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PiperNET

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7

Rename raw/rnaseq to interim/transxpress, interim/rnaseq_clstr to interim/cdhit, interim/lcms_mzmine to interim/mzmine; update dataset card

#6
by titodamiani - opened
base: refs/heads/main
←
from: refs/pr/6
Discussion Files changed
+130
-8
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  1. .gitattributes +122 -0
  2. README.md +8 -8
  3. interim/{rnaseq_clstr → cdhit}/piper06/transcriptome_clstr.pep +0 -0
  4. interim/{rnaseq_clstr → cdhit}/piper06/transcriptome_clstr.pep.clstr +0 -0
  5. interim/{rnaseq_clstr → cdhit}/piper09/transcriptome_clstr.pep +0 -0
  6. interim/{rnaseq_clstr → cdhit}/piper09/transcriptome_clstr.pep.clstr +0 -0
  7. interim/{rnaseq_clstr → cdhit}/piper10/transcriptome_clstr.pep +0 -0
  8. interim/{rnaseq_clstr → cdhit}/piper10/transcriptome_clstr.pep.clstr +0 -0
  9. interim/{rnaseq_clstr → cdhit}/piper12/transcriptome_clstr.pep +0 -0
  10. interim/{rnaseq_clstr → cdhit}/piper12/transcriptome_clstr.pep.clstr +0 -0
  11. interim/{rnaseq_clstr → cdhit}/piper20/transcriptome_clstr.pep +0 -0
  12. interim/{rnaseq_clstr → cdhit}/piper20/transcriptome_clstr.pep.clstr +0 -0
  13. interim/{rnaseq_clstr → cdhit}/piper23/transcriptome_clstr.pep +0 -0
  14. interim/{rnaseq_clstr → cdhit}/piper23/transcriptome_clstr.pep.clstr +0 -0
  15. interim/{rnaseq_clstr → cdhit}/piper25/transcriptome_clstr.pep +0 -0
  16. interim/{rnaseq_clstr → cdhit}/piper25/transcriptome_clstr.pep.clstr +0 -0
  17. interim/{rnaseq_clstr → cdhit}/piper26/transcriptome_clstr.pep +0 -0
  18. interim/{rnaseq_clstr → cdhit}/piper26/transcriptome_clstr.pep.clstr +0 -0
  19. interim/{rnaseq_clstr → cdhit}/piper27/transcriptome_clstr.pep +0 -0
  20. interim/{rnaseq_clstr → cdhit}/piper27/transcriptome_clstr.pep.clstr +0 -0
  21. interim/{rnaseq_clstr → cdhit}/piper32/transcriptome_clstr.pep +0 -0
  22. interim/{rnaseq_clstr → cdhit}/piper32/transcriptome_clstr.pep.clstr +0 -0
  23. interim/{rnaseq_clstr → cdhit}/piper54/transcriptome_clstr.pep +0 -0
  24. interim/{rnaseq_clstr → cdhit}/piper54/transcriptome_clstr.pep.clstr +0 -0
  25. interim/{rnaseq_clstr → cdhit}/piper55/transcriptome_clstr.pep +0 -0
  26. interim/{rnaseq_clstr → cdhit}/piper55/transcriptome_clstr.pep.clstr +0 -0
  27. interim/{rnaseq_clstr → cdhit}/piper56/transcriptome_clstr.pep +0 -0
  28. interim/{rnaseq_clstr → cdhit}/piper56/transcriptome_clstr.pep.clstr +0 -0
  29. interim/{lcms_mzmine → mzmine}/annotation.csv +0 -0
  30. interim/{lcms_mzmine → mzmine}/fbmn.mgf +0 -0
  31. interim/{lcms_mzmine → mzmine}/fbmn_edges_msannotation.csv +0 -0
  32. interim/{lcms_mzmine → mzmine}/fbmn_quant.csv +0 -0
  33. interim/{lcms_mzmine → mzmine}/network_fbmn.graphml +0 -0
  34. interim/{lcms_mzmine → mzmine}/network_iimn.graphml +0 -0
  35. interim/{lcms_mzmine → mzmine}/sirius.mgf +0 -0
  36. {raw/rnaseq → interim/transxpress}/piper06/annotations/pfam_orfs.out +0 -0
  37. {raw/rnaseq → interim/transxpress}/piper06/annotations/signalp_pep.out +0 -0
  38. {raw/rnaseq → interim/transxpress}/piper06/annotations/sprotblastp_orfs.out +0 -0
  39. {raw/rnaseq → interim/transxpress}/piper06/annotations/targetp_pep.out +0 -0
  40. {raw/rnaseq → interim/transxpress}/piper06/annotations/tmhmm_pep.out +0 -0
  41. {raw/rnaseq → interim/transxpress}/piper06/busco_report.txt +0 -0
  42. {raw/rnaseq → interim/transxpress}/piper06/transcriptome.fasta +0 -0
  43. {raw/rnaseq → interim/transxpress}/piper06/transcriptome.pep +0 -0
  44. {raw/rnaseq → interim/transxpress}/piper06/transcriptome_expression_isoform.tsv +0 -0
  45. {raw/rnaseq → interim/transxpress}/piper09/annotations/pfam_orfs.out +0 -0
  46. {raw/rnaseq → interim/transxpress}/piper09/annotations/signalp_pep.out +0 -0
  47. {raw/rnaseq → interim/transxpress}/piper09/annotations/sprotblastp_orfs.out +0 -0
  48. {raw/rnaseq → interim/transxpress}/piper09/annotations/targetp_pep.out +0 -0
  49. {raw/rnaseq → interim/transxpress}/piper09/annotations/tmhmm_pep.out +0 -0
  50. {raw/rnaseq → interim/transxpress}/piper09/busco_report.txt +0 -0
.gitattributes CHANGED
@@ -571,3 +571,125 @@ external/orthogroups/orthofinder/results/Results_Oct13/WorkingDirectory/OrthoFin
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  external/orthogroups/orthofinder/results/Results_Oct13/WorkingDirectory/OrthoFinder/Results_analysis_2953776/WorkingDirectory/clusters_OrthoFinder_I1.5.txt_id_pairs.txt filter=lfs diff=lfs merge=lfs -text
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  external/orthogroups/orthofinder/results/Results_Oct13/WorkingDirectory/SequenceIDs.txt filter=lfs diff=lfs merge=lfs -text
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  external/orthogroups/sonicpd/graph_only/not_assigned_genes.ortholog_groups.tsv filter=lfs diff=lfs merge=lfs -text
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  external/orthogroups/orthofinder/results/Results_Oct13/WorkingDirectory/OrthoFinder/Results_analysis_2953776/WorkingDirectory/clusters_OrthoFinder_I1.5.txt_id_pairs.txt filter=lfs diff=lfs merge=lfs -text
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  external/orthogroups/orthofinder/results/Results_Oct13/WorkingDirectory/SequenceIDs.txt filter=lfs diff=lfs merge=lfs -text
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  external/orthogroups/sonicpd/graph_only/not_assigned_genes.ortholog_groups.tsv filter=lfs diff=lfs merge=lfs -text
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+ interim/cdhit/piper06/transcriptome_clstr.pep filter=lfs diff=lfs merge=lfs -text
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+ interim/cdhit/piper09/transcriptome_clstr.pep filter=lfs diff=lfs merge=lfs -text
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+ interim/cdhit/piper10/transcriptome_clstr.pep filter=lfs diff=lfs merge=lfs -text
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+ interim/cdhit/piper10/transcriptome_clstr.pep.clstr filter=lfs diff=lfs merge=lfs -text
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+ interim/cdhit/piper12/transcriptome_clstr.pep filter=lfs diff=lfs merge=lfs -text
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+ interim/cdhit/piper12/transcriptome_clstr.pep.clstr filter=lfs diff=lfs merge=lfs -text
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+ interim/cdhit/piper20/transcriptome_clstr.pep filter=lfs diff=lfs merge=lfs -text
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+ interim/cdhit/piper20/transcriptome_clstr.pep.clstr filter=lfs diff=lfs merge=lfs -text
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+ interim/cdhit/piper23/transcriptome_clstr.pep filter=lfs diff=lfs merge=lfs -text
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+ interim/cdhit/piper23/transcriptome_clstr.pep.clstr filter=lfs diff=lfs merge=lfs -text
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+ interim/cdhit/piper25/transcriptome_clstr.pep filter=lfs diff=lfs merge=lfs -text
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+ interim/cdhit/piper25/transcriptome_clstr.pep.clstr filter=lfs diff=lfs merge=lfs -text
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+ interim/cdhit/piper26/transcriptome_clstr.pep filter=lfs diff=lfs merge=lfs -text
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+ interim/cdhit/piper26/transcriptome_clstr.pep.clstr filter=lfs diff=lfs merge=lfs -text
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+ interim/cdhit/piper27/transcriptome_clstr.pep filter=lfs diff=lfs merge=lfs -text
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+ interim/cdhit/piper27/transcriptome_clstr.pep.clstr filter=lfs diff=lfs merge=lfs -text
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+ interim/cdhit/piper32/transcriptome_clstr.pep filter=lfs diff=lfs merge=lfs -text
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+ interim/cdhit/piper32/transcriptome_clstr.pep.clstr filter=lfs diff=lfs merge=lfs -text
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+ interim/cdhit/piper54/transcriptome_clstr.pep filter=lfs diff=lfs merge=lfs -text
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+ interim/cdhit/piper55/transcriptome_clstr.pep filter=lfs diff=lfs merge=lfs -text
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+ interim/cdhit/piper56/transcriptome_clstr.pep filter=lfs diff=lfs merge=lfs -text
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+ interim/cdhit/piper56/transcriptome_clstr.pep.clstr filter=lfs diff=lfs merge=lfs -text
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+ interim/mzmine/fbmn.mgf filter=lfs diff=lfs merge=lfs -text
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+ interim/mzmine/network_fbmn.graphml filter=lfs diff=lfs merge=lfs -text
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+ interim/mzmine/network_iimn.graphml filter=lfs diff=lfs merge=lfs -text
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+ interim/mzmine/sirius.mgf filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper06/annotations/pfam_orfs.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper06/annotations/sprotblastp_orfs.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper06/annotations/targetp_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper06/transcriptome.fasta filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper06/transcriptome.pep filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper06/transcriptome_expression_isoform.tsv filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper09/annotations/pfam_orfs.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper09/annotations/sprotblastp_orfs.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper09/annotations/targetp_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper09/transcriptome.fasta filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper09/transcriptome.pep filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper09/transcriptome_expression_isoform.tsv filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper10/annotations/pfam_orfs.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper10/annotations/signalp_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper10/annotations/sprotblastp_orfs.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper10/annotations/targetp_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper10/annotations/tmhmm_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper10/transcriptome.fasta filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper10/transcriptome.pep filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper10/transcriptome_expression_isoform.tsv filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper12/annotations/pfam_orfs.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper12/annotations/signalp_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper12/annotations/sprotblastp_orfs.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper12/annotations/targetp_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper12/annotations/tmhmm_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper12/transcriptome.fasta filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper12/transcriptome.pep filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper12/transcriptome_expression_isoform.tsv filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper20/annotations/pfam_orfs.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper20/annotations/signalp_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper20/annotations/sprotblastp_orfs.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper20/annotations/targetp_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper20/annotations/tmhmm_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper20/transcriptome.fasta filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper20/transcriptome.pep filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper20/transcriptome_expression_isoform.tsv filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper23/annotations/pfam_orfs.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper23/annotations/signalp_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper23/annotations/sprotblastp_orfs.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper23/annotations/targetp_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper23/annotations/tmhmm_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper23/transcriptome.fasta filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper23/transcriptome.pep filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper23/transcriptome_expression_isoform.tsv filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper25/annotations/pfam_orfs.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper25/annotations/signalp_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper25/annotations/sprotblastp_orfs.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper25/annotations/targetp_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper25/annotations/tmhmm_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper25/transcriptome.fasta filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper25/transcriptome.pep filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper25/transcriptome_expression_isoform.tsv filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper26/annotations/pfam_orfs.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper26/annotations/signalp_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper26/annotations/sprotblastp_orfs.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper26/annotations/targetp_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper26/annotations/tmhmm_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper26/transcriptome.fasta filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper26/transcriptome.pep filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper26/transcriptome_expression_isoform.tsv filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper27/annotations/pfam_orfs.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper27/annotations/signalp_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper27/annotations/sprotblastp_orfs.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper27/annotations/targetp_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper27/annotations/tmhmm_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper27/transcriptome.fasta filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper27/transcriptome.pep filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper27/transcriptome_expression_isoform.tsv filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper32/annotations/pfam_orfs.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper32/annotations/signalp_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper32/annotations/sprotblastp_orfs.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper32/annotations/targetp_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper32/annotations/tmhmm_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper32/transcriptome.fasta filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper32/transcriptome.pep filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper32/transcriptome_expression_isoform.tsv filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper54/annotations/pfam_orfs.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper54/annotations/sprotblastp_orfs.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper54/annotations/targetp_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper54/transcriptome.fasta filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper54/transcriptome.pep filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper54/transcriptome_expression_isoform.tsv filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper55/annotations/pfam_orfs.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper55/annotations/sprotblastp_orfs.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper55/annotations/targetp_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper55/transcriptome.fasta filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper55/transcriptome.pep filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper55/transcriptome_expression_isoform.tsv filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper56/annotations/pfam_orfs.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper56/annotations/signalp_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper56/annotations/sprotblastp_orfs.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper56/annotations/targetp_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper56/annotations/tmhmm_pep.out filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper56/transcriptome.fasta filter=lfs diff=lfs merge=lfs -text
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+ interim/transxpress/piper56/transcriptome.pep filter=lfs diff=lfs merge=lfs -text
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README.md CHANGED
@@ -24,15 +24,15 @@ data/
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  │ ├── lcms/
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  │ │ ├── rawfiles/ # LC-MS raw files, mzML (140 files)
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  │ │ └── metadata.tsv # sample metadata, read by MZmine
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- │ └── rnaseq/piperNN/ # transXpress output, one folder per sample ID (13)
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- │ ├── transcriptome.fasta # de novo assembly
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- │ ├── transcriptome.pep # predicted proteins
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- │ ├── transcriptome_expression_isoform.tsv
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- │ ├── busco_report.txt
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- │ └── annotations/ # Pfam, BLASTp, SignalP, TargetP, TMHMM
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  ├── interim/
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- │ ├── lcms_mzmine/ # MZmine output: feature table, MS/MS spectra (.mgf), annotations, networks (.graphml)
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- │ └── rnaseq_clstr/piperNN/ # CD-HIT clustered proteomes
 
 
 
 
 
 
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  ├── external/
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  │ ├── molecular_networks/
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  │ │ └── gnps2/ # GNPS2 feature-based molecular networking results
 
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  │ ├── lcms/
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  │ │ ├── rawfiles/ # LC-MS raw files, mzML (140 files)
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  │ │ └── metadata.tsv # sample metadata, read by MZmine
 
 
 
 
 
 
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  ├── interim/
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+ │ ├── mzmine/ # MZmine output: feature table, MS/MS spectra (.mgf), annotations, networks (.graphml)
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+ │ ├── transxpress/piperNN/ # transXpress output, one folder per sample ID (13)
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+ │ │ ├── transcriptome.fasta # de novo assembly
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+ │ │ ├── transcriptome.pep # predicted proteins
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+ │ │ ├── transcriptome_expression_isoform.tsv
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+ │ │ ├── busco_report.txt
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+ │ │ └── annotations/ # Pfam, BLASTp, SignalP, TargetP, TMHMM
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+ │ └── cdhit/piperNN/ # CD-HIT clustered proteomes
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  ├── external/
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  │ ├── molecular_networks/
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  │ │ └── gnps2/ # GNPS2 feature-based molecular networking results
interim/{rnaseq_clstr → cdhit}/piper06/transcriptome_clstr.pep RENAMED
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interim/{rnaseq_clstr → cdhit}/piper27/transcriptome_clstr.pep RENAMED
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interim/{rnaseq_clstr → cdhit}/piper27/transcriptome_clstr.pep.clstr RENAMED
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interim/{rnaseq_clstr → cdhit}/piper32/transcriptome_clstr.pep RENAMED
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interim/{rnaseq_clstr → cdhit}/piper32/transcriptome_clstr.pep.clstr RENAMED
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interim/{rnaseq_clstr → cdhit}/piper54/transcriptome_clstr.pep RENAMED
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interim/{rnaseq_clstr → cdhit}/piper54/transcriptome_clstr.pep.clstr RENAMED
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interim/{rnaseq_clstr → cdhit}/piper55/transcriptome_clstr.pep RENAMED
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interim/{rnaseq_clstr → cdhit}/piper55/transcriptome_clstr.pep.clstr RENAMED
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interim/{rnaseq_clstr → cdhit}/piper56/transcriptome_clstr.pep RENAMED
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interim/{rnaseq_clstr → cdhit}/piper56/transcriptome_clstr.pep.clstr RENAMED
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interim/{lcms_mzmine → mzmine}/annotation.csv RENAMED
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interim/{lcms_mzmine → mzmine}/fbmn.mgf RENAMED
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interim/{lcms_mzmine → mzmine}/fbmn_edges_msannotation.csv RENAMED
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interim/{lcms_mzmine → mzmine}/fbmn_quant.csv RENAMED
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interim/{lcms_mzmine → mzmine}/network_fbmn.graphml RENAMED
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interim/{lcms_mzmine → mzmine}/network_iimn.graphml RENAMED
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interim/{lcms_mzmine → mzmine}/sirius.mgf RENAMED
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{raw/rnaseq → interim/transxpress}/piper06/annotations/pfam_orfs.out RENAMED
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{raw/rnaseq → interim/transxpress}/piper06/annotations/signalp_pep.out RENAMED
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{raw/rnaseq → interim/transxpress}/piper06/annotations/sprotblastp_orfs.out RENAMED
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{raw/rnaseq → interim/transxpress}/piper06/annotations/targetp_pep.out RENAMED
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{raw/rnaseq → interim/transxpress}/piper06/annotations/tmhmm_pep.out RENAMED
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{raw/rnaseq → interim/transxpress}/piper06/busco_report.txt RENAMED
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{raw/rnaseq → interim/transxpress}/piper06/transcriptome.fasta RENAMED
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{raw/rnaseq → interim/transxpress}/piper06/transcriptome.pep RENAMED
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{raw/rnaseq → interim/transxpress}/piper06/transcriptome_expression_isoform.tsv RENAMED
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{raw/rnaseq → interim/transxpress}/piper09/annotations/pfam_orfs.out RENAMED
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{raw/rnaseq → interim/transxpress}/piper09/annotations/signalp_pep.out RENAMED
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{raw/rnaseq → interim/transxpress}/piper09/annotations/sprotblastp_orfs.out RENAMED
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{raw/rnaseq → interim/transxpress}/piper09/annotations/targetp_pep.out RENAMED
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{raw/rnaseq → interim/transxpress}/piper09/annotations/tmhmm_pep.out RENAMED
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{raw/rnaseq → interim/transxpress}/piper09/busco_report.txt RENAMED
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