Commit ·
4b4dcb2
1
Parent(s): 22c2e8a
Publish replogle_rpe1_essential
Browse files- .gitattributes +1 -0
- replogle_rpe1_essential/meta.yaml +45 -0
- replogle_rpe1_essential/qc/coverage.png +3 -0
- replogle_rpe1_essential/qc/coverage_vs_effect.png +3 -0
- replogle_rpe1_essential/qc/effect_distribution.png +3 -0
- replogle_rpe1_essential/qc/pca.png +3 -0
- replogle_rpe1_essential/qc/perturbation_stats.csv +0 -0
.gitattributes
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@@ -61,3 +61,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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adamson2016/processed.h5ad filter=lfs diff=lfs merge=lfs -text
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norman2019/processed.h5ad filter=lfs diff=lfs merge=lfs -text
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replogle_k562_essential/processed.h5ad filter=lfs diff=lfs merge=lfs -text
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adamson2016/processed.h5ad filter=lfs diff=lfs merge=lfs -text
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norman2019/processed.h5ad filter=lfs diff=lfs merge=lfs -text
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replogle_k562_essential/processed.h5ad filter=lfs diff=lfs merge=lfs -text
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replogle_rpe1_essential/processed.h5ad filter=lfs diff=lfs merge=lfs -text
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replogle_rpe1_essential/meta.yaml
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build:
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built_at: '2026-09-04T15:34:25.147266'
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pkg_version: 0.1.0
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dataset:
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assay: Perturb-seq
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cell_type: null
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disease: null
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modality: RNA
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name: replogle_rpe1_essential
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organism: homo_sapiens
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paper_name: Mapping information-rich genotype-phenotype landscapes with genome-scale
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Perturb-seq
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paper_url: https://pmc.ncbi.nlm.nih.gov/articles/PMC9380471/
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perturbation_method: CRISPRi
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perturbation_type: genetic
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sample_name: RPE1
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sample_type: cell_line
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version: 0.1.0
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year_published: 2022
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expression:
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format: h5ad
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h5ad_path: rpe1_raw_singlecell_01.h5ad
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prefix: null
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preprocessed: false
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root_path: replogle_rpe1_essential
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perturbation:
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barcode_column: null
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control_names:
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- non-targeting
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file_name: null
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guide_aliases: null
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header_row: null
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joined: true
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perturbation_identity_column: gene
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root_path: replogle_rpe1_essential
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preprocessing:
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min_cells: 3
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min_genes: 200
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n_hvg: 2000
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normalized_sum: 10000
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source:
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download_url:
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- https://plus.figshare.com/ndownloader/files/35775606
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identifier: https://doi.org/10.25452/figshare.plus.20029387
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provider: figshare
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replogle_rpe1_essential/qc/coverage.png
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Git LFS Details
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replogle_rpe1_essential/qc/coverage_vs_effect.png
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Git LFS Details
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replogle_rpe1_essential/qc/effect_distribution.png
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Git LFS Details
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replogle_rpe1_essential/qc/pca.png
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Git LFS Details
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replogle_rpe1_essential/qc/perturbation_stats.csv
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