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Run-Information/prep/UBC-OCEAN/wsi_states/38349__fd8e3b0480e2.json

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Run-Information/prep/UBC-OCEAN/wsi_states/38366__0845c3571b3d.json

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Run-Information/prep/UBC-OCEAN/wsi_states/38366__232bffbcfc11.json

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+{
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+      "message": "Patch features extracted.",
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_1024px_0px_overlap/patches/38366_patches.h5"
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+      "message": "Tissue already segmented; skipping.",
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+        "contour_jpg": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38366.jpg"
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+}

Run-Information/prep/UBC-OCEAN/wsi_states/38366__243575c90daf.json

@@ -0,0 +1,88 @@
+{
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/38366_patches.h5"
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38366.jpg"
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+}

Run-Information/prep/UBC-OCEAN/wsi_states/38366__5b8d6b74f21c.json

@@ -0,0 +1,127 @@
+{
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_conch_v15/38366.h5"
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+}

Run-Information/prep/UBC-OCEAN/wsi_states/38366__7215556e3e33.json

@@ -0,0 +1,88 @@
+{
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+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/38366_patches.h5"
+        }
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/38366_patches.h5"
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38366.jpg"
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+}

Run-Information/prep/UBC-OCEAN/wsi_states/38366__757ed579e681.json

@@ -0,0 +1,88 @@
+{
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/patches/38366_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
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+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/patches/38366_patches.h5"
+        },
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/features_keep/38366.h5"
+        }
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+      "status": "completed"
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+    "segmentation": {
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+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38366.jpg"
+        }
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+      "reason": "already_segmented",
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+  "updated_at": "2026-10-07T17:11:52+0200"
+}

Run-Information/prep/UBC-OCEAN/wsi_states/38366__94c7e0f44373.json

@@ -0,0 +1,88 @@
+{
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+  "slide": {
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+    "name": "38366",
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+  "tasks": {
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+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/patches/38366_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
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+    "patch_features:keep": {
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+          "started_epoch": 1791409759.9574046
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+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/patches/38366_patches.h5"
+        },
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/features_keep/38366.h5"
+        }
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+    "segmentation": {
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+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38366.jpg"
+        }
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+      "reason": "already_segmented",
+      "status": "skipped"
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+  "trident_version": "0.3.0",
+  "updated_at": "2026-10-07T23:49:51+0200"
+}

Run-Information/prep/UBC-OCEAN/wsi_states/38366__9a577b1cc6a8.json

@@ -0,0 +1,88 @@
+{
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+  "tasks": {
+    "coords": {
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+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/patches/38366_patches.h5"
+        }
+      },
+      "reason": "already_generated",
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+      "message": "Patch features extracted.",
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+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/patches/38366_patches.h5"
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+        }
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+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38366.jpg"
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+  "updated_at": "2026-10-07T18:59:48+0200"
+}

Run-Information/prep/UBC-OCEAN/wsi_states/38366__bc1768a6a8ab.json

@@ -0,0 +1,127 @@
+{
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+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38366.jpg"
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+      "message": "Slide features extracted.",
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_512px_0px_overlap/features_conch_v15/38366.h5"
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+}

Run-Information/prep/UBC-OCEAN/wsi_states/38366__bf77028bc03c.json

@@ -0,0 +1,88 @@
+{
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+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_256px_0px_overlap/patches/38366_patches.h5"
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+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38366.jpg"
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+}

Run-Information/prep/UBC-OCEAN/wsi_states/38366__c4b1760aadf2.json

@@ -0,0 +1,88 @@
+{
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/38366_patches.h5"
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38366.jpg"
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+}

Run-Information/prep/UBC-OCEAN/wsi_states/38366__dfec4a442978.json

@@ -0,0 +1,127 @@
+{
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+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/38366_patches.h5"
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+      "message": "Slide features extracted.",
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+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_conch_v15/38366.h5"
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+}

Run-Information/prep/UBC-OCEAN/wsi_states/38366__e18b359977ec.json

@@ -0,0 +1,127 @@
+{
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+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/38366_patches.h5"
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+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38366.jpg"
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+      "message": "Slide features extracted.",
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Run-Information/prep/UBC-OCEAN/wsi_states/38366__eeef252b2476.json

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Run-Information/prep/UBC-OCEAN/wsi_states/38479__0d568d52925d.json

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Run-Information/prep/UBC-OCEAN/wsi_states/38479__24927c539be5.json

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Run-Information/prep/UBC-OCEAN/wsi_states/38479__34d9655ce3be.json

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Run-Information/prep/UBC-OCEAN/wsi_states/38479__38a2309114e9.json

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+        }
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+          "started_epoch": 1791388367.4541934
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+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 27936,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/38479_patches.h5"
+        },
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+        }
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+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38479.jpg"
+        }
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+      "reason": "already_segmented",
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+}

Run-Information/prep/UBC-OCEAN/wsi_states/38479__5ae8384bb478.json

@@ -0,0 +1,88 @@
+{
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+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/patches/38479_patches.h5"
+        }
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+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/patches/38479_patches.h5"
+        },
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+        }
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38479.jpg"
+        }
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+  "updated_at": "2026-10-07T18:55:29+0200"
+}

Run-Information/prep/UBC-OCEAN/wsi_states/38479__5c58367b417a.json

@@ -0,0 +1,88 @@
+{
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+    "name": "38479",
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+  },
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+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/patches/38479_patches.h5"
+        }
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+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/patches/38479_patches.h5"
+        },
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/features_keep/38479.h5"
+        }
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+    },
+    "segmentation": {
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+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38479.jpg"
+        }
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+      "reason": "already_segmented",
+      "status": "skipped"
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+  "trident_version": "0.3.0",
+  "updated_at": "2026-10-07T17:02:19+0200"
+}

Run-Information/prep/UBC-OCEAN/wsi_states/38479__6a6c4d04d10c.json

@@ -0,0 +1,88 @@
+{
+  "meta": {
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+    "last_updated_at": "2026-10-07T23:39:27+0200"
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+      "outputs": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/patches/38479_patches.h5"
+        }
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+      "message": "Patch features extracted.",
+      "outputs": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/patches/38479_patches.h5"
+        },
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+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/features_keep/38479.h5"
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38479.jpg"
+        }
+      },
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+      "status": "skipped"
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+  "updated_at": "2026-10-07T23:39:27+0200"
+}

Run-Information/prep/UBC-OCEAN/wsi_states/38479__7abadefd6133.json

@@ -0,0 +1,127 @@
+{
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+  },
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/38479_patches.h5"
+        }
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+      "outputs": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/38479_patches.h5"
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+        }
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38479.jpg"
+        }
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+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_conch_v15/38479.h5"
+        },
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+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/slide_features_titan/38479.h5"
+        }
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+      "status": "completed"
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+}

Run-Information/prep/UBC-OCEAN/wsi_states/38479__7f01874cd1e4.json

@@ -0,0 +1,88 @@
+{
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+    "name": "38479",
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+  "tasks": {
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+      "message": "Patch coords already generated; skipping.",
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_1024px_0px_overlap/patches/38479_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
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+    "patch_features:conch_v1": {
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+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_1024px_0px_overlap/patches/38479_patches.h5"
+        },
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_1024px_0px_overlap/features_conch_v1/38479.h5"
+        }
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+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 168467,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38479.jpg"
+        }
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+      "reason": "already_segmented",
+      "status": "skipped"
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+  "updated_at": "2026-10-07T18:40:12+0200"
+}

Run-Information/prep/UBC-OCEAN/wsi_states/38479__7f07e249dd96.json

@@ -0,0 +1,88 @@
+{
+  "meta": {
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+  },
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+  "slide": {
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+    "ext": ".tif",
+    "id": "38479.tif__7f07e249dd96",
+    "name": "38479",
+    "reader_type": "OpenSlideWSI",
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+  },
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+    "patch_features": {
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+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 27936,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/38479_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
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+    "patch_features:keep": {
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+      "message": "Patch features extracted.",
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+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/38479_patches.h5"
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38479.jpg"
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+}

Run-Information/prep/UBC-OCEAN/wsi_states/38479__892480bd5194.json

@@ -0,0 +1,88 @@
+{
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+}

Run-Information/prep/UBC-OCEAN/wsi_states/38479__d450303cfaad.json

@@ -0,0 +1,88 @@
+{
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+}

Run-Information/prep/UBC-OCEAN/wsi_states/38479__f341bb46f536.json

@@ -0,0 +1,127 @@
+{
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+}

Run-Information/prep/UBC-OCEAN/wsi_states/38479__f800c3a02d10.json

@@ -0,0 +1,127 @@
+{
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Run-Information/prep/UBC-OCEAN/wsi_states/38535__0083ee0b396c.json

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+}

Run-Information/prep/UBC-OCEAN/wsi_states/38535__24ae52df24d7.json

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+}

Run-Information/prep/UBC-OCEAN/wsi_states/38535__476adf58e9ef.json

@@ -0,0 +1,88 @@
+{
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+}

Run-Information/prep/UBC-OCEAN/wsi_states/38535__50c13a6b4ab1.json

@@ -0,0 +1,88 @@
+{
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+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_1024px_0px_overlap/patches/38535_patches.h5"
+        }
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+          "started_epoch": 1791391567.369857
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+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_1024px_0px_overlap/patches/38535_patches.h5"
+        },
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+        }
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+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
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+        "contour_jpg": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38535.jpg"
+        }
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+  "updated_at": "2026-10-07T18:46:25+0200"
+}

Run-Information/prep/UBC-OCEAN/wsi_states/38535__5bd0045abd7b.json

@@ -0,0 +1,127 @@
+{
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/38535_patches.h5"
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/38535_patches.h5"
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38535.jpg"
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+          "started_epoch": 1791387464.0269625
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+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_conch_v15/38535.h5"
+        },
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+        }
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+}

Run-Information/prep/UBC-OCEAN/wsi_states/38535__77c21a217d2c.json

@@ -0,0 +1,88 @@
+{
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/38535_patches.h5"
+        }
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+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/38535_patches.h5"
+        },
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_keep/38535.h5"
+        }
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+    "segmentation": {
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+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38535.jpg"
+        }
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+  "updated_at": "2026-10-07T16:38:16+0200"
+}

Run-Information/prep/UBC-OCEAN/wsi_states/38535__834adf08c3cf.json

@@ -0,0 +1,88 @@
+{
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+      "message": "Patch coords already generated; skipping.",
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/patches/38535_patches.h5"
+        }
+      },
+      "reason": "already_generated",
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+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/patches/38535_patches.h5"
+        },
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+        }
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+    },
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+      "attempts": [],
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+      "outputs": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38535.jpg"
+        }
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+  "updated_at": "2026-10-08T00:36:36+0200"
+}

Run-Information/prep/UBC-OCEAN/wsi_states/38535__90b2da779882.json

@@ -0,0 +1,88 @@
+{
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+    "name": "38535",
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+  },
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+    "coords": {
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+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/38535_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
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+    "patch_features:keep": {
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+          "started_epoch": 1791397300.671258
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 25080,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/38535_patches.h5"
+        },
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/features_keep/38535.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38535.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
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+  "trident_version": "0.3.0",
+  "updated_at": "2026-10-07T20:21:52+0200"
+}

Run-Information/prep/UBC-OCEAN/wsi_states/38535__a68a8bdbff29.json

@@ -0,0 +1,88 @@
+{
+  "meta": {
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+  "resume": {
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+  },
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+  "slide": {
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+    "name": "38535",
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+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/patches/38535_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
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+    "patch_features:keep": {
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+          "result": "completed",
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+          "started_epoch": 1791386195.4637086
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 652728,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/patches/38535_patches.h5"
+        },
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/features_keep/38535.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 319873,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38535.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-10-07T17:17:11+0200"
+}

Run-Information/prep/UBC-OCEAN/wsi_states/38535__ae126ceb0ecc.json

@@ -0,0 +1,127 @@
+{
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+    "mag": 20,
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+  },
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+  },
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+  "slide": {
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+    "id": "38535.tif__ae126ceb0ecc",
+    "name": "38535",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/38535_patches.h5"
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38535.jpg"
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+          "started_epoch": 1791397743.0888548
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+      "message": "Slide features extracted.",
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_conch_v15/38535.h5"
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+}

Run-Information/prep/UBC-OCEAN/wsi_states/38535__ce7c8cfa7aa2.json

@@ -0,0 +1,88 @@
+{
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38535.jpg"
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+}

Run-Information/prep/UBC-OCEAN/wsi_states/38535__d4ffb2baaf20.json

@@ -0,0 +1,88 @@
+{
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+}

Run-Information/prep/UBC-OCEAN/wsi_states/38535__dcf269d5baa5.json

@@ -0,0 +1,127 @@
+{
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+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_512px_0px_overlap/features_conch_v15/38535.h5"
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+}

Run-Information/prep/UBC-OCEAN/wsi_states/38535__fd745c55d55a.json

@@ -0,0 +1,88 @@
+{
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38535.jpg"
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+}

Run-Information/prep/UBC-OCEAN/wsi_states/38585__132ca034b180.json

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+{
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+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/38585_patches.h5"
+        }
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+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/38585_patches.h5"
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+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38585.jpg"
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+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
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+      "attempts": [
+        {
+          "attempt_id": "c8aa4b919aa5",
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+          "started_at": "2026-10-07T17:37:38+0200",
+          "started_epoch": 1791387458.8019886
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 2457608,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_conch_v15/38585.h5"
+        },
+        "slide_features_path": {
+          "bytes": 94608,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/slide_features_titan/38585.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
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+  "trident_version": "0.3.0",
+  "updated_at": "2026-10-07T17:37:39+0200"
+}

Run-Information/prep/UBC-OCEAN/wsi_states/38585__15f60ababca1.json

@@ -0,0 +1,88 @@
+{
+  "meta": {
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+  },
+  "tasks": {
+    "coords": {
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+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/patches/38585_patches.h5"
+        }
+      },
+      "reason": "already_generated",
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+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/patches/38585_patches.h5"
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/features_conch_v1/38585.h5"
+        }
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+      "outputs": {
+        "contour_jpg": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38585.jpg"
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+      "status": "skipped"
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+  "updated_at": "2026-10-08T00:43:44+0200"
+}

Run-Information/prep/UBC-OCEAN/wsi_states/38585__34c2e745eb2f.json

@@ -0,0 +1,88 @@
+{
+  "meta": {
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+    "name": "38585",
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+  },
+  "tasks": {
+    "coords": {
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+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_256px_0px_overlap/patches/38585_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
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+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_256px_0px_overlap/patches/38585_patches.h5"
+        },
+        "features_path": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_256px_0px_overlap/features_conch_v1/38585.h5"
+        }
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+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38585.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
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+  "updated_at": "2026-10-08T04:04:12+0200"
+}

Run-Information/prep/UBC-OCEAN/wsi_states/38585__4142961d5de9.json

@@ -0,0 +1,88 @@
+{
+  "meta": {
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+  "slide": {
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+    "name": "38585",
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+  },
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+    "coords": {
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+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/38585_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
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+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/38585_patches.h5"
+        },
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+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/features_keep/38585.h5"
+        }
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+    },
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+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38585.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
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+  "updated_at": "2026-10-07T20:19:27+0200"
+}

Run-Information/prep/UBC-OCEAN/wsi_states/38585__6061f46da976.json

@@ -0,0 +1,127 @@
+{
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+  },
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+    "name": "38585",
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+  },
+  "tasks": {
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+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_512px_0px_overlap/patches/38585_patches.h5"
+        }
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+      "message": "Patch features extracted.",
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_512px_0px_overlap/patches/38585_patches.h5"
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+        }
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+      "message": "Tissue already segmented; skipping.",
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38585.jpg"
+        }
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+      "reason": "already_segmented",
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+          "started_epoch": 1791389374.387182
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_512px_0px_overlap/features_conch_v15/38585.h5"
+        },
+        "slide_features_path": {
+          "bytes": 216952,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_512px_0px_overlap/slide_features_titan/38585.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
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+  "trident_version": "0.3.0",
+  "updated_at": "2026-10-07T18:09:35+0200"
+}

Run-Information/prep/UBC-OCEAN/wsi_states/38585__74c854de1033.json

@@ -0,0 +1,88 @@
+{
+  "meta": {
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+  },
+  "resume": {
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+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-10-07T16:39:20+0200"
+  },
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+  "slide": {
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+    "ext": ".tif",
+    "id": "38585.tif__74c854de1033",
+    "name": "38585",
+    "reader_type": "OpenSlideWSI",
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+  },
+  "summary": {
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+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
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+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
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+          "bytes": 59432,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/38585_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:keep": {
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+          "started_epoch": 1791383952.330456
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 59432,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/38585_patches.h5"
+        },
+        "features_path": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_keep/38585.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 176486,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38585.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-10-07T16:39:20+0200"
+}

Run-Information/prep/UBC-OCEAN/wsi_states/38585__8e7f6593fd16.json

@@ -0,0 +1,127 @@
+{
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+      30320
+    ],
+    "level_count": 1,
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+  },
+  "resume": {
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+    "last_updated_at": "2026-10-07T20:28:58+0200"
+  },
+  "schema_version": 2,
+  "slide": {
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+    "ext": ".tif",
+    "id": "38585.tif__8e7f6593fd16",
+    "name": "38585",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
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+    "patch_features": {
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+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
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+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 59432,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/38585_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
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+      "attempts": [
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+          "error": null,
+          "finished_at": "2026-10-07T20:25:25+0200",
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+          "result": "completed",
+          "started_at": "2026-10-07T20:25:10+0200",
+          "started_epoch": 1791397510.5641344
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 59432,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/38585_patches.h5"
+        },
+        "features_path": {
+          "bytes": 2457608,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_conch_v15/38585.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 176486,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/38585.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "5e7810d2f715",
+          "duration_s": 0.3647313117980957,
+          "error": null,
+          "finished_at": "2026-10-07T20:28:58+0200",
+          "finished_epoch": 1791397738.8501916,
+          "result": "completed",
+          "started_at": "2026-10-07T20:28:58+0200",
+          "started_epoch": 1791397738.4854603
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 2457608,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_conch_v15/38585.h5"
+        },
+        "slide_features_path": {
+          "bytes": 94608,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/slide_features_titan/38585.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-10-07T20:28:58+0200"
+}