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@@ -992,13 +992,47 @@ The models that produced these predictions are at
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  [saarantras1/MPAC](https://huggingface.co/saarantras1/MPAC); the MPRA training data
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  is at [saarantras1/mpac-mpra](https://huggingface.co/saarantras1/mpac-mpra).
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- ## Columns
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- `File Descriptions.xlsx` in this repository documents the columns of every table. It
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- is the upstream dictionary from the MPAC authors, with two sheets added here
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- (`gwas tag snvs ld`, `promoter sat mut annotated`) covering tables it did not
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- describe, and one correction: the gnomAD `id` column is an rsID where one exists and
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- `.` otherwise, not an ENCODE enhancer ID.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  ## Names that differ from Zenodo
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  [saarantras1/MPAC](https://huggingface.co/saarantras1/MPAC); the MPRA training data
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  is at [saarantras1/mpac-mpra](https://huggingface.co/saarantras1/mpac-mpra).
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+ Supplemental data and resources for "Identifying non-coding variant effects at scale via machine learning models of cis-regulatory reporter assays"
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+ Including:
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+
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+ MPAC and comparison model predictions for:
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+ Siraj 2026 (UKBB/BBJ/GTEx) MPRA (Supplementary Dataset 1)
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+ DNase allele specific effects (Supplementary Dataset 2)
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+ ClinVar (20260104) (Supplementary Dataset 3)
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+ COSMIC (v98) (Supplementary Dataset 4)
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+ GWAS tag SNVs + LD variants (Supplementary Dataset 6)
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+ Haplotype analyses (Supplementary Dataset 7)
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+ gnomAD (v3.1.2 SNPs and and small indels) (Supplementary Dataset 8)
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+ Saturation mutagenesis of human promoters (Supplementary Dataset 9)
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+ Saturation mutagenesis ENCODE dELSs (Supplementary Dataset 12)
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+ Supplemental Tables for:
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+ Recurrent COSMIC v98 emVar candidate drivers (Supplementary Dataset 5)
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+ Promoter level function x constraint relationships (Supplementary Dataset 10)
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+ Functional enrichments for promoter level function x constraint relationships (Supplementary Dataset 11)
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+ GTEx phenocopying results (Supplementary Dataset 13)
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+ All promoter and dELS seqlets (Supplementary Dataset 14)
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+ Model hyperparameters (Supplementary Dataset 15)
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+ All MPAC model artifacts (Supplementary Dataset 16)
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+ Detailed descriptions for all predictions and supplemental tables can be found in 'File Descriptions.xlsx'
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  ## Names that differ from Zenodo
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