script/extract_all.sh

#!/bin/bash
# Script to automatically extract all compressed files in the dataset directories
# Handles: .zip, .zip.zip, split .z01/.z02, split .001/.002, .tar.gz, split .tar.gz.00/.01, etc.

# Don't exit on error - we want to continue processing even if some extractions fail

# Configuration
SEVENZ="/ocean/projects/cis220031p/shan1/7z/7zz"
BASE_DIR="/ocean/projects/cis220031p/shan1/data_ck/deepfake_dataset/compress/test"
LOG_FILE="${BASE_DIR}/extraction.log"

# Colors for output
RED='\033[0;31m'
GREEN='\033[0;32m'
YELLOW='\033[1;33m'
BLUE='\033[0;34m'
NC='\033[0m' # No Color

# Logging function
log() {
    echo -e "$(date '+%Y-%m-%d %H:%M:%S') - $1" | tee -a "$LOG_FILE"
}

log_error() {
    echo -e "${RED}$(date '+%Y-%m-%d %H:%M:%S') - ERROR: $1${NC}" | tee -a "$LOG_FILE"
}

log_success() {
    echo -e "${GREEN}$(date '+%Y-%m-%d %H:%M:%S') - SUCCESS: $1${NC}" | tee -a "$LOG_FILE"
}

log_warning() {
    echo -e "${YELLOW}$(date '+%Y-%m-%d %H:%M:%S') - WARNING: $1${NC}" | tee -a "$LOG_FILE"
}

log_info() {
    echo -e "${BLUE}$(date '+%Y-%m-%d %H:%M:%S') - INFO: $1${NC}" | tee -a "$LOG_FILE"
}

# Check if 7zz exists
if [ ! -f "$SEVENZ" ]; then
    log_error "7zz not found at $SEVENZ"
    exit 1
fi

# Make 7zz executable
chmod +x "$SEVENZ" 2>/dev/null || true

log_info "Starting extraction process..."
log_info "Using 7zz at: $SEVENZ"
log_info "Base directory: $BASE_DIR"

cd "$BASE_DIR" || exit 1

# Track processed files to avoid duplicate processing
declare -A processed_files

# Function to check if file is a split archive part
is_split_part() {
    local file="$1"
    # Check for .z01, .z02, etc.
    if [[ "$file" =~ \.(z[0-9]{2})$ ]]; then
        return 0
    fi
    # Check for .001, .002, etc.
    if [[ "$file" =~ \.([0-9]{3})$ ]]; then
        return 0
    fi
    # Check for .00, .01, etc. (for tar.gz splits)
    if [[ "$file" =~ \.([0-9]{2})$ ]]; then
        return 0
    fi
    return 1
}

# Function to extract split zip files (.z01, .z02, etc.)
extract_split_zip() {
    local dir="$1"
    local base_name="$2"
    local first_file="${dir}/${base_name}.z01"
    local zip_file="${dir}/${base_name}.zip"
    
    log_info "Extracting split zip: ${base_name}.zip (.z01-.zXX format)"
    
    if [ -f "$zip_file" ]; then
        # Use the .zip file to extract (it contains the archive info)
        if "$SEVENZ" x "$zip_file" -o"${dir}/" -y >/dev/null 2>&1; then
            log_success "Extracted split zip: ${base_name}.zip"
            return 0
        else
            log_error "Failed to extract split zip: ${base_name}.zip"
            return 1
        fi
    else
        log_warning "Main zip file not found for split archive: ${base_name}"
        return 1
    fi
}

# Function to extract split zip files (.001, .002, etc. or .zip.001, .zip.002)
extract_split_zip_001() {
    local dir="$1"
    local base_name="$2"
    local first_file=""
    
    # Check if it's .zip.001 format
    if [ -f "${dir}/${base_name}.zip.001" ]; then
        first_file="${dir}/${base_name}.zip.001"
        log_info "Extracting split zip: ${base_name}.zip.001 (.zip.001-.zip.XXX format)"
    # Check if it's just .001 format (without .zip prefix)
    elif [ -f "${dir}/${base_name}.001" ]; then
        first_file="${dir}/${base_name}.001"
        log_info "Extracting split zip: ${base_name}.001 (.001-.XXX format)"
    else
        log_warning "First split file not found for: ${base_name}"
        return 1
    fi
    
    if "$SEVENZ" x "$first_file" -o"${dir}/" -y >/dev/null 2>&1; then
        log_success "Extracted split zip: $(basename "$first_file")"
        return 0
    else
        log_error "Failed to extract split zip: $(basename "$first_file")"
        return 1
    fi
}

# Function to combine and extract split tar.gz files
extract_split_targz() {
    local dir="$1"
    local base_name="$2"
    local output_file="${dir}/${base_name}.tar.gz"
    
    log_info "Combining and extracting split tar.gz: ${base_name}.tar.gz.00-.XX"
    
    # Find all split parts (format: base_name.tar.gz.00, .01, etc.)
    local parts=()
    local part_num=0
    while [ -f "${dir}/${base_name}.tar.gz.$(printf "%02d" $part_num)" ]; do
        parts+=("${dir}/${base_name}.tar.gz.$(printf "%02d" $part_num)")
        part_num=$((part_num + 1))
    done
    
    if [ ${#parts[@]} -eq 0 ]; then
        log_warning "No split parts found for: ${base_name}"
        return 1
    fi
    
    log_info "Found ${#parts[@]} split parts for ${base_name}.tar.gz"
    
    # Combine split parts
    log_info "Combining split parts into ${base_name}.tar.gz..."
    cat "${parts[@]}" > "$output_file" 2>/dev/null
    
    if [ $? -eq 0 ] && [ -f "$output_file" ]; then
        log_success "Combined split parts into ${base_name}.tar.gz"
        
        # Extract the combined tar.gz
        log_info "Extracting ${base_name}.tar.gz..."
        if tar -xzf "$output_file" -C "$dir" 2>/dev/null; then
            log_success "Extracted ${base_name}.tar.gz"
            # Optionally remove the combined file to save space
            # rm "$output_file"
            return 0
        else
            log_error "Failed to extract ${base_name}.tar.gz"
            return 1
        fi
    else
        log_error "Failed to combine split parts for ${base_name}.tar.gz"
        return 1
    fi
}

# Function to extract double zip files (.zip.zip)
extract_double_zip() {
    local file="$1"
    local dir=$(dirname "$file")
    local filename=$(basename "$file")
    local temp_zip="${dir}/${filename%.zip}"
    
    log_warning "Found double zip file: ${filename} - will extract twice"
    
    # First extraction: .zip.zip -> .zip
    log_info "First extraction: ${filename} -> ${filename%.zip}"
    if "$SEVENZ" x "$file" -o"${dir}/" -y >/dev/null 2>&1; then
        log_success "First extraction completed: ${filename}"
        
        # Second extraction: .zip -> contents
        if [ -f "$temp_zip" ]; then
            log_info "Second extraction: $(basename "$temp_zip") -> contents"
            if "$SEVENZ" x "$temp_zip" -o"${dir}/" -y >/dev/null 2>&1; then
                log_success "Second extraction completed: $(basename "$temp_zip")"
                # Remove intermediate .zip file
                rm -f "$temp_zip"
                return 0
            else
                log_error "Second extraction failed: $(basename "$temp_zip")"
                return 1
            fi
        else
            log_warning "Intermediate zip file not found after first extraction"
            return 1
        fi
    else
        log_error "First extraction failed: ${filename}"
        return 1
    fi
}

# Function to extract regular zip file
extract_zip() {
    local file="$1"
    local dir=$(dirname "$file")
    
    log_info "Extracting zip: $(basename "$file")"
    
    if "$SEVENZ" x "$file" -o"${dir}/" -y >/dev/null 2>&1; then
        log_success "Extracted: $(basename "$file")"
        return 0
    else
        log_error "Failed to extract: $(basename "$file")"
        return 1
    fi
}

# Function to extract regular tar.gz file
extract_targz() {
    local file="$1"
    local dir=$(dirname "$file")
    
    log_info "Extracting tar.gz: $(basename "$file")"
    
    if tar -xzf "$file" -C "$dir" 2>/dev/null; then
        log_success "Extracted: $(basename "$file")"
        return 0
    else
        log_error "Failed to extract: $(basename "$file")"
        return 1
    fi
}

# Process each directory
process_directory() {
    local dir="$1"
    log_info "Processing directory: $(basename "$dir")"
    
    cd "$dir" || return 1
    
    # Track which archives we've already processed
    declare -A processed_archives
    
    # Find all archive files
    while IFS= read -r file; do
        local filename=$(basename "$file")
        local filepath="$file"
        
        # Skip if already processed
        if [ -n "${processed_files[$filepath]}" ]; then
            continue
        fi
        
        # Skip label files and other non-archive files
        if [[ "$filename" =~ \.(txt|pdf|LICENSE)$ ]]; then
            continue
        fi
        
        # Handle double zip files (.zip.zip)
        if [[ "$filename" =~ \.zip\.zip$ ]]; then
            processed_files["$filepath"]=1
            extract_double_zip "$filepath"
            continue
        fi
        
        # Handle split tar.gz files with .00, .01 format (process first)
        if [[ "$filename" =~ \.tar\.gz\.([0-9]{2})$ ]]; then
            local base_name="${filename%.tar.gz.*}"
            if [ -z "${processed_archives["${base_name}_targz"]}" ]; then
                processed_archives["${base_name}_targz"]=1
                extract_split_targz "$dir" "$base_name"
            fi
            continue
        fi
        
        # Handle split zip files with .z01, .z02 format
        # Process the main .zip file when we encounter it
        if [[ "$filename" =~ \.zip$ ]]; then
            local base_name="${filename%.zip}"
            # Check if this is part of a split archive with .z01, .z02 format
            if [ -f "${dir}/${base_name}.z01" ]; then
                if [ -z "${processed_archives["${base_name}_z01"]}" ]; then
                    processed_archives["${base_name}_z01"]=1
                    extract_split_zip "$dir" "$base_name"
                fi
                continue
            fi
        fi
        
        # Handle split zip files with .zip.001, .zip.002 format
        if [[ "$filename" =~ \.zip\.([0-9]{3})$ ]]; then
            local base_name="${filename%.zip.*}"
            if [ -z "${processed_archives["${base_name}_zip001"]}" ]; then
                processed_archives["${base_name}_zip001"]=1
                extract_split_zip_001 "$dir" "$base_name"
            fi
            continue
        fi
        
        # Handle split zip files with .001, .002 format (not .zip.001)
        if [[ "$filename" =~ \.([0-9]{3})$ ]] && [[ ! "$filename" =~ \.zip\.([0-9]{3})$ ]]; then
            local base_name="${filename%.*}"
            if [ -z "${processed_archives["${base_name}_001"]}" ]; then
                processed_archives["${base_name}_001"]=1
                extract_split_zip_001 "$dir" "$base_name"
            fi
            continue
        fi
        
        # Handle split zip parts with .z01, .z02 (skip, already processed via main .zip)
        if [[ "$filename" =~ \.(z[0-9]{2})$ ]]; then
            continue
        fi
        
        # Handle regular zip files
        if [[ "$filename" =~ \.zip$ ]]; then
            # Already checked for split archives above, so this is a regular zip
            processed_files["$filepath"]=1
            extract_zip "$filepath"
            continue
        fi
        
        # Handle regular tar.gz files (but skip if it's part of a split archive)
        if [[ "$filename" =~ \.tar\.gz$ ]]; then
            # Check if this is part of a split tar.gz
            local base_name="${filename%.tar.gz}"
            if [ -f "${dir}/${base_name}.tar.gz.00" ]; then
                continue
            fi
            processed_files["$filepath"]=1
            extract_targz "$filepath"
            continue
        fi
        
    done < <(find . -maxdepth 1 -type f | sort)
    
    cd "$BASE_DIR" || exit 1
}

# Main execution
main() {
    log_info "=== Starting Extraction Process ==="
    
    # Create log file
    touch "$LOG_FILE"
    
    # Process each dataset directory
    for dir in "$BASE_DIR"/*/; do
        if [ -d "$dir" ]; then
            process_directory "$dir"
        fi
    done
    
    log_info "=== Extraction Process Complete ==="
    log_info "Log file saved at: $LOG_FILE"
    
    # Summary
    echo ""
    echo -e "${GREEN}=== Extraction Summary ===${NC}"
    echo -e "Success logs: $(grep -c "SUCCESS" "$LOG_FILE" 2>/dev/null || echo 0)"
    echo -e "Error logs: $(grep -c "ERROR" "$LOG_FILE" 2>/dev/null || echo 0)"
    echo -e "Warning logs: $(grep -c "WARNING" "$LOG_FILE" 2>/dev/null || echo 0)"
}

# Run main function
main