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tonynzh2
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afdb6

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protein-structure

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1.76 TB

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History: 4304 commits

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Publish closed M-CSA recovery results and actual HPC progress

b761b69 verified 1 minute ago

alphafill
AlphaFill remains stopped; all closed result archives preserved and uploaded 2 days ago
alphafill_20260930
Publish optional AlphaFill geometry workflow and HPC task ownership 5 days ago
annotations
Record complete reviewed BioLiP2–InterPro release 3 days ago
audits
Complete 483-shard motif-search statistical audit; distinguish server scope about 1 hour ago
evaluations
Back up completed all-atom checkpoint evaluation 3 days ago
experiments
Back up controlled localized residue-path trials and portable public inputs about 12 hours ago
ligand_pairs_20260930
Publish optional AlphaFill geometry workflow and HPC task ownership 5 days ago
ligands
Publish optional AlphaFill geometry workflow and HPC task ownership 5 days ago
oracle
HPC GO diagnostic scores and progress 8 minutes ago
queries
Publish flexible motif query recovery and runnable inputs 3 days ago
recovery
Publish closed M-CSA recovery results and actual HPC progress 1 minute ago
reports
Update collaborator report with research roadmap and methods-first explanations 3 days ago
results
Upload 2 completed HPC motif-search shards 7 days ago
shards
Upload missing original-cluster coordinate shards for full HPC dataset access 5 days ago
validation
Upload validation/local_handoff_20261001/coordinate_upload_status.json with huggingface_hub 5 days ago
validation_20260930
Repair QC finalization hang after successful output; update measured HPC progress 5 days ago
.gitattributes

6.2 kB
Publish independent native sequence evidence for recovery QC about 8 hours ago
HPC_LIGAND_DATASET_HANDOVER.md

3.09 kB
Publish executable full-QC workflow using original HPC312 / local171 ownership 5 days ago
HPC_RESULTS_UPLOAD.md

5.07 kB
Add completed HPC result upload instructions 9 days ago
HPC_VALIDATION_HANDOVER.md

11.9 kB
Point HPC to the explicitly authorized remaining-local QC wave 5 days ago
MCSA_COFACTOR_VALIDATION.md

8.93 kB
Publish ligand-aware HPC dataset handover and 864 reference tasks 6 days ago
README.md

4.61 kB
Publish optional AlphaFill geometry workflow and HPC task ownership 5 days ago
SHARD_ALLOCATION.md

4.06 kB
Add completed HPC result upload instructions 9 days ago
completed_shards.json

746 Bytes
Update local search completion: 171/483 shards 8 days ago
hpc_assigned_shards.txt

1.25 kB
Reserve 171 original-cluster shards and assign 312 exclusively to HPC 9 days ago
local_active_shards.txt

101 Bytes
Reserve 171 original-cluster shards and assign 312 exclusively to HPC 9 days ago
local_completed_shards.txt

403 Bytes
Reserve 171 original-cluster shards and assign 312 exclusively to HPC 9 days ago
local_excluded_shards.txt

574 Bytes
Reserve 171 original-cluster shards and assign 312 exclusively to HPC 9 days ago
local_planned_shards.txt

70 Bytes
Reserve 171 original-cluster shards and assign 312 exclusively to HPC 9 days ago
local_reserved_shards.txt

171 Bytes
Reserve 171 original-cluster shards and assign 312 exclusively to HPC 9 days ago
local_search_progress.json

4.66 kB
Update local search completion: 171/483 shards 6 days ago
manifest.jsonl

54.1 kB
Upload manifest.jsonl with huggingface_hub 10 days ago
motifs_v2.tar.gz

67.4 MB
xet

Upload motifs_v2.tar.gz with huggingface_hub 10 days ago
remaining_shards.txt

1.25 kB
Update local search completion: 171/483 shards 8 days ago
search_snapshot.json

801 Bytes
Upload search_snapshot.json with huggingface_hub 10 days ago
shard_assignment.json

18.1 kB
Reserve 171 original-cluster shards and assign 312 exclusively to HPC 9 days ago
shard_assignments.tsv

10.2 kB
Reserve 171 original-cluster shards and assign 312 exclusively to HPC 9 days ago
upload_status.json

3.89 kB
Upload upload_status.json with huggingface_hub 9 days ago