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paradoxdan commited on
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4b4dcb2
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1 Parent(s): 22c2e8a

Publish replogle_rpe1_essential

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.gitattributes CHANGED
@@ -61,3 +61,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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  adamson2016/processed.h5ad filter=lfs diff=lfs merge=lfs -text
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  norman2019/processed.h5ad filter=lfs diff=lfs merge=lfs -text
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  replogle_k562_essential/processed.h5ad filter=lfs diff=lfs merge=lfs -text
 
 
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  adamson2016/processed.h5ad filter=lfs diff=lfs merge=lfs -text
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  norman2019/processed.h5ad filter=lfs diff=lfs merge=lfs -text
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  replogle_k562_essential/processed.h5ad filter=lfs diff=lfs merge=lfs -text
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+ replogle_rpe1_essential/processed.h5ad filter=lfs diff=lfs merge=lfs -text
replogle_rpe1_essential/meta.yaml ADDED
@@ -0,0 +1,45 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ build:
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+ built_at: '2026-09-04T15:34:25.147266'
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+ pkg_version: 0.1.0
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+ dataset:
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+ assay: Perturb-seq
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+ cell_type: null
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+ disease: null
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+ modality: RNA
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+ name: replogle_rpe1_essential
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+ organism: homo_sapiens
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+ paper_name: Mapping information-rich genotype-phenotype landscapes with genome-scale
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+ Perturb-seq
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+ paper_url: https://pmc.ncbi.nlm.nih.gov/articles/PMC9380471/
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+ perturbation_method: CRISPRi
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+ perturbation_type: genetic
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+ sample_name: RPE1
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+ sample_type: cell_line
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+ version: 0.1.0
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+ year_published: 2022
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+ expression:
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+ format: h5ad
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+ h5ad_path: rpe1_raw_singlecell_01.h5ad
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+ prefix: null
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+ preprocessed: false
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+ root_path: replogle_rpe1_essential
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+ perturbation:
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+ barcode_column: null
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+ control_names:
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+ - non-targeting
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+ file_name: null
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+ guide_aliases: null
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+ header_row: null
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+ joined: true
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+ perturbation_identity_column: gene
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+ root_path: replogle_rpe1_essential
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+ preprocessing:
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+ min_cells: 3
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+ min_genes: 200
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+ n_hvg: 2000
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+ normalized_sum: 10000
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+ source:
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+ download_url:
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+ - https://plus.figshare.com/ndownloader/files/35775606
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+ identifier: https://doi.org/10.25452/figshare.plus.20029387
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+ provider: figshare
replogle_rpe1_essential/qc/coverage.png ADDED

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replogle_rpe1_essential/qc/effect_distribution.png ADDED

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replogle_rpe1_essential/qc/pca.png ADDED

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replogle_rpe1_essential/qc/perturbation_stats.csv ADDED
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