Datasets:

theislab
/

ReconEval

License:

Dataset card Data Studio Files Files and versions

175 GB

1 contributor

History: 6 commits

XiaotongF's picture

Add files using upload-large-folder tool

e5a9ccd verified 9 days ago

figs
Add files using upload-large-folder tool about 2 months ago
tahoe_split01_metadata.zarr
clean up 2 months ago
weights
Add files using upload-large-folder tool 9 days ago
.gitattributes

2.94 kB
Add files using upload-large-folder tool about 2 months ago
README.md

21 Bytes
clean up 2 months ago
cytokine_act_merged.csv

6.53 MB
Add files using upload-large-folder tool about 2 months ago
luca_demo.h5ad

2.33 MB
xet

Add files using upload-large-folder tool about 2 months ago
luca_in_adata.h5ad

947 MB
xet

clean up 2 months ago
luca_recons_umap.pkl
Detected Pickle imports (15)
- "pandas.core.frame.DataFrame",
- "numpy._core.multiarray._reconstruct",
- "pandas.core.arrays.categorical.Categorical",
- "builtins.slice",
- "pandas._libs.internals._unpickle_block",
- "pandas.core.indexes.base._new_Index",
- "collections.OrderedDict",
- "numpy.dtype",
- "pandas.core.internals.managers.BlockManager",
- "pandas.core.dtypes.dtypes.CategoricalDtype",
- "anndata._core.anndata.AnnData",
- "anndata._core.file_backing.AnnDataFileManager",
- "pandas._libs.arrays.__pyx_unpickle_NDArrayBacked",
- "numpy.ndarray",
- "pandas.core.indexes.base.Index"
How to fix it?
2.14 GB
xet

clean up 2 months ago
panelf_obs.pkl
Detected Pickle imports (12)
- "pandas._libs.arrays.__pyx_unpickle_NDArrayBacked",
- "pandas._libs.internals._unpickle_block",
- "numpy.ndarray",
- "numpy.dtype",
- "numpy._core.multiarray._reconstruct",
- "pandas.core.arrays.categorical.Categorical",
- "pandas.core.indexes.base.Index",
- "pandas.core.indexes.base._new_Index",
- "pandas.core.frame.DataFrame",
- "builtins.slice",
- "pandas.core.dtypes.dtypes.CategoricalDtype",
- "pandas.core.internals.managers.BlockManager"
How to fix it?
819 kB
xet

clean up 2 months ago
panelf_umaps.pkl
Detected Pickle imports (17)
- "anndata._core.anndata.AnnData",
- "pandas._libs.internals._unpickle_block",
- "pandas.core.internals.managers.BlockManager",
- "scipy.sparse._csr.csr_matrix",
- "pandas.core.frame.DataFrame",
- "pandas.core.indexes.base._new_Index",
- "pandas.core.indexes.base.Index",
- "pandas._libs.arrays.__pyx_unpickle_NDArrayBacked",
- "collections.OrderedDict",
- "numpy.dtype",
- "pandas.core.dtypes.dtypes.CategoricalDtype",
- "numpy.ndarray",
- "numpy._core.multiarray._reconstruct",
- "numpy._core.multiarray.scalar",
- "pandas.core.arrays.categorical.Categorical",
- "anndata._core.file_backing.AnnDataFileManager",
- "builtins.slice"
How to fix it?
311 MB
xet

clean up 2 months ago
pbmc_plot.h5ad

3.56 MB
xet

Add files using upload-large-folder tool about 2 months ago
pbmc_plot_dict.pkl
Detected Pickle imports (3)
- "numpy.ndarray",
- "numpy._core.multiarray._reconstruct",
- "numpy.dtype"
What is a pickle import?
262 kB
xet

Add files using upload-large-folder tool about 2 months ago
pbmc_recons_umap.pkl
Detected Pickle imports (15)
- "numpy.ndarray",
- "numpy._core.multiarray._reconstruct",
- "pandas.core.internals.managers.BlockManager",
- "pandas.core.dtypes.dtypes.CategoricalDtype",
- "pandas._libs.internals._unpickle_block",
- "pandas.core.arrays.categorical.Categorical",
- "pandas._libs.arrays.__pyx_unpickle_NDArrayBacked",
- "pandas.core.indexes.base._new_Index",
- "pandas.core.frame.DataFrame",
- "pandas.core.indexes.base.Index",
- "numpy.dtype",
- "anndata._core.file_backing.AnnDataFileManager",
- "builtins.slice",
- "collections.OrderedDict",
- "anndata._core.anndata.AnnData"
How to fix it?
2.53 GB
xet

clean up 2 months ago
regev_lab_cell_cycle_genes.txt

556 Bytes
clean up 2 months ago
st_umaps_ae2048.pkl
10.3 GB
xet

clean up 2 months ago
st_umaps_pca128.pkl
7.62 GB
xet

clean up 2 months ago
st_umaps_vae32.pkl
7.49 GB
xet

clean up 2 months ago
tahoe_df_AXIN2.csv

4.34 kB
clean up 2 months ago
tahoe_df_EGR1.csv

4.27 kB
clean up 2 months ago
tahoe_gene_names.pkl
Detected Pickle imports (3)
- "numpy.ndarray",
- "numpy._core.multiarray._reconstruct",
- "numpy.dtype"
What is a pickle import?
365 kB
xet

clean up 2 months ago
tahoe_in_adata.h5ad

442 MB
xet

clean up 2 months ago
tahoe_plot.h5ad

11.4 MB
xet

Add files using upload-large-folder tool about 2 months ago
tahoe_ptb_data.h5ad

40.3 MB
xet

clean up 2 months ago
tahoe_recon_pairs.pkl
Detected Pickle imports (12)
- "pandas.core.frame.DataFrame",
- "anndata._core.anndata.AnnData",
- "numpy._core.multiarray._reconstruct",
- "pandas.core.indexes.base.Index",
- "numpy.ndarray",
- "anndata._core.file_backing.AnnDataFileManager",
- "pandas.core.internals.managers.BlockManager",
- "numpy.dtype",
- "builtins.slice",
- "pandas.core.indexes.base._new_Index",
- "pandas._libs.internals._unpickle_block",
- "collections.OrderedDict"
How to fix it?
4.85 GB
xet

clean up 2 months ago
tahoe_recons_umap.pkl
Detected Pickle imports (15)
- "numpy.ndarray",
- "anndata._core.file_backing.AnnDataFileManager",
- "pandas.core.indexes.base.Index",
- "pandas._libs.internals._unpickle_block",
- "pandas.core.frame.DataFrame",
- "pandas.core.dtypes.dtypes.CategoricalDtype",
- "numpy.dtype",
- "numpy._core.multiarray._reconstruct",
- "collections.OrderedDict",
- "anndata._core.anndata.AnnData",
- "pandas.core.internals.managers.BlockManager",
- "pandas.core.indexes.base._new_Index",
- "builtins.slice",
- "pandas._libs.arrays.__pyx_unpickle_NDArrayBacked",
- "pandas.core.arrays.categorical.Categorical"
How to fix it?
1.75 GB
xet

clean up 2 months ago
tahoe_ref_data.h5ad

1.17 GB
xet

clean up 2 months ago