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  1. .gitattributes +65 -0
  2. README.md +3 -0
  3. figs/results/luca_split01_metrics_summary_latent10.csv +8 -0
  4. figs/results/luca_split01_metrics_summary_latent128.csv +8 -0
  5. figs/results/luca_split01_metrics_summary_latent2048.csv +8 -0
  6. figs/results/luca_split01_metrics_summary_latent32.csv +8 -0
  7. figs/results/luca_split01_metrics_summary_latent512.csv +8 -0
  8. figs/results/luca_split02_metrics_summary_latent10.csv +8 -0
  9. figs/results/luca_split02_metrics_summary_latent128.csv +8 -0
  10. figs/results/luca_split02_metrics_summary_latent2048.csv +8 -0
  11. figs/results/luca_split02_metrics_summary_latent32.csv +8 -0
  12. figs/results/luca_split02_metrics_summary_latent512.csv +8 -0
  13. figs/results/luca_split03_metrics_summary_latent10.csv +8 -0
  14. figs/results/luca_split03_metrics_summary_latent128.csv +8 -0
  15. figs/results/luca_split03_metrics_summary_latent2048.csv +8 -0
  16. figs/results/luca_split03_metrics_summary_latent32.csv +8 -0
  17. figs/results/luca_split03_metrics_summary_latent512.csv +8 -0
  18. figs/results/pbmc_split01_metrics_summary_latent10.csv +8 -0
  19. figs/results/pbmc_split01_metrics_summary_latent128.csv +8 -0
  20. figs/results/pbmc_split01_metrics_summary_latent2048.csv +8 -0
  21. figs/results/pbmc_split01_metrics_summary_latent32.csv +8 -0
  22. figs/results/pbmc_split01_metrics_summary_latent512.csv +8 -0
  23. figs/results/pbmc_split02_metrics_summary_latent10.csv +8 -0
  24. figs/results/pbmc_split02_metrics_summary_latent128.csv +8 -0
  25. figs/results/pbmc_split02_metrics_summary_latent2048.csv +8 -0
  26. figs/results/pbmc_split02_metrics_summary_latent32.csv +8 -0
  27. figs/results/pbmc_split02_metrics_summary_latent512.csv +8 -0
  28. figs/results/pbmc_split03_metrics_summary_latent10.csv +8 -0
  29. figs/results/pbmc_split03_metrics_summary_latent128.csv +8 -0
  30. figs/results/pbmc_split03_metrics_summary_latent2048.csv +8 -0
  31. figs/results/pbmc_split03_metrics_summary_latent32.csv +8 -0
  32. figs/results/pbmc_split03_metrics_summary_latent512.csv +8 -0
  33. figs/results/tahoe_split01_metrics_summary_latent10.csv +8 -0
  34. figs/results/tahoe_split01_metrics_summary_latent128.csv +8 -0
  35. figs/results/tahoe_split01_metrics_summary_latent2048.csv +8 -0
  36. figs/results/tahoe_split01_metrics_summary_latent32.csv +8 -0
  37. figs/results/tahoe_split01_metrics_summary_latent512.csv +8 -0
  38. figs/results/tahoe_split02_metrics_summary_latent10.csv +8 -0
  39. figs/results/tahoe_split02_metrics_summary_latent128.csv +8 -0
  40. figs/results/tahoe_split02_metrics_summary_latent2048.csv +8 -0
  41. figs/results/tahoe_split02_metrics_summary_latent32.csv +8 -0
  42. figs/results/tahoe_split02_metrics_summary_latent512.csv +8 -0
  43. figs/results/tahoe_split03_metrics_summary_latent10.csv +8 -0
  44. figs/results/tahoe_split03_metrics_summary_latent128.csv +8 -0
  45. figs/results/tahoe_split03_metrics_summary_latent2048.csv +8 -0
  46. figs/results/tahoe_split03_metrics_summary_latent32.csv +8 -0
  47. figs/results/tahoe_split03_metrics_summary_latent512.csv +8 -0
  48. luca_in_adata.h5ad +3 -0
  49. luca_recons_umap.pkl +3 -0
  50. panelf_obs.pkl +3 -0
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README.md ADDED
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1
+ ---
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+ license: mit
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+ ---
figs/results/luca_split01_metrics_summary_latent10.csv ADDED
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figs/results/luca_split01_metrics_summary_latent32.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
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figs/results/luca_split01_metrics_summary_latent512.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
2
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figs/results/luca_split02_metrics_summary_latent10.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
2
+ AE,0.8406762889562509,-0.12862866279487178,-0.10141495856230404,-5.078629637142136,0.5186614912790336,0.4915294950470188,0.8519962465253492,0.8581667045644689,0.8625371567264855,0.8342051927258262,0.4421479481505625,-0.16004507363563797,0.03872340425531916,0.47159181121322846,0.41243969569500843,0.44287728766600293,0.3743048181600979,0.8326595744680853,0.03474498703144488,0.14536570970958415,0.6292011539141337,0.289318446633242,10.0,4.0,1024.0
3
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4
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figs/results/luca_split02_metrics_summary_latent128.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
2
+ AE,0.8930426564736244,-0.10604613564102564,-0.10017081920595644,-2.253766694640106,0.7392362580919049,0.7158180064575267,0.8800388576764607,0.8856960715677622,0.920677775245237,0.8852288208353596,0.4998370976137113,-0.15352589316385806,0.03957446808510638,0.47604309436347747,0.42835934243014306,0.5944442252318064,0.42060330019645303,0.8329787234042553,0.050407303807636084,0.18545988151801274,0.7726061013009813,0.36057313981252004,128.0,4.0,1024.0
3
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4
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figs/results/luca_split02_metrics_summary_latent2048.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
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figs/results/luca_split02_metrics_summary_latent32.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
2
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8
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figs/results/luca_split02_metrics_summary_latent512.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
2
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3
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figs/results/luca_split03_metrics_summary_latent10.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
2
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3
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figs/results/luca_split03_metrics_summary_latent128.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
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figs/results/luca_split03_metrics_summary_latent2048.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
2
+ AE,0.9827075093023239,-0.024362873487741937,-0.07316559240462948,-0.21388965982589947,0.9752071776251229,0.9694333826402974,0.9742034957269068,0.960966217708252,0.9632925441732202,0.9402416058329779,0.7502222945735045,-0.055829934982035034,0.019603960396039607,0.5004202901048863,0.5252230102140761,0.9595346970761076,0.7251944811571432,0.6616831683168318,0.1422553764993047,0.47728804725500684,0.9682845638153401,0.726558398286962,2048.0,1.0,4096.0
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8
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figs/results/luca_split03_metrics_summary_latent32.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
2
+ AE,0.9398931168740795,-0.10509880800000002,-0.1106952606685942,-0.7769598836946081,0.6837880706957118,0.6524645037955072,0.8736223363947905,0.8819922509523787,0.9374431145008056,0.9092571372371794,0.5641261348058657,-0.1371401030519586,0.028811881188118813,0.4952821611089909,0.5017584701334449,0.8632645467494396,0.6028943149740078,0.6320792079207921,0.10827850015398031,0.2664986886890454,0.8221524104158929,0.42098014423516905,32.0,3.0,2048.0
3
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4
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figs/results/luca_split03_metrics_summary_latent512.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
2
+ AE,0.9695930869348588,-0.056611648935483865,-0.1012881976267994,-0.38160917586303694,0.9051994472939129,0.8909476306276749,0.9363142811461955,0.9344698339027807,0.9616692057005013,0.9292074647259073,0.6304275093468391,-0.08053216973611922,0.032475247524752476,0.49645744803103997,0.5196082756283348,0.938715433820765,0.6752513357405727,0.6152475247524752,0.14824154013965987,0.34489377998021237,0.9288919466607114,0.5401345800165882,512.0,3.0,4096.0
3
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4
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figs/results/pbmc_split01_metrics_summary_latent10.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
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figs/results/pbmc_split01_metrics_summary_latent128.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
2
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8
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figs/results/pbmc_split01_metrics_summary_latent2048.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
2
+ AE,0.9202727934014027,-0.044649992537058904,-0.1660615413716545,-0.9041875836936656,0.9203231167431436,0.9095025327488069,0.9783833322451019,0.9565569165234655,0.9090400605998934,0.8931925921211931,0.6096625759903956,-0.08458942988108581,0.0004986737400530505,0.03910261475855723,0.15612079637382234,0.5139711315761911,0.45519887916848395,0.1117994083937453,0.12114295523016212,0.3951480681083951,0.8794886975421627,0.702203408721614,2048.0,1.0,4096.0
3
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figs/results/pbmc_split01_metrics_summary_latent32.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
2
+ AE,0.8498272830268362,-0.14323782485067169,-0.184656021322129,-2.816860760509446,0.4898324358612633,0.43486575635600544,0.8547963781205,0.8596118996506497,0.8714682478500033,0.8623101416056961,0.3643040035618941,-0.11969656993714732,0.00045977011494252866,-0.02206360141611432,0.099549258154587,0.2835075287259742,0.2202249268524388,0.18514237854044918,0.059344380183646024,0.16051808181285124,0.6011632563022484,0.32936743180001216,32.0,4.0,4096.0
3
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4
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figs/results/pbmc_split01_metrics_summary_latent512.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
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figs/results/pbmc_split02_metrics_summary_latent10.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
2
+ AE,0.8834846192696397,-0.1350896266100805,-0.21724192172813683,-1.5409859205610923,0.5019778786972623,0.47131511966972767,0.8451412318435878,0.843121132334875,0.8923669067891542,0.8402028685978079,0.3494933330381402,-0.20109724270724255,0.0007565953210552514,0.05733397577351836,0.18575952399109508,0.4339381725117451,0.31283969206251694,0.17729716276754603,0.05854353492647998,0.19046595440523081,0.6194792387159019,0.3423222737381506,10.0,4.0,2048.0
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8
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figs/results/pbmc_split02_metrics_summary_latent128.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
2
+ AE,0.9193265736491053,-0.09649754385071606,-0.20099958942735535,-0.6784910992085674,0.7660140955973402,0.7456366518774336,0.8941416968018827,0.8914305207115716,0.9113677658660099,0.864515745774325,0.3701022195445671,-0.13428489470555122,0.0008920570264765783,0.06555582938898455,0.2225796189372876,0.6576425430751978,0.4020912115451948,0.1304969450101833,0.0745028279703222,0.2371223799671616,0.7994965899617659,0.4262672826245895,128.0,4.0,4096.0
3
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figs/results/pbmc_split02_metrics_summary_latent2048.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
2
+ AE,0.9690554396314224,-0.027200968408470423,-0.10950218843445926,-0.2824643504341122,0.971567753311652,0.9674716770784746,0.983573196242643,0.9594446475899766,0.9201613796266221,0.882061169797522,0.6186275371826988,-0.08433593215669345,0.0005923344947735192,0.052680593435210185,0.27099129257760785,0.8909122419513916,0.6509115208067124,0.12782976605276258,0.10988725228744549,0.42541111997151887,0.9590960019402217,0.7359300930360414,2048.0,1.0,4096.0
3
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figs/results/pbmc_split02_metrics_summary_latent32.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
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figs/results/pbmc_split02_metrics_summary_latent512.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
2
+ AE,0.9376099767240978,-0.06912010066118307,-0.17001168359947566,-0.4483112226899272,0.8742017868548614,0.8609581184810049,0.9307119735969805,0.9170442287833394,0.9166009785153816,0.8710704929194144,0.46088681786426555,-0.10402741627433901,0.000657043305126929,0.07317675249495775,0.22411815362559268,0.7505040901998729,0.45670945228178556,0.09806869089099055,0.07565415907808129,0.26647955900936837,0.8692099427622698,0.498537290224064,512.0,3.0,4096.0
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figs/results/pbmc_split03_metrics_summary_latent10.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
2
+ AE,0.9168106265963873,-0.12726234203835615,-0.17407908910676473,-1.124714977756597,0.5254904303948789,0.4930751895115233,0.8583654964961798,0.8575279195271268,0.9267007384611674,0.8727950697414844,0.36399557054633797,-0.19302161299282522,0.0008984374999999999,0.06601434680942987,0.2591562893326294,0.6840984801580161,0.469675946807272,0.19568080357142859,0.06938607078489216,0.2257804935954273,0.6639169289267453,0.3869199194918701,10.0,4.0,4096.0
3
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4
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figs/results/pbmc_split03_metrics_summary_latent128.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
2
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figs/results/pbmc_split03_metrics_summary_latent2048.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
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figs/results/pbmc_split03_metrics_summary_latent32.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
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figs/results/pbmc_split03_metrics_summary_latent512.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cytokine_pearson_average,cytokine_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
2
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figs/results/tahoe_split01_metrics_summary_latent10.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
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figs/results/tahoe_split01_metrics_summary_latent128.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
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figs/results/tahoe_split01_metrics_summary_latent2048.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
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figs/results/tahoe_split01_metrics_summary_latent32.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
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figs/results/tahoe_split01_metrics_summary_latent512.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
2
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figs/results/tahoe_split02_metrics_summary_latent10.csv ADDED
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1
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figs/results/tahoe_split02_metrics_summary_latent128.csv ADDED
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1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
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figs/results/tahoe_split02_metrics_summary_latent2048.csv ADDED
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1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
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figs/results/tahoe_split02_metrics_summary_latent32.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
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+ PCA,0.8529726434117986,-0.05891369593319403,-0.009246272689994143,-1.2327945773965394,0.6344648083114157,0.6047336855779177,0.8901547526654904,0.8920461186130267,0.7282846237071547,-0.10133310478450387,0.0,0.35822605520156053,0.18903692424328095,0.43832181173219065,0.14881510878256302,0.07086124401913876,0.015189257739622207,0.1350124346861482,0.6031739497137103,0.23121982514921152,32.0,,
figs/results/tahoe_split02_metrics_summary_latent512.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
2
+ AE,0.9979162951822304,-0.0031966221964871196,-0.014790258157601844,-0.00661072322806703,0.9923328851950729,0.990412629871915,0.9958340616605644,0.967568766143886,0.8719844525498819,-0.032654661259894115,0.0,0.33745332834469055,0.24482619246630183,0.9812415017529216,0.5421049427419485,0.15241626794258373,0.09558266788626991,0.46617792843391564,0.9955075370555714,0.654860757300998,512.0,4.0,4096.0
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+ scVI,0.9557689888974263,-0.03425202696018735,-0.009413461288536273,-0.6163639475750534,0.757149800772201,0.7241248847551401,0.9527996136796009,0.9324693369994421,0.7792630477695291,-0.058991779010582765,0.0,0.6644511568643672,0.3700152907076569,0.6633042796793063,0.644462403675457,0.24509569377990428,0.7144282724885038,0.6703635767070016,0.8181907144536873,0.7080987856342411,512.0,1.0,4096.0
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+ mlscVI,0.9526419223611193,-0.03593697817096019,-0.009439578382883848,-0.8461370654458903,0.7649689581837537,0.7293291967564272,0.9599442487053976,0.9436032365707635,0.7629581617211829,-0.07033766849526626,0.0,0.672849878803819,0.36904539156610666,0.6178439344996425,0.6282875749346004,0.24906698564593302,0.7204991967978632,0.6641506033544262,0.8111524476552456,0.6796742740595013,512.0,1.0,4096.0
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+ PCA,0.9856138085554775,-0.02002822921246593,-2.94321948511219e-07,-6.903486038834017e-05,0.9293755966080154,0.9190256527370156,0.9694676648892212,0.9600811388690517,0.8524638773340457,-0.04017993111303801,7.177033492822967e-05,0.3623842240638484,0.19962270295316414,0.8587056586596209,0.2748676441432341,0.15035885167464116,0.04728931652510189,0.24829328874671766,0.9290469813176834,0.4011591474169864,512.0,,
figs/results/tahoe_split03_metrics_summary_latent10.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
2
+ AE,0.9772314360723809,-0.05034216628403755,-0.010795579993570845,-0.24566510069303493,0.6850765999608446,0.6459252277213254,0.9135562745496859,0.9034896452651859,0.7680893543455513,-0.07839241715120447,0.000145985401459854,0.34828594499649546,0.18263178030998609,0.875593410012112,0.31973798381219604,0.2671532846715328,0.008945935622892918,0.1973736177189919,0.8207923506788846,0.33506649912660047,10.0,4.0,4096.0
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+ olAE,0.9778686405067712,-0.050467869147887326,-0.277566637636852,-0.010965061864109418,0.6836412289197052,0.6445020344305527,0.9055502823268111,0.8614005089010642,0.7755389056031147,-0.07859489570167016,0.0,0.3545568858582075,0.181517416161496,0.8784800691880991,0.42273511591592194,0.15304136253041362,0.000612905746645774,0.1276699395339103,0.8246816643818149,0.3506497308025114,10.0,4.0,4096.0
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+ mlAE,0.9771560115713469,-0.05072257057981221,-0.011057508748226596,-0.29681521492933954,0.685517935706904,0.6462156882919328,0.9098524266889583,0.8742610781496987,0.7790111282389629,-0.07695687772704825,0.0,0.3080813689499113,0.12111736094718203,0.875086394421082,0.39844528263066176,0.18318518518518517,0.05550447943814307,0.25218482343172605,0.8176336066036634,0.3338148335351772,10.0,3.0,4096.0
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+ nlscVI,0.9541659170473126,-0.0576487432230047,-0.0249230342879571,-0.8946121795600992,0.45345267506645176,0.4133472750316808,0.8741923240050009,0.8557826704654916,0.7067715207161617,-0.09732775706921709,0.00038929440389294404,0.38004856406138426,0.225223105871631,0.6661655916226021,0.3054426515483964,0.22549878345498786,0.2835819803778346,0.24720143711972667,0.640106567790405,0.34648714076290466,10.0,4.0,4096.0
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+ scVI,0.9593173117145126,-0.05629769373239436,-0.020096315353369695,-0.805150591305875,0.45721576042567474,0.4316783706681559,0.8662223065317857,0.8175881277356655,0.6892979952535321,-0.08289620675169224,0.0,0.4399962417100843,0.261102574503993,0.7083892199804378,0.36926824618533116,0.19094890510948906,0.3042142959932237,0.1405764701496936,0.6862294883006399,0.35196714100011844,10.0,4.0,4096.0
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+ mlscVI,0.9482712982126245,-0.05719875963849765,-0.019817744709346802,-1.0974994318477653,0.45779110985495775,0.4297480644045661,0.8828389604296492,0.8542728593060952,0.6848435159184278,-0.08511250503363203,0.0,0.44909848326056895,0.2575555671067803,0.603195086739158,0.3067910726087668,0.17978102189781023,0.32428770940004104,0.15777360097590754,0.6246681397375639,0.2803785643471054,10.0,3.0,4096.0
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+ PCA,0.6993124841944126,-0.06752931468526747,-0.014243320419859757,-4.877477698232481,0.5197120000177634,0.4914417175405052,0.829338117076723,0.8298024253861485,0.7169756454481535,-0.12069037238586003,0.0,0.36326287371644334,0.18311851490134226,0.3129375384061681,0.1135004979332947,0.03347931873479319,0.008742110715764286,0.11549706214122066,0.45537551680020827,0.19862415247398044,10.0,,
figs/results/tahoe_split03_metrics_summary_latent128.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
2
+ AE,0.9815323096765599,-0.015265311671361503,-0.026877179331380032,-0.03786559773207961,0.9481316289296101,0.9403408387582476,0.9798010522091585,0.9533794996101177,0.8113877103467382,-0.06787898359982175,0.0,0.2567570143594698,0.1573234686502668,0.8588685107980615,0.2990764640711423,0.08072992700729929,0.016426202919054438,0.2767212508255111,0.9695051702123032,0.4557865380134417,128.0,4.0,4096.0
3
+ olAE,0.9952580398517036,-0.011158155694600937,-0.011905440186669045,-0.015441715937145132,0.9598005765866354,0.9538637396085726,0.9888022500037345,0.939574097972663,0.8557228503438734,-0.03702283392623124,0.0,0.3275805204095379,0.14555072537287428,0.9645915910086317,0.4478040621041447,0.09549878345498783,0.05189148435206773,0.14855807031552343,0.9813524904405957,0.47448260608345344,128.0,4.0,4096.0
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5
+ nlscVI,0.9587383095367413,-0.051243115497652585,-0.012178607934407998,-0.6042615170686048,0.6220498514147204,0.5742041140873849,0.8983859156376471,0.8861897231456632,0.7774581377986504,-0.06956387541160507,7.2992700729927e-05,0.3731642023613875,0.2441940957991508,0.7080618910448281,0.3959547365110163,0.21963503649635038,0.29112811376986186,0.3490122136664729,0.6945478133673725,0.4454277905707385,128.0,3.0,4096.0
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+ scVI,0.9602107941544672,-0.04893735002816901,-0.013685990843966416,-0.6814325813621308,0.6173332307358282,0.576464741929893,0.9047229250752155,0.856422157056302,0.7396872852241845,-0.07706821679967416,0.0,0.5645214839236286,0.33373618157754886,0.7256190456392976,0.5166786416918822,0.22274939172749392,0.6200174151256498,0.4552863559572292,0.7506018241937934,0.5641638714082693,128.0,4.0,4096.0
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+ mlscVI,0.9468599868492341,-0.05073783684507043,-0.014063683660098907,-1.0684115050338414,0.5860832176108393,0.5411143412447567,0.9205334378343725,0.8930878816496246,0.734665236593487,-0.07560413061798434,0.0,0.5733170601138876,0.3324962480077964,0.5973116960389816,0.4678334621065015,0.18545012165450123,0.6269853299311294,0.45321990028791,0.6762390678392874,0.49646993197345174,128.0,3.0,4096.0
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+ PCA,0.9502808036229726,-0.043767004730013784,-4.613109846607619e-06,-0.0003158776033666583,0.7922224173594631,0.7751774231637879,0.9312099572737078,0.9320625019441054,0.793020394278369,-0.058923701122366945,0.0,0.36824840854369045,0.19562614074750784,0.6767388206771674,0.20787805165398268,0.16092457420924577,0.02634875621219941,0.1737961329628342,0.7854542793768955,0.28878485746803223,128.0,,
figs/results/tahoe_split03_metrics_summary_latent2048.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,cellcycle_proportion_same_phase,coexpression_pearson_average,coexpression_spearman_average,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,distributional_r2_score,hidden,latentsize,layers,pathway_pearson_average,pathway_spearman_average,rev_cellcycle_proportion_mean_diff,rev_distributional_energy_distance,rev_distributional_mmd_rbf,rev_distributional_mse
2
+ AE,0.8778901316068999,0.9982619670008426,0.9637710311740033,0.2773722627737227,0.1292788467100118,0.5576439031082179,0.9980888102913962,0.7388419582340098,0.0,0.3459652308883431,0.23731513241172,0.9719404915037341,0.5765149665862226,0.9972589649784733,4096.0,2048.0,2.0,0.9984213671182902,0.9973798695711269,-0.03233038938092274,-0.021010804283581097,-0.004180328862006201,-0.0011177109667605634
3
+ olAE,0.8935496833489235,0.9988259265945058,0.8949196805948711,0.21333333333333335,0.35390547263783806,0.5360710187619104,0.9981548087943388,0.7640548113231292,0.0,0.5851235042988779,0.339379279285069,0.96219438772949,0.7954019453588201,0.9971726515763243,4096.0,2048.0,1.0,0.9984227720870934,0.9981485120339213,-0.025128483509421765,-0.007562801549519079,-0.01861783305864126,-0.0007248812259389672
4
+ mlAE,0.8847630973331251,0.9979537028036417,0.8844020307091498,0.14661800486618004,0.4319456840652456,0.6748729573206532,0.9975829318713615,0.780864502064771,0.0,0.343851714894354,0.25119773315544486,0.9651015279505597,0.7054280214359158,0.9974681893144974,2048.0,2048.0,1.0,0.9961065261080632,0.9952278836441181,-0.027595539553727157,-0.02462197027606167,-0.0025468937614515864,-0.0010921387292723004
5
+ nlscVI,0.8466489720886505,0.9773481560166397,0.9691869735154244,0.22737226277372263,0.39909538147448653,0.5046556294294009,0.9417105902853513,0.6415143552979802,0.00019464720194647202,0.3928355627903349,0.25453116737915543,0.8947622173120332,0.4527806800987159,0.9875447705318111,4096.0,2048.0,1.0,0.9272738324655868,0.912320747085673,-0.03711861064097938,-0.05771905494735949,-0.00997163062001347,-0.016518257687793424
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+ scVI,0.8421743431543246,0.9825598316949815,0.9460787757877823,0.22160583941605838,0.7234793643881555,0.70763576245573,0.9424153601715484,0.8120896888937903,0.0,0.6036077704808747,0.3894097426707883,0.7954130483468858,0.7858753861099722,0.9763116980662369,4096.0,2048.0,1.0,0.9281691491672357,0.9141821699425364,-0.04288126063493145,-0.16305675235205244,-0.010521928509156356,-0.013714803257042253
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+ mlscVI,0.8430903650396728,0.9825307704111129,0.9499246645722559,,,,,,,,,,,0.9674114850765103,4096.0,2048.0,1.0,0.9103484358137991,0.893598241018904,-0.04454002531488563,-0.29846102654036927,-0.010612854167336564,-0.015869296873239437
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+ PCA,0.9494752463938709,0.9996705476511997,0.9519336088671586,0.2108272506082725,0.3024148913846014,0.5984869011580752,0.9987765257619718,0.7642536694621933,0.000340632603406326,0.3768456068820082,0.2876422097206945,0.9981960551828283,0.7092087203690273,0.9996358622834358,,2048.0,,0.999741596243312,0.9995654004240747,-0.008710092891791105,-1.271989026962964e-06,-1.743704939796197e-10,-0.0005713570356980675
figs/results/tahoe_split03_metrics_summary_latent32.csv ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ ,distributional_r2_score,rev_distributional_mse,rev_distributional_mmd_rbf,rev_distributional_energy_distance,pathway_pearson_average,pathway_spearman_average,coexpression_pearson_average,coexpression_spearman_average,cellcycle_proportion_same_phase,rev_cellcycle_proportion_mean_diff,deg_wilcoxon_true_deg_dice_100,deg_wilcoxon_true_deg_pearson,deg_wilcoxon_true_deg_spearman,deg_wilcoxon_true_mean_genediff_pearson,deg_wilcoxon_true_mean_genediff_spearman,deg_wilcoxon_pred_deg_dice_100,deg_wilcoxon_pred_deg_pearson,deg_wilcoxon_pred_deg_spearman,deg_wilcoxon_pred_mean_genediff_pearson,deg_wilcoxon_pred_mean_genediff_spearman,latentsize,layers,hidden
2
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