Add files using upload-large-folder tool

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95__f732f1a70bbd.json

@@ -1,9 +1,9 @@
 {
   "meta": {},
   "resume": {
-    "last_status": "skipped",
+    "last_status": "completed",
     "last_task": "coords",
-    "last_updated_at": "2026-08-26T07:42:07+0200"
+    "last_updated_at": "2026-08-28T15:40:13+0200"
   },
   "schema_version": 2,
   "slide": {
@@ -15,7 +15,7 @@
     "rel_path": null
   },
   "summary": {
-    "coords": "skipped (already_generated)",
+    "coords": "completed (already_generated)",
     "segmentation": "skipped (already_segmented)"
   },
   "tasks": {
@@ -61,23 +61,73 @@
           "result": "completed",
           "started_at": "2026-08-26T06:26:48+0200",
           "started_epoch": 1787718408.4165065
+        },
+        {
+          "attempt_id": "ab46c667c815",
+          "duration_s": 0.9424581527709961,
+          "error": null,
+          "finished_at": "2026-08-28T15:09:54+0200",
+          "finished_epoch": 1787922594.0977137,
+          "result": "completed",
+          "started_at": "2026-08-28T15:09:53+0200",
+          "started_epoch": 1787922593.1552556
+        },
+        {
+          "attempt_id": "db7093ab2ca0",
+          "duration_s": 0.33565807342529297,
+          "error": null,
+          "finished_at": "2026-08-28T15:17:29+0200",
+          "finished_epoch": 1787923049.336083,
+          "result": "completed",
+          "started_at": "2026-08-28T15:17:28+0200",
+          "started_epoch": 1787923049.0004249
+        },
+        {
+          "attempt_id": "4be71f358b1c",
+          "duration_s": 0.3236813545227051,
+          "error": null,
+          "finished_at": "2026-08-28T15:24:47+0200",
+          "finished_epoch": 1787923487.5588064,
+          "result": "completed",
+          "started_at": "2026-08-28T15:24:47+0200",
+          "started_epoch": 1787923487.235125
+        },
+        {
+          "attempt_id": "f3b623eb5546",
+          "duration_s": 0.3667275905609131,
+          "error": null,
+          "finished_at": "2026-08-28T15:32:45+0200",
+          "finished_epoch": 1787923965.6121423,
+          "result": "completed",
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+          "started_epoch": 1787923965.2454147
+        },
+        {
+          "attempt_id": "36e7fcef540c",
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+          "error": null,
+          "finished_at": "2026-08-28T15:40:13+0200",
+          "finished_epoch": 1787924413.0422516,
+          "result": "completed",
+          "started_at": "2026-08-28T15:40:12+0200",
+          "started_epoch": 1787924412.7059183
         }
       ],
-      "message": "Patch coords already generated; skipping.",
+      "message": "Patch coords generated.",
       "outputs": {
         "coords_h5": {
-          "bytes": 1080632,
+          "bytes": 27696,
           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_224px_0px_overlap/patches/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95_patches.h5"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95_patches.h5"
         },
         "coords_viz": {
-          "bytes": 238627,
+          "bytes": 182554,
           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_384px_0px_overlap/visualization/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95.jpg"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/visualization/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95.jpg"
         }
       },
       "reason": "already_generated",
-      "status": "skipped"
+      "status": "completed"
     },
     "segmentation": {
       "_active_attempt_id": null,
@@ -111,5 +161,5 @@
     }
   },
   "trident_version": "0.3.0",
-  "updated_at": "2026-08-26T07:42:07+0200"
+  "updated_at": "2026-08-28T15:40:13+0200"
 }

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95__fd5bb0974865.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
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+      41233
+    ],
+    "level_count": 3,
+    "mag": 20,
+    "mpp": 0.5015
+  },
+  "resume": {
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+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-28T22:56:30+0200"
+  },
+  "schema_version": 2,
+  "slide": {
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+    "ext": ".svs",
+    "id": "TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95.svs__fd5bb0974865",
+    "name": "TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 66904,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
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+          "duration_s": 24.529561042785645,
+          "error": null,
+          "finished_at": "2026-08-28T22:47:15+0200",
+          "finished_epoch": 1787950035.5482223,
+          "result": "completed",
+          "started_at": "2026-08-28T22:46:51+0200",
+          "started_epoch": 1787950011.0186613
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 66904,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95_patches.h5"
+        },
+        "features_path": {
+          "bytes": 2900392,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 361416,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "dd48eda308cb",
+          "duration_s": 0.19696331024169922,
+          "error": null,
+          "finished_at": "2026-08-28T22:56:30+0200",
+          "finished_epoch": 1787950590.1850967,
+          "result": "completed",
+          "started_at": "2026-08-28T22:56:29+0200",
+          "started_epoch": 1787950589.9881334
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 2900392,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95.h5"
+        },
+        "slide_features_path": {
+          "bytes": 101888,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/slide_features_titan/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:56:30+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2__034b5acb0813.json

@@ -1,9 +1,9 @@
 {
   "meta": {},
   "resume": {
-    "last_status": "skipped",
+    "last_status": "completed",
     "last_task": "coords",
-    "last_updated_at": "2026-08-26T07:42:07+0200"
+    "last_updated_at": "2026-08-28T15:40:13+0200"
   },
   "schema_version": 2,
   "slide": {
@@ -15,7 +15,7 @@
     "rel_path": null
   },
   "summary": {
-    "coords": "skipped (already_generated)",
+    "coords": "completed (already_generated)",
     "segmentation": "skipped (already_segmented)"
   },
   "tasks": {
@@ -61,23 +61,73 @@
           "result": "completed",
           "started_at": "2026-08-26T06:26:49+0200",
           "started_epoch": 1787718409.1144753
+        },
+        {
+          "attempt_id": "74ba2cd55e7d",
+          "duration_s": 0.40500378608703613,
+          "error": null,
+          "finished_at": "2026-08-28T15:09:54+0200",
+          "finished_epoch": 1787922594.5582564,
+          "result": "completed",
+          "started_at": "2026-08-28T15:09:54+0200",
+          "started_epoch": 1787922594.1532526
+        },
+        {
+          "attempt_id": "cc7a16473968",
+          "duration_s": 0.28021907806396484,
+          "error": null,
+          "finished_at": "2026-08-28T15:17:29+0200",
+          "finished_epoch": 1787923049.65721,
+          "result": "completed",
+          "started_at": "2026-08-28T15:17:29+0200",
+          "started_epoch": 1787923049.376991
+        },
+        {
+          "attempt_id": "faeb18129581",
+          "duration_s": 0.2641482353210449,
+          "error": null,
+          "finished_at": "2026-08-28T15:24:47+0200",
+          "finished_epoch": 1787923487.860228,
+          "result": "completed",
+          "started_at": "2026-08-28T15:24:47+0200",
+          "started_epoch": 1787923487.5960798
+        },
+        {
+          "attempt_id": "2bf02f7e7538",
+          "duration_s": 0.29718565940856934,
+          "error": null,
+          "finished_at": "2026-08-28T15:32:45+0200",
+          "finished_epoch": 1787923965.9554145,
+          "result": "completed",
+          "started_at": "2026-08-28T15:32:45+0200",
+          "started_epoch": 1787923965.6582289
+        },
+        {
+          "attempt_id": "48f6634bc2fe",
+          "duration_s": 0.2848505973815918,
+          "error": null,
+          "finished_at": "2026-08-28T15:40:13+0200",
+          "finished_epoch": 1787924413.370417,
+          "result": "completed",
+          "started_at": "2026-08-28T15:40:13+0200",
+          "started_epoch": 1787924413.0855665
         }
       ],
-      "message": "Patch coords already generated; skipping.",
+      "message": "Patch coords generated.",
       "outputs": {
         "coords_h5": {
-          "bytes": 586640,
+          "bytes": 20768,
           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_224px_0px_overlap/patches/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2_patches.h5"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2_patches.h5"
         },
         "coords_viz": {
-          "bytes": 235883,
+          "bytes": 191226,
           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_384px_0px_overlap/visualization/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.jpg"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/visualization/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.jpg"
         }
       },
       "reason": "already_generated",
-      "status": "skipped"
+      "status": "completed"
     },
     "segmentation": {
       "_active_attempt_id": null,
@@ -111,5 +161,5 @@
     }
   },
   "trident_version": "0.3.0",
-  "updated_at": "2026-08-26T07:42:07+0200"
+  "updated_at": "2026-08-28T15:40:13+0200"
 }

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2__04202a236ad6.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-08-28T22:06:56+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579312/wsi-cache-15579312/gpu_0/batch_52/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.svs",
+    "ext": ".svs",
+    "id": "TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.svs__04202a236ad6",
+    "name": "TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "keep": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 42256,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:keep": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "931ec4889b2a",
+          "duration_s": 11.775075912475586,
+          "error": null,
+          "finished_at": "2026-08-28T22:06:56+0200",
+          "finished_epoch": 1787947616.6407537,
+          "result": "completed",
+          "started_at": "2026-08-28T22:06:44+0200",
+          "started_epoch": 1787947604.8656778
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 42256,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2_patches.h5"
+        },
+        "features_path": {
+          "bytes": 1640920,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_keep/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 375711,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:06:56+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2__4eeb5ddbd9e1.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:conch_v1",
+    "last_updated_at": "2026-08-28T23:12:48+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579308/wsi-cache-15579308/gpu_0/batch_52/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.svs",
+    "ext": ".svs",
+    "id": "TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.svs__4eeb5ddbd9e1",
+    "name": "TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v1": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 11272,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/patches/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v1": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "2716dbd6b6cd",
+          "duration_s": 43.70816683769226,
+          "error": null,
+          "finished_at": "2026-08-28T23:12:48+0200",
+          "finished_epoch": 1787951568.9332066,
+          "result": "completed",
+          "started_at": "2026-08-28T23:12:05+0200",
+          "started_epoch": 1787951525.2250397
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 11272,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/patches/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2_patches.h5"
+        },
+        "features_path": {
+          "bytes": 109784,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/features_conch_v1/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 375711,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:12:48+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2__6ec714d9254d.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:conch_v1",
+    "last_updated_at": "2026-08-28T22:04:27+0200"
+  },
+  "schema_version": 2,
+  "slide": {
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+    "ext": ".svs",
+    "id": "TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.svs__6ec714d9254d",
+    "name": "TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
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+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 20784,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/patches/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v1": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
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+          "duration_s": 28.69992232322693,
+          "error": null,
+          "finished_at": "2026-08-28T22:04:27+0200",
+          "finished_epoch": 1787947467.3501873,
+          "result": "completed",
+          "started_at": "2026-08-28T22:03:58+0200",
+          "started_epoch": 1787947438.650265
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 20784,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/patches/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2_patches.h5"
+        },
+        "features_path": {
+          "bytes": 340136,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/features_conch_v1/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 375711,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:04:27+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2__89d8344b112b.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
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+      30001,
+      30351
+    ],
+    "level_count": 3,
+    "mag": 20,
+    "mpp": 0.5015
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+    "last_updated_at": "2026-08-28T21:40:20+0200"
+  },
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+  "slide": {
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+    "ext": ".svs",
+    "id": "TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.svs__89d8344b112b",
+    "name": "TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
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+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
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+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 20768,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
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+          "duration_s": 7.1801557540893555,
+          "error": null,
+          "finished_at": "2026-08-28T21:35:17+0200",
+          "finished_epoch": 1787945717.035847,
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+          "started_at": "2026-08-28T21:35:09+0200",
+          "started_epoch": 1787945709.8556912
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 20768,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2_patches.h5"
+        },
+        "features_path": {
+          "bytes": 491672,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_conch_v15/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 375711,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
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+        {
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+          "finished_at": "2026-08-28T21:40:20+0200",
+          "finished_epoch": 1787946020.484587,
+          "result": "completed",
+          "started_at": "2026-08-28T21:40:20+0200",
+          "started_epoch": 1787946020.4499338
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 491672,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_conch_v15/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.h5"
+        },
+        "slide_features_path": {
+          "bytes": 55592,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/slide_features_titan/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T21:40:20+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2__ccc711ab2d04.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-08-28T23:21:40+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579313/wsi-cache-15579313/gpu_0/batch_52/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.svs",
+    "ext": ".svs",
+    "id": "TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.svs__ccc711ab2d04",
+    "name": "TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
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+    "patch_features": {
+      "keep": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 20768,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:keep": {
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+      "attempts": [
+        {
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+          "duration_s": 6.989093542098999,
+          "error": null,
+          "finished_at": "2026-08-28T23:21:40+0200",
+          "finished_epoch": 1787952100.2742229,
+          "result": "completed",
+          "started_at": "2026-08-28T23:21:33+0200",
+          "started_epoch": 1787952093.2851293
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 20768,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2_patches.h5"
+        },
+        "features_path": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_keep/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 375711,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:21:40+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2__e54450f7c831.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
+    "dimensions": [
+      30001,
+      30351
+    ],
+    "level_count": 3,
+    "mag": 20,
+    "mpp": 0.5015
+  },
+  "resume": {
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+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-28T22:56:30+0200"
+  },
+  "schema_version": 2,
+  "slide": {
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+    "ext": ".svs",
+    "id": "TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.svs__e54450f7c831",
+    "name": "TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 42256,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
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+          "duration_s": 15.867433547973633,
+          "error": null,
+          "finished_at": "2026-08-28T22:47:31+0200",
+          "finished_epoch": 1787950051.441387,
+          "result": "completed",
+          "started_at": "2026-08-28T22:47:15+0200",
+          "started_epoch": 1787950035.5739534
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 42256,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2_patches.h5"
+        },
+        "features_path": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 375711,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
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+          "duration_s": 0.13510942459106445,
+          "error": null,
+          "finished_at": "2026-08-28T22:56:30+0200",
+          "finished_epoch": 1787950590.3382204,
+          "result": "completed",
+          "started_at": "2026-08-28T22:56:30+0200",
+          "started_epoch": 1787950590.203111
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 1640920,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.h5"
+        },
+        "slide_features_path": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/slide_features_titan/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:56:30+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57__005dc89bb264.json

@@ -1,9 +1,9 @@
 {
   "meta": {},
   "resume": {
-    "last_status": "skipped",
+    "last_status": "completed",
     "last_task": "coords",
-    "last_updated_at": "2026-08-26T07:42:07+0200"
+    "last_updated_at": "2026-08-28T15:40:13+0200"
   },
   "schema_version": 2,
   "slide": {
@@ -15,7 +15,7 @@
     "rel_path": null
   },
   "summary": {
-    "coords": "skipped (already_generated)",
+    "coords": "completed (already_generated)",
     "segmentation": "skipped (already_segmented)"
   },
   "tasks": {
@@ -61,23 +61,73 @@
           "result": "completed",
           "started_at": "2026-08-26T06:26:49+0200",
           "started_epoch": 1787718409.6314194
+        },
+        {
+          "attempt_id": "2a5fc277daa8",
+          "duration_s": 0.4911153316497803,
+          "error": null,
+          "finished_at": "2026-08-28T15:09:55+0200",
+          "finished_epoch": 1787922595.0951786,
+          "result": "completed",
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+          "started_epoch": 1787922594.6040633
+        },
+        {
+          "attempt_id": "c3889bfaa2c9",
+          "duration_s": 0.3100728988647461,
+          "error": null,
+          "finished_at": "2026-08-28T15:17:29+0200",
+          "finished_epoch": 1787923049.995755,
+          "result": "completed",
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+          "started_epoch": 1787923049.685682
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+        {
+          "attempt_id": "597e9460ee41",
+          "duration_s": 0.299776554107666,
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+          "finished_epoch": 1787923488.1812706,
+          "result": "completed",
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+          "started_epoch": 1787923487.881494
+        },
+        {
+          "attempt_id": "2bffa40ffe80",
+          "duration_s": 0.31523609161376953,
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+          "finished_at": "2026-08-28T15:32:46+0200",
+          "finished_epoch": 1787923966.3002484,
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+          "started_epoch": 1787923965.9850123
+        },
+        {
+          "attempt_id": "b3c905af5232",
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+          "finished_at": "2026-08-28T15:40:13+0200",
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+          "started_epoch": 1787924413.3999395
         }
       ],
-      "message": "Patch coords already generated; skipping.",
+      "message": "Patch coords generated.",
       "outputs": {
         "coords_h5": {
-          "bytes": 306040,
+          "bytes": 17800,
           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_224px_0px_overlap/patches/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57_patches.h5"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57_patches.h5"
         },
         "coords_viz": {
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           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_384px_0px_overlap/visualization/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.jpg"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/visualization/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.jpg"
         }
       },
       "reason": "already_generated",
-      "status": "skipped"
+      "status": "completed"
     },
     "segmentation": {
       "_active_attempt_id": null,
@@ -111,5 +161,5 @@
     }
   },
   "trident_version": "0.3.0",
-  "updated_at": "2026-08-26T07:42:07+0200"
+  "updated_at": "2026-08-28T15:40:13+0200"
 }

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57__26baa72a4d2f.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:conch_v1",
+    "last_updated_at": "2026-08-28T23:13:22+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579308/wsi-cache-15579308/gpu_0/batch_52/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.svs",
+    "ext": ".svs",
+    "id": "TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.svs__26baa72a4d2f",
+    "name": "TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
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+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 10920,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/patches/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v1": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "b045e2e550ec",
+          "duration_s": 33.35941672325134,
+          "error": null,
+          "finished_at": "2026-08-28T23:13:22+0200",
+          "finished_epoch": 1787951602.3171544,
+          "result": "completed",
+          "started_at": "2026-08-28T23:12:48+0200",
+          "started_epoch": 1787951568.9577377
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 10920,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/patches/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57_patches.h5"
+        },
+        "features_path": {
+          "bytes": 64376,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/features_conch_v1/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 225831,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:13:22+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57__59a98219b52a.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
+    "dimensions": [
+      28001,
+      15286
+    ],
+    "level_count": 3,
+    "mag": 20,
+    "mpp": 0.5015
+  },
+  "resume": {
+    "last_status": "completed",
+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-28T22:56:30+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579309/wsi-cache-15579309/gpu_0/batch_52/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.svs",
+    "ext": ".svs",
+    "id": "TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.svs__59a98219b52a",
+    "name": "TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
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+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 27696,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "10e7ef068699",
+          "duration_s": 10.005249261856079,
+          "error": null,
+          "finished_at": "2026-08-28T22:47:41+0200",
+          "finished_epoch": 1787950061.479959,
+          "result": "completed",
+          "started_at": "2026-08-28T22:47:31+0200",
+          "started_epoch": 1787950051.4747097
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 27696,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57_patches.h5"
+        },
+        "features_path": {
+          "bytes": 811032,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 225831,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "de7659183d25",
+          "duration_s": 0.08273696899414062,
+          "error": null,
+          "finished_at": "2026-08-28T22:56:30+0200",
+          "finished_epoch": 1787950590.4382133,
+          "result": "completed",
+          "started_at": "2026-08-28T22:56:30+0200",
+          "started_epoch": 1787950590.3554764
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 811032,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.h5"
+        },
+        "slide_features_path": {
+          "bytes": 62872,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/slide_features_titan/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:56:30+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57__9f57949862fc.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:conch_v1",
+    "last_updated_at": "2026-08-28T22:04:53+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579307/wsi-cache-15579307/gpu_0/batch_52/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.svs",
+    "ext": ".svs",
+    "id": "TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.svs__9f57949862fc",
+    "name": "TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
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+    "patch_features": {
+      "conch_v1": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/patches/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v1": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "24206bd3ebfc",
+          "duration_s": 26.272626876831055,
+          "error": null,
+          "finished_at": "2026-08-28T22:04:53+0200",
+          "finished_epoch": 1787947493.651821,
+          "result": "completed",
+          "started_at": "2026-08-28T22:04:27+0200",
+          "started_epoch": 1787947467.379194
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/patches/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57_patches.h5"
+        },
+        "features_path": {
+          "bytes": 170696,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/features_conch_v1/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 225831,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:04:53+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57__b4934638fbe4.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-08-28T23:21:45+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579313/wsi-cache-15579313/gpu_0/batch_52/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.svs",
+    "ext": ".svs",
+    "id": "TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.svs__b4934638fbe4",
+    "name": "TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "keep": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:keep": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "096d93cf22e8",
+          "duration_s": 4.864474773406982,
+          "error": null,
+          "finished_at": "2026-08-28T23:21:45+0200",
+          "finished_epoch": 1787952105.158985,
+          "result": "completed",
+          "started_at": "2026-08-28T23:21:40+0200",
+          "started_epoch": 1787952100.2945101
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57_patches.h5"
+        },
+        "features_path": {
+          "bytes": 243400,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_keep/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 225831,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:21:45+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57__dfd83ba42d64.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-08-28T22:07:03+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579312/wsi-cache-15579312/gpu_0/batch_52/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.svs",
+    "ext": ".svs",
+    "id": "TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.svs__dfd83ba42d64",
+    "name": "TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "keep": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 27696,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:keep": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "7add3a64d6a3",
+          "duration_s": 6.637854337692261,
+          "error": null,
+          "finished_at": "2026-08-28T22:07:03+0200",
+          "finished_epoch": 1787947623.298887,
+          "result": "completed",
+          "started_at": "2026-08-28T22:06:56+0200",
+          "started_epoch": 1787947616.6610327
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 27696,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57_patches.h5"
+        },
+        "features_path": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_keep/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 225831,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:07:03+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57__e6cdd8c8038c.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
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+      28001,
+      15286
+    ],
+    "level_count": 3,
+    "mag": 20,
+    "mpp": 0.5015
+  },
+  "resume": {
+    "last_status": "completed",
+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-28T21:40:20+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579310/wsi-cache-15579310/gpu_0/batch_52/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.svs",
+    "ext": ".svs",
+    "id": "TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.svs__e6cdd8c8038c",
+    "name": "TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "8d0f5cccc667",
+          "duration_s": 5.520021677017212,
+          "error": null,
+          "finished_at": "2026-08-28T21:35:22+0200",
+          "finished_epoch": 1787945722.5709784,
+          "result": "completed",
+          "started_at": "2026-08-28T21:35:17+0200",
+          "started_epoch": 1787945717.0509567
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57_patches.h5"
+        },
+        "features_path": {
+          "bytes": 243400,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_conch_v15/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 225831,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
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+          "duration_s": 0.03172159194946289,
+          "error": null,
+          "finished_at": "2026-08-28T21:40:20+0200",
+          "finished_epoch": 1787946020.5350537,
+          "result": "completed",
+          "started_at": "2026-08-28T21:40:20+0200",
+          "started_epoch": 1787946020.5033321
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 243400,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_conch_v15/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.h5"
+        },
+        "slide_features_path": {
+          "bytes": 52976,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/slide_features_titan/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T21:40:20+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75__1e61a010b822.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
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+      30001,
+      35703
+    ],
+    "level_count": 3,
+    "mag": 20,
+    "mpp": 0.5015
+  },
+  "resume": {
+    "last_status": "completed",
+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-28T21:40:20+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579310/wsi-cache-15579310/gpu_0/batch_52/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.svs",
+    "ext": ".svs",
+    "id": "TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.svs__1e61a010b822",
+    "name": "TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 20976,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "8159ae9c9145",
+          "duration_s": 9.002404928207397,
+          "error": null,
+          "finished_at": "2026-08-28T21:35:31+0200",
+          "finished_epoch": 1787945731.5881426,
+          "result": "completed",
+          "started_at": "2026-08-28T21:35:22+0200",
+          "started_epoch": 1787945722.5857377
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 20976,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75_patches.h5"
+        },
+        "features_path": {
+          "bytes": 531816,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_conch_v15/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 343570,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
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+          "duration_s": 0.03369903564453125,
+          "error": null,
+          "finished_at": "2026-08-28T21:40:20+0200",
+          "finished_epoch": 1787946020.5809262,
+          "result": "completed",
+          "started_at": "2026-08-28T21:40:20+0200",
+          "started_epoch": 1787946020.5472271
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 531816,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_conch_v15/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.h5"
+        },
+        "slide_features_path": {
+          "bytes": 55592,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/slide_features_titan/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T21:40:20+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75__2f5ec7c468cc.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
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+      30001,
+      35703
+    ],
+    "level_count": 3,
+    "mag": 20,
+    "mpp": 0.5015
+  },
+  "resume": {
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+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-28T22:56:30+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579309/wsi-cache-15579309/gpu_0/batch_52/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.svs",
+    "ext": ".svs",
+    "id": "TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.svs__2f5ec7c468cc",
+    "name": "TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 49536,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
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+          "duration_s": 18.332826614379883,
+          "error": null,
+          "finished_at": "2026-08-28T22:47:59+0200",
+          "finished_epoch": 1787950079.841168,
+          "result": "completed",
+          "started_at": "2026-08-28T22:47:41+0200",
+          "started_epoch": 1787950061.5083413
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 49536,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75_patches.h5"
+        },
+        "features_path": {
+          "bytes": 1917624,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 343570,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "9f1365e5bf02",
+          "duration_s": 0.11114692687988281,
+          "error": null,
+          "finished_at": "2026-08-28T22:56:30+0200",
+          "finished_epoch": 1787950590.5668476,
+          "result": "completed",
+          "started_at": "2026-08-28T22:56:30+0200",
+          "started_epoch": 1787950590.4557006
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 1917624,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.h5"
+        },
+        "slide_features_path": {
+          "bytes": 84712,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/slide_features_titan/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:56:30+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75__6961f7d408b9.json

@@ -1,9 +1,9 @@
 {
   "meta": {},
   "resume": {
-    "last_status": "skipped",
+    "last_status": "completed",
     "last_task": "coords",
-    "last_updated_at": "2026-08-26T07:42:07+0200"
+    "last_updated_at": "2026-08-28T15:40:14+0200"
   },
   "schema_version": 2,
   "slide": {
@@ -15,7 +15,7 @@
     "rel_path": null
   },
   "summary": {
-    "coords": "skipped (already_generated)",
+    "coords": "completed (already_generated)",
     "segmentation": "skipped (already_segmented)"
   },
   "tasks": {
@@ -61,23 +61,73 @@
           "result": "completed",
           "started_at": "2026-08-26T06:26:50+0200",
           "started_epoch": 1787718410.12596
+        },
+        {
+          "attempt_id": "6bccc15033a8",
+          "duration_s": 0.451279878616333,
+          "error": null,
+          "finished_at": "2026-08-28T15:09:55+0200",
+          "finished_epoch": 1787922595.5914447,
+          "result": "completed",
+          "started_at": "2026-08-28T15:09:55+0200",
+          "started_epoch": 1787922595.1401649
+        },
+        {
+          "attempt_id": "f14cb84a169f",
+          "duration_s": 0.32888007164001465,
+          "error": null,
+          "finished_at": "2026-08-28T15:17:30+0200",
+          "finished_epoch": 1787923050.3557389,
+          "result": "completed",
+          "started_at": "2026-08-28T15:17:30+0200",
+          "started_epoch": 1787923050.0268588
+        },
+        {
+          "attempt_id": "13b3511a8294",
+          "duration_s": 0.2806994915008545,
+          "error": null,
+          "finished_at": "2026-08-28T15:24:48+0200",
+          "finished_epoch": 1787923488.4921744,
+          "result": "completed",
+          "started_at": "2026-08-28T15:24:48+0200",
+          "started_epoch": 1787923488.211475
+        },
+        {
+          "attempt_id": "b0883e676ddc",
+          "duration_s": 0.31593775749206543,
+          "error": null,
+          "finished_at": "2026-08-28T15:32:46+0200",
+          "finished_epoch": 1787923966.650199,
+          "result": "completed",
+          "started_at": "2026-08-28T15:32:46+0200",
+          "started_epoch": 1787923966.3342612
+        },
+        {
+          "attempt_id": "fc72643effec",
+          "duration_s": 0.29605984687805176,
+          "error": null,
+          "finished_at": "2026-08-28T15:40:14+0200",
+          "finished_epoch": 1787924414.0594487,
+          "result": "completed",
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+          "started_epoch": 1787924413.7633889
         }
       ],
-      "message": "Patch coords already generated; skipping.",
+      "message": "Patch coords generated.",
       "outputs": {
         "coords_h5": {
-          "bytes": 716200,
+          "bytes": 20976,
           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_224px_0px_overlap/patches/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75_patches.h5"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75_patches.h5"
         },
         "coords_viz": {
-          "bytes": 204330,
+          "bytes": 165160,
           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_384px_0px_overlap/visualization/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.jpg"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/visualization/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.jpg"
         }
       },
       "reason": "already_generated",
-      "status": "skipped"
+      "status": "completed"
     },
     "segmentation": {
       "_active_attempt_id": null,
@@ -111,5 +161,5 @@
     }
   },
   "trident_version": "0.3.0",
-  "updated_at": "2026-08-26T07:42:07+0200"
+  "updated_at": "2026-08-28T15:40:14+0200"
 }

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75__8c866907160c.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:conch_v1",
+    "last_updated_at": "2026-08-28T22:05:23+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579307/wsi-cache-15579307/gpu_0/batch_52/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.svs",
+    "ext": ".svs",
+    "id": "TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.svs__8c866907160c",
+    "name": "TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v1": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 20976,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/patches/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v1": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "308b7c94dfac",
+          "duration_s": 29.719301223754883,
+          "error": null,
+          "finished_at": "2026-08-28T22:05:23+0200",
+          "finished_epoch": 1787947523.3977747,
+          "result": "completed",
+          "started_at": "2026-08-28T22:04:53+0200",
+          "started_epoch": 1787947493.6784735
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 20976,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/patches/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75_patches.h5"
+        },
+        "features_path": {
+          "bytes": 364904,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/features_conch_v1/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 343570,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:05:23+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75__a0b8ac69ac0a.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:conch_v1",
+    "last_updated_at": "2026-08-28T23:14:08+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579308/wsi-cache-15579308/gpu_0/batch_52/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.svs",
+    "ext": ".svs",
+    "id": "TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.svs__a0b8ac69ac0a",
+    "name": "TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v1": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 11320,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/patches/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v1": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "04c58f241013",
+          "duration_s": 46.2578444480896,
+          "error": null,
+          "finished_at": "2026-08-28T23:14:08+0200",
+          "finished_epoch": 1787951648.602339,
+          "result": "completed",
+          "started_at": "2026-08-28T23:13:22+0200",
+          "started_epoch": 1787951602.3444946
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 11320,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/patches/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75_patches.h5"
+        },
+        "features_path": {
+          "bytes": 115976,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/features_conch_v1/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 343570,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:14:08+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75__cf6e21b03b32.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-08-28T23:21:53+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579313/wsi-cache-15579313/gpu_0/batch_52/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.svs",
+    "ext": ".svs",
+    "id": "TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.svs__cf6e21b03b32",
+    "name": "TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "keep": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 20976,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:keep": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "07535dfc7d70",
+          "duration_s": 8.772454500198364,
+          "error": null,
+          "finished_at": "2026-08-28T23:21:53+0200",
+          "finished_epoch": 1787952113.9466894,
+          "result": "completed",
+          "started_at": "2026-08-28T23:21:45+0200",
+          "started_epoch": 1787952105.1742349
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 20976,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75_patches.h5"
+        },
+        "features_path": {
+          "bytes": 531816,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_keep/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 343570,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:21:53+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75__f0f56c11811e.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-08-28T22:07:19+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579312/wsi-cache-15579312/gpu_0/batch_52/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.svs",
+    "ext": ".svs",
+    "id": "TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.svs__f0f56c11811e",
+    "name": "TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "keep": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 49536,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:keep": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "4952f1f7e365",
+          "duration_s": 16.349579572677612,
+          "error": null,
+          "finished_at": "2026-08-28T22:07:19+0200",
+          "finished_epoch": 1787947639.6706524,
+          "result": "completed",
+          "started_at": "2026-08-28T22:07:03+0200",
+          "started_epoch": 1787947623.3210728
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 49536,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75_patches.h5"
+        },
+        "features_path": {
+          "bytes": 1917624,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_keep/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 343570,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:07:19+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254__185d2629e39a.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:conch_v1",
+    "last_updated_at": "2026-08-28T22:05:49+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579307/wsi-cache-15579307/gpu_0/batch_52/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.svs",
+    "ext": ".svs",
+    "id": "TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.svs__185d2629e39a",
+    "name": "TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v1": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/patches/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v1": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "e2ffa53ea50c",
+          "duration_s": 26.352232694625854,
+          "error": null,
+          "finished_at": "2026-08-28T22:05:49+0200",
+          "finished_epoch": 1787947549.7705133,
+          "result": "completed",
+          "started_at": "2026-08-28T22:05:23+0200",
+          "started_epoch": 1787947523.4182806
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/patches/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254_patches.h5"
+        },
+        "features_path": {
+          "bytes": 232136,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/features_conch_v1/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 84897,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:05:49+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254__3a57583d2733.json

@@ -1,9 +1,9 @@
 {
   "meta": {},
   "resume": {
-    "last_status": "skipped",
+    "last_status": "completed",
     "last_task": "coords",
-    "last_updated_at": "2026-08-26T07:42:07+0200"
+    "last_updated_at": "2026-08-28T15:40:14+0200"
   },
   "schema_version": 2,
   "slide": {
@@ -15,7 +15,7 @@
     "rel_path": null
   },
   "summary": {
-    "coords": "skipped (already_generated)",
+    "coords": "completed (already_generated)",
     "segmentation": "skipped (already_segmented)"
   },
   "tasks": {
@@ -61,23 +61,73 @@
           "result": "completed",
           "started_at": "2026-08-26T06:26:50+0200",
           "started_epoch": 1787718410.7023425
+        },
+        {
+          "attempt_id": "5fe5cc27ba5c",
+          "duration_s": 0.386843204498291,
+          "error": null,
+          "finished_at": "2026-08-28T15:09:56+0200",
+          "finished_epoch": 1787922596.0229561,
+          "result": "completed",
+          "started_at": "2026-08-28T15:09:55+0200",
+          "started_epoch": 1787922595.636113
+        },
+        {
+          "attempt_id": "c5fec3996213",
+          "duration_s": 0.27552199363708496,
+          "error": null,
+          "finished_at": "2026-08-28T15:17:30+0200",
+          "finished_epoch": 1787923050.661669,
+          "result": "completed",
+          "started_at": "2026-08-28T15:17:30+0200",
+          "started_epoch": 1787923050.386147
+        },
+        {
+          "attempt_id": "2cfa9bf9ea4c",
+          "duration_s": 0.2670290470123291,
+          "error": null,
+          "finished_at": "2026-08-28T15:24:48+0200",
+          "finished_epoch": 1787923488.7866726,
+          "result": "completed",
+          "started_at": "2026-08-28T15:24:48+0200",
+          "started_epoch": 1787923488.5196435
+        },
+        {
+          "attempt_id": "d3387748a9e7",
+          "duration_s": 0.29857444763183594,
+          "error": null,
+          "finished_at": "2026-08-28T15:32:46+0200",
+          "finished_epoch": 1787923966.9811249,
+          "result": "completed",
+          "started_at": "2026-08-28T15:32:46+0200",
+          "started_epoch": 1787923966.6825504
+        },
+        {
+          "attempt_id": "9c87bc68b26e",
+          "duration_s": 0.2758660316467285,
+          "error": null,
+          "finished_at": "2026-08-28T15:40:14+0200",
+          "finished_epoch": 1787924414.3679402,
+          "result": "completed",
+          "started_at": "2026-08-28T15:40:14+0200",
+          "started_epoch": 1787924414.0920742
         }
       ],
-      "message": "Patch coords already generated; skipping.",
+      "message": "Patch coords generated.",
       "outputs": {
         "coords_h5": {
-          "bytes": 347672,
+          "bytes": 17800,
           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_224px_0px_overlap/patches/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254_patches.h5"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254_patches.h5"
         },
         "coords_viz": {
-          "bytes": 53042,
+          "bytes": 49411,
           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_384px_0px_overlap/visualization/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.jpg"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/visualization/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.jpg"
         }
       },
       "reason": "already_generated",
-      "status": "skipped"
+      "status": "completed"
     },
     "segmentation": {
       "_active_attempt_id": null,
@@ -111,5 +161,5 @@
     }
   },
   "trident_version": "0.3.0",
-  "updated_at": "2026-08-26T07:42:07+0200"
+  "updated_at": "2026-08-28T15:40:14+0200"
 }

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254__59807d2b10aa.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-08-28T22:07:30+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579312/wsi-cache-15579312/gpu_0/batch_52/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.svs",
+    "ext": ".svs",
+    "id": "TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.svs__59807d2b10aa",
+    "name": "TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "keep": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 32360,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:keep": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "ecbdd1a896ec",
+          "duration_s": 10.582268714904785,
+          "error": null,
+          "finished_at": "2026-08-28T22:07:30+0200",
+          "finished_epoch": 1787947650.2810032,
+          "result": "completed",
+          "started_at": "2026-08-28T22:07:19+0200",
+          "started_epoch": 1787947639.6987345
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 32360,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254_patches.h5"
+        },
+        "features_path": {
+          "bytes": 1033352,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_keep/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 84897,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:07:30+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254__a097e84867c6.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-08-28T23:21:58+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579313/wsi-cache-15579313/gpu_0/batch_52/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.svs",
+    "ext": ".svs",
+    "id": "TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.svs__a097e84867c6",
+    "name": "TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "keep": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:keep": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "1ed7623c97ec",
+          "duration_s": 4.799532651901245,
+          "error": null,
+          "finished_at": "2026-08-28T23:21:58+0200",
+          "finished_epoch": 1787952118.76227,
+          "result": "completed",
+          "started_at": "2026-08-28T23:21:53+0200",
+          "started_epoch": 1787952113.9627373
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254_patches.h5"
+        },
+        "features_path": {
+          "bytes": 332488,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_keep/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 84897,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:21:58+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254__a30e129f9995.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:conch_v1",
+    "last_updated_at": "2026-08-28T23:14:51+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579308/wsi-cache-15579308/gpu_0/batch_52/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.svs",
+    "ext": ".svs",
+    "id": "TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.svs__a30e129f9995",
+    "name": "TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v1": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 11096,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/patches/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v1": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "964a57d2c75c",
+          "duration_s": 43.31368899345398,
+          "error": null,
+          "finished_at": "2026-08-28T23:14:51+0200",
+          "finished_epoch": 1787951691.9536119,
+          "result": "completed",
+          "started_at": "2026-08-28T23:14:08+0200",
+          "started_epoch": 1787951648.6399229
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 11096,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/patches/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254_patches.h5"
+        },
+        "features_path": {
+          "bytes": 87080,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/features_conch_v1/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 84897,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:14:51+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254__b1cc21ba69ea.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
+    "dimensions": [
+      60002,
+      23466
+    ],
+    "level_count": 3,
+    "mag": 20,
+    "mpp": 0.5015
+  },
+  "resume": {
+    "last_status": "completed",
+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-28T22:56:30+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579309/wsi-cache-15579309/gpu_0/batch_52/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.svs",
+    "ext": ".svs",
+    "id": "TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.svs__b1cc21ba69ea",
+    "name": "TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 32360,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "0e8795e1fd84",
+          "duration_s": 12.273112297058105,
+          "error": null,
+          "finished_at": "2026-08-28T22:48:12+0200",
+          "finished_epoch": 1787950092.1469615,
+          "result": "completed",
+          "started_at": "2026-08-28T22:47:59+0200",
+          "started_epoch": 1787950079.8738492
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 32360,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254_patches.h5"
+        },
+        "features_path": {
+          "bytes": 1033352,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 84897,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "469ff26794ba",
+          "duration_s": 0.07738113403320312,
+          "error": null,
+          "finished_at": "2026-08-28T22:56:30+0200",
+          "finished_epoch": 1787950590.661419,
+          "result": "completed",
+          "started_at": "2026-08-28T22:56:30+0200",
+          "started_epoch": 1787950590.5840378
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 1033352,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.h5"
+        },
+        "slide_features_path": {
+          "bytes": 65488,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/slide_features_titan/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:56:30+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254__d59f02ddb3f6.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
+    "dimensions": [
+      60002,
+      23466
+    ],
+    "level_count": 3,
+    "mag": 20,
+    "mpp": 0.5015
+  },
+  "resume": {
+    "last_status": "completed",
+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-28T21:40:20+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579310/wsi-cache-15579310/gpu_0/batch_52/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.svs",
+    "ext": ".svs",
+    "id": "TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.svs__d59f02ddb3f6",
+    "name": "TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "85641c2b5400",
+          "duration_s": 5.77523136138916,
+          "error": null,
+          "finished_at": "2026-08-28T21:35:37+0200",
+          "finished_epoch": 1787945737.382879,
+          "result": "completed",
+          "started_at": "2026-08-28T21:35:31+0200",
+          "started_epoch": 1787945731.6076477
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254_patches.h5"
+        },
+        "features_path": {
+          "bytes": 332488,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_conch_v15/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 84897,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
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+          "duration_s": 0.03422713279724121,
+          "error": null,
+          "finished_at": "2026-08-28T21:40:20+0200",
+          "finished_epoch": 1787946020.6273005,
+          "result": "completed",
+          "started_at": "2026-08-28T21:40:20+0200",
+          "started_epoch": 1787946020.5930734
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 332488,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_conch_v15/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.h5"
+        },
+        "slide_features_path": {
+          "bytes": 52976,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/slide_features_titan/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T21:40:20+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9__062b95b4a532.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
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+      132375,
+      47141
+    ],
+    "level_count": 4,
+    "mag": 40,
+    "mpp": 0.252
+  },
+  "resume": {
+    "last_status": "completed",
+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-28T21:40:20+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579310/wsi-cache-15579310/gpu_0/batch_52/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.svs__062b95b4a532",
+    "name": "TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "7ff1733f2c6a",
+          "duration_s": 24.69256281852722,
+          "error": null,
+          "finished_at": "2026-08-28T21:36:02+0200",
+          "finished_epoch": 1787945762.0949275,
+          "result": "completed",
+          "started_at": "2026-08-28T21:35:37+0200",
+          "started_epoch": 1787945737.4023647
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9_patches.h5"
+        },
+        "features_path": {
+          "bytes": 255688,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_conch_v15/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 126975,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
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+          "duration_s": 0.030058622360229492,
+          "error": null,
+          "finished_at": "2026-08-28T21:40:20+0200",
+          "finished_epoch": 1787946020.669584,
+          "result": "completed",
+          "started_at": "2026-08-28T21:40:20+0200",
+          "started_epoch": 1787946020.6395254
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 255688,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_conch_v15/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.h5"
+        },
+        "slide_features_path": {
+          "bytes": 52976,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/slide_features_titan/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T21:40:20+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9__2105d592650c.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
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+      132375,
+      47141
+    ],
+    "level_count": 4,
+    "mag": 40,
+    "mpp": 0.252
+  },
+  "resume": {
+    "last_status": "completed",
+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-28T22:56:30+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579309/wsi-cache-15579309/gpu_0/batch_52/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.svs__2105d592650c",
+    "name": "TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 21152,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "6ce9cde25265",
+          "duration_s": 33.43378281593323,
+          "error": null,
+          "finished_at": "2026-08-28T22:48:45+0200",
+          "finished_epoch": 1787950125.6075478,
+          "result": "completed",
+          "started_at": "2026-08-28T22:48:12+0200",
+          "started_epoch": 1787950092.173765
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 21152,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9_patches.h5"
+        },
+        "features_path": {
+          "bytes": 565784,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 126975,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
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+      "attempts": [
+        {
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+          "duration_s": 0.06760191917419434,
+          "error": null,
+          "finished_at": "2026-08-28T22:56:30+0200",
+          "finished_epoch": 1787950590.7485595,
+          "result": "completed",
+          "started_at": "2026-08-28T22:56:30+0200",
+          "started_epoch": 1787950590.6809576
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 565784,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.h5"
+        },
+        "slide_features_path": {
+          "bytes": 55592,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/slide_features_titan/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:56:30+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9__2e1acbaa4366.json

@@ -1,9 +1,9 @@
 {
   "meta": {},
   "resume": {
-    "last_status": "skipped",
+    "last_status": "completed",
     "last_task": "coords",
-    "last_updated_at": "2026-08-26T07:42:07+0200"
+    "last_updated_at": "2026-08-28T15:40:14+0200"
   },
   "schema_version": 2,
   "slide": {
@@ -15,7 +15,7 @@
     "rel_path": null
   },
   "summary": {
-    "coords": "skipped (already_generated)",
+    "coords": "completed (already_generated)",
     "segmentation": "skipped (already_segmented)"
   },
   "tasks": {
@@ -61,23 +61,73 @@
           "result": "completed",
           "started_at": "2026-08-26T06:26:51+0200",
           "started_epoch": 1787718411.1668448
+        },
+        {
+          "attempt_id": "3c0ba04ac66c",
+          "duration_s": 0.2592926025390625,
+          "error": null,
+          "finished_at": "2026-08-28T15:09:56+0200",
+          "finished_epoch": 1787922596.3276966,
+          "result": "completed",
+          "started_at": "2026-08-28T15:09:56+0200",
+          "started_epoch": 1787922596.068404
+        },
+        {
+          "attempt_id": "0ed54c0939d3",
+          "duration_s": 0.19675850868225098,
+          "error": null,
+          "finished_at": "2026-08-28T15:17:30+0200",
+          "finished_epoch": 1787923050.891436,
+          "result": "completed",
+          "started_at": "2026-08-28T15:17:30+0200",
+          "started_epoch": 1787923050.6946776
+        },
+        {
+          "attempt_id": "67c36d8e944c",
+          "duration_s": 0.1700432300567627,
+          "error": null,
+          "finished_at": "2026-08-28T15:24:48+0200",
+          "finished_epoch": 1787923488.9872344,
+          "result": "completed",
+          "started_at": "2026-08-28T15:24:48+0200",
+          "started_epoch": 1787923488.8171911
+        },
+        {
+          "attempt_id": "5d5b2945e679",
+          "duration_s": 0.22095489501953125,
+          "error": null,
+          "finished_at": "2026-08-28T15:32:47+0200",
+          "finished_epoch": 1787923967.2387128,
+          "result": "completed",
+          "started_at": "2026-08-28T15:32:47+0200",
+          "started_epoch": 1787923967.017758
+        },
+        {
+          "attempt_id": "60410ad74632",
+          "duration_s": 0.18022799491882324,
+          "error": null,
+          "finished_at": "2026-08-28T15:40:14+0200",
+          "finished_epoch": 1787924414.58445,
+          "result": "completed",
+          "started_at": "2026-08-28T15:40:14+0200",
+          "started_epoch": 1787924414.404222
         }
       ],
-      "message": "Patch coords already generated; skipping.",
+      "message": "Patch coords generated.",
       "outputs": {
         "coords_h5": {
-          "bytes": 123272,
+          "bytes": 17800,
           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_224px_0px_overlap/patches/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9_patches.h5"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9_patches.h5"
         },
         "coords_viz": {
-          "bytes": 56880,
+          "bytes": 61623,
           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_384px_0px_overlap/visualization/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.jpg"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/visualization/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.jpg"
         }
       },
       "reason": "already_generated",
-      "status": "skipped"
+      "status": "completed"
     },
     "segmentation": {
       "_active_attempt_id": null,
@@ -111,5 +161,5 @@
     }
   },
   "trident_version": "0.3.0",
-  "updated_at": "2026-08-26T07:42:07+0200"
+  "updated_at": "2026-08-28T15:40:14+0200"
 }

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9__348e885938d4.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:conch_v1",
+    "last_updated_at": "2026-08-28T23:15:28+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579308/wsi-cache-15579308/gpu_0/batch_52/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.svs__348e885938d4",
+    "name": "TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v1": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 11112,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/patches/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v1": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "c9b41b573abe",
+          "duration_s": 36.494266510009766,
+          "error": null,
+          "finished_at": "2026-08-28T23:15:28+0200",
+          "finished_epoch": 1787951728.4716382,
+          "result": "completed",
+          "started_at": "2026-08-28T23:14:51+0200",
+          "started_epoch": 1787951691.9773717
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 11112,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/patches/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9_patches.h5"
+        },
+        "features_path": {
+          "bytes": 89144,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/features_conch_v1/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 126975,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:15:28+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9__42cd15415c16.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-08-28T22:08:01+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579312/wsi-cache-15579312/gpu_0/batch_52/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.svs__42cd15415c16",
+    "name": "TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "keep": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 21152,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:keep": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "65807adac4a1",
+          "duration_s": 31.121280908584595,
+          "error": null,
+          "finished_at": "2026-08-28T22:08:01+0200",
+          "finished_epoch": 1787947681.4215655,
+          "result": "completed",
+          "started_at": "2026-08-28T22:07:30+0200",
+          "started_epoch": 1787947650.3002846
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 21152,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9_patches.h5"
+        },
+        "features_path": {
+          "bytes": 565784,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_keep/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 126975,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:08:01+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9__55e77b9e1999.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:conch_v1",
+    "last_updated_at": "2026-08-28T22:06:12+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579307/wsi-cache-15579307/gpu_0/batch_52/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.svs__55e77b9e1999",
+    "name": "TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v1": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/patches/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v1": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "b4a906f578c7",
+          "duration_s": 22.958865642547607,
+          "error": null,
+          "finished_at": "2026-08-28T22:06:12+0200",
+          "finished_epoch": 1787947572.750287,
+          "result": "completed",
+          "started_at": "2026-08-28T22:05:49+0200",
+          "started_epoch": 1787947549.7914214
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/patches/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9_patches.h5"
+        },
+        "features_path": {
+          "bytes": 182984,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/features_conch_v1/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 126975,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:06:12+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9__ac91caeb6fa2.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-08-28T23:22:22+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579313/wsi-cache-15579313/gpu_0/batch_52/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.svs__ac91caeb6fa2",
+    "name": "TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "keep": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:keep": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "d4223c205dce",
+          "duration_s": 23.967167854309082,
+          "error": null,
+          "finished_at": "2026-08-28T23:22:22+0200",
+          "finished_epoch": 1787952142.7470493,
+          "result": "completed",
+          "started_at": "2026-08-28T23:21:58+0200",
+          "started_epoch": 1787952118.7798815
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9_patches.h5"
+        },
+        "features_path": {
+          "bytes": 255688,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_keep/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 126975,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:22:22+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8__368d9e2db0da.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
+    "dimensions": [
+      24940,
+      67806
+    ],
+    "level_count": 4,
+    "mag": 40,
+    "mpp": 0.252
+  },
+  "resume": {
+    "last_status": "completed",
+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-28T21:40:20+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579310/wsi-cache-15579310/gpu_0/batch_52/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.svs__368d9e2db0da",
+    "name": "TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 11128,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "6b26942b2d68",
+          "duration_s": 27.20868420600891,
+          "error": null,
+          "finished_at": "2026-08-28T21:36:29+0200",
+          "finished_epoch": 1787945789.3190255,
+          "result": "completed",
+          "started_at": "2026-08-28T21:36:02+0200",
+          "started_epoch": 1787945762.1103413
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 11128,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8_patches.h5"
+        },
+        "features_path": {
+          "bytes": 130120,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_conch_v15/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 115496,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "51eafb06e620",
+          "duration_s": 0.02965378761291504,
+          "error": null,
+          "finished_at": "2026-08-28T21:40:20+0200",
+          "finished_epoch": 1787946020.711937,
+          "result": "completed",
+          "started_at": "2026-08-28T21:40:20+0200",
+          "started_epoch": 1787946020.6822832
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 130120,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_conch_v15/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.h5"
+        },
+        "slide_features_path": {
+          "bytes": 45696,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/slide_features_titan/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T21:40:20+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8__39231e7091d7.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-08-28T23:22:49+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579313/wsi-cache-15579313/gpu_0/batch_52/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.svs__39231e7091d7",
+    "name": "TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "keep": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 11128,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:keep": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "82eda6962508",
+          "duration_s": 26.790764331817627,
+          "error": null,
+          "finished_at": "2026-08-28T23:22:49+0200",
+          "finished_epoch": 1787952169.556791,
+          "result": "completed",
+          "started_at": "2026-08-28T23:22:22+0200",
+          "started_epoch": 1787952142.7660267
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 11128,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8_patches.h5"
+        },
+        "features_path": {
+          "bytes": 130120,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_keep/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 115496,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T23:22:49+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8__77760852f6cb.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
+    "dimensions": [
+      24940,
+      67806
+    ],
+    "level_count": 4,
+    "mag": 40,
+    "mpp": 0.252
+  },
+  "resume": {
+    "last_status": "completed",
+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-28T22:56:30+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579309/wsi-cache-15579309/gpu_0/batch_52/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.svs__77760852f6cb",
+    "name": "TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "7f62f4f55b14",
+          "duration_s": 36.267043590545654,
+          "error": null,
+          "finished_at": "2026-08-28T22:49:21+0200",
+          "finished_epoch": 1787950161.9041362,
+          "result": "completed",
+          "started_at": "2026-08-28T22:48:45+0200",
+          "started_epoch": 1787950125.6370926
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8_patches.h5"
+        },
+        "features_path": {
+          "bytes": 366280,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 115496,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "ab5231ee55ef",
+          "duration_s": 0.06445145606994629,
+          "error": null,
+          "finished_at": "2026-08-28T22:56:30+0200",
+          "finished_epoch": 1787950590.830065,
+          "result": "completed",
+          "started_at": "2026-08-28T22:56:30+0200",
+          "started_epoch": 1787950590.7656136
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 366280,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.h5"
+        },
+        "slide_features_path": {
+          "bytes": 52976,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/slide_features_titan/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:56:30+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8__b97b6956fcbd.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-08-28T22:08:35+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15579312/wsi-cache-15579312/gpu_0/batch_52/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.svs",
+    "ext": ".svs",
+    "id": "TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.svs__b97b6956fcbd",
+    "name": "TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "keep": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:keep": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "7d9c88005b1b",
+          "duration_s": 34.274189472198486,
+          "error": null,
+          "finished_at": "2026-08-28T22:08:35+0200",
+          "finished_epoch": 1787947715.7156672,
+          "result": "completed",
+          "started_at": "2026-08-28T22:08:01+0200",
+          "started_epoch": 1787947681.4414778
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8_patches.h5"
+        },
+        "features_path": {
+          "bytes": 366280,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_keep/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 115496,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-28T22:08:35+0200"
+}

Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8__dcee8c73c594.json

@@ -1,9 +1,9 @@
 {
   "meta": {},
   "resume": {
-    "last_status": "skipped",
+    "last_status": "completed",
     "last_task": "coords",
-    "last_updated_at": "2026-08-26T07:42:07+0200"
+    "last_updated_at": "2026-08-28T15:40:14+0200"
   },
   "schema_version": 2,
   "slide": {
@@ -15,7 +15,7 @@
     "rel_path": null
   },
   "summary": {
-    "coords": "skipped (already_generated)",
+    "coords": "completed (already_generated)",
     "segmentation": "skipped (already_segmented)"
   },
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@@ -61,23 +61,73 @@
           "result": "completed",
           "started_at": "2026-08-26T06:26:51+0200",
           "started_epoch": 1787718411.5061011
+        },
+        {
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       ],
-      "message": "Patch coords already generated; skipping.",
+      "message": "Patch coords generated.",
       "outputs": {
         "coords_h5": {
-          "bytes": 116072,
+          "bytes": 11128,
           "exists": true,
-          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_224px_0px_overlap/patches/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8_patches.h5"
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8_patches.h5"
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+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/visualization/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.jpg"
         }
       },
       "reason": "already_generated",
-      "status": "skipped"
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     "segmentation": {
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@@ -111,5 +161,5 @@
     }
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   "trident_version": "0.3.0",
-  "updated_at": "2026-08-26T07:42:07+0200"
+  "updated_at": "2026-08-28T15:40:14+0200"
 }

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