Upload 17 files
#3
by buttsjoc - opened
- .gitattributes +2 -0
- File Descriptions.xlsx +0 -0
- Supplementary_Dataset_1.zip +3 -0
- Supplementary_Dataset_10.xlsx +3 -0
- Supplementary_Dataset_11.xlsx +3 -0
- Supplementary_Dataset_12.zip +3 -0
- Supplementary_Dataset_13.txt +88 -0
- Supplementary_Dataset_14.zip +3 -0
- Supplementary_Dataset_15.xlsx +0 -0
- Supplementary_Dataset_16.zip +3 -0
- Supplementary_Dataset_2.zip +3 -0
- Supplementary_Dataset_3.zip +3 -0
- Supplementary_Dataset_4.zip +3 -0
- Supplementary_Dataset_5.tsv +0 -0
- Supplementary_Dataset_6.tsv.gz +3 -0
- Supplementary_Dataset_7.zip +3 -0
- Supplementary_Dataset_8.zip +3 -0
- Supplementary_Dataset_9.zip +3 -0
.gitattributes
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mpac_clinvar/all_clinvar_20260104_sei_dnase_preds_k562_hepg2_sknsh.tsv filter=lfs diff=lfs merge=lfs -text
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mpac_cosmic/all.cosmic.v98.autosome.with.10bp.indels.annotated.017.tsv filter=lfs diff=lfs merge=lfs -text
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mpac_cosmic/cosmic_v98_mpac_analysis_set.tsv filter=lfs diff=lfs merge=lfs -text
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mpac_clinvar/all_clinvar_20260104_sei_dnase_preds_k562_hepg2_sknsh.tsv filter=lfs diff=lfs merge=lfs -text
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mpac_cosmic/all.cosmic.v98.autosome.with.10bp.indels.annotated.017.tsv filter=lfs diff=lfs merge=lfs -text
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mpac_cosmic/cosmic_v98_mpac_analysis_set.tsv filter=lfs diff=lfs merge=lfs -text
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Supplementary_Dataset_10.xlsx filter=lfs diff=lfs merge=lfs -text
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Supplementary_Dataset_11.xlsx filter=lfs diff=lfs merge=lfs -text
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File Descriptions.xlsx
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Supplementary_Dataset_1.zip
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Supplementary_Dataset_10.xlsx
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Supplementary_Dataset_11.xlsx
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Supplementary_Dataset_12.zip
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Supplementary_Dataset_13.txt
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variant_id eQTL_emVar_id eQTL_tissue cell_type variant_tag Z_eQTL_emVar Z_PC-variant Z_non-emVar
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chr12_496708_G_C_b38 chr12_496721_T_C_b38 Thyroid sknsh non-emVar NaN NaN 0.2085
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| 3 |
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chr12_496878_G_A_b38 chr12_496721_T_C_b38 Thyroid sknsh non-emVar NaN NaN -1.1392
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| 4 |
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chr12_497023_C_T_b38 chr12_496721_T_C_b38 Thyroid sknsh non-emVar NaN NaN 0.1228
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| 5 |
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chr12_496721_T_C_b38 chr12_496721_T_C_b38 Thyroid sknsh eQTL_emVar -0.0962 NaN NaN
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| 6 |
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chr12_496724_G_A_b38 chr12_496721_T_C_b38 Thyroid sknsh PC-variant NaN -0.6525 NaN
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| 7 |
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chr12_95628323_G_C_b38 chr12_95628323_G_C_b38 Brain_Caudate_basal_ganglia k562 eQTL_emVar -0.1847 NaN NaN
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| 8 |
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chr12_95628107_G_A_b38 chr12_95628323_G_C_b38 Brain_Caudate_basal_ganglia k562 PC-variant NaN -2.1672 NaN
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| 9 |
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chr16_89175051_A_C_b38 chr16_89175007_C_T_b38 Nerve_Tibial k562 non-emVar NaN NaN -0.9963
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| 10 |
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chr16_89175221_T_G_b38 chr16_89175007_C_T_b38 Nerve_Tibial k562 non-emVar NaN NaN -1.0761
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| 11 |
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chr16_89175007_C_T_b38 chr16_89175007_C_T_b38 Nerve_Tibial k562 eQTL_emVar -0.5934 NaN NaN
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| 12 |
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chr16_89175020_C_T_b38 chr16_89175007_C_T_b38 Nerve_Tibial k562 PC-variant NaN -1.8319 NaN
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| 13 |
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chr16_89175009_C_T_b38 chr16_89175007_C_T_b38 Nerve_Tibial sknsh non-emVar NaN NaN 0.0410
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| 14 |
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chr16_89175051_A_C_b38 chr16_89175007_C_T_b38 Nerve_Tibial sknsh non-emVar NaN NaN -0.9938
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chr16_89175221_T_G_b38 chr16_89175007_C_T_b38 Nerve_Tibial sknsh non-emVar NaN NaN -1.0734
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| 16 |
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chr16_89175007_C_T_b38 chr16_89175007_C_T_b38 Nerve_Tibial sknsh eQTL_emVar -0.5919 NaN NaN
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| 17 |
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chr16_89175020_C_T_b38 chr16_89175007_C_T_b38 Nerve_Tibial sknsh PC-variant NaN -1.8275 NaN
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chr17_66952125_G_A_b38 chr17_66952169_A_G_b38 Lung k562 non-emVar NaN NaN 0.3144
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| 19 |
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chr17_66952132_T_C_b38 chr17_66952169_A_G_b38 Lung k562 non-emVar NaN NaN 0.1916
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| 20 |
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chr17_66952442_C_T_b38 chr17_66952169_A_G_b38 Lung k562 non-emVar NaN NaN -0.9338
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| 21 |
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chr17_66952169_A_G_b38 chr17_66952169_A_G_b38 Lung k562 eQTL_emVar -0.6802 NaN NaN
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| 22 |
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chr17_66952195_G_A_b38 chr17_66952169_A_G_b38 Lung k562 PC-variant NaN -2.0378 NaN
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| 23 |
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chr19_53087103_C_T_b38 chr19_53087254_G_A_b38 Adipose_Visceral_Omentum sknsh non-emVar NaN NaN -0.5820
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| 24 |
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chr19_53087112_T_C_b38 chr19_53087254_G_A_b38 Adipose_Visceral_Omentum sknsh non-emVar NaN NaN -0.3840
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| 25 |
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chr19_53087254_G_A_b38 chr19_53087254_G_A_b38 Adipose_Visceral_Omentum sknsh eQTL_emVar -0.4412 NaN NaN
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| 26 |
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chr19_53087175_A_T_b38 chr19_53087254_G_A_b38 Adipose_Visceral_Omentum sknsh PC-variant NaN -1.3333 NaN
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| 27 |
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chr19_53087103_C_T_b38 chr19_53087254_G_A_b38 Breast_Mammary_Tissue sknsh non-emVar NaN NaN -0.0761
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| 28 |
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chr19_53087112_T_C_b38 chr19_53087254_G_A_b38 Breast_Mammary_Tissue sknsh non-emVar NaN NaN -0.0810
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| 29 |
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chr19_53087254_G_A_b38 chr19_53087254_G_A_b38 Breast_Mammary_Tissue sknsh eQTL_emVar -0.3637 NaN NaN
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| 30 |
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chr19_53087175_A_T_b38 chr19_53087254_G_A_b38 Breast_Mammary_Tissue sknsh PC-variant NaN -0.6263 NaN
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| 31 |
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chr19_53087103_C_T_b38 chr19_53087254_G_A_b38 Lung sknsh non-emVar NaN NaN -0.5178
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| 32 |
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chr19_53087112_T_C_b38 chr19_53087254_G_A_b38 Lung sknsh non-emVar NaN NaN -0.3408
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| 33 |
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chr19_53087254_G_A_b38 chr19_53087254_G_A_b38 Lung sknsh eQTL_emVar -0.4707 NaN NaN
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| 34 |
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chr19_53087175_A_T_b38 chr19_53087254_G_A_b38 Lung sknsh PC-variant NaN -0.7968 NaN
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| 35 |
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chr19_53087103_C_T_b38 chr19_53087254_G_A_b38 Muscle_Skeletal sknsh non-emVar NaN NaN 0.3435
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| 36 |
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chr19_53087112_T_C_b38 chr19_53087254_G_A_b38 Muscle_Skeletal sknsh non-emVar NaN NaN -0.5522
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| 37 |
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chr19_53087254_G_A_b38 chr19_53087254_G_A_b38 Muscle_Skeletal sknsh eQTL_emVar -0.5261 NaN NaN
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| 38 |
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chr19_53087175_A_T_b38 chr19_53087254_G_A_b38 Muscle_Skeletal sknsh PC-variant NaN -0.8026 NaN
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| 39 |
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chr19_53087103_C_T_b38 chr19_53087254_G_A_b38 Nerve_Tibial sknsh non-emVar NaN NaN 0.1789
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chr19_53087112_T_C_b38 chr19_53087254_G_A_b38 Nerve_Tibial sknsh non-emVar NaN NaN -0.0277
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| 41 |
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chr19_53087254_G_A_b38 chr19_53087254_G_A_b38 Nerve_Tibial sknsh eQTL_emVar -0.3591 NaN NaN
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| 42 |
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chr19_53087175_A_T_b38 chr19_53087254_G_A_b38 Nerve_Tibial sknsh PC-variant NaN -0.4973 NaN
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| 43 |
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chr19_53087103_C_T_b38 chr19_53087254_G_A_b38 Spleen sknsh non-emVar NaN NaN -0.9555
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| 44 |
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chr19_53087112_T_C_b38 chr19_53087254_G_A_b38 Spleen sknsh non-emVar NaN NaN 0.7132
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| 45 |
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chr19_53087254_G_A_b38 chr19_53087254_G_A_b38 Spleen sknsh eQTL_emVar -0.4852 NaN NaN
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| 46 |
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chr19_53087175_A_T_b38 chr19_53087254_G_A_b38 Spleen sknsh PC-variant NaN -1.4814 NaN
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| 47 |
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chr19_53087103_C_T_b38 chr19_53087254_G_A_b38 Thyroid sknsh non-emVar NaN NaN 0.9303
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| 48 |
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chr19_53087112_T_C_b38 chr19_53087254_G_A_b38 Thyroid sknsh non-emVar NaN NaN 0.2242
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| 49 |
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chr19_53087254_G_A_b38 chr19_53087254_G_A_b38 Thyroid sknsh eQTL_emVar -0.2134 NaN NaN
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| 50 |
+
chr19_53087175_A_T_b38 chr19_53087254_G_A_b38 Thyroid sknsh PC-variant NaN -1.5154 NaN
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| 51 |
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chr19_7707268_C_A_b38 chr19_7707287_G_C_b38 Nerve_Tibial hepg2 non-emVar NaN NaN 1.7179
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| 52 |
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chr19_7707287_G_C_b38 chr19_7707287_G_C_b38 Nerve_Tibial hepg2 eQTL_emVar -0.3521 NaN NaN
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| 53 |
+
chr19_7707286_C_T_b38 chr19_7707287_G_C_b38 Nerve_Tibial hepg2 PC-variant NaN -0.9985 NaN
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| 54 |
+
chr19_7707268_C_A_b38 chr19_7707287_G_C_b38 Nerve_Tibial k562 non-emVar NaN NaN 1.7179
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| 55 |
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chr19_7707287_G_C_b38 chr19_7707287_G_C_b38 Nerve_Tibial k562 eQTL_emVar -0.3521 NaN NaN
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| 56 |
+
chr19_7707286_C_T_b38 chr19_7707287_G_C_b38 Nerve_Tibial k562 PC-variant NaN -0.9985 NaN
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| 57 |
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chr19_7707268_C_A_b38 chr19_7707287_G_C_b38 Nerve_Tibial sknsh non-emVar NaN NaN 1.7179
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| 58 |
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chr19_7707287_G_C_b38 chr19_7707287_G_C_b38 Nerve_Tibial sknsh eQTL_emVar -0.3521 NaN NaN
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| 59 |
+
chr19_7707286_C_T_b38 chr19_7707287_G_C_b38 Nerve_Tibial sknsh PC-variant NaN -0.9985 NaN
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| 60 |
+
chr1_26352191_G_A_b38 chr1_26352039_G_T_b38 Skin_Sun_Exposed_Lower_leg k562 non-emVar NaN NaN 0.1064
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| 61 |
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chr1_26352039_G_T_b38 chr1_26352039_G_T_b38 Skin_Sun_Exposed_Lower_leg k562 eQTL_emVar -0.5467 NaN NaN
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| 62 |
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chr1_26352054_G_A_b38 chr1_26352039_G_T_b38 Skin_Sun_Exposed_Lower_leg k562 PC-variant NaN -1.2794 NaN
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| 63 |
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chr22_46573601_C_T_b38 chr22_46573655_C_A_b38 Pancreas k562 non-emVar NaN NaN 1.5148
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| 64 |
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chr22_46573713_G_A_b38 chr22_46573655_C_A_b38 Pancreas k562 non-emVar NaN NaN 0.6193
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| 65 |
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chr22_46573743_G_T_b38 chr22_46573655_C_A_b38 Pancreas k562 non-emVar NaN NaN -0.3810
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| 66 |
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chr22_46573655_C_A_b38 chr22_46573655_C_A_b38 Pancreas k562 eQTL_emVar -0.2338 NaN NaN
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| 67 |
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chr22_46573636_T_C_b38 chr22_46573655_C_A_b38 Pancreas k562 PC-variant NaN -0.8937 NaN
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| 68 |
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chr3_15293311_T_G_b38 chr3_15293390_C_T_b38 Artery_Tibial k562 non-emVar NaN NaN -0.1381
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| 69 |
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chr3_15293352_C_A_b38 chr3_15293390_C_T_b38 Artery_Tibial k562 non-emVar NaN NaN -0.3444
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| 70 |
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chr3_15293394_G_A_b38 chr3_15293390_C_T_b38 Artery_Tibial k562 non-emVar NaN NaN -0.1741
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| 71 |
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chr3_15293439_C_G_b38 chr3_15293390_C_T_b38 Artery_Tibial k562 non-emVar NaN NaN -0.3398
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| 72 |
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chr3_15293390_C_T_b38 chr3_15293390_C_T_b38 Artery_Tibial k562 eQTL_emVar -0.1965 NaN NaN
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| 73 |
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chr3_15293241_C_T_b38 chr3_15293390_C_T_b38 Artery_Tibial k562 PC-variant NaN -0.3873 NaN
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| 74 |
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chr5_80070004_G_A_b38 chr5_80070257_T_C_b38 Whole_Blood hepg2 non-emVar NaN NaN -0.9049
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| 75 |
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chr5_80070294_T_C_b38 chr5_80070257_T_C_b38 Whole_Blood hepg2 non-emVar NaN NaN 0.8171
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| 76 |
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chr5_80070257_T_C_b38 chr5_80070257_T_C_b38 Whole_Blood hepg2 eQTL_emVar -0.2834 NaN NaN
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| 77 |
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chr5_80070175_C_T_b38 chr5_80070257_T_C_b38 Whole_Blood hepg2 PC-variant NaN -0.6195 NaN
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| 78 |
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chr5_80070004_G_A_b38 chr5_80070257_T_C_b38 Whole_Blood sknsh non-emVar NaN NaN -0.9049
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| 79 |
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chr5_80070294_T_C_b38 chr5_80070257_T_C_b38 Whole_Blood sknsh non-emVar NaN NaN 0.8171
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| 80 |
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chr5_80070257_T_C_b38 chr5_80070257_T_C_b38 Whole_Blood sknsh eQTL_emVar -0.2834 NaN NaN
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| 81 |
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chr5_80070175_C_T_b38 chr5_80070257_T_C_b38 Whole_Blood sknsh PC-variant NaN -0.6195 NaN
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| 82 |
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chr7_100035209_T_C_b38 chr7_100035359_T_C_b38 Cells_Cultured_fibroblasts sknsh non-emVar NaN NaN 0.2139
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| 83 |
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chr7_100035359_T_C_b38 chr7_100035359_T_C_b38 Cells_Cultured_fibroblasts sknsh eQTL_emVar -0.1000 NaN NaN
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| 84 |
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chr7_100035318_G_A_b38 chr7_100035359_T_C_b38 Cells_Cultured_fibroblasts sknsh PC-variant NaN -0.6229 NaN
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| 85 |
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chr7_128381575_T_C_b38 chr7_128381575_T_C_b38 Esophagus_Gastroesophageal_Junction k562 eQTL_emVar -0.2504 NaN NaN
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| 86 |
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chr7_128381594_G_A_b38 chr7_128381575_T_C_b38 Esophagus_Gastroesophageal_Junction k562 PC-variant NaN -0.2534 NaN
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| 87 |
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chr7_128381575_T_C_b38 chr7_128381575_T_C_b38 Esophagus_Gastroesophageal_Junction sknsh eQTL_emVar -0.2504 NaN NaN
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| 88 |
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chr7_128381594_G_A_b38 chr7_128381575_T_C_b38 Esophagus_Gastroesophageal_Junction sknsh PC-variant NaN -0.2534 NaN
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