vcf.gz} RENAMED
File without changes
hg19/{hg19_pangolin.vcf.gz.tbi → schema_bundle/hg19_pangolin.vcf.gz.tbi} RENAMED
File without changes
hg38/{Gencode.GRCh38.cnvkit.target.bed → bed/Gencode.GRCh38.cnvkit.target.bed} RENAMED
File without changes
hg38/schema_bundle/Gencode.GRCh38.cnvkit.target.bed ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:33b5dafca7d0220c412716463f006e65778f737ffa3325890b68e3bf7b304f96
3
+ size 14331767
hg38/{hg38.ncbiRefSeq.gtf.gz → schema_bundle/hg38.ncbiRefSeq.gtf.gz} RENAMED
File without changes
hg38/{hg38_AlphaMissense.v3.vcf.gz → schema_bundle/hg38_AlphaMissense.v3.vcf.gz} RENAMED
File without changes
hg38/{hg38_AlphaMissense.v3.vcf.gz.tbi → schema_bundle/hg38_AlphaMissense.v3.vcf.gz.tbi} RENAMED
File without changes
hg38/{hg38_EVOScore2.vcf.gz → schema_bundle/hg38_EVOScore2.vcf.gz} RENAMED
File without changes
hg38/{hg38_EVOScore2.vcf.gz.tbi → schema_bundle/hg38_EVOScore2.vcf.gz.tbi} RENAMED
File without changes
hg38/{hg38_civic.vcf.gz → schema_bundle/hg38_civic.vcf.gz} RENAMED
File without changes
hg38/{hg38_civic.vcf.gz.tbi → schema_bundle/hg38_civic.vcf.gz.tbi} RENAMED
File without changes
hg38/{hg38_clinvar_20260415.vcf.gz → schema_bundle/hg38_clinvar_20260415.vcf.gz} RENAMED
File without changes
hg38/{hg38_clinvar_20260415.vcf.gz.tbi → schema_bundle/hg38_clinvar_20260415.vcf.gz.tbi} RENAMED
File without changes
hg38/{hg38_cytoBand.bed.gz → schema_bundle/hg38_cytoBand.bed.gz} RENAMED
File without changes
hg38/{hg38_cytoBand.bed.gz.tbi → schema_bundle/hg38_cytoBand.bed.gz.tbi} RENAMED
File without changes
hg38/{hg38_excludeble.bed → schema_bundle/hg38_excludeble.bed} RENAMED
File without changes
hg38/{hg38_gnomad.v4.1.filtered.vcf.gz → schema_bundle/hg38_gnomad.v4.1.filtered.vcf.gz} RENAMED
File without changes
hg38/{hg38_gnomad.v4.1.filtered.vcf.gz.tbi → schema_bundle/hg38_gnomad.v4.1.filtered.vcf.gz.tbi} RENAMED
File without changes
hg38/{hg38_mskcc_hotspot.v2.vcf.gz → schema_bundle/hg38_mskcc_hotspot.v2.vcf.gz} RENAMED
File without changes
hg38/{hg38_pangolin.vcf.gz → schema_bundle/hg38_pangolin.vcf.gz} RENAMED
File without changes
hg38/{hg38_pangolin.vcf.gz.tbi → schema_bundle/hg38_pangolin.vcf.gz.tbi} RENAMED
File without changes