Add files using upload-large-folder tool

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8__f0a1be6d8d61.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:conch_v1",
+    "last_updated_at": "2026-08-28T23:15:46+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579308/wsi-cache-15579308/gpu_0/batch_52/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.svs__f0a1be6d8d61",
+    "name": "TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v1": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 10760,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/patches/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v1": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
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+          "duration_s": 17.507160663604736,
+          "error": null,
+          "finished_at": "2026-08-28T23:15:46+0200",
+          "finished_epoch": 1787951746.0146582,
+          "result": "completed",
+          "started_at": "2026-08-28T23:15:28+0200",
+          "started_epoch": 1787951728.5074975
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 10760,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/patches/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8_patches.h5"
+        },
+        "features_path": {
+          "bytes": 43736,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/features_conch_v1/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 115496,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:15:46+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8__fb8d4cafe9ed.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:conch_v1",
+    "last_updated_at": "2026-08-28T22:06:26+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579307/wsi-cache-15579307/gpu_0/batch_52/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.svs__fb8d4cafe9ed",
+    "name": "TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v1": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 11128,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/patches/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v1": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "62f27ecf5bf3",
+          "duration_s": 14.073333978652954,
+          "error": null,
+          "finished_at": "2026-08-28T22:06:26+0200",
+          "finished_epoch": 1787947586.8438327,
+          "result": "completed",
+          "started_at": "2026-08-28T22:06:12+0200",
+          "started_epoch": 1787947572.7704988
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 11128,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/patches/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8_patches.h5"
+        },
+        "features_path": {
+          "bytes": 91208,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/features_conch_v1/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 115496,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:06:26+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11__2d499d34f46f.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
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+      68403
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+    "level_count": 4,
+    "mag": 40,
+    "mpp": 0.252
+  },
+  "resume": {
+    "last_status": "completed",
+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-28T22:56:30+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579309/wsi-cache-15579309/gpu_0/batch_52/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.svs__2d499d34f46f",
+    "name": "TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 56816,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "0d9add7b93b4",
+          "duration_s": 112.0071632862091,
+          "error": null,
+          "finished_at": "2026-08-28T22:51:13+0200",
+          "finished_epoch": 1787950273.9371276,
+          "result": "completed",
+          "started_at": "2026-08-28T22:49:21+0200",
+          "started_epoch": 1787950161.9299643
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 56816,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11_patches.h5"
+        },
+        "features_path": {
+          "bytes": 2264984,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 200119,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "57713f6d9220",
+          "duration_s": 0.14353346824645996,
+          "error": null,
+          "finished_at": "2026-08-28T22:56:30+0200",
+          "finished_epoch": 1787950590.989868,
+          "result": "completed",
+          "started_at": "2026-08-28T22:56:30+0200",
+          "started_epoch": 1787950590.8463345
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 2264984,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.h5"
+        },
+        "slide_features_path": {
+          "bytes": 89992,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/slide_features_titan/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:56:30+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11__3c11d9a5fe63.json

@@ -1,9 +1,9 @@
 {
   "meta": {},
   "resume": {
-    "last_status": "skipped",
+    "last_status": "completed",
     "last_task": "coords",
-    "last_updated_at": "2026-08-26T07:42:07+0200"
+    "last_updated_at": "2026-08-28T15:40:15+0200"
   },
   "schema_version": 2,
   "slide": {
@@ -15,7 +15,7 @@
     "rel_path": null
   },
   "summary": {
-    "coords": "skipped (already_generated)",
+    "coords": "completed (already_generated)",
     "segmentation": "skipped (already_segmented)"
   },
   "tasks": {
@@ -61,23 +61,73 @@
           "result": "completed",
           "started_at": "2026-08-26T06:26:51+0200",
           "started_epoch": 1787718411.8352325
+        },
+        {
+          "attempt_id": "a24b6b961436",
+          "duration_s": 0.8743236064910889,
+          "error": null,
+          "finished_at": "2026-08-28T15:09:57+0200",
+          "finished_epoch": 1787922597.519303,
+          "result": "completed",
+          "started_at": "2026-08-28T15:09:56+0200",
+          "started_epoch": 1787922596.6449795
+        },
+        {
+          "attempt_id": "868cf6128afe",
+          "duration_s": 0.6672306060791016,
+          "error": null,
+          "finished_at": "2026-08-28T15:17:31+0200",
+          "finished_epoch": 1787923051.8021562,
+          "result": "completed",
+          "started_at": "2026-08-28T15:17:31+0200",
+          "started_epoch": 1787923051.1349256
+        },
+        {
+          "attempt_id": "b4a57dfe5be8",
+          "duration_s": 0.6707124710083008,
+          "error": null,
+          "finished_at": "2026-08-28T15:24:50+0200",
+          "finished_epoch": 1787923490.09496,
+          "result": "completed",
+          "started_at": "2026-08-28T15:24:49+0200",
+          "started_epoch": 1787923489.4242475
+        },
+        {
+          "attempt_id": "9682827f5157",
+          "duration_s": 0.6986112594604492,
+          "error": null,
+          "finished_at": "2026-08-28T15:32:48+0200",
+          "finished_epoch": 1787923968.1966124,
+          "result": "completed",
+          "started_at": "2026-08-28T15:32:47+0200",
+          "started_epoch": 1787923967.498001
+        },
+        {
+          "attempt_id": "2ab7f36434ee",
+          "duration_s": 0.670701265335083,
+          "error": null,
+          "finished_at": "2026-08-28T15:40:15+0200",
+          "finished_epoch": 1787924415.4983363,
+          "result": "completed",
+          "started_at": "2026-08-28T15:40:14+0200",
+          "started_epoch": 1787924414.827635
         }
       ],
-      "message": "Patch coords already generated; skipping.",
+      "message": "Patch coords generated.",
       "outputs": {
         "coords_h5": {
-          "bytes": 794232,
+          "bytes": 25080,
           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_224px_0px_overlap/patches/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11_patches.h5"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11_patches.h5"
         },
         "coords_viz": {
-          "bytes": 102922,
+          "bytes": 103455,
           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_384px_0px_overlap/visualization/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.jpg"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/visualization/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.jpg"
         }
       },
       "reason": "already_generated",
-      "status": "skipped"
+      "status": "completed"
     },
     "segmentation": {
       "_active_attempt_id": null,
@@ -111,5 +161,5 @@
     }
   },
   "trident_version": "0.3.0",
-  "updated_at": "2026-08-26T07:42:07+0200"
+  "updated_at": "2026-08-28T15:40:15+0200"
 }

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11__4465f427c3e6.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-08-28T22:10:23+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579312/wsi-cache-15579312/gpu_0/batch_52/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.svs__4465f427c3e6",
+    "name": "TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "keep": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 56816,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:keep": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "1bc9a31ecee2",
+          "duration_s": 107.53994750976562,
+          "error": null,
+          "finished_at": "2026-08-28T22:10:23+0200",
+          "finished_epoch": 1787947823.281028,
+          "result": "completed",
+          "started_at": "2026-08-28T22:08:35+0200",
+          "started_epoch": 1787947715.7410805
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 56816,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11_patches.h5"
+        },
+        "features_path": {
+          "bytes": 2264984,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_keep/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 200119,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:10:23+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11__65dae0f2f116.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-08-28T23:23:46+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579313/wsi-cache-15579313/gpu_0/batch_52/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.svs__65dae0f2f116",
+    "name": "TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "keep": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 25080,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:keep": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "64f07d9e4e0f",
+          "duration_s": 56.9816107749939,
+          "error": null,
+          "finished_at": "2026-08-28T23:23:46+0200",
+          "finished_epoch": 1787952226.5584097,
+          "result": "completed",
+          "started_at": "2026-08-28T23:22:49+0200",
+          "started_epoch": 1787952169.576799
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 25080,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11_patches.h5"
+        },
+        "features_path": {
+          "bytes": 673704,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_keep/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 200119,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:23:46+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11__8d6d6c64d4eb.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "running",
+    "last_task": "patch_features:conch_v1",
+    "last_updated_at": "2026-08-28T23:15:46+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579308/wsi-cache-15579308/gpu_0/batch_52/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.svs__8d6d6c64d4eb",
+    "name": "TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v1": "running"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/patches/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v1": {
+      "_active_attempt_id": "1e2457c1974f",
+      "attempts": [
+        {
+          "attempt_id": "1e2457c1974f",
+          "duration_s": null,
+          "error": null,
+          "finished_at": null,
+          "finished_epoch": null,
+          "result": "running",
+          "started_at": "2026-08-28T23:15:46+0200",
+          "started_epoch": 1787951746.0450642
+        }
+      ],
+      "message": "Extracting patch features...",
+      "outputs": {
+        "coords_path": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/patches/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11_patches.h5"
+        },
+        "features_path": {
+          "bytes": null,
+          "exists": false,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/features_conch_v1/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.h5"
+        }
+      },
+      "reason": null,
+      "status": "running"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 200119,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:15:46+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11__c8e5b162dab8.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:conch_v1",
+    "last_updated_at": "2026-08-28T22:06:57+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579307/wsi-cache-15579307/gpu_0/batch_52/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.svs__c8e5b162dab8",
+    "name": "TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v1": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 25080,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/patches/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v1": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "5a4a29828372",
+          "duration_s": 30.83395266532898,
+          "error": null,
+          "finished_at": "2026-08-28T22:06:57+0200",
+          "finished_epoch": 1787947617.699601,
+          "result": "completed",
+          "started_at": "2026-08-28T22:06:26+0200",
+          "started_epoch": 1787947586.8656483
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 25080,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/patches/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11_patches.h5"
+        },
+        "features_path": {
+          "bytes": 461736,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/features_conch_v1/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 200119,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:06:57+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11__e7b290759acc.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
+    "dimensions": [
+      127579,
+      68403
+    ],
+    "level_count": 4,
+    "mag": 40,
+    "mpp": 0.252
+  },
+  "resume": {
+    "last_status": "completed",
+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-28T21:40:20+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579310/wsi-cache-15579310/gpu_0/batch_52/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.svs__e7b290759acc",
+    "name": "TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 25080,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "b7f9a922963c",
+          "duration_s": 57.704214096069336,
+          "error": null,
+          "finished_at": "2026-08-28T21:37:27+0200",
+          "finished_epoch": 1787945847.0430357,
+          "result": "completed",
+          "started_at": "2026-08-28T21:36:29+0200",
+          "started_epoch": 1787945789.3388216
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 25080,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11_patches.h5"
+        },
+        "features_path": {
+          "bytes": 673704,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_conch_v15/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 200119,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "1e61384e0efc",
+          "duration_s": 0.035997867584228516,
+          "error": null,
+          "finished_at": "2026-08-28T21:40:20+0200",
+          "finished_epoch": 1787946020.7604465,
+          "result": "completed",
+          "started_at": "2026-08-28T21:40:20+0200",
+          "started_epoch": 1787946020.7244487
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 673704,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_conch_v15/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.h5"
+        },
+        "slide_features_path": {
+          "bytes": 58448,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/slide_features_titan/TCGA-41-2573-01Z-00-DX1.aaa4085e-c7e0-4c03-8033-780f407b0d11.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T21:40:20+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e__77f2e61af903.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "running",
+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-08-28T23:23:46+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579313/wsi-cache-15579313/gpu_0/batch_52/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.svs__77f2e61af903",
+    "name": "TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "keep": "running"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 25080,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:keep": {
+      "_active_attempt_id": "5d72c6a27263",
+      "attempts": [
+        {
+          "attempt_id": "5d72c6a27263",
+          "duration_s": null,
+          "error": null,
+          "finished_at": null,
+          "finished_epoch": null,
+          "result": "running",
+          "started_at": "2026-08-28T23:23:46+0200",
+          "started_epoch": 1787952226.5745127
+        }
+      ],
+      "message": "Extracting patch features...",
+      "outputs": {
+        "coords_path": {
+          "bytes": 25080,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e_patches.h5"
+        },
+        "features_path": {
+          "bytes": null,
+          "exists": false,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_keep/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.h5"
+        }
+      },
+      "reason": null,
+      "status": "running"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 246307,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:23:46+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e__91daa5660ecf.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:conch_v1",
+    "last_updated_at": "2026-08-28T22:07:28+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579307/wsi-cache-15579307/gpu_0/batch_52/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.svs__91daa5660ecf",
+    "name": "TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v1": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 25080,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/patches/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v1": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "eaf8417a5bdb",
+          "duration_s": 31.243530988693237,
+          "error": null,
+          "finished_at": "2026-08-28T22:07:28+0200",
+          "finished_epoch": 1787947648.962139,
+          "result": "completed",
+          "started_at": "2026-08-28T22:06:57+0200",
+          "started_epoch": 1787947617.718608
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 25080,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/patches/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e_patches.h5"
+        },
+        "features_path": {
+          "bytes": 404392,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/features_conch_v1/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 246307,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:07:28+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e__9d0233459ea7.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-08-28T22:11:54+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579312/wsi-cache-15579312/gpu_0/batch_52/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.svs__9d0233459ea7",
+    "name": "TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "keep": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 46920,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:keep": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "a38ee66addae",
+          "duration_s": 91.18035793304443,
+          "error": null,
+          "finished_at": "2026-08-28T22:11:54+0200",
+          "finished_epoch": 1787947914.48125,
+          "result": "completed",
+          "started_at": "2026-08-28T22:10:23+0200",
+          "started_epoch": 1787947823.300892
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 46920,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e_patches.h5"
+        },
+        "features_path": {
+          "bytes": 1804872,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_keep/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 246307,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:11:54+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e__9e979322e9b8.json

@@ -0,0 +1,53 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "skipped",
+    "last_task": "coords",
+    "last_updated_at": "2026-08-28T23:08:39+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579308/wsi-cache-15579308/gpu_0/batch_52/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.svs__9e979322e9b8",
+    "name": "TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 11480,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/patches/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 246307,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:08:39+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e__c16336ea819b.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
+    "dimensions": [
+      97843,
+      68917
+    ],
+    "level_count": 4,
+    "mag": 40,
+    "mpp": 0.252
+  },
+  "resume": {
+    "last_status": "completed",
+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-28T22:56:31+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579309/wsi-cache-15579309/gpu_0/batch_52/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.svs__c16336ea819b",
+    "name": "TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 46920,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "f567af2be516",
+          "duration_s": 93.39517998695374,
+          "error": null,
+          "finished_at": "2026-08-28T22:52:47+0200",
+          "finished_epoch": 1787950367.3889813,
+          "result": "completed",
+          "started_at": "2026-08-28T22:51:13+0200",
+          "started_epoch": 1787950273.9938014
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 46920,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e_patches.h5"
+        },
+        "features_path": {
+          "bytes": 1804872,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 246307,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "c518fbbbe4c2",
+          "duration_s": 0.11876821517944336,
+          "error": null,
+          "finished_at": "2026-08-28T22:56:31+0200",
+          "finished_epoch": 1787950591.125738,
+          "result": "completed",
+          "started_at": "2026-08-28T22:56:31+0200",
+          "started_epoch": 1787950591.0069697
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 1804872,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.h5"
+        },
+        "slide_features_path": {
+          "bytes": 80048,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/slide_features_titan/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:56:31+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e__c99e2bc87037.json

@@ -1,9 +1,9 @@
 {
   "meta": {},
   "resume": {
-    "last_status": "skipped",
+    "last_status": "completed",
     "last_task": "coords",
-    "last_updated_at": "2026-08-26T07:42:07+0200"
+    "last_updated_at": "2026-08-28T15:40:16+0200"
   },
   "schema_version": 2,
   "slide": {
@@ -15,7 +15,7 @@
     "rel_path": null
   },
   "summary": {
-    "coords": "skipped (already_generated)",
+    "coords": "completed (already_generated)",
     "segmentation": "skipped (already_segmented)"
   },
   "tasks": {
@@ -61,23 +61,73 @@
           "result": "completed",
           "started_at": "2026-08-26T06:26:52+0200",
           "started_epoch": 1787718412.8367612
+        },
+        {
+          "attempt_id": "a5d5e7397f03",
+          "duration_s": 0.9039590358734131,
+          "error": null,
+          "finished_at": "2026-08-28T15:09:58+0200",
+          "finished_epoch": 1787922598.4950001,
+          "result": "completed",
+          "started_at": "2026-08-28T15:09:57+0200",
+          "started_epoch": 1787922597.591041
+        },
+        {
+          "attempt_id": "8eaa8cf00186",
+          "duration_s": 0.5574424266815186,
+          "error": null,
+          "finished_at": "2026-08-28T15:17:32+0200",
+          "finished_epoch": 1787923052.4068959,
+          "result": "completed",
+          "started_at": "2026-08-28T15:17:31+0200",
+          "started_epoch": 1787923051.8494534
+        },
+        {
+          "attempt_id": "9792d09cb1dd",
+          "duration_s": 0.542222261428833,
+          "error": null,
+          "finished_at": "2026-08-28T15:24:50+0200",
+          "finished_epoch": 1787923490.6804774,
+          "result": "completed",
+          "started_at": "2026-08-28T15:24:50+0200",
+          "started_epoch": 1787923490.1382551
+        },
+        {
+          "attempt_id": "ed6ed6e466d8",
+          "duration_s": 0.6140375137329102,
+          "error": null,
+          "finished_at": "2026-08-28T15:32:48+0200",
+          "finished_epoch": 1787923968.861055,
+          "result": "completed",
+          "started_at": "2026-08-28T15:32:48+0200",
+          "started_epoch": 1787923968.2470174
+        },
+        {
+          "attempt_id": "e0493ca81bab",
+          "duration_s": 0.5626621246337891,
+          "error": null,
+          "finished_at": "2026-08-28T15:40:16+0200",
+          "finished_epoch": 1787924416.1123717,
+          "result": "completed",
+          "started_at": "2026-08-28T15:40:15+0200",
+          "started_epoch": 1787924415.5497096
         }
       ],
-      "message": "Patch coords already generated; skipping.",
+      "message": "Patch coords generated.",
       "outputs": {
         "coords_h5": {
-          "bytes": 564800,
+          "bytes": 25080,
           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_224px_0px_overlap/patches/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e_patches.h5"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e_patches.h5"
         },
         "coords_viz": {
-          "bytes": 133823,
+          "bytes": 129352,
           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_384px_0px_overlap/visualization/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.jpg"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/visualization/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.jpg"
         }
       },
       "reason": "already_generated",
-      "status": "skipped"
+      "status": "completed"
     },
     "segmentation": {
       "_active_attempt_id": null,
@@ -111,5 +161,5 @@
     }
   },
   "trident_version": "0.3.0",
-  "updated_at": "2026-08-26T07:42:07+0200"
+  "updated_at": "2026-08-28T15:40:16+0200"
 }

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e__e547f8ffce01.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
+    "dimensions": [
+      97843,
+      68917
+    ],
+    "level_count": 4,
+    "mag": 40,
+    "mpp": 0.252
+  },
+  "resume": {
+    "last_status": "completed",
+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-28T21:40:20+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579310/wsi-cache-15579310/gpu_0/batch_52/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.svs__e547f8ffce01",
+    "name": "TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 25080,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "5a7d83103b6e",
+          "duration_s": 55.03545641899109,
+          "error": null,
+          "finished_at": "2026-08-28T21:38:22+0200",
+          "finished_epoch": 1787945902.0940914,
+          "result": "completed",
+          "started_at": "2026-08-28T21:37:27+0200",
+          "started_epoch": 1787945847.058635
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 25080,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e_patches.h5"
+        },
+        "features_path": {
+          "bytes": 587688,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_conch_v15/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 246307,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "d4b5259173ed",
+          "duration_s": 0.040148258209228516,
+          "error": null,
+          "finished_at": "2026-08-28T21:40:20+0200",
+          "finished_epoch": 1787946020.814257,
+          "result": "completed",
+          "started_at": "2026-08-28T21:40:20+0200",
+          "started_epoch": 1787946020.7741086
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 587688,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_conch_v15/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.h5"
+        },
+        "slide_features_path": {
+          "bytes": 58208,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/slide_features_titan/TCGA-41-2575-01Z-00-DX1.cdce8f65-3ac2-4e03-a655-9176ea272f7e.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T21:40:20+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b__2728d3889d58.json

@@ -0,0 +1,53 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "skipped",
+    "last_task": "coords",
+    "last_updated_at": "2026-08-28T23:20:38+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579313/wsi-cache-15579313/gpu_0/batch_52/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.svs__2728d3889d58",
+    "name": "TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 434338,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:20:38+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b__45a39da695d2.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:conch_v1",
+    "last_updated_at": "2026-08-28T22:07:57+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579307/wsi-cache-15579307/gpu_0/batch_52/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.svs__45a39da695d2",
+    "name": "TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v1": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/patches/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v1": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "771ac1ef336c",
+          "duration_s": 28.16663646697998,
+          "error": null,
+          "finished_at": "2026-08-28T22:07:57+0200",
+          "finished_epoch": 1787947677.1475027,
+          "result": "completed",
+          "started_at": "2026-08-28T22:07:28+0200",
+          "started_epoch": 1787947648.9808662
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/patches/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b_patches.h5"
+        },
+        "features_path": {
+          "bytes": 236232,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/features_conch_v1/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 434338,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:07:57+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b__4f3bbf667e63.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
+    "dimensions": [
+      47003,
+      51259
+    ],
+    "level_count": 4,
+    "mag": 40,
+    "mpp": 0.252
+  },
+  "resume": {
+    "last_status": "completed",
+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-28T21:40:20+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579310/wsi-cache-15579310/gpu_0/batch_52/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.svs__4f3bbf667e63",
+    "name": "TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "399cce2d91f7",
+          "duration_s": 31.545335292816162,
+          "error": null,
+          "finished_at": "2026-08-28T21:38:53+0200",
+          "finished_epoch": 1787945933.6571722,
+          "result": "completed",
+          "started_at": "2026-08-28T21:38:22+0200",
+          "started_epoch": 1787945902.111837
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b_patches.h5"
+        },
+        "features_path": {
+          "bytes": 338632,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_conch_v15/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 434338,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "1a13b19a5eda",
+          "duration_s": 0.03487253189086914,
+          "error": null,
+          "finished_at": "2026-08-28T21:40:20+0200",
+          "finished_epoch": 1787946020.865937,
+          "result": "completed",
+          "started_at": "2026-08-28T21:40:20+0200",
+          "started_epoch": 1787946020.8310645
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 338632,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_conch_v15/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.h5"
+        },
+        "slide_features_path": {
+          "bytes": 52976,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/slide_features_titan/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T21:40:20+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b__5168fabe45f9.json

@@ -0,0 +1,53 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "skipped",
+    "last_task": "coords",
+    "last_updated_at": "2026-08-28T23:08:39+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579308/wsi-cache-15579308/gpu_0/batch_52/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.svs__5168fabe45f9",
+    "name": "TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 11016,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/patches/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 434338,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:08:39+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b__62887015f091.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
+    "dimensions": [
+      47003,
+      51259
+    ],
+    "level_count": 4,
+    "mag": 40,
+    "mpp": 0.252
+  },
+  "resume": {
+    "last_status": "completed",
+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-28T22:56:31+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579309/wsi-cache-15579309/gpu_0/batch_52/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.svs__62887015f091",
+    "name": "TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 34976,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "c1a041f8fe7f",
+          "duration_s": 74.4266722202301,
+          "error": null,
+          "finished_at": "2026-08-28T22:54:01+0200",
+          "finished_epoch": 1787950441.840498,
+          "result": "completed",
+          "started_at": "2026-08-28T22:52:47+0200",
+          "started_epoch": 1787950367.4138258
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 34976,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b_patches.h5"
+        },
+        "features_path": {
+          "bytes": 1161464,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 434338,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "90251958a9d0",
+          "duration_s": 0.09552264213562012,
+          "error": null,
+          "finished_at": "2026-08-28T22:56:31+0200",
+          "finished_epoch": 1787950591.2389357,
+          "result": "completed",
+          "started_at": "2026-08-28T22:56:31+0200",
+          "started_epoch": 1787950591.143413
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 1161464,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.h5"
+        },
+        "slide_features_path": {
+          "bytes": 70152,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/slide_features_titan/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:56:31+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b__a75d0b504ce8.json

@@ -1,9 +1,9 @@
 {
   "meta": {},
   "resume": {
-    "last_status": "skipped",
+    "last_status": "completed",
     "last_task": "coords",
-    "last_updated_at": "2026-08-26T07:42:07+0200"
+    "last_updated_at": "2026-08-28T15:40:16+0200"
   },
   "schema_version": 2,
   "slide": {
@@ -15,7 +15,7 @@
     "rel_path": null
   },
   "summary": {
-    "coords": "skipped (already_generated)",
+    "coords": "completed (already_generated)",
     "segmentation": "skipped (already_segmented)"
   },
   "tasks": {
@@ -61,23 +61,73 @@
           "result": "completed",
           "started_at": "2026-08-26T06:26:53+0200",
           "started_epoch": 1787718413.6685636
+        },
+        {
+          "attempt_id": "902de43c7005",
+          "duration_s": 0.35708045959472656,
+          "error": null,
+          "finished_at": "2026-08-28T15:09:58+0200",
+          "finished_epoch": 1787922598.8988457,
+          "result": "completed",
+          "started_at": "2026-08-28T15:09:58+0200",
+          "started_epoch": 1787922598.5417652
+        },
+        {
+          "attempt_id": "0ce27c212570",
+          "duration_s": 0.2653627395629883,
+          "error": null,
+          "finished_at": "2026-08-28T15:17:32+0200",
+          "finished_epoch": 1787923052.7039633,
+          "result": "completed",
+          "started_at": "2026-08-28T15:17:32+0200",
+          "started_epoch": 1787923052.4386005
+        },
+        {
+          "attempt_id": "1ccba2b328f2",
+          "duration_s": 0.2581489086151123,
+          "error": null,
+          "finished_at": "2026-08-28T15:24:50+0200",
+          "finished_epoch": 1787923490.9664435,
+          "result": "completed",
+          "started_at": "2026-08-28T15:24:50+0200",
+          "started_epoch": 1787923490.7082946
+        },
+        {
+          "attempt_id": "2c44b9af62a2",
+          "duration_s": 0.2876760959625244,
+          "error": null,
+          "finished_at": "2026-08-28T15:32:49+0200",
+          "finished_epoch": 1787923969.2130427,
+          "result": "completed",
+          "started_at": "2026-08-28T15:32:48+0200",
+          "started_epoch": 1787923968.9253666
+        },
+        {
+          "attempt_id": "942b53c223db",
+          "duration_s": 0.26851987838745117,
+          "error": null,
+          "finished_at": "2026-08-28T15:40:16+0200",
+          "finished_epoch": 1787924416.415197,
+          "result": "completed",
+          "started_at": "2026-08-28T15:40:16+0200",
+          "started_epoch": 1787924416.146677
         }
       ],
-      "message": "Patch coords already generated; skipping.",
+      "message": "Patch coords generated.",
       "outputs": {
         "coords_h5": {
-          "bytes": 421376,
+          "bytes": 17800,
           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_224px_0px_overlap/patches/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b_patches.h5"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b_patches.h5"
         },
         "coords_viz": {
-          "bytes": 236661,
+          "bytes": 214983,
           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_384px_0px_overlap/visualization/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.jpg"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/visualization/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.jpg"
         }
       },
       "reason": "already_generated",
-      "status": "skipped"
+      "status": "completed"
     },
     "segmentation": {
       "_active_attempt_id": null,
@@ -111,5 +161,5 @@
     }
   },
   "trident_version": "0.3.0",
-  "updated_at": "2026-08-26T07:42:07+0200"
+  "updated_at": "2026-08-28T15:40:16+0200"
 }

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b__bbb1bc36f7ae.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-08-28T22:13:06+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579312/wsi-cache-15579312/gpu_0/batch_52/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.svs__bbb1bc36f7ae",
+    "name": "TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "keep": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 34976,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:keep": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "4b8d131cc2d3",
+          "duration_s": 72.40196371078491,
+          "error": null,
+          "finished_at": "2026-08-28T22:13:06+0200",
+          "finished_epoch": 1787947986.9027889,
+          "result": "completed",
+          "started_at": "2026-08-28T22:11:54+0200",
+          "started_epoch": 1787947914.5008252
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 34976,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b_patches.h5"
+        },
+        "features_path": {
+          "bytes": 1161464,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_keep/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 434338,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-3392-01Z-00-DX1.2d3dba82-f1cb-4589-bad1-f27ca388049b.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:13:06+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47__35baa0ecac87.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:conch_v1",
+    "last_updated_at": "2026-08-28T22:08:21+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579307/wsi-cache-15579307/gpu_0/batch_52/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.svs__35baa0ecac87",
+    "name": "TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v1": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/patches/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v1": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "66b14870d7c5",
+          "duration_s": 24.82309651374817,
+          "error": null,
+          "finished_at": "2026-08-28T22:08:21+0200",
+          "finished_epoch": 1787947701.9902346,
+          "result": "completed",
+          "started_at": "2026-08-28T22:07:57+0200",
+          "started_epoch": 1787947677.167138
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/patches/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47_patches.h5"
+        },
+        "features_path": {
+          "bytes": 215752,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/features_conch_v1/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 173078,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:08:21+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47__4af67b79a918.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-08-28T22:13:44+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579312/wsi-cache-15579312/gpu_0/batch_52/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.svs__4af67b79a918",
+    "name": "TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "keep": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 27840,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:keep": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "bcf3a829f02b",
+          "duration_s": 37.89025926589966,
+          "error": null,
+          "finished_at": "2026-08-28T22:13:44+0200",
+          "finished_epoch": 1787948024.8149807,
+          "result": "completed",
+          "started_at": "2026-08-28T22:13:06+0200",
+          "started_epoch": 1787947986.9247215
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 27840,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47_patches.h5"
+        },
+        "features_path": {
+          "bytes": 857256,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_keep/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 173078,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:13:44+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47__8248a753db8e.json

@@ -0,0 +1,53 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "skipped",
+    "last_task": "coords",
+    "last_updated_at": "2026-08-28T23:08:39+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579308/wsi-cache-15579308/gpu_0/batch_52/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.svs__8248a753db8e",
+    "name": "TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 11064,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/patches/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 173078,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:08:39+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47__a64b73f4d5ec.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
+    "dimensions": [
+      40288,
+      78841
+    ],
+    "level_count": 4,
+    "mag": 40,
+    "mpp": 0.252
+  },
+  "resume": {
+    "last_status": "completed",
+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-28T22:56:31+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579309/wsi-cache-15579309/gpu_0/batch_52/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.svs__a64b73f4d5ec",
+    "name": "TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 27840,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "e5badbf98df4",
+          "duration_s": 38.865583419799805,
+          "error": null,
+          "finished_at": "2026-08-28T22:54:40+0200",
+          "finished_epoch": 1787950480.729244,
+          "result": "completed",
+          "started_at": "2026-08-28T22:54:01+0200",
+          "started_epoch": 1787950441.8636606
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 27840,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47_patches.h5"
+        },
+        "features_path": {
+          "bytes": 857256,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 173078,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "a45ca25e1f48",
+          "duration_s": 0.07147669792175293,
+          "error": null,
+          "finished_at": "2026-08-28T22:56:31+0200",
+          "finished_epoch": 1787950591.3290977,
+          "result": "completed",
+          "started_at": "2026-08-28T22:56:31+0200",
+          "started_epoch": 1787950591.257621
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 857256,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.h5"
+        },
+        "slide_features_path": {
+          "bytes": 62872,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/slide_features_titan/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:56:31+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47__b2aad8dfa73f.json

@@ -0,0 +1,53 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "skipped",
+    "last_task": "coords",
+    "last_updated_at": "2026-08-28T23:20:38+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579313/wsi-cache-15579313/gpu_0/batch_52/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.svs__b2aad8dfa73f",
+    "name": "TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 173078,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:20:38+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47__c594b8bff688.json

@@ -1,9 +1,9 @@
 {
   "meta": {},
   "resume": {
-    "last_status": "skipped",
+    "last_status": "completed",
     "last_task": "coords",
-    "last_updated_at": "2026-08-26T07:42:07+0200"
+    "last_updated_at": "2026-08-28T15:40:16+0200"
   },
   "schema_version": 2,
   "slide": {
@@ -15,7 +15,7 @@
     "rel_path": null
   },
   "summary": {
-    "coords": "skipped (already_generated)",
+    "coords": "completed (already_generated)",
     "segmentation": "skipped (already_segmented)"
   },
   "tasks": {
@@ -61,23 +61,73 @@
           "result": "completed",
           "started_at": "2026-08-26T06:26:54+0200",
           "started_epoch": 1787718414.1514006
+        },
+        {
+          "attempt_id": "e4b4dda2c1b9",
+          "duration_s": 0.36687302589416504,
+          "error": null,
+          "finished_at": "2026-08-28T15:09:59+0200",
+          "finished_epoch": 1787922599.316663,
+          "result": "completed",
+          "started_at": "2026-08-28T15:09:58+0200",
+          "started_epoch": 1787922598.94979
+        },
+        {
+          "attempt_id": "7f735e62072b",
+          "duration_s": 0.30052685737609863,
+          "error": null,
+          "finished_at": "2026-08-28T15:17:33+0200",
+          "finished_epoch": 1787923053.043151,
+          "result": "completed",
+          "started_at": "2026-08-28T15:17:32+0200",
+          "started_epoch": 1787923052.742624
+        },
+        {
+          "attempt_id": "3437287a81f1",
+          "duration_s": 0.26282620429992676,
+          "error": null,
+          "finished_at": "2026-08-28T15:24:51+0200",
+          "finished_epoch": 1787923491.259291,
+          "result": "completed",
+          "started_at": "2026-08-28T15:24:50+0200",
+          "started_epoch": 1787923490.9964647
+        },
+        {
+          "attempt_id": "b24b42b66a5d",
+          "duration_s": 0.28627610206604004,
+          "error": null,
+          "finished_at": "2026-08-28T15:32:49+0200",
+          "finished_epoch": 1787923969.5563996,
+          "result": "completed",
+          "started_at": "2026-08-28T15:32:49+0200",
+          "started_epoch": 1787923969.2701235
+        },
+        {
+          "attempt_id": "fe81337b1250",
+          "duration_s": 0.2718667984008789,
+          "error": null,
+          "finished_at": "2026-08-28T15:40:16+0200",
+          "finished_epoch": 1787924416.7216156,
+          "result": "completed",
+          "started_at": "2026-08-28T15:40:16+0200",
+          "started_epoch": 1787924416.4497488
         }
       ],
-      "message": "Patch coords already generated; skipping.",
+      "message": "Patch coords generated.",
       "outputs": {
         "coords_h5": {
-          "bytes": 262808,
+          "bytes": 17800,
           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_224px_0px_overlap/patches/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47_patches.h5"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47_patches.h5"
         },
         "coords_viz": {
-          "bytes": 93321,
+          "bytes": 92318,
           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_384px_0px_overlap/visualization/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.jpg"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/visualization/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.jpg"
         }
       },
       "reason": "already_generated",
-      "status": "skipped"
+      "status": "completed"
     },
     "segmentation": {
       "_active_attempt_id": null,
@@ -111,5 +161,5 @@
     }
   },
   "trident_version": "0.3.0",
-  "updated_at": "2026-08-26T07:42:07+0200"
+  "updated_at": "2026-08-28T15:40:16+0200"
 }

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47__da20db957278.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
+    "dimensions": [
+      40288,
+      78841
+    ],
+    "level_count": 4,
+    "mag": 40,
+    "mpp": 0.252
+  },
+  "resume": {
+    "last_status": "completed",
+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-28T21:40:20+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579310/wsi-cache-15579310/gpu_0/batch_52/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.svs__da20db957278",
+    "name": "TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "c12b1905f4f7",
+          "duration_s": 27.74228024482727,
+          "error": null,
+          "finished_at": "2026-08-28T21:39:21+0200",
+          "finished_epoch": 1787945961.41679,
+          "result": "completed",
+          "started_at": "2026-08-28T21:38:53+0200",
+          "started_epoch": 1787945933.6745098
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47_patches.h5"
+        },
+        "features_path": {
+          "bytes": 304840,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_conch_v15/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 173078,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "bebf14a15689",
+          "duration_s": 0.033179283142089844,
+          "error": null,
+          "finished_at": "2026-08-28T21:40:20+0200",
+          "finished_epoch": 1787946020.912224,
+          "result": "completed",
+          "started_at": "2026-08-28T21:40:20+0200",
+          "started_epoch": 1787946020.8790448
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 304840,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_conch_v15/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.h5"
+        },
+        "slide_features_path": {
+          "bytes": 52976,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/slide_features_titan/TCGA-41-3393-01Z-00-DX1.f3a44b0d-dad5-4e0a-ac85-fe2ac191ee47.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T21:40:20+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33__05fcba30c4c0.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
+    "dimensions": [
+      117987,
+      56660
+    ],
+    "level_count": 4,
+    "mag": 40,
+    "mpp": 0.252
+  },
+  "resume": {
+    "last_status": "completed",
+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-28T21:40:20+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579310/wsi-cache-15579310/gpu_0/batch_52/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.svs__05fcba30c4c0",
+    "name": "TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 21152,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "769e298323b7",
+          "duration_s": 58.647884368896484,
+          "error": null,
+          "finished_at": "2026-08-28T21:40:20+0200",
+          "finished_epoch": 1787946020.0830672,
+          "result": "completed",
+          "started_at": "2026-08-28T21:39:21+0200",
+          "started_epoch": 1787945961.4351828
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 21152,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33_patches.h5"
+        },
+        "features_path": {
+          "bytes": 565784,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_conch_v15/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 180889,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "5d636acf4f17",
+          "duration_s": 0.03590869903564453,
+          "error": null,
+          "finished_at": "2026-08-28T21:40:20+0200",
+          "finished_epoch": 1787946020.973754,
+          "result": "completed",
+          "started_at": "2026-08-28T21:40:20+0200",
+          "started_epoch": 1787946020.9378452
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 565784,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_conch_v15/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.h5"
+        },
+        "slide_features_path": {
+          "bytes": 55592,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/slide_features_titan/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T21:40:20+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33__1ad006136b2a.json

@@ -0,0 +1,53 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "skipped",
+    "last_task": "coords",
+    "last_updated_at": "2026-08-28T23:20:38+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579313/wsi-cache-15579313/gpu_0/batch_52/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.svs__1ad006136b2a",
+    "name": "TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 21152,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 180889,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:20:38+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33__59431abb066b.json

@@ -1,9 +1,9 @@
 {
   "meta": {},
   "resume": {
-    "last_status": "skipped",
+    "last_status": "completed",
     "last_task": "coords",
-    "last_updated_at": "2026-08-26T07:42:07+0200"
+    "last_updated_at": "2026-08-28T15:40:17+0200"
   },
   "schema_version": 2,
   "slide": {
@@ -15,7 +15,7 @@
     "rel_path": null
   },
   "summary": {
-    "coords": "skipped (already_generated)",
+    "coords": "completed (already_generated)",
     "segmentation": "skipped (already_segmented)"
   },
   "tasks": {
@@ -61,23 +61,73 @@
           "result": "completed",
           "started_at": "2026-08-26T06:26:54+0200",
           "started_epoch": 1787718414.5975652
+        },
+        {
+          "attempt_id": "8bd652ac78fa",
+          "duration_s": 0.6353495121002197,
+          "error": null,
+          "finished_at": "2026-08-28T15:09:59+0200",
+          "finished_epoch": 1787922599.9980843,
+          "result": "completed",
+          "started_at": "2026-08-28T15:09:59+0200",
+          "started_epoch": 1787922599.3627348
+        },
+        {
+          "attempt_id": "dd002dfb8acb",
+          "duration_s": 0.49423885345458984,
+          "error": null,
+          "finished_at": "2026-08-28T15:17:33+0200",
+          "finished_epoch": 1787923053.575204,
+          "result": "completed",
+          "started_at": "2026-08-28T15:17:33+0200",
+          "started_epoch": 1787923053.080965
+        },
+        {
+          "attempt_id": "49d93a9842f0",
+          "duration_s": 0.4744069576263428,
+          "error": null,
+          "finished_at": "2026-08-28T15:24:51+0200",
+          "finished_epoch": 1787923491.7619805,
+          "result": "completed",
+          "started_at": "2026-08-28T15:24:51+0200",
+          "started_epoch": 1787923491.2875736
+        },
+        {
+          "attempt_id": "b17c6e2dc266",
+          "duration_s": 0.5379204750061035,
+          "error": null,
+          "finished_at": "2026-08-28T15:32:50+0200",
+          "finished_epoch": 1787923970.1309988,
+          "result": "completed",
+          "started_at": "2026-08-28T15:32:49+0200",
+          "started_epoch": 1787923969.5930784
+        },
+        {
+          "attempt_id": "9079576ff669",
+          "duration_s": 0.5878629684448242,
+          "error": null,
+          "finished_at": "2026-08-28T15:40:17+0200",
+          "finished_epoch": 1787924417.357225,
+          "result": "completed",
+          "started_at": "2026-08-28T15:40:16+0200",
+          "started_epoch": 1787924416.769362
         }
       ],
-      "message": "Patch coords already generated; skipping.",
+      "message": "Patch coords generated.",
       "outputs": {
         "coords_h5": {
-          "bytes": 706304,
+          "bytes": 21152,
           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_224px_0px_overlap/patches/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33_patches.h5"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33_patches.h5"
         },
         "coords_viz": {
-          "bytes": 92477,
+          "bytes": 83019,
           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_384px_0px_overlap/visualization/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.jpg"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/visualization/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.jpg"
         }
       },
       "reason": "already_generated",
-      "status": "skipped"
+      "status": "completed"
     },
     "segmentation": {
       "_active_attempt_id": null,
@@ -111,5 +161,5 @@
     }
   },
   "trident_version": "0.3.0",
-  "updated_at": "2026-08-26T07:42:07+0200"
+  "updated_at": "2026-08-28T15:40:17+0200"
 }

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33__5c56169a6b7b.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
+    "dimensions": [
+      117987,
+      56660
+    ],
+    "level_count": 4,
+    "mag": 40,
+    "mpp": 0.252
+  },
+  "resume": {
+    "last_status": "completed",
+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-28T22:56:31+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579309/wsi-cache-15579309/gpu_0/batch_52/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.svs__5c56169a6b7b",
+    "name": "TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 49536,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "438569a721b9",
+          "duration_s": 108.54539585113525,
+          "error": null,
+          "finished_at": "2026-08-28T22:56:29+0200",
+          "finished_epoch": 1787950589.3062785,
+          "result": "completed",
+          "started_at": "2026-08-28T22:54:40+0200",
+          "started_epoch": 1787950480.7608826
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 49536,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33_patches.h5"
+        },
+        "features_path": {
+          "bytes": 1951416,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 180889,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "a23558ec54a7",
+          "duration_s": 0.12293863296508789,
+          "error": null,
+          "finished_at": "2026-08-28T22:56:31+0200",
+          "finished_epoch": 1787950591.474768,
+          "result": "completed",
+          "started_at": "2026-08-28T22:56:31+0200",
+          "started_epoch": 1787950591.3518293
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 1951416,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.h5"
+        },
+        "slide_features_path": {
+          "bytes": 84712,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/slide_features_titan/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:56:31+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33__872a800470ed.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-08-28T22:15:30+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579312/wsi-cache-15579312/gpu_0/batch_52/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.svs__872a800470ed",
+    "name": "TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "keep": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 49536,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:keep": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "99e032ca3403",
+          "duration_s": 106.10206866264343,
+          "error": null,
+          "finished_at": "2026-08-28T22:15:30+0200",
+          "finished_epoch": 1787948130.9372725,
+          "result": "completed",
+          "started_at": "2026-08-28T22:13:44+0200",
+          "started_epoch": 1787948024.835204
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 49536,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33_patches.h5"
+        },
+        "features_path": {
+          "bytes": 1951416,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_keep/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 180889,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:15:30+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33__9cf6cc008026.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:conch_v1",
+    "last_updated_at": "2026-08-28T22:08:52+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579307/wsi-cache-15579307/gpu_0/batch_52/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.svs__9cf6cc008026",
+    "name": "TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v1": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 21200,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/patches/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v1": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "11e0773c899e",
+          "duration_s": 30.267083644866943,
+          "error": null,
+          "finished_at": "2026-08-28T22:08:52+0200",
+          "finished_epoch": 1787947732.2861218,
+          "result": "completed",
+          "started_at": "2026-08-28T22:08:22+0200",
+          "started_epoch": 1787947702.0190382
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 21200,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/patches/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33_patches.h5"
+        },
+        "features_path": {
+          "bytes": 393800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/features_conch_v1/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 180889,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:08:52+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33__9d2318430552.json

@@ -0,0 +1,53 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "skipped",
+    "last_task": "coords",
+    "last_updated_at": "2026-08-28T23:08:39+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579308/wsi-cache-15579308/gpu_0/batch_52/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.svs__9d2318430552",
+    "name": "TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 11384,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/patches/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 180889,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-3915-01Z-00-DX1.0f98e7eb-cdb0-49c2-967c-242268cfbd33.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:08:39+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c__26b05c4cc21e.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
+    "dimensions": [
+      21103,
+      67267
+    ],
+    "level_count": 4,
+    "mag": 40,
+    "mpp": 0.252
+  },
+  "resume": {
+    "last_status": "completed",
+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-28T21:48:13+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579310/wsi-cache-15579310/gpu_0/batch_53/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.svs__26b05c4cc21e",
+    "name": "TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 11160,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "9689d09aa178",
+          "duration_s": 23.357875108718872,
+          "error": null,
+          "finished_at": "2026-08-28T21:40:49+0200",
+          "finished_epoch": 1787946049.4858184,
+          "result": "completed",
+          "started_at": "2026-08-28T21:40:26+0200",
+          "started_epoch": 1787946026.1279433
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 11160,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c_patches.h5"
+        },
+        "features_path": {
+          "bytes": 136296,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_conch_v15/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 112050,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "a2f980498a3e",
+          "duration_s": 0.1445457935333252,
+          "error": null,
+          "finished_at": "2026-08-28T21:48:13+0200",
+          "finished_epoch": 1787946493.3022707,
+          "result": "completed",
+          "started_at": "2026-08-28T21:48:13+0200",
+          "started_epoch": 1787946493.1577249
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 136296,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_conch_v15/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.h5"
+        },
+        "slide_features_path": {
+          "bytes": 45696,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/slide_features_titan/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T21:48:13+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c__4dc84cb550b3.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-08-28T22:16:03+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579312/wsi-cache-15579312/gpu_0/batch_53/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.svs__4dc84cb550b3",
+    "name": "TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "keep": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:keep": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "75dede32a04b",
+          "duration_s": 28.724438667297363,
+          "error": null,
+          "finished_at": "2026-08-28T22:16:03+0200",
+          "finished_epoch": 1787948163.3932588,
+          "result": "completed",
+          "started_at": "2026-08-28T22:15:34+0200",
+          "started_epoch": 1787948134.6688201
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c_patches.h5"
+        },
+        "features_path": {
+          "bytes": 390856,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_keep/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 112050,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:16:03+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c__62cd61d9fce3.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:conch_v1",
+    "last_updated_at": "2026-08-28T22:09:16+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579307/wsi-cache-15579307/gpu_0/batch_53/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.svs__62cd61d9fce3",
+    "name": "TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v1": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 11160,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/patches/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v1": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "c08d83852c17",
+          "duration_s": 14.023364067077637,
+          "error": null,
+          "finished_at": "2026-08-28T22:09:16+0200",
+          "finished_epoch": 1787947756.808318,
+          "result": "completed",
+          "started_at": "2026-08-28T22:09:02+0200",
+          "started_epoch": 1787947742.7849538
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 11160,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/patches/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c_patches.h5"
+        },
+        "features_path": {
+          "bytes": 95336,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/features_conch_v1/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 112050,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:09:16+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c__9995b1f0e5e6.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
+    "dimensions": [
+      21103,
+      67267
+    ],
+    "level_count": 4,
+    "mag": 40,
+    "mpp": 0.252
+  },
+  "resume": {
+    "last_status": "completed",
+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-28T23:12:25+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579309/wsi-cache-15579309/gpu_0/batch_53/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.svs__9995b1f0e5e6",
+    "name": "TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "51d471d1039d",
+          "duration_s": 30.12726068496704,
+          "error": null,
+          "finished_at": "2026-08-28T22:57:13+0200",
+          "finished_epoch": 1787950633.6318738,
+          "result": "completed",
+          "started_at": "2026-08-28T22:56:43+0200",
+          "started_epoch": 1787950603.5046132
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c_patches.h5"
+        },
+        "features_path": {
+          "bytes": 390856,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 112050,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "bc3a605eec6f",
+          "duration_s": 0.2546346187591553,
+          "error": null,
+          "finished_at": "2026-08-28T23:12:25+0200",
+          "finished_epoch": 1787951545.9423363,
+          "result": "completed",
+          "started_at": "2026-08-28T23:12:25+0200",
+          "started_epoch": 1787951545.6877017
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 390856,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.h5"
+        },
+        "slide_features_path": {
+          "bytes": 52976,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/slide_features_titan/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:12:25+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c__c7410773cff7.json

@@ -1,9 +1,9 @@
 {
   "meta": {},
   "resume": {
-    "last_status": "skipped",
+    "last_status": "completed",
     "last_task": "coords",
-    "last_updated_at": "2026-08-26T07:42:07+0200"
+    "last_updated_at": "2026-08-28T15:40:17+0200"
   },
   "schema_version": 2,
   "slide": {
@@ -15,7 +15,7 @@
     "rel_path": null
   },
   "summary": {
-    "coords": "skipped (already_generated)",
+    "coords": "completed (already_generated)",
     "segmentation": "skipped (already_segmented)"
   },
   "tasks": {
@@ -61,23 +61,73 @@
           "result": "completed",
           "started_at": "2026-08-26T06:26:55+0200",
           "started_epoch": 1787718415.4037814
+        },
+        {
+          "attempt_id": "02e41e805dcb",
+          "duration_s": 0.22529363632202148,
+          "error": null,
+          "finished_at": "2026-08-28T15:10:00+0200",
+          "finished_epoch": 1787922600.266382,
+          "result": "completed",
+          "started_at": "2026-08-28T15:10:00+0200",
+          "started_epoch": 1787922600.0410883
+        },
+        {
+          "attempt_id": "150bb95dffda",
+          "duration_s": 0.19496965408325195,
+          "error": null,
+          "finished_at": "2026-08-28T15:17:33+0200",
+          "finished_epoch": 1787923053.8081634,
+          "result": "completed",
+          "started_at": "2026-08-28T15:17:33+0200",
+          "started_epoch": 1787923053.6131938
+        },
+        {
+          "attempt_id": "e58859264d0c",
+          "duration_s": 0.16519975662231445,
+          "error": null,
+          "finished_at": "2026-08-28T15:24:51+0200",
+          "finished_epoch": 1787923491.9560509,
+          "result": "completed",
+          "started_at": "2026-08-28T15:24:51+0200",
+          "started_epoch": 1787923491.790851
+        },
+        {
+          "attempt_id": "a8afded0a191",
+          "duration_s": 0.18497586250305176,
+          "error": null,
+          "finished_at": "2026-08-28T15:32:50+0200",
+          "finished_epoch": 1787923970.3575187,
+          "result": "completed",
+          "started_at": "2026-08-28T15:32:50+0200",
+          "started_epoch": 1787923970.1725428
+        },
+        {
+          "attempt_id": "da6e65296639",
+          "duration_s": 0.20359468460083008,
+          "error": null,
+          "finished_at": "2026-08-28T15:40:17+0200",
+          "finished_epoch": 1787924417.6057317,
+          "result": "completed",
+          "started_at": "2026-08-28T15:40:17+0200",
+          "started_epoch": 1787924417.402137
         }
       ],
-      "message": "Patch coords already generated; skipping.",
+      "message": "Patch coords generated.",
       "outputs": {
         "coords_h5": {
-          "bytes": 127568,
+          "bytes": 11160,
           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_224px_0px_overlap/patches/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c_patches.h5"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c_patches.h5"
         },
         "coords_viz": {
-          "bytes": 56329,
+          "bytes": 55699,
           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_384px_0px_overlap/visualization/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.jpg"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/visualization/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.jpg"
         }
       },
       "reason": "already_generated",
-      "status": "skipped"
+      "status": "completed"
     },
     "segmentation": {
       "_active_attempt_id": null,
@@ -111,5 +161,5 @@
     }
   },
   "trident_version": "0.3.0",
-  "updated_at": "2026-08-26T07:42:07+0200"
+  "updated_at": "2026-08-28T15:40:17+0200"
 }

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c__c88129e7b0a5.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-08-28T23:29:18+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579313/wsi-cache-15579313/gpu_0/batch_53/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.svs__c88129e7b0a5",
+    "name": "TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "keep": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 11160,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:keep": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "edc76d693cbf",
+          "duration_s": 25.42369556427002,
+          "error": null,
+          "finished_at": "2026-08-28T23:29:18+0200",
+          "finished_epoch": 1787952558.5059698,
+          "result": "completed",
+          "started_at": "2026-08-28T23:28:53+0200",
+          "started_epoch": 1787952533.0822742
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 11160,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c_patches.h5"
+        },
+        "features_path": {
+          "bytes": 136296,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_keep/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 112050,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:29:18+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c__df4fe7cddf79.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:conch_v1",
+    "last_updated_at": "2026-08-28T23:19:43+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579308/wsi-cache-15579308/gpu_0/batch_53/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.svs__df4fe7cddf79",
+    "name": "TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v1": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 10744,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/patches/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v1": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "d9a369fd40ab",
+          "duration_s": 14.967867136001587,
+          "error": null,
+          "finished_at": "2026-08-28T23:19:43+0200",
+          "finished_epoch": 1787951983.5325665,
+          "result": "completed",
+          "started_at": "2026-08-28T23:19:28+0200",
+          "started_epoch": 1787951968.5646994
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 10744,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/patches/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c_patches.h5"
+        },
+        "features_path": {
+          "bytes": 41672,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/features_conch_v1/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 112050,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-4097-01Z-00-DX1.9d34ecf6-35db-4b8f-b7f8-f5ae4183a49c.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:19:43+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926__346147e35b98.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
+    "dimensions": [
+      141009,
+      62428
+    ],
+    "level_count": 4,
+    "mag": 40,
+    "mpp": 0.252
+  },
+  "resume": {
+    "last_status": "completed",
+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-28T23:12:26+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579309/wsi-cache-15579309/gpu_0/batch_53/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926.svs__346147e35b98",
+    "name": "TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 49536,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "3f893db8e022",
+          "duration_s": 108.91384220123291,
+          "error": null,
+          "finished_at": "2026-08-28T22:59:02+0200",
+          "finished_epoch": 1787950742.5776205,
+          "result": "completed",
+          "started_at": "2026-08-28T22:57:13+0200",
+          "started_epoch": 1787950633.6637783
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 49536,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926_patches.h5"
+        },
+        "features_path": {
+          "bytes": 1899192,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 179147,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "54872f93b89c",
+          "duration_s": 0.16151952743530273,
+          "error": null,
+          "finished_at": "2026-08-28T23:12:26+0200",
+          "finished_epoch": 1787951546.131039,
+          "result": "completed",
+          "started_at": "2026-08-28T23:12:25+0200",
+          "started_epoch": 1787951545.9695194
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 1899192,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926.h5"
+        },
+        "slide_features_path": {
+          "bytes": 84712,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/slide_features_titan/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:12:26+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926__60734fcc022a.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-08-28T23:30:13+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579313/wsi-cache-15579313/gpu_0/batch_53/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926.svs__60734fcc022a",
+    "name": "TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "keep": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 25080,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:keep": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "4efb4d717440",
+          "duration_s": 54.98343777656555,
+          "error": null,
+          "finished_at": "2026-08-28T23:30:13+0200",
+          "finished_epoch": 1787952613.5086439,
+          "result": "completed",
+          "started_at": "2026-08-28T23:29:18+0200",
+          "started_epoch": 1787952558.525206
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 25080,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926_patches.h5"
+        },
+        "features_path": {
+          "bytes": 587688,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_keep/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 179147,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:30:13+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926__827ffdca661f.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-08-28T22:17:50+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579312/wsi-cache-15579312/gpu_0/batch_53/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926.svs__827ffdca661f",
+    "name": "TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "keep": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 49536,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:keep": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "af897395212c",
+          "duration_s": 106.75079560279846,
+          "error": null,
+          "finished_at": "2026-08-28T22:17:50+0200",
+          "finished_epoch": 1787948270.1637354,
+          "result": "completed",
+          "started_at": "2026-08-28T22:16:03+0200",
+          "started_epoch": 1787948163.4129398
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 49536,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926_patches.h5"
+        },
+        "features_path": {
+          "bytes": 1899192,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_keep/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 179147,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:17:50+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926__d7f671ac8930.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:conch_v1",
+    "last_updated_at": "2026-08-28T23:20:26+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579308/wsi-cache-15579308/gpu_0/batch_53/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926.svs__d7f671ac8930",
+    "name": "TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v1": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 11432,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/patches/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v1": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "2ebaabb0f7be",
+          "duration_s": 42.921520948410034,
+          "error": null,
+          "finished_at": "2026-08-28T23:20:26+0200",
+          "finished_epoch": 1787952026.4771426,
+          "result": "completed",
+          "started_at": "2026-08-28T23:19:43+0200",
+          "started_epoch": 1787951983.5556216
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 11432,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/patches/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926_patches.h5"
+        },
+        "features_path": {
+          "bytes": 130424,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/features_conch_v1/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 179147,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:20:26+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926__df8b85ab77a8.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
+    "dimensions": [
+      141009,
+      62428
+    ],
+    "level_count": 4,
+    "mag": 40,
+    "mpp": 0.252
+  },
+  "resume": {
+    "last_status": "completed",
+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-28T21:48:13+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579310/wsi-cache-15579310/gpu_0/batch_53/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926.svs__df8b85ab77a8",
+    "name": "TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 25080,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "709a6cc31324",
+          "duration_s": 54.50897526741028,
+          "error": null,
+          "finished_at": "2026-08-28T21:41:44+0200",
+          "finished_epoch": 1787946104.0105577,
+          "result": "completed",
+          "started_at": "2026-08-28T21:40:49+0200",
+          "started_epoch": 1787946049.5015824
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 25080,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926_patches.h5"
+        },
+        "features_path": {
+          "bytes": 587688,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_conch_v15/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 179147,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "90848018cbba",
+          "duration_s": 0.0435335636138916,
+          "error": null,
+          "finished_at": "2026-08-28T21:48:13+0200",
+          "finished_epoch": 1787946493.3595443,
+          "result": "completed",
+          "started_at": "2026-08-28T21:48:13+0200",
+          "started_epoch": 1787946493.3160107
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 587688,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_conch_v15/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926.h5"
+        },
+        "slide_features_path": {
+          "bytes": 58208,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/slide_features_titan/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T21:48:13+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926__ef043db41882.json

@@ -1,9 +1,9 @@
 {
   "meta": {},
   "resume": {
-    "last_status": "skipped",
+    "last_status": "completed",
     "last_task": "coords",
-    "last_updated_at": "2026-08-26T07:42:07+0200"
+    "last_updated_at": "2026-08-28T15:40:17+0200"
   },
   "schema_version": 2,
   "slide": {
@@ -15,7 +15,7 @@
     "rel_path": null
   },
   "summary": {
-    "coords": "skipped (already_generated)",
+    "coords": "completed (already_generated)",
     "segmentation": "skipped (already_segmented)"
   },
   "tasks": {
@@ -61,23 +61,73 @@
           "result": "completed",
           "started_at": "2026-08-26T06:26:55+0200",
           "started_epoch": 1787718415.748148
+        },
+        {
+          "attempt_id": "f5e673433d9e",
+          "duration_s": 0.4350597858428955,
+          "error": null,
+          "finished_at": "2026-08-28T15:10:00+0200",
+          "finished_epoch": 1787922600.7652025,
+          "result": "completed",
+          "started_at": "2026-08-28T15:10:00+0200",
+          "started_epoch": 1787922600.3301427
+        },
+        {
+          "attempt_id": "85d8b542a95a",
+          "duration_s": 0.2840285301208496,
+          "error": null,
+          "finished_at": "2026-08-28T15:17:34+0200",
+          "finished_epoch": 1787923054.1442988,
+          "result": "completed",
+          "started_at": "2026-08-28T15:17:33+0200",
+          "started_epoch": 1787923053.8602703
+        },
+        {
+          "attempt_id": "53c54e452482",
+          "duration_s": 0.2693197727203369,
+          "error": null,
+          "finished_at": "2026-08-28T15:24:52+0200",
+          "finished_epoch": 1787923492.2671492,
+          "result": "completed",
+          "started_at": "2026-08-28T15:24:51+0200",
+          "started_epoch": 1787923491.9978294
+        },
+        {
+          "attempt_id": "61030462aa33",
+          "duration_s": 0.32486510276794434,
+          "error": null,
+          "finished_at": "2026-08-28T15:32:50+0200",
+          "finished_epoch": 1787923970.7348068,
+          "result": "completed",
+          "started_at": "2026-08-28T15:32:50+0200",
+          "started_epoch": 1787923970.4099417
+        },
+        {
+          "attempt_id": "f2b3a7fc4b7b",
+          "duration_s": 0.27901506423950195,
+          "error": null,
+          "finished_at": "2026-08-28T15:40:17+0200",
+          "finished_epoch": 1787924417.9320252,
+          "result": "completed",
+          "started_at": "2026-08-28T15:40:17+0200",
+          "started_epoch": 1787924417.6530101
         }
       ],
-      "message": "Patch coords already generated; skipping.",
+      "message": "Patch coords generated.",
       "outputs": {
         "coords_h5": {
-          "bytes": 642832,
+          "bytes": 25080,
           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_224px_0px_overlap/patches/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926_patches.h5"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926_patches.h5"
         },
         "coords_viz": {
-          "bytes": 89670,
+          "bytes": 84214,
           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_384px_0px_overlap/visualization/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926.jpg"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/visualization/TCGA-41-5651-01Z-00-DX1.84aa5ff7-d54c-43d7-8f03-c9012d303926.jpg"
         }
       },
       "reason": "already_generated",
-      "status": "skipped"
+      "status": "completed"
     },
     "segmentation": {
       "_active_attempt_id": null,
@@ -111,5 +161,5 @@
     }
   },
   "trident_version": "0.3.0",
-  "updated_at": "2026-08-26T07:42:07+0200"
+  "updated_at": "2026-08-28T15:40:17+0200"
 }