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WSI packets for training-free few-shot adaptation
Patch sets and slide packets used by the TTA-OT experiments. Patch vectors are float32 and unit length; every slide has the locked list of patches chosen by the redundancy block.
Layout
packets/new-261103/: BRACS_fine, BRAIN_SUBTYPE_5, BRAIN_SUBTYPE_6, AI4SKIN_fine (and UBC-OCEAN).packets/new-261104-coarse/: BRACS_coarse, AI4SKIN_coarse.packets/new-261105-panda/: PANDA (no block, no cut, every patch of the slide, list length 100; scales 1024px conch_v1, 2048px conch_z, 1024px keep).packets/new-261105-ebr/: EBR-coarse30 (no block, cut 0.95, list length 50; scales native conch_v1, 1024px conch_z, 1024px keep).- each folder:
sets/(patch vectors per slide),slide/(slide packets, one per list lengthP),manifest.json(j= locked list length per dataset and encoder),lists-lock.json. scripts/: the code that builds them (patch_filter,packets, Slurm scripts).
Use
huggingface-cli download thanminh01/WSI_Packets --repo-type dataset --local-dir data/hub
export TTA_OT_PACKETS=data/hub/packets/new-261103
Locked list length J per pair
| pair | J |
|---|---|
| new-261103: AI4SKIN_fine--conch_v1 | 75 |
| new-261103: AI4SKIN_fine--conch_z | 20 |
| new-261103: AI4SKIN_fine--keep | 20 |
| new-261103: BRACS_fine--conch_v1 | 90 |
| new-261103: BRACS_fine--conch_z | 20 |
| new-261103: BRACS_fine--keep | 55 |
| new-261103: BRAIN_SUBTYPE_5--conch_v1 | 20 |
| new-261103: BRAIN_SUBTYPE_5--conch_z | 95 |
| new-261103: BRAIN_SUBTYPE_5--keep | 35 |
| new-261103: BRAIN_SUBTYPE_6--conch_v1 | 20 |
| new-261103: BRAIN_SUBTYPE_6--conch_z | 40 |
| new-261103: BRAIN_SUBTYPE_6--keep | 20 |
| new-261103: UBC-OCEAN--conch_v1 | 25 |
| new-261103: UBC-OCEAN--conch_z | 20 |
| new-261103: UBC-OCEAN--keep | 90 |
| new-261104-coarse: AI4SKIN_coarse--conch_v1 | 75 |
| new-261104-coarse: AI4SKIN_coarse--conch_z | 20 |
| new-261104-coarse: AI4SKIN_coarse--keep | 35 |
| new-261104-coarse: BRACS_coarse--conch_v1 | 40 |
| new-261104-coarse: BRACS_coarse--conch_z | 20 |
| new-261104-coarse: BRACS_coarse--keep | 100 |
| new-261104-coarse: EBR-coarse30--conch_v1 | 100 |
| new-261104-coarse: EBR-coarse30--conch_z | 95 |
| new-261104-coarse: EBR-coarse30--keep | 90 |
| new-261104-coarse: PANDA--conch_v1 | 100 |
| new-261104-coarse: PANDA--conch_z | 100 |
| new-261104-coarse: PANDA--keep | 100 |
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