Hugging Face's logo

Datasets:
xuxuxuxuxu
/
PathGrounding

Languages:
English
Tags:
pathology
visual-grounding
auxiliary-training
parent-child
Dataset card Files
xet
 Community
1

Publish quality-filtered auxiliary training release

#1
by xuxuxuxuxu - opened
base: refs/heads/main
←
from: refs/pr/1
Discussion Files changed
+6070
-617
Files changed (48) hide show
  1. .gitattributes +1 -0
  2. README.md +120 -68
  3. archives/annotations-00000.tar +2 -2
  4. archives/images-child-00000.tar +2 -2
  5. archives/images-child-00001.tar +2 -2
  6. archives/images-child-00002.tar +2 -2
  7. archives/images-parent-00000.tar +2 -2
  8. archives/images-parent-00001.tar +2 -2
  9. archives/images-parent-00002.tar +2 -2
  10. archives/images-parent-00003.tar +2 -2
  11. archives/images-parent-00004.tar +2 -2
  12. archives/images-parent-00005.tar +2 -2
  13. archives/images-parent-00006.tar +2 -2
  14. archives/images-parent-00007.tar +2 -2
  15. archives/images-parent-00008.tar +2 -2
  16. archives/images-parent-00009.tar +2 -2
  17. archives/images-parent-00010.tar +2 -2
  18. package/FILTER_RESULTS.md +19 -0
  19. package/METHODS.md +216 -0
  20. package/README.md +72 -196
  21. package/audit/row_decisions.jsonl +3 -0
  22. package/index.json +69 -64
  23. package/manifest.jsonl +2 -2
  24. package/metadata/unfiltered_export_index.json +148 -0
  25. package/metadata/unfiltered_export_validation.json +87 -0
  26. package/quality_filter_policy.json +75 -0
  27. package/quality_filter_report.json +422 -0
  28. package/quality_validation.json +29 -0
  29. package/review/bcss_excluded.jpg +3 -0
  30. package/review/bcss_kept.jpg +3 -0
  31. package/review/lizard_excluded.jpg +3 -0
  32. package/review/lizard_kept.jpg +3 -0
  33. package/review/low_focus_candidates.json +0 -0
  34. package/review/midogpp_kept.jpg +3 -0
  35. package/review/nucls_excluded.jpg +3 -0
  36. package/review/nucls_kept.jpg +3 -0
  37. package/review/nuinsseg_excluded.jpg +3 -0
  38. package/review/nuinsseg_kept.jpg +3 -0
  39. package/review/pannuke_excluded.jpg +3 -0
  40. package/review/pannuke_kept.jpg +3 -0
  41. package/review/refpath_train_excluded.jpg +3 -0
  42. package/review/refpath_train_kept.jpg +3 -0
  43. package/review/samples.json +1222 -0
  44. package/sampling_config.json +13 -0
  45. package/storage_compaction.json +398 -0
  46. package/training_data.py +12 -1
  47. package/validation.json +61 -61
  48. release_manifest.json +259 -195
.gitattributes CHANGED
@@ -59,3 +59,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
59
  *.mp4 filter=lfs diff=lfs merge=lfs -text
60
  *.webm filter=lfs diff=lfs merge=lfs -text
61
  package/manifest.jsonl filter=lfs diff=lfs merge=lfs -text
 
 
59
  *.mp4 filter=lfs diff=lfs merge=lfs -text
60
  *.webm filter=lfs diff=lfs merge=lfs -text
61
  package/manifest.jsonl filter=lfs diff=lfs merge=lfs -text
62
+ package/audit/row_decisions.jsonl filter=lfs diff=lfs merge=lfs -text
README.md CHANGED
@@ -6,70 +6,70 @@ tags:
6
  - visual-grounding
7
  - auxiliary-training
8
  - parent-child
9
- pretty_name: PathGrounding - ZoomPath Auxiliary Training v4
10
  ---
11
 
12
  # PathGrounding
13
 
14
- Private, portable auxiliary training data for single-step pathology image
15
- grounding. Each record includes a parent image, an exact child crop, its bounding
16
- box in parent coordinates, a text question, and organ/MPP/training-level metadata
17
- when available. There are **618,432 parent-child pairs from seven sources**, using
18
- **34,193 distinct parent images**.
19
 
20
- This is not the ZoomPath v4 benchmark, does not include raw WSIs, and does not
21
- inherit the benchmark's doctor review. Source licenses and restrictions remain
22
- in the package; RefPath is gated and is not assumed redistributable. Keep this
23
- repository private unless all upstream redistribution permissions are checked.
 
24
 
25
- ## Data
 
 
 
 
26
 
27
- | Source | Pairs |
 
 
28
  | --- | ---: |
29
- | RefPath train | 28,908 |
30
- | PanNuke | 187,831 |
31
- | NuInsSeg | 25,718 |
32
- | NuCLS | 35,848 |
33
- | BCSS | 6,153 |
34
- | Lizard | 325,966 |
35
  | MIDOGpp | 8,008 |
36
- | **Total** | **618,432** |
37
-
38
- `partition` is `training`. Original `source_split`/fold information is preserved;
39
- no new train/val/test split is imposed. Keep targets from the same parent together
40
- when defining a later split. Nominal MPP and training scale estimates are flagged
41
- as approximate, especially the heuristic 20x/40x assignment for RefPath.
42
 
43
- ## Download And Restore
 
 
 
 
44
 
45
- Python 3.10+ is required. Authenticate with an account that has repository access:
 
46
 
47
  ```bash
48
  pip install -U huggingface_hub pillow
49
  hf auth login
50
- hf download xuxuxuxuxu/PathGrounding \
51
- --repo-type dataset --local-dir /data/pathgrounding-download
52
- python /data/pathgrounding-download/tools/restore_package.py \
53
- /data/pathgrounding-download /data/zoompath_training_v4
54
  ```
55
 
56
- Alternatively, call `huggingface_hub.snapshot_download` with the same repository,
57
- `repo_type="dataset"`, and `local_dir="/data/pathgrounding-download"`, then run
58
- the restore command. Interrupted downloads can be resumed.
59
-
60
- The images and per-parent annotations are stored in uncompressed TAR shards
61
- (approximately 2 GiB each) rather than 686,000 individual repository files.
62
- Restoration verifies every shard's SHA-256 checksum and recreates the original
63
- relative paths. It does not resize images or rewrite annotations/questions.
64
- Restoration can be rerun after interruption; it rewrites image/annotation files
65
- from the verified archives. Use a dedicated output directory.
66
-
67
- The data package is approximately 54 GB. Allow roughly 115 GB of free space to
68
- retain both downloaded archives and the restored package.
69
-
70
- ## Training Reader
71
 
72
  ```bash
 
 
73
  export PYTHONPATH=/data/zoompath_training_v4:$PYTHONPATH
74
  ```
75
 
@@ -79,37 +79,89 @@ from training_data import AuxiliaryTrainingReader
79
  reader = AuxiliaryTrainingReader("/data/zoompath_training_v4")
80
  row = next(reader.iter_records(dataset="refpath_train"))
81
  sample = reader.load_pair(row)
82
-
83
- parent = sample["parent_image"]
84
- child = sample["child_image"]
85
  question = sample["question"]
86
  selected_box = sample["child_bbox_xyxy_in_parent"]
87
- all_valid_boxes = sample["valid_target_bboxes_xyxy_in_parent"]
 
88
  organ, mpp, level = sample["organ"], sample["mpp"], sample["level"]
89
  ```
90
 
91
- Coordinates are integer pixel XYXY, top-left origin, half-open edges. The child
92
- is exactly the selected parent crop. `level` is `high`/`mid`/`low`, not a WSI
93
- pyramid index; MPP is in microns per pixel. Unsupported metadata remains null.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
94
 
95
- For multi-target training, use **all valid boxes**, not every box in the parent
96
- annotation file and not just the selected box. The reader applies the exact
97
- label/expression filter and checks `target_count`. Unselected matching targets
98
- are valid alternatives, not negatives. Stream `manifest.jsonl`; row-uniform
99
- sampling is not parent/query-uniform sampling.
100
 
101
  ## Layout And Validation
102
 
103
  | Repository path | Contents |
104
  | --- | --- |
105
- | `package/` | Manifest, index, reader, documentation, validation and source metadata |
106
- | `archives/` | Parent images, child crops and all per-parent annotations |
107
- | `tools/restore_package.py` | Checksum verifier and portable restoration tool |
108
- | `release_manifest.json` | File checksums, sizes, archive inventories and source counts |
109
-
110
- The restored package's `README.md` documents the full schema, provenance,
111
- approximate scale mapping, valid-target semantics and source restrictions.
112
- `validation.json` reports the completed export audit: all rows checked for
113
- structure/metadata and 700 deterministic crop pixel samples, with zero errors.
114
- The original source audit is preserved separately; the 700-sample export audit
115
- is not a claim that every exported image was rechecked pixel-by-pixel.
 
 
 
 
 
 
 
 
 
 
6
  - visual-grounding
7
  - auxiliary-training
8
  - parent-child
9
+ pretty_name: PathGrounding - Quality-Filtered Auxiliary Training
10
  ---
11
 
12
  # PathGrounding
13
 
14
+ Public, portable auxiliary training data for single-step pathology grounding.
15
+ The main package contains **235,346 quality-filtered parent-child pairs from
16
+ seven sources**, with **38,836 distinct parent images**. It replaces the earlier
17
+ unfiltered 618,432-pair main release.
 
18
 
19
+ **SegPath is a separate, optional package under `segpath/`: 2,193,058 pairs and
20
+ 105,864 parents.** It is not merged into the main manifest, counts, reader or
21
+ sampling configuration. It is disabled by default. Download it explicitly only
22
+ when needed; its mostly small semantic-region boxes differ from the larger
23
+ region-of-interest navigation targets in ZoomPath v4.
24
 
25
+ These are auxiliary training data, not the ZoomPath v4 benchmark. They contain no
26
+ raw WSIs and have not inherited the benchmark's doctor/pathologist review.
27
+ Upstream licenses and restrictions apply; RefPath is gated and redistribution
28
+ permission is not assumed; users must follow all relevant upstream terms.
29
+ SegPath is CC-BY-NC-SA 4.0.
30
 
31
+ ## Main Package
32
+
33
+ | Source | Retained pairs |
34
  | --- | ---: |
35
+ | BCSS | 2,836 |
36
+ | Lizard | 31,446 |
 
 
 
 
37
  | MIDOGpp | 8,008 |
38
+ | NuCLS | 32,538 |
39
+ | NuInsSeg | 20,521 |
40
+ | PanNuke | 111,605 |
41
+ | RefPath train | 28,392 |
42
+ | **Main total, excluding SegPath** | **235,346** |
 
43
 
44
+ Each record includes parent/child images, an exact parent-relative child box,
45
+ text question, organ and available scale metadata. `partition` is `training`;
46
+ original source split/fold information is retained, with no new train/val/test
47
+ split. Keep all related targets/parents, and source slides when identifiable,
48
+ together when defining later splits.
49
 
50
+ Python 3.10+ is required. Authenticate with an account that has repository access.
51
+ The explicit allow-list below does **not** download SegPath:
52
 
53
  ```bash
54
  pip install -U huggingface_hub pillow
55
  hf auth login
 
 
 
 
56
  ```
57
 
58
+ ```python
59
+ from huggingface_hub import snapshot_download
60
+
61
+ snapshot_download(
62
+ repo_id="xuxuxuxuxu/PathGrounding",
63
+ repo_type="dataset",
64
+ local_dir="/data/pathgrounding-download",
65
+ allow_patterns=["README.md", "release_manifest.json", "package/**",
66
+ "archives/**", "tools/restore_package.py"],
67
+ )
68
+ ```
 
 
 
 
69
 
70
  ```bash
71
+ python /data/pathgrounding-download/tools/restore_package.py \
72
+ /data/pathgrounding-download /data/zoompath_training_v4
73
  export PYTHONPATH=/data/zoompath_training_v4:$PYTHONPATH
74
  ```
75
 
 
79
  reader = AuxiliaryTrainingReader("/data/zoompath_training_v4")
80
  row = next(reader.iter_records(dataset="refpath_train"))
81
  sample = reader.load_pair(row)
82
+ parent, child = sample["parent_image"], sample["child_image"]
 
 
83
  question = sample["question"]
84
  selected_box = sample["child_bbox_xyxy_in_parent"]
85
+ valid_boxes = sample["valid_target_bboxes_xyxy_in_parent"]
86
+ ignored_boxes = sample["ignored_target_bboxes_xyxy_in_parent"]
87
  organ, mpp, level = sample["organ"], sample["mpp"], sample["level"]
88
  ```
89
 
90
+ The main images and annotations are uncompressed TAR shards, approximately
91
+ 2 GiB each. Restoration verifies SHA-256 and recreates relative paths without
92
+ resizing or changing questions. It is resumable by rerunning the command.
93
+ Use a dedicated output directory and allow space for both the downloaded shards
94
+ and the restored package. Exact byte totals are in `release_manifest.json`.
95
+
96
+ Coordinates are integer pixel XYXY, top-left origin, half-open edges. Children
97
+ are exact crops. For multi-target supervision, use all eligible `valid_boxes`,
98
+ not every annotated box or only the selected one. Source-supported answers
99
+ rejected by quality filtering remain `ignored_boxes`, never negatives.
100
+ The reader checks the exact label/expression and target count. Stream JSONL;
101
+ uniform row sampling is not uniform parent/query sampling.
102
+
103
+ `level` means the training category `high`/`mid`/`low`, not a WSI pyramid index.
104
+ MPP is microns per pixel; nominal RefPath magnification/MPP are approximate and
105
+ explicitly flagged. Unsupported metadata remains null.
106
+
107
+ ## Optional SegPath
108
+
109
+ Download only the independent SegPath package:
110
+
111
+ ```python
112
+ from huggingface_hub import snapshot_download
113
+
114
+ snapshot_download(
115
+ repo_id="xuxuxuxuxu/PathGrounding",
116
+ repo_type="dataset",
117
+ local_dir="/data/pathgrounding-download",
118
+ allow_patterns=["segpath/**", "tools/verify_segpath_package.py"],
119
+ )
120
+ ```
121
+
122
+ ```bash
123
+ python /data/pathgrounding-download/tools/verify_segpath_package.py \
124
+ /data/pathgrounding-download/segpath
125
+ export PYTHONPATH=/data/pathgrounding-download/segpath:$PYTHONPATH
126
+ ```
127
+
128
+ Use `AuxiliaryTrainingReader("/data/pathgrounding-download/segpath")` in a
129
+ separate reader/import context from the main package. The SegPath reader loads
130
+ images and annotations directly from eight native, uncompressed marker TARs;
131
+ no extraction is required. Reserve approximately 210 GiB plus download-cache
132
+ headroom. `segpath/release_manifest.json` gives the exact total and checksums.
133
+
134
+ Only official training patches are included. Targets are 8-connected semantic
135
+ mask regions, **not cell instances or WSI navigation paths**. Questions use full
136
+ labels. Known organs are retained; unknown organs are null. All rows record 40x,
137
+ approximate MPP `[0.25, 0.25]`, and training level `high`.
138
 
139
+ SegPath's `sampling_config.json` sets `enabled_by_default: false` and
140
+ `default_mix_probability: 0.0`. No combined manifest is provided. An explicitly
141
+ chosen future experiment should cap its contribution and sample marker, then
142
+ parent/query, then target, rather than concatenate rows and sample uniformly.
 
143
 
144
  ## Layout And Validation
145
 
146
  | Repository path | Contents |
147
  | --- | --- |
148
+ | `package/` | Main manifest, index, reader, quality policy, decisions, reports and provenance |
149
+ | `archives/` | Main parent/child images and per-parent annotations |
150
+ | `release_manifest.json` | Main-only inventory, counts, sizes and SHA-256 checksums |
151
+ | `tools/restore_package.py` | Main package checksum verification and restoration |
152
+ | `segpath/` | Independent optional SegPath manifest, index, TARs, reader and provenance |
153
+ | `segpath/release_manifest.json` | SegPath-only inventory, counts, sizes and checksums |
154
+ | `tools/verify_segpath_package.py` | SegPath checksums and sample loading check |
155
+
156
+ Both packages report `pass` with zero errors in their own `validation.json` and
157
+ `quality_validation.json`. The main export checks all 235,346 rows and 38,836
158
+ annotation views, with 700 deterministic crop-pixel samples. SegPath checks all
159
+ 2,193,058 rows and 105,864 annotation views, with 1,000 deterministic crop-pixel
160
+ rechecks; its source audit reconstructs every retained parent's original mask.
161
+ These automated audits are not a claim of a new manual or physician review.
162
+
163
+ The main package preserves historical source metadata showing SegPath excluded
164
+ from that build; this is intentional and does not invalidate the independent
165
+ validated `segpath/` release. Read each package's methods, quality policy,
166
+ filter results and provenance before training. Pin a Hub commit revision for
167
+ reproducible downloads.
archives/annotations-00000.tar CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:88cd521c4fb64ca027fea2f348bba39a314a55dad91b9a028e52361cdf243bd3
3
- size 285358080
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:31f467ba323acf29cface50a8b4debcee8581d6dd8a4e3a7eb53e56e3533410d
3
+ size 621434880
archives/images-child-00000.tar CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:57afef7147cf0ed1a9dcebe39734296fa63c0113543464c5a50193edadb33d18
3
- size 2048440320
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d95be1bbe37cb1b50302fab0ad70c378b15713217ed44e171d33506782c11295
3
+ size 2096660480
archives/images-child-00001.tar CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:845a3f3617372103eca01e72103cda2b116112686643ad0c528d49b250f9bc93
3
- size 2047016960
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:9cc4aaa79616260e7b69f3342e8686b96317150f838237586bb3146a94fa3ac4
3
+ size 2096005120
archives/images-child-00002.tar CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:dcbdaf71a64cd61962b4ac49dac48db9b2288926267385c6f64af75627bd1040
3
- size 2047539200
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:e4b6c71d5feadf3579747bd217fb1c87b9a9b05160bdefe19b908c5f8e4e4bf2
3
+ size 749475840
archives/images-parent-00000.tar CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:e27b645bbf3f983395ead2d0524c45fb17f57fbcb36109502c5e0eec66c77644
3
- size 2113556480
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:10cedc9b9bd6087e38f37061b9f8704f4dccc95a9d25ca6b812c74c15352f310
3
+ size 2145054720
archives/images-parent-00001.tar CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:59cf7588f1d0371b544ccec94f9fe3372696acdabf6aa3a5e2c3713693816256
3
- size 2018375680
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:be1911b72aa191ebbb2ea7afd4db20d00ffe01e314c07142d210fee3caba9bf0
3
+ size 2143447040
archives/images-parent-00002.tar CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:618d0e26ca2280d54d1df8b3a267eeedc8f21aed726440a5ee7a0ada17b52577
3
- size 2032537600
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:04460e45d72e7bbd914d0d2c30d80fe8fce4bcc9582fa434d3f87cfacfa6b2a7
3
+ size 2143764480
archives/images-parent-00003.tar CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:1a06d275a286de04736d7e6ae4d40737aaef71285e93170181b2dea872c6cd59
3
- size 2091427840
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:26b6df70d3ed02098f190ad0d6fc3afc0c6aa2c5096822fa2da150359d999262
3
+ size 2145372160
archives/images-parent-00004.tar CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:5eb09e69a6411709052b99cf688e9a9a6b7e5dfb675e4d14266280f72a310790
3
- size 2111078400
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:005b1b760006150e262061b732fdc7e3b9ec7e747a3fa9c308483425e129388d
3
+ size 2145392640
archives/images-parent-00005.tar CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:ad5eb1e0c6471eba51fad7942059b1145f164a06112a1228eb92bce667766d72
3
- size 2042163200
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:c797e619b833c0131d819dc3c96be1e11387eb68c665e4538d16d20dfe9b048d
3
+ size 2144901120
archives/images-parent-00006.tar CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:b40360fd6d41150a3659d21dd36eeb5205e2a5301515d26caf91d16e5c177450
3
- size 2119219200
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:718b978dfce729e170862eb4753e04816a8133ff30c06439d9a3573bfb6963bb
3
+ size 2144000000
archives/images-parent-00007.tar CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:507ae1b921bcf646540e682e58e119100fc4ac253a0fc6e16fbd7d57c86e91c0
3
- size 2056970240
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:0ebe805ace63f99933b11a0c69b925aa26af8a1a4efeb0f3cbf700529bff4716
3
+ size 2144081920
archives/images-parent-00008.tar CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:a20d863c331b202e7aef27138f69f6ec098bcbe882c1da2cff1908bdcbb6c141
3
- size 2096025600
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:003c18b4e612b01aa10a6cdf827b56a8cd181ea2ad89dbc5a4834af916ea0843
3
+ size 2145566720
archives/images-parent-00009.tar CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:9ae2434ee15be02fabc613843d40dfa0f79e496d29d7f2c9eb29f474748d7971
3
- size 2094417920
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b5652803d8ca5dc12942ce3ea9954856d186d1a498583818cff7a6bd0f07e04c
3
+ size 2145157120
archives/images-parent-00010.tar CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:d7d8228552fff70308a7b7e6a92d14bd0b850865ba575de9cd3f29ee6f4b1b65
3
- size 2023229440
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:6bc42614bdf7606fb0fa91ae33d99616ca57f679ecb293b2ed049921f711e2d2
3
+ size 1374894080
package/FILTER_RESULTS.md ADDED
@@ -0,0 +1,19 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # Quality Filter v1 Results
2
+
3
+ Status: automatically filtered; no manual/doctor review claimed.
4
+
5
+ | Dataset | Before | Retained | Excluded | Retained % |
6
+ | --- | ---: | ---: | ---: | ---: |
7
+ | bcss | 6,153 | 2,836 | 3,317 | 46.09 |
8
+ | lizard | 325,966 | 31,446 | 294,520 | 9.65 |
9
+ | midogpp | 8,008 | 8,008 | 0 | 100.00 |
10
+ | nucls | 35,848 | 32,538 | 3,310 | 90.77 |
11
+ | nuinsseg | 25,718 | 20,521 | 5,197 | 79.79 |
12
+ | pannuke | 187,831 | 111,605 | 76,226 | 59.42 |
13
+ | refpath_train | 28,908 | 28,392 | 516 | 98.22 |
14
+
15
+ Total: 235,346 / 618,432 retained pairs.
16
+ Parents: 38,836; annotation files: 38,836.
17
+
18
+ Overlapping reason counts and per-class counts are in quality_filter_report.json.
19
+ Every source row decision is in audit/row_decisions.jsonl.
package/METHODS.md ADDED
@@ -0,0 +1,216 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # Auxiliary Training Quality Filter v1
2
+
3
+ This document records the deterministic quality filtering used to make a
4
+ training-oriented derivative of `zoompath_training_v4`. It is a methods record,
5
+ not a clinical validation claim. Generation does not overwrite its unfiltered
6
+ input. Optional post-validation storage compaction promotes the filtered package
7
+ to the canonical local name and retains the complete original in a separate
8
+ verified backup, with unfiltered export metadata preserved for lineage audits.
9
+
10
+ ## Scope
11
+
12
+ The input is the validated portable export with 618,432 parent-child pairs from
13
+ RefPath train, PanNuke, NuInsSeg, NuCLS, BCSS, Lizard and MIDOG++. The filter
14
+ operates on source pixel dimensions and source annotations. It does not change
15
+ the original questions, organs, MPP estimates, levels, source labels or source
16
+ licenses. It does not use the benchmark test set as training data.
17
+
18
+ ## Parent image checks
19
+
20
+ For every source parent image:
21
+
22
+ - minimum parent short side: 256 pixels;
23
+ - maximum parent aspect ratio: 4:1;
24
+ - reject a blank or nearly uniform parent using a 128-pixel thumbnail;
25
+ - verify the decoded parent pixels against the source manifest SHA-256.
26
+
27
+ An extreme-white pixel has all RGB channels >=245; an extreme-black pixel has
28
+ all channels <=10. The blank-image screen rejects a thumbnail if their union
29
+ covers at least 99.5% of pixels and its grayscale standard deviation is <=5,
30
+ or if grayscale standard deviation is <=1 and the 90th percentile of
31
+ `max(R,G,B)-min(R,G,B)` is <=5. This is an
32
+ automated corruption/empty-image screen, not a tissue adequacy or stain-quality
33
+ assessment. Blur and stain variation are measured for review candidates only;
34
+ they are not automatic exclusion criteria in v1.
35
+
36
+ ## Target checks
37
+
38
+ Cell/nucleus targets in PanNuke, NuInsSeg, NuCLS and Lizard require:
39
+
40
+ - short side at least 12 pixels;
41
+ - bbox area at least 256 pixels squared;
42
+ - bbox aspect ratio at most 4:1;
43
+ - target short side at least 8 pixels after a reference resize with long side
44
+ 1024 pixels;
45
+ - target bbox not touching a source parent boundary;
46
+ - when a source instance mask area exists, mask fill
47
+ `mask_area / bbox_area >= 0.30`.
48
+
49
+ For Lizard, the instance mask must also have at least 90% of its pixels in its
50
+ largest 8-connected component. This removes source instance IDs that span
51
+ separated regions and otherwise create huge background-filled boxes. The source
52
+ mask area is checked before this decision. NuCLS source rectangles/polygons do
53
+ not contain a mask area; no artificial mask-fill value is inferred for them.
54
+
55
+ RefPath and BCSS region targets require:
56
+
57
+ - short side at least 64 pixels;
58
+ - bbox area at least 4,096 pixels squared;
59
+ - bbox aspect ratio at most 6:1;
60
+ - bbox area no more than 80% of the parent area;
61
+ - target short side at least 8 pixels under the reference resize.
62
+
63
+ BCSS targets remain semantic connected regions, not cell instances. RefPath
64
+ descriptions remain unchanged.
65
+
66
+ MIDOG++ boxes are source-centered 50-pixel detection windows, not tight cell
67
+ contours. They are not subjected to the nucleus mask-fill test. Each retained
68
+ MIDOG++ record gets a deterministic local parent crop of at most 1024 x 1024
69
+ pixels that fully contains the source window and prefers a 64-pixel margin when
70
+ possible. The bbox and all coordinates are translated into that local parent;
71
+ the original parent path, dimensions and bbox are retained in `source`.
72
+ The crop grid has 512-pixel stride, includes the final image edge and does not
73
+ pad or resize the source pixels. A SHA-256 hash of seed, record ID and a fixed
74
+ operation name chooses among containing crops (preferably with the margin).
75
+ This is a label-aware training crop, not a claim of label-free inference.
76
+ Targets fully contained in the crop have translated boxes. Targets intersecting
77
+ but not fully contained are clipped only for the ignore region, marked
78
+ `partial_after_parent_crop`, and never positive targets. Completely outside
79
+ targets are not visible and do not appear in the local annotation.
80
+
81
+ The reference visibility check uses
82
+ `min(child_width, child_height) * min(1, 1024 / max(parent_width, parent_height))`.
83
+ It does not credit artificial enlargement with new detail. The actual training
84
+ processor can differ; this reference rule is a reproducible quality screen, not
85
+ a substitute for checking eventual model preprocessing. Lizard parents are not
86
+ recropped in this version. RefPath parents are never recropped because their
87
+ source expressions can contain original-frame spatial relations.
88
+
89
+ ## Multi-target semantics
90
+
91
+ Quality filtering is applied to every source target in each parent annotation,
92
+ not only to the selected manifest row. A row is retained only if its selected
93
+ target is eligible. The output annotation preserves every source-supported
94
+ target with:
95
+
96
+ - `training_eligible: true` for positive training supervision;
97
+ - `training_eligible: false` and `quality_filter_reasons` for an excluded target.
98
+
99
+ Excluded matching targets are **not negatives**. For every retained row,
100
+ `target_count` counts only eligible matching targets in the current view and
101
+ `ignored_target_count` records matching targets excluded by this filter.
102
+ `source_target_count` preserves the original row's matching-answer count, which
103
+ can include out-of-view targets for a MIDOG++ local crop.
104
+ Training code should use eligible matches for the positive answer set and should
105
+ not convert ignored matches into background/no-target examples.
106
+
107
+ All unrecropped annotations preserve every source target, including excluded
108
+ ones. Local MIDOG++ annotations preserve every intersecting target as described
109
+ above. Filtering never merges instance IDs, classes or source expressions, and
110
+ never converts excluded rows into negative examples.
111
+
112
+ ## Dataset-specific policy
113
+
114
+ The source order and labels are unchanged. Lizard is filtered more strictly
115
+ because its source instance maps contain a small number of disconnected IDs,
116
+ and because a large fraction of its nuclear boxes are below a useful input
117
+ resolution. MIDOG++ is made more usable by local-parent recropping rather than
118
+ by pretending that a 6,000 x 5,000 parent should be directly resized to a model
119
+ input. No extra positive samples are invented by recropping.
120
+
121
+ SegPath remains excluded because its existing manifest has a malformed NUL line
122
+ and its source summary disagrees with the materialized rows. PathBind grounding
123
+ remains excluded because its available examples are official testA/testB data.
124
+ The legacy PathGen16M caption subset remains outside this spatial grounding
125
+ training package.
126
+
127
+ ## Reproducibility and audit files
128
+
129
+ `quality_filter_policy.json` is the machine-readable policy. The output stores:
130
+
131
+ - `quality_filter_report.json`: counts, retention, overlapping exclusion reasons,
132
+ per-class counts, source hashes and provenance;
133
+ - `audit/row_decisions.jsonl`: one decision and metrics per source row;
134
+ - `review/samples.json`: seeded samples for later manual review, explicitly not
135
+ claimed to have been reviewed;
136
+ - `review/low_focus_candidates.json`: deterministic blur-review candidates;
137
+ - `FILTER_RESULTS.md`: compact count table;
138
+ - `metadata/unfiltered_export_index.json` and
139
+ `metadata/unfiltered_export_validation.json`: input release records;
140
+ - `METHODS.md`: this protocol.
141
+
142
+ The implementation records its own SHA-256. The source manifest is checked both
143
+ before and after filtering. All source parent decoded hashes are verified, and
144
+ every retained source child is fully compared in RGB against its source parent
145
+ crop. MIDOG++ parents are exact source crops without interpolation; children
146
+ are unchanged. Lizard MAT-file SHA-256 values are recorded and rechecked by the
147
+ lineage audit. Run both validators:
148
+
149
+ ```bash
150
+ python scripts/filter_auxiliary_training_quality.py \
151
+ --source /path/to/auxiliary_training_v2/zoompath_training_v4 \
152
+ --original-root /path/to/auxiliary_training_v2 \
153
+ --output /path/to/auxiliary_training_v2/zoompath_training_v4_quality_filtered
154
+ python scripts/validate_auxiliary_training_export.py \
155
+ /path/to/auxiliary_training_v2/zoompath_training_v4_quality_filtered
156
+ python scripts/validate_auxiliary_quality_filter.py \
157
+ --source /path/to/auxiliary_training_v2/zoompath_training_v4 \
158
+ --original-root /path/to/auxiliary_training_v2 \
159
+ --output /path/to/auxiliary_training_v2/zoompath_training_v4_quality_filtered
160
+ ```
161
+
162
+ The output directory must not exist. The original source package remains
163
+ unchanged. Retained source images are hard-linked by default; `--copy` creates
164
+ independent copies instead. Do not modify any hard-linked images in place.
165
+ No train/val/test split is invented: original splits/folds and source groups
166
+ are retained, and any future split must keep a source group together, including
167
+ all of its MIDOG++ views.
168
+
169
+ Storage compaction is separate from the quality policy: it only removes
170
+ unfiltered local image names and backup-verified local caches after both
171
+ validators pass. Every backup path and size is checked; metadata and sampled
172
+ images receive SHA-256 comparison. Missing or differing backup directories
173
+ are preserved, not treated as safely deletable. The storage audit records the
174
+ canonical package, backup location, deleted/preserved directories and old export
175
+ metadata location. Deleting one hard link does not alter the retained image.
176
+ Historical input validation is archived evidence, not a claim that the archived
177
+ metadata-only directory still contains its original images.
178
+
179
+ For later manual inspection, six retained and six excluded rows per dataset
180
+ are selected by reservoir sampling with seed 20261010 (where available). The
181
+ contact sheets show both parent context with a target box and an enlarged
182
+ target preview. Enlargement is display-only. The lower 1% thumbnail focus
183
+ scores per dataset are exported as review candidates. Neither operation claims
184
+ that a person reviewed the samples. The optional `sampling_config.json`
185
+ recommends dataset/parent/query-aware sampling with Lizard probability 0.05;
186
+ these sampling weights are not applied by the export, and no training run is
187
+ claimed here.
188
+
189
+ ## Paper Methods Template
190
+
191
+ We constructed an auxiliary single-step pathology grounding training set from
192
+ seven source collections. Quality screening was deterministic and used separate
193
+ rules for nuclear-instance and tissue-region annotations. We excluded extremely
194
+ small or elongated parent images and targets, boundary-truncated nuclear
195
+ instances, low-fill instance boxes when segmentation masks were available,
196
+ and Lizard instances with less than 90% of their mask pixels in the largest
197
+ 8-connected component. We additionally required an 8-pixel target short side
198
+ under a reference long-edge-1024 downscale. MIDOG++ source detection windows
199
+ were retained in exact-pixel 1024-pixel local parent crops with translated
200
+ annotations; original-frame RefPath expressions were not recropped. Excluded
201
+ matching targets were preserved as ignored alternatives rather than negative
202
+ examples. Source questions, available organ/scale metadata, original split
203
+ identifiers and licensing provenance were retained. The initial set contained
204
+ 618,432 pairs; report the retained count from FILTER_RESULTS.md, along with
205
+ per-source retention and the implemented threshold table. Screening and pixel
206
+ consistency checks do not imply pathologist review; any subsequent manual
207
+ review must be described separately.
208
+
209
+ ## Limitations
210
+
211
+ The thresholds are engineering thresholds for auxiliary training, not
212
+ pathologist-defined inclusion criteria. They do not establish that every
213
+ retained crop is diagnostically useful, that every source annotation is correct,
214
+ or that the source collections are patient-independent. A later paper should
215
+ report the policy ID, source and output counts, class counts, exclusion reasons,
216
+ and whether the seeded review samples were manually inspected.
package/README.md CHANGED
@@ -1,217 +1,93 @@
1
- # ZoomPath Auxiliary Training v4
2
-
3
- This is a portable **single-step parent-child grounding training package**.
4
- It references the v4 benchmark's image/box/query conventions, but is not a
5
- Z1-Z12 benchmark, a WSI trajectory dataset, or a raw WSI release.
6
- The v4 benchmark's reported doctor review does not apply to this auxiliary package.
7
-
8
- ## Contents
9
-
10
- | Path | Contents |
11
- | --- | --- |
12
- | `manifest.jsonl` | One JSON object per selected source target/crop |
13
- | `index.json` | Dataset counts, metadata coverage, manifest checksum |
14
- | `images/parent/` | Input images, stored once per decoded pixel identity |
15
- | `images/child/` | Lossless target crops, without resizing |
16
- | `annotations/<dataset>/` | All source targets for each input parent |
17
- | `training_data.py` | Streaming reader and image/valid-target loader |
18
- | `validation.json` | Export audit with explicit pixel-check scope |
19
- | `metadata/` | Original source metadata, licenses, index and validation reports |
20
-
21
- All image and annotation paths in `manifest.jsonl` are **relative to this directory**.
22
- Historical absolute paths in `metadata/` and the `source_*` provenance fields of
23
- `index.json` are not used to load training data. Transfer this entire directory
24
- to another machine; no source image directory or original absolute path is required.
25
-
26
- ## Included Data
27
-
28
- | Source | Parent-child pairs |
29
- | --- | ---: |
30
- | RefPath train | 28,908 |
31
- | PanNuke | 187,831 |
32
- | NuInsSeg | 25,718 |
33
- | NuCLS | 35,848 |
34
- | BCSS | 6,153 |
35
- | Lizard | 325,966 |
36
- | MIDOGpp | 8,008 |
37
- | Total | 618,432 |
38
-
39
- Only the seven sources in the existing pixel-validated `training_index.json`
40
- are included. SegPath is excluded because its source manifest fails validation
41
- and its current row count disagrees with its generation summary. PathBind
42
- official testA/testB examples are not repurposed for training. PathGen16M is
43
- outside this spatial grounding build. No original files were removed or repaired.
44
-
45
- `partition` is `training`. `source_split` preserves the upstream split/fold.
46
- No artificial train/val/test split is invented. PanNuke and Lizard
47
- folds and NuInsSeg's unspecified split remain explicitly recorded. Keep all
48
- targets and questions for the same parent together in any later split;
49
- `source.source_group_id` and `source.source_group_field` carry the available grouping.
50
- The original overlap audit is copied, not a new claim of patient-level independence.
51
-
52
- ## Fields And Coordinates
53
-
54
- - `question`: Original training question. `query` is an alias.
55
- - `expression`: Original source description or class label. Do not rewrite it
56
- when applying `valid_targets_filter`.
57
- - `parent_image` and `child_image`: Relative path, `[width, height]`, and optional MPP/level.
58
- - `child_bbox_in_parent`: Integer `x/y/w/h` in the original input parent pixels.
59
- - `child_bbox_xyxy_in_parent`: `[x1, y1, x2, y2]`, top-left origin, half-open edges.
60
- The child equals `parent.crop((x1, y1, x2, y2))` in decoded RGB pixels.
61
- - `organ`: Normalized source organ/anatomical tissue site, or `null` if unsupported.
62
- NuInsSeg muscle/adipose/bone sites remain explicit tissue/site names.
63
- A generic tumor diagnosis or melanoma label alone is not converted to an organ.
64
- - `organ_source`: Provenance of organ/site metadata.
65
- - `parent_image.mpp`: `[microns_per_pixel_x, microns_per_pixel_y]` or `null`.
66
- BCSS uses its source filename's resampling MPP. MIDOGpp uses TIFF resolution
67
- tags only when both axes and physical units are present; these values are
68
- preserved. When only magnification is available, use the nominal training
69
- mapping below. The unresized child has the same MPP as its parent.
70
- - `parent_image.mpp_is_approximate`: `true` for nominal MPP assigned by the
71
- magnification mapping, `false` for retained source MPP (or no MPP).
72
- - `magnification`: Source or estimated equivalent training magnification;
73
- also stored on each image with its source and approximation flag.
74
- - `parent_image.level`: Training scale category `high`, `mid`, `low`, or `null`.
75
- **This is not a WSI pyramid index.** `source_level` is a separate field for
76
- a source pyramid index if one was explicitly available.
77
- - `annotation_kind`: Source annotation semantics. BCSS boxes enclose semantic
78
- connected regions, not cell instances. MIDOGpp boxes are source detection
79
- windows, not tight cell contours.
80
- - `license`, `license_source`, `source`, `source_extra`: Upstream provenance and restrictions.
81
-
82
- ## Nominal Training Scales
83
-
84
- These approximate conventions are for optional auxiliary training, not scanner
85
- calibration or precision benchmark measurements. Nominal MPP is `10 / magnification`.
86
-
87
- | Magnification | Nominal MPP | Training level |
88
- | --- | ---: | --- |
89
- | 40x | 0.25 | high |
90
- | 20x | 0.50 | high |
91
- | 10x | 1.0 | mid |
92
- | 5x | 2.0 | mid |
93
- | 2.5x | 4.0 | low |
94
- | 1x | 10.0 | low |
95
-
96
- For RefPath train, assign a **heuristic** magnification from the original
97
- parent image's longest side: 1024 pixels -> 40x, 2048 pixels -> 20x.
98
- This follows the released testA/testB size pattern but is not a verified
99
- per-image train magnification annotation. Both magnification and nominal MPP
100
- are explicitly flagged approximate; all these records are `high`.
101
- Do not infer scale from the selected child's smaller crop size.
102
-
103
- For retained BCSS/MIDOGpp source MPP, select the nearest nominal MPP in log space
104
- to obtain an equivalent magnification and training level, without rounding or
105
- overwriting the physical MPP. Other records with no scale evidence remain `null`.
106
- The mapping and coverage counts are recorded in `index.json`.
107
-
108
- ## Multiple Valid Answers
109
-
110
- An `annotations_path` file contains **all targets in the parent**, not just those
111
- matching this query. Apply `valid_targets_filter` (an exact `label` or `expression`
112
- match) to select the valid alternatives. Their number equals `target_count`.
113
- The row's selected crop/box is one valid answer, not necessarily the only one.
114
- Do not treat unselected matching targets as negatives. Identical image/question
115
- inputs can have different selected crops; these are legitimate alternative
116
- targets. A multi-target trainer should obtain all boxes through `valid_targets()`.
117
- For one-target sampling, sample from that same matching set.
118
-
119
- The manifest has one row per selected source target. Large target sets consequently
120
- produce more rows; row-uniform sampling is not parent/query-uniform sampling.
121
- Multiple descriptions may refer to the same box. Preserve description semantics
122
- and source labels rather than merging unrelated questions.
123
 
124
- ## Loading
 
 
 
 
125
 
126
- Pillow is required only for loading images. The manifest and target reader use
127
- the Python standard library. Put the package directory on `PYTHONPATH`, for example:
 
128
 
129
- ```bash
130
- export PYTHONPATH=/data/zoompath_training_v4:$PYTHONPATH
131
- ```
132
-
133
- ```python
134
- from training_data import AuxiliaryTrainingReader
135
-
136
- reader = AuxiliaryTrainingReader('/data/zoompath_training_v4')
137
- row = next(reader.iter_records(dataset='pannuke'))
138
- sample = reader.load_pair(row)
139
- parent = sample['parent_image'] # PIL RGB image
140
- child = sample['child_image']
141
- question = sample['question']
142
- selected_box = sample['child_bbox_xyxy_in_parent']
143
- all_valid_boxes = sample['valid_target_bboxes_xyxy_in_parent']
144
- organ, mpp, level = sample['organ'], sample['mpp'], sample['level']
145
- ```
146
 
147
- Stream `manifest.jsonl` rather than loading the entire file into memory.
148
- If images are resized or cropped by training transforms, transform every target
149
- box consistently. If image sizes change, source MPP must also be adjusted.
 
150
 
151
- ## Storage And Restrictions
 
 
 
152
 
153
- The local export uses **hard links**, not symlinks. It does not duplicate image
154
- data blocks and can be transferred independently. Do not edit image files in
155
- place: local hard links share their contents with the original source files.
156
- Metadata/annotations are independent copies. `--copy` creates independent image
157
- files when exporting to another filesystem.
158
-
159
- This package does not grant new redistribution rights. Source restrictions are
160
- retained per row and in `metadata/<dataset>/source.json`. RefPath is gated and
161
- is not assumed redistributable. The Hugging Face copy is intended for the private
162
- repository `xuxuxuxuxu/PathGrounding`; do not make it public or mirror it into a
163
- public dataset without checking every upstream license.
164
-
165
- ## Download From Hugging Face
166
-
167
- The repository is private, so authenticate with an account that has access:
168
 
169
  ```bash
170
- pip install -U huggingface_hub
171
- hf auth login
172
- hf download xuxuxuxuxu/PathGrounding \
173
- --repo-type dataset \
174
- --local-dir /data/pathgrounding-download
175
- python /data/pathgrounding-download/tools/restore_package.py \
176
- /data/pathgrounding-download /data/zoompath_training_v4
177
  ```
178
 
179
- Or download from Python and then use the package-relative paths in the manifest:
180
-
181
  ```python
182
- from huggingface_hub import snapshot_download
183
 
184
- root = snapshot_download(
185
- repo_id="xuxuxuxuxu/PathGrounding",
186
- repo_type="dataset",
187
- local_dir="/data/pathgrounding-download",
188
- )
 
189
  ```
190
 
191
- The repository preserves the complete package. Images and annotations are in
192
- uncompressed TAR shards to avoid uploading roughly 686,000 individual files;
193
- manifest, reader and metadata are in `package/`. The restore command verifies
194
- every shard's SHA-256 checksum and restores the original relative paths without
195
- resizing or changing any image, annotation or question. It requires Python 3.10+.
 
 
 
 
 
 
 
196
 
197
- The full package is about 54 GB. Keep roughly 115 GB of free disk space when
198
- retaining both the download and restored package. `snapshot_download` can resume
199
- an interrupted transfer. The full export validator mentioned below belongs to
200
- the ZoomPath code repository, not the downloadable data package.
201
 
202
- ## Rebuild And Validate
203
 
204
- From the ZoomPath code repository, using its existing environment:
 
205
 
206
  ```bash
207
- python scripts/export_auxiliary_training_v4.py --root /path/to/auxiliary_training_v2 --output /path/to/new-export
208
- python scripts/validate_auxiliary_training_export.py /path/to/new-export
 
 
 
209
  ```
210
 
211
- The exporter verifies that source manifests still match their recorded pixel
212
- validation checksums and retains all targets in each parent annotation file.
213
- The export validator checks every row's paths, box bounds, query target coverage,
214
- selected-target linkage and metadata consistency. By default it checks crop
215
- pixels and decoded parent hashes on 100 deterministic random samples per dataset.
216
- The report separates that sample check from the upstream full pixel validation.
217
- Use `--all-pixels` for a full export pixel check.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # ZoomPath Auxiliary Training v4: Quality-Filtered Derivative
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
2
 
3
+ This package is a deterministic, automatically quality-filtered derivative of
4
+ the validated ZoomPath auxiliary parent-child grounding export. It is intended
5
+ for additional training, not as a clinically reviewed benchmark. A local
6
+ storage compaction may replace the working unfiltered export with this package;
7
+ the complete original collection remains in the separately verified backup.
8
 
9
+ Read `METHODS.md` before using the data. The exact machine-readable thresholds
10
+ are in `quality_filter_policy.json`; source-row decisions are in
11
+ `audit/row_decisions.jsonl`; aggregate counts are in `quality_filter_report.json`.
12
 
13
+ ## Important semantics
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
14
 
15
+ The package keeps source-supported alternative answers in each annotation file.
16
+ `training_eligible: true` targets are the positive training answers. Targets
17
+ with `training_eligible: false` were excluded for quality reasons and are **not
18
+ negative examples**. Use `target_count` and the reader's valid-target helper.
19
 
20
+ The questions, source descriptions, organ names, MPP/level metadata and source
21
+ provenance are retained. MIDOG++ has deterministic local parent crops no larger
22
+ than 1024 x 1024; the original parent geometry is preserved in each row's
23
+ `source` field.
24
 
25
+ ## Loading
 
 
 
 
 
 
 
 
 
 
 
 
 
 
26
 
27
  ```bash
28
+ export PYTHONPATH=/path/to/zoompath_training_v4:$PYTHONPATH
 
 
 
 
 
 
29
  ```
30
 
 
 
31
  ```python
32
+ from training_data import AuxiliaryTrainingReader
33
 
34
+ reader = AuxiliaryTrainingReader("/path/to/zoompath_training_v4")
35
+ row = next(reader.iter_records(dataset="pannuke"))
36
+ sample = reader.load_pair(row)
37
+ positive_boxes = sample["valid_target_bboxes_xyxy_in_parent"]
38
+ ignored_boxes = sample["ignored_target_bboxes_xyxy_in_parent"]
39
+ assert sample["ignored_targets_are_not_negatives"]
40
  ```
41
 
42
+ Boxes use source-native integer pixel XYXY with half-open edges. Stream the
43
+ manifest; do not load every row into RAM. Do not use a legacy reader that treats
44
+ all matching targets as eligible. Ignored boxes should not create negative
45
+ labels or penalties in the training loss. If the training system cannot support
46
+ ignore regions, use a compatible objective or exclude affected parent/query
47
+ inputs rather than silently relabeling their ignored targets as background.
48
+
49
+ `sampling_config.json` contains optional dataset mixture probabilities (Lizard
50
+ 0.05) and parent/query-aware sampling guidance; no sampler is applied by the
51
+ export. Do not split different local crops from the same MIDOG++ source image
52
+ across training and validation sets. Source folds and grouping fields remain
53
+ available; no new train/val/test partition is created by this filter.
54
 
55
+ The output uses hard links for unchanged source images and new PNG files for
56
+ MIDOG++ local parents. This is independently transferable, but local hard links
57
+ share storage blocks with the original export: do not edit them in place.
58
+ Unlinking an old unfiltered image does not damage its retained hard link.
59
 
60
+ ## Validation
61
 
62
+ The package is generated separately from the original export and should be
63
+ validated with the repository's export validator before training:
64
 
65
  ```bash
66
+ python scripts/validate_auxiliary_training_export.py /path/to/zoompath_training_v4_quality_filtered
67
+ python scripts/validate_auxiliary_quality_filter.py \
68
+ --source /path/to/auxiliary_training_v2/zoompath_training_v4 \
69
+ --original-root /path/to/auxiliary_training_v2 \
70
+ --output /path/to/zoompath_training_v4_quality_filtered
71
  ```
72
 
73
+ The package is automatically filtered and has not received doctor/pathologist
74
+ manual review. The `review/` directory contains deterministic candidates for a
75
+ later audit only.
76
+
77
+ ## Local storage compaction
78
+
79
+ The canonical local training package is `auxiliary_training_v2/zoompath_training_v4`.
80
+ Root-level `training_index.json` and `training_manifest.jsonl` are convenience
81
+ links to this filtered package, not the old unfiltered absolute-path schema.
82
+ Only this package is a training entry point; any preserved source/cache
83
+ directories are not additional eligible training records.
84
+
85
+ `storage_compaction.json` records backup inventory checks, deleted directories
86
+ and directories preserved because the backup was missing or different. Backup
87
+ verification checks every relative path and file size plus metadata and sampled
88
+ image hashes; it does not claim exhaustive source-image byte comparison.
89
+ The old export's manifest, annotations and validation history remain in the
90
+ external audit directory without its image tree, for later lineage checks.
91
+ After compaction, pass that metadata directory as `--source` and the original
92
+ backup root as `--original-root` to `validate_auxiliary_quality_filter.py`.
93
+ The storage operation does not update the Hugging Face release.
package/audit/row_decisions.jsonl ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:4fad5bf99b648d11f30feacfeeda9d3e27d5651c84eaf2fdab20327e381d0d32
3
+ size 374926103
package/index.json CHANGED
@@ -2,86 +2,86 @@
2
  "schema_version": "zoompath.auxiliary_training.export.v1",
3
  "data_role": "auxiliary_training",
4
  "benchmark_inclusion": false,
5
- "source_root": "/storage/ssd1/jiahao/ZoomPath/auxiliary_training_v2",
6
- "source_manifest": "/storage/ssd1/jiahao/ZoomPath/auxiliary_training_v2/training_manifest.jsonl",
7
  "source_manifest_sha256": "d3a6324a1a53a6c95432a288591830008b3dfe4eea7342bdf8d037299fc79706",
8
  "manifest": "manifest.jsonl",
9
- "manifest_sha256": "878b7e84d153a63006539477a26519d775a10358290c33406c69c1b80354c25c",
10
- "pair_count": 618432,
11
- "unique_parent_count": 34193,
12
- "annotation_file_count": 34193,
13
- "status": "exported; see validation.json for export validation",
14
  "manual_quality_review": "not_claimed_for_auxiliary_training",
15
  "dataset_counts": {
16
- "bcss": 6153,
17
- "lizard": 325966,
18
  "midogpp": 8008,
19
- "nucls": 35848,
20
- "nuinsseg": 25718,
21
- "pannuke": 187831,
22
- "refpath_train": 28908
23
  },
24
  "organ_counts": {
25
- "Adipose tissue": 466,
26
- "Adrenal gland": 6873,
27
- "Bile duct": 8960,
28
- "Bladder": 3155,
29
- "Brain": 111,
30
- "Breast": 92592,
31
- "Cerebellum": 421,
32
- "Cervix": 7226,
33
- "Colon": 35333,
34
- "Colon and rectum": 325966,
35
- "Epiglottis": 131,
36
- "Esophagus": 10961,
37
- "Femur": 360,
38
- "Head and neck": 7715,
39
- "Heart": 682,
40
- "Jejunum": 671,
41
- "Kidney": 6565,
42
- "Liver": 6378,
43
- "Lung": 7864,
44
- "Muscle": 214,
45
- "Ovary": 3825,
46
- "Pancreas": 6241,
47
- "Peritoneum": 386,
48
- "Placenta": 1632,
49
- "Prostate": 4131,
50
- "Rectum": 329,
51
- "Salivary gland": 2672,
52
- "Skin": 8832,
53
- "Spleen": 4637,
54
- "Stomach": 6301,
55
- "Testis": 5022,
56
- "Thymus": 1124,
57
- "Thyroid": 4859,
58
- "Tongue": 1243,
59
- "Tonsil": 930,
60
- "Umbilical cord": 77,
61
- "Uterus": 8686,
62
- "unknown": 34861
63
  },
64
  "mpp_counts": {
65
- "present": 43069,
66
- "missing": 575363
67
  },
68
  "level_counts": {
69
- "present": 43069,
70
- "missing": 575363
71
  },
72
  "magnification_counts": {
73
- "20.0": 22234,
74
- "40.0": 20835,
75
- "missing": 575363
76
  },
77
  "mpp_approximation_counts": {
78
- "approximate": 28908,
79
- "missing": 575363,
80
- "source_metadata": 14161
81
  },
82
  "scale_level_counts": {
83
- "high": 43069,
84
- "missing": 575363
85
  },
86
  "scale_convention": {
87
  "nominal_mpp_formula": "10 / magnification; not scanner-calibrated",
@@ -144,5 +144,10 @@
144
  "segpath": "not in training_index ready datasets; current source validation is not a pass",
145
  "pathbind_grounding": "official testA/testB evaluation data",
146
  "pathgen16m": "outside spatial auxiliary training build"
147
- }
 
 
 
 
 
148
  }
 
2
  "schema_version": "zoompath.auxiliary_training.export.v1",
3
  "data_role": "auxiliary_training",
4
  "benchmark_inclusion": false,
5
+ "source_root": "/jhcnas3/jiahao/ZoomPath/auxiliary_training_v2",
6
+ "source_manifest": "/jhcnas3/jiahao/ZoomPath/auxiliary_training_v2/training_manifest.jsonl",
7
  "source_manifest_sha256": "d3a6324a1a53a6c95432a288591830008b3dfe4eea7342bdf8d037299fc79706",
8
  "manifest": "manifest.jsonl",
9
+ "manifest_sha256": "eeda70abfec170771f9084d2330011dcfa8443c2132ea8a2e8a576296e78fa85",
10
+ "pair_count": 235346,
11
+ "unique_parent_count": 38836,
12
+ "annotation_file_count": 38836,
13
+ "status": "filtered_not_manually_reviewed",
14
  "manual_quality_review": "not_claimed_for_auxiliary_training",
15
  "dataset_counts": {
16
+ "bcss": 2836,
17
+ "lizard": 31446,
18
  "midogpp": 8008,
19
+ "nucls": 32538,
20
+ "nuinsseg": 20521,
21
+ "pannuke": 111605,
22
+ "refpath_train": 28392
23
  },
24
  "organ_counts": {
25
+ "Adipose tissue": 399,
26
+ "Adrenal gland": 4506,
27
+ "Bile duct": 5516,
28
+ "Bladder": 1929,
29
+ "Brain": 78,
30
+ "Breast": 68310,
31
+ "Cerebellum": 338,
32
+ "Cervix": 4643,
33
+ "Colon": 18689,
34
+ "Colon and rectum": 31446,
35
+ "Epiglottis": 97,
36
+ "Esophagus": 6817,
37
+ "Femur": 272,
38
+ "Head and neck": 4547,
39
+ "Heart": 516,
40
+ "Jejunum": 513,
41
+ "Kidney": 3775,
42
+ "Liver": 3881,
43
+ "Lung": 3664,
44
+ "Muscle": 175,
45
+ "Ovary": 2461,
46
+ "Pancreas": 4317,
47
+ "Peritoneum": 291,
48
+ "Placenta": 1291,
49
+ "Prostate": 2639,
50
+ "Rectum": 251,
51
+ "Salivary gland": 2192,
52
+ "Skin": 6227,
53
+ "Spleen": 3828,
54
+ "Stomach": 3932,
55
+ "Testis": 3280,
56
+ "Thymus": 947,
57
+ "Thyroid": 3189,
58
+ "Tongue": 927,
59
+ "Tonsil": 710,
60
+ "Umbilical cord": 41,
61
+ "Uterus": 4497,
62
+ "unknown": 34215
63
  },
64
  "mpp_counts": {
65
+ "missing": 196110,
66
+ "present": 39236
67
  },
68
  "level_counts": {
69
+ "missing": 196110,
70
+ "present": 39236
71
  },
72
  "magnification_counts": {
73
+ "20.0": 18640,
74
+ "40.0": 20596,
75
+ "missing": 196110
76
  },
77
  "mpp_approximation_counts": {
78
+ "approximate": 28392,
79
+ "missing": 196110,
80
+ "source_metadata": 10844
81
  },
82
  "scale_level_counts": {
83
+ "high": 39236,
84
+ "missing": 196110
85
  },
86
  "scale_convention": {
87
  "nominal_mpp_formula": "10 / magnification; not scanner-calibrated",
 
144
  "segpath": "not in training_index ready datasets; current source validation is not a pass",
145
  "pathbind_grounding": "official testA/testB evaluation data",
146
  "pathgen16m": "outside spatial auxiliary training build"
147
+ },
148
+ "quality_filter": "auxiliary_quality_filter_v1",
149
+ "source_export_manifest_sha256": "878b7e84d153a63006539477a26519d775a10358290c33406c69c1b80354c25c",
150
+ "source_export_index_sha256": "a9266b8ef5fcb027a7a7d32638b2f2b70dc9290a26046df68859e07f067ddc78",
151
+ "generated_at": "2026-10-10T03:44:28+08:00",
152
+ "source_export_metadata_root": "/storage/ssd1/jiahao/ZoomPath/audit/auxiliary_quality_filter_20261010/unfiltered_export_metadata"
153
  }
package/manifest.jsonl CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:878b7e84d153a63006539477a26519d775a10358290c33406c69c1b80354c25c
3
- size 1446858187
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:eeda70abfec170771f9084d2330011dcfa8443c2132ea8a2e8a576296e78fa85
3
+ size 594990807
package/metadata/unfiltered_export_index.json ADDED
@@ -0,0 +1,148 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "schema_version": "zoompath.auxiliary_training.export.v1",
3
+ "data_role": "auxiliary_training",
4
+ "benchmark_inclusion": false,
5
+ "source_root": "/storage/ssd1/jiahao/ZoomPath/auxiliary_training_v2",
6
+ "source_manifest": "/storage/ssd1/jiahao/ZoomPath/auxiliary_training_v2/training_manifest.jsonl",
7
+ "source_manifest_sha256": "d3a6324a1a53a6c95432a288591830008b3dfe4eea7342bdf8d037299fc79706",
8
+ "manifest": "manifest.jsonl",
9
+ "manifest_sha256": "878b7e84d153a63006539477a26519d775a10358290c33406c69c1b80354c25c",
10
+ "pair_count": 618432,
11
+ "unique_parent_count": 34193,
12
+ "annotation_file_count": 34193,
13
+ "status": "exported; see validation.json for export validation",
14
+ "manual_quality_review": "not_claimed_for_auxiliary_training",
15
+ "dataset_counts": {
16
+ "bcss": 6153,
17
+ "lizard": 325966,
18
+ "midogpp": 8008,
19
+ "nucls": 35848,
20
+ "nuinsseg": 25718,
21
+ "pannuke": 187831,
22
+ "refpath_train": 28908
23
+ },
24
+ "organ_counts": {
25
+ "Adipose tissue": 466,
26
+ "Adrenal gland": 6873,
27
+ "Bile duct": 8960,
28
+ "Bladder": 3155,
29
+ "Brain": 111,
30
+ "Breast": 92592,
31
+ "Cerebellum": 421,
32
+ "Cervix": 7226,
33
+ "Colon": 35333,
34
+ "Colon and rectum": 325966,
35
+ "Epiglottis": 131,
36
+ "Esophagus": 10961,
37
+ "Femur": 360,
38
+ "Head and neck": 7715,
39
+ "Heart": 682,
40
+ "Jejunum": 671,
41
+ "Kidney": 6565,
42
+ "Liver": 6378,
43
+ "Lung": 7864,
44
+ "Muscle": 214,
45
+ "Ovary": 3825,
46
+ "Pancreas": 6241,
47
+ "Peritoneum": 386,
48
+ "Placenta": 1632,
49
+ "Prostate": 4131,
50
+ "Rectum": 329,
51
+ "Salivary gland": 2672,
52
+ "Skin": 8832,
53
+ "Spleen": 4637,
54
+ "Stomach": 6301,
55
+ "Testis": 5022,
56
+ "Thymus": 1124,
57
+ "Thyroid": 4859,
58
+ "Tongue": 1243,
59
+ "Tonsil": 930,
60
+ "Umbilical cord": 77,
61
+ "Uterus": 8686,
62
+ "unknown": 34861
63
+ },
64
+ "mpp_counts": {
65
+ "present": 43069,
66
+ "missing": 575363
67
+ },
68
+ "level_counts": {
69
+ "present": 43069,
70
+ "missing": 575363
71
+ },
72
+ "magnification_counts": {
73
+ "20.0": 22234,
74
+ "40.0": 20835,
75
+ "missing": 575363
76
+ },
77
+ "mpp_approximation_counts": {
78
+ "approximate": 28908,
79
+ "missing": 575363,
80
+ "source_metadata": 14161
81
+ },
82
+ "scale_level_counts": {
83
+ "high": 43069,
84
+ "missing": 575363
85
+ },
86
+ "scale_convention": {
87
+ "nominal_mpp_formula": "10 / magnification; not scanner-calibrated",
88
+ "level_meaning": "training scale category high/mid/low, not WSI pyramid index",
89
+ "magnification_mapping": {
90
+ "40.0": {
91
+ "mpp": [
92
+ 0.25,
93
+ 0.25
94
+ ],
95
+ "level": "high"
96
+ },
97
+ "20.0": {
98
+ "mpp": [
99
+ 0.5,
100
+ 0.5
101
+ ],
102
+ "level": "high"
103
+ },
104
+ "10.0": {
105
+ "mpp": [
106
+ 1.0,
107
+ 1.0
108
+ ],
109
+ "level": "mid"
110
+ },
111
+ "5.0": {
112
+ "mpp": [
113
+ 2.0,
114
+ 2.0
115
+ ],
116
+ "level": "mid"
117
+ },
118
+ "2.5": {
119
+ "mpp": [
120
+ 4.0,
121
+ 4.0
122
+ ],
123
+ "level": "low"
124
+ },
125
+ "1.0": {
126
+ "mpp": [
127
+ 10.0,
128
+ 10.0
129
+ ],
130
+ "level": "low"
131
+ }
132
+ },
133
+ "refpath_train": "approximate: parent longest side 1024 -> 40x; 2048 -> 20x",
134
+ "existing_mpp": "preserve source metadata; classify into nearest nominal training scale"
135
+ },
136
+ "image_layout": {
137
+ "parents": "images/parent",
138
+ "children": "images/child"
139
+ },
140
+ "annotation_layout": "annotations/<dataset>/*.json",
141
+ "path_policy": "all manifest image and annotation paths are relative to this directory",
142
+ "materialization": "hardlinks; do not edit image files in place",
143
+ "excluded": {
144
+ "segpath": "not in training_index ready datasets; current source validation is not a pass",
145
+ "pathbind_grounding": "official testA/testB evaluation data",
146
+ "pathgen16m": "outside spatial auxiliary training build"
147
+ }
148
+ }
package/metadata/unfiltered_export_validation.json ADDED
@@ -0,0 +1,87 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "schema_version": "zoompath.auxiliary_training.export.validation.v1",
3
+ "status": "pass",
4
+ "manifest": "manifest.jsonl",
5
+ "manifest_sha256": "878b7e84d153a63006539477a26519d775a10358290c33406c69c1b80354c25c",
6
+ "row_count": 618432,
7
+ "dataset_counts": {
8
+ "bcss": 6153,
9
+ "lizard": 325966,
10
+ "midogpp": 8008,
11
+ "nucls": 35848,
12
+ "nuinsseg": 25718,
13
+ "pannuke": 187831,
14
+ "refpath_train": 28908
15
+ },
16
+ "annotation_file_count": 34193,
17
+ "unique_parent_count": 34193,
18
+ "multi_valid_target_rows": 594683,
19
+ "organ_counts": {
20
+ "Adipose tissue": 466,
21
+ "Adrenal gland": 6873,
22
+ "Bile duct": 8960,
23
+ "Bladder": 3155,
24
+ "Brain": 111,
25
+ "Breast": 92592,
26
+ "Cerebellum": 421,
27
+ "Cervix": 7226,
28
+ "Colon": 35333,
29
+ "Colon and rectum": 325966,
30
+ "Epiglottis": 131,
31
+ "Esophagus": 10961,
32
+ "Femur": 360,
33
+ "Head and neck": 7715,
34
+ "Heart": 682,
35
+ "Jejunum": 671,
36
+ "Kidney": 6565,
37
+ "Liver": 6378,
38
+ "Lung": 7864,
39
+ "Muscle": 214,
40
+ "Ovary": 3825,
41
+ "Pancreas": 6241,
42
+ "Peritoneum": 386,
43
+ "Placenta": 1632,
44
+ "Prostate": 4131,
45
+ "Rectum": 329,
46
+ "Salivary gland": 2672,
47
+ "Skin": 8832,
48
+ "Spleen": 4637,
49
+ "Stomach": 6301,
50
+ "Testis": 5022,
51
+ "Thymus": 1124,
52
+ "Thyroid": 4859,
53
+ "Tongue": 1243,
54
+ "Tonsil": 930,
55
+ "Umbilical cord": 77,
56
+ "Uterus": 8686,
57
+ "unknown": 34861
58
+ },
59
+ "mpp_counts": {
60
+ "present": 43069,
61
+ "missing": 575363
62
+ },
63
+ "level_counts": {
64
+ "present": 43069,
65
+ "missing": 575363
66
+ },
67
+ "magnification_counts": {
68
+ "20.0": 22234,
69
+ "40.0": 20835,
70
+ "missing": 575363
71
+ },
72
+ "mpp_approximation_counts": {
73
+ "approximate": 28908,
74
+ "missing": 575363,
75
+ "source_metadata": 14161
76
+ },
77
+ "scale_level_counts": {
78
+ "high": 43069,
79
+ "missing": 575363
80
+ },
81
+ "validation_scope": "all rows: paths, unique IDs, bounds, query coverage, source target linkage and metadata; pixels per pixel_check_mode",
82
+ "pixel_check_mode": "deterministic_sample",
83
+ "pixel_checked_rows": 700,
84
+ "sample_size_per_dataset": 100,
85
+ "error_count": 0,
86
+ "errors": []
87
+ }
package/quality_filter_policy.json ADDED
@@ -0,0 +1,75 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "policy_id": "auxiliary_quality_filter_v1",
3
+ "seed": 20261010,
4
+ "parent": {
5
+ "min_short_side": 256,
6
+ "max_aspect_ratio": 4.0
7
+ },
8
+ "nucleus": {
9
+ "datasets": [
10
+ "pannuke",
11
+ "nuinsseg",
12
+ "nucls",
13
+ "lizard"
14
+ ],
15
+ "min_short_side": 12,
16
+ "min_bbox_area": 256,
17
+ "max_aspect_ratio": 4.0,
18
+ "min_mask_fill": 0.3,
19
+ "exclude_source_boundary": true,
20
+ "lizard_min_largest_component_fraction": 0.9
21
+ },
22
+ "region": {
23
+ "datasets": [
24
+ "refpath_train",
25
+ "bcss"
26
+ ],
27
+ "min_short_side": 64,
28
+ "min_bbox_area": 4096,
29
+ "max_aspect_ratio": 6.0,
30
+ "max_parent_area_fraction": 0.8
31
+ },
32
+ "midogpp": {
33
+ "local_parent_side": 1024,
34
+ "preferred_target_margin": 64,
35
+ "min_short_side": 12,
36
+ "min_bbox_area": 256,
37
+ "max_aspect_ratio": 4.0
38
+ },
39
+ "reference_visibility": {
40
+ "long_edge": 1024,
41
+ "allow_upscale": false,
42
+ "min_target_short_side": 8.0,
43
+ "note": "Reference quality criterion, not a claim about the eventual training processor."
44
+ },
45
+ "image_quality": {
46
+ "metric_max_side": 128,
47
+ "white_channel_min": 245,
48
+ "black_channel_max": 10,
49
+ "blank_pixel_fraction": 0.995,
50
+ "blank_gray_std_max": 5.0,
51
+ "uniform_gray_std_max": 1.0,
52
+ "uniform_saturation_p90_max": 5.0,
53
+ "blur_review_quantile": 0.01,
54
+ "blur_filter_applied": false,
55
+ "stain_filter_applied": false
56
+ },
57
+ "recommended_sampling": {
58
+ "unit": "dataset, then parent/query, then an eligible target",
59
+ "dataset_probabilities": {
60
+ "refpath_train": 0.25,
61
+ "pannuke": 0.2,
62
+ "nucls": 0.15,
63
+ "nuinsseg": 0.15,
64
+ "bcss": 0.1,
65
+ "midogpp": 0.1,
66
+ "lizard": 0.05
67
+ },
68
+ "applied_to_export": false
69
+ },
70
+ "unsupported_sources": {
71
+ "segpath": "Source manifest validation error and source-summary count mismatch; not repaired here.",
72
+ "pathbind_grounding": "Official testA/testB samples are not training data.",
73
+ "pathgen16m": "Caption-based legacy subset is outside spatial grounding export."
74
+ }
75
+ }
package/quality_filter_report.json ADDED
@@ -0,0 +1,422 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "policy_id": "auxiliary_quality_filter_v1",
3
+ "started_at": "2026-10-10T02:17:40+08:00",
4
+ "source_manifest_sha256": "878b7e84d153a63006539477a26519d775a10358290c33406c69c1b80354c25c",
5
+ "source_index_sha256": "a9266b8ef5fcb027a7a7d32638b2f2b70dc9290a26046df68859e07f067ddc78",
6
+ "source_root": "/storage/ssd1/jiahao/ZoomPath/audit/auxiliary_quality_filter_20261010/unfiltered_export_metadata",
7
+ "output_root": "/storage/ssd1/jiahao/ZoomPath/auxiliary_training_v2/zoompath_training_v4",
8
+ "source_modified": false,
9
+ "huggingface_updated": false,
10
+ "manual_review_performed": false,
11
+ "datasets": {
12
+ "bcss": {
13
+ "rows_before": 6153,
14
+ "rows_kept": 2836,
15
+ "rows_excluded": 3317,
16
+ "retention_fraction": 0.4609133755891435,
17
+ "source_parent_count": 389,
18
+ "primary_exclusion_counts": {
19
+ "region_short_side_lt_64": 2816,
20
+ "region_bbox_parent_area_fraction_gt_0.80": 269,
21
+ "parent_short_side_lt_256": 225,
22
+ "region_aspect_ratio_gt_6": 7
23
+ },
24
+ "overlapping_exclusion_counts": {
25
+ "region_short_side_lt_64": 2934,
26
+ "region_bbox_area_lt_4096": 2347,
27
+ "region_bbox_parent_area_fraction_gt_0.80": 312,
28
+ "region_aspect_ratio_gt_6": 181,
29
+ "parent_short_side_lt_256": 225,
30
+ "parent_aspect_ratio_gt_4": 210,
31
+ "short_side_after_reference_resize_lt_8": 74
32
+ },
33
+ "class_counts_before": {
34
+ "tumor": 1981,
35
+ "stroma": 2128,
36
+ "lymphocytic infiltrate": 1082,
37
+ "necrosis or debris": 197,
38
+ "normal acinus or duct": 19,
39
+ "blood vessel": 204,
40
+ "blood": 83,
41
+ "plasma cells": 194,
42
+ "glandular secretions": 9,
43
+ "angioinvasion": 10,
44
+ "other immune infiltrate": 92,
45
+ "fat": 151,
46
+ "lymphatics": 3
47
+ },
48
+ "class_counts_after": {
49
+ "tumor": 1075,
50
+ "lymphocytic infiltrate": 502,
51
+ "necrosis or debris": 149,
52
+ "stroma": 809,
53
+ "blood vessel": 84,
54
+ "normal acinus or duct": 10,
55
+ "plasma cells": 72,
56
+ "angioinvasion": 8,
57
+ "other immune infiltrate": 33,
58
+ "blood": 21,
59
+ "glandular secretions": 4,
60
+ "fat": 66,
61
+ "lymphatics": 3
62
+ }
63
+ },
64
+ "lizard": {
65
+ "rows_before": 325966,
66
+ "rows_kept": 31446,
67
+ "rows_excluded": 294520,
68
+ "retention_fraction": 0.09647018400692096,
69
+ "source_parent_count": 148,
70
+ "primary_exclusion_counts": {
71
+ "nucleus_short_side_lt_12": 245989,
72
+ "nucleus_bbox_area_lt_256": 46260,
73
+ "nucleus_touches_source_parent_boundary": 594,
74
+ "nucleus_aspect_ratio_gt_4": 36,
75
+ "nucleus_mask_fill_lt_0.30": 240,
76
+ "short_side_after_reference_resize_lt_8": 1398,
77
+ "lizard_largest_component_fraction_lt_0.90": 3
78
+ },
79
+ "overlapping_exclusion_counts": {
80
+ "nucleus_short_side_lt_12": 245989,
81
+ "nucleus_bbox_area_lt_256": 290804,
82
+ "nucleus_touches_source_parent_boundary": 7834,
83
+ "nucleus_aspect_ratio_gt_4": 454,
84
+ "short_side_after_reference_resize_lt_8": 212089,
85
+ "nucleus_mask_fill_lt_0.30": 294,
86
+ "lizard_largest_component_fraction_lt_0.90": 120
87
+ },
88
+ "class_counts_before": {
89
+ "epithelial nucleus": 149626,
90
+ "plasma cell nucleus": 20070,
91
+ "lymphocyte nucleus": 77527,
92
+ "connective tissue nucleus": 72792,
93
+ "eosinophil nucleus": 2602,
94
+ "neutrophil nucleus": 3349
95
+ },
96
+ "class_counts_after": {
97
+ "epithelial nucleus": 26670,
98
+ "connective tissue nucleus": 4641,
99
+ "eosinophil nucleus": 44,
100
+ "neutrophil nucleus": 70,
101
+ "lymphocyte nucleus": 10,
102
+ "plasma cell nucleus": 11
103
+ }
104
+ },
105
+ "midogpp": {
106
+ "rows_before": 8008,
107
+ "rows_kept": 8008,
108
+ "rows_excluded": 0,
109
+ "retention_fraction": 1.0,
110
+ "source_parent_count": 265,
111
+ "primary_exclusion_counts": {},
112
+ "overlapping_exclusion_counts": {},
113
+ "class_counts_before": {
114
+ "mitotic figure": 8008
115
+ },
116
+ "class_counts_after": {
117
+ "mitotic figure": 8008
118
+ }
119
+ },
120
+ "nucls": {
121
+ "rows_before": 35848,
122
+ "rows_kept": 32538,
123
+ "rows_excluded": 3310,
124
+ "retention_fraction": 0.9076656996206204,
125
+ "source_parent_count": 1192,
126
+ "primary_exclusion_counts": {
127
+ "nucleus_touches_source_parent_boundary": 2698,
128
+ "nucleus_bbox_area_lt_256": 403,
129
+ "nucleus_short_side_lt_12": 183,
130
+ "nucleus_aspect_ratio_gt_4": 26
131
+ },
132
+ "overlapping_exclusion_counts": {
133
+ "nucleus_touches_source_parent_boundary": 2712,
134
+ "nucleus_bbox_area_lt_256": 530,
135
+ "nucleus_short_side_lt_12": 183,
136
+ "nucleus_aspect_ratio_gt_4": 56,
137
+ "short_side_after_reference_resize_lt_8": 31
138
+ },
139
+ "class_counts_before": {
140
+ "tumor nonMitotic nucleus": 14880,
141
+ "nonTILnonMQ stromal nucleus": 5789,
142
+ "lymphocyte nucleus": 9668,
143
+ "plasma cell nucleus": 4072,
144
+ "other nucleus": 506,
145
+ "macrophage nucleus": 765,
146
+ "tumor mitotic nucleus": 168
147
+ },
148
+ "class_counts_after": {
149
+ "tumor nonMitotic nucleus": 13381,
150
+ "nonTILnonMQ stromal nucleus": 5156,
151
+ "lymphocyte nucleus": 8907,
152
+ "plasma cell nucleus": 3743,
153
+ "other nucleus": 477,
154
+ "macrophage nucleus": 717,
155
+ "tumor mitotic nucleus": 157
156
+ }
157
+ },
158
+ "nuinsseg": {
159
+ "rows_before": 25718,
160
+ "rows_kept": 20521,
161
+ "rows_excluded": 5197,
162
+ "retention_fraction": 0.7979236332529746,
163
+ "source_parent_count": 662,
164
+ "primary_exclusion_counts": {
165
+ "nucleus_touches_source_parent_boundary": 3763,
166
+ "nucleus_short_side_lt_12": 955,
167
+ "nucleus_bbox_area_lt_256": 360,
168
+ "nucleus_aspect_ratio_gt_4": 47,
169
+ "nucleus_mask_fill_lt_0.30": 72
170
+ },
171
+ "overlapping_exclusion_counts": {
172
+ "nucleus_touches_source_parent_boundary": 4408,
173
+ "nucleus_short_side_lt_12": 955,
174
+ "nucleus_aspect_ratio_gt_4": 167,
175
+ "nucleus_bbox_area_lt_256": 959,
176
+ "short_side_after_reference_resize_lt_8": 192,
177
+ "nucleus_mask_fill_lt_0.30": 76
178
+ },
179
+ "class_counts_before": {
180
+ "nucleus": 25718
181
+ },
182
+ "class_counts_after": {
183
+ "nucleus": 20521
184
+ }
185
+ },
186
+ "pannuke": {
187
+ "rows_before": 187831,
188
+ "rows_kept": 111605,
189
+ "rows_excluded": 76226,
190
+ "retention_fraction": 0.5941777448876916,
191
+ "source_parent_count": 7557,
192
+ "primary_exclusion_counts": {
193
+ "nucleus_touches_source_parent_boundary": 30588,
194
+ "nucleus_short_side_lt_12": 32408,
195
+ "nucleus_bbox_area_lt_256": 12689,
196
+ "nucleus_aspect_ratio_gt_4": 137,
197
+ "nucleus_mask_fill_lt_0.30": 404
198
+ },
199
+ "overlapping_exclusion_counts": {
200
+ "nucleus_touches_source_parent_boundary": 56071,
201
+ "nucleus_short_side_lt_12": 32408,
202
+ "nucleus_bbox_area_lt_256": 42380,
203
+ "short_side_after_reference_resize_lt_8": 14958,
204
+ "nucleus_aspect_ratio_gt_4": 5664,
205
+ "nucleus_mask_fill_lt_0.30": 418
206
+ },
207
+ "class_counts_before": {
208
+ "neoplastic nucleus": 76694,
209
+ "inflammatory nucleus": 31932,
210
+ "connective tissue nucleus": 50050,
211
+ "non-neoplastic epithelial nucleus": 26300,
212
+ "dead nucleus": 2855
213
+ },
214
+ "class_counts_after": {
215
+ "neoplastic nucleus": 46980,
216
+ "inflammatory nucleus": 18636,
217
+ "connective tissue nucleus": 28663,
218
+ "non-neoplastic epithelial nucleus": 16856,
219
+ "dead nucleus": 470
220
+ }
221
+ },
222
+ "refpath_train": {
223
+ "rows_before": 28908,
224
+ "rows_kept": 28392,
225
+ "rows_excluded": 516,
226
+ "retention_fraction": 0.9821502698215027,
227
+ "source_parent_count": 23980,
228
+ "primary_exclusion_counts": {
229
+ "region_short_side_lt_64": 472,
230
+ "region_bbox_parent_area_fraction_gt_0.80": 39,
231
+ "region_aspect_ratio_gt_6": 5
232
+ },
233
+ "overlapping_exclusion_counts": {
234
+ "region_short_side_lt_64": 472,
235
+ "region_bbox_parent_area_fraction_gt_0.80": 39,
236
+ "region_bbox_area_lt_4096": 20,
237
+ "region_aspect_ratio_gt_6": 11
238
+ },
239
+ "class_counts_before": {
240
+ "source-described region": 28908
241
+ },
242
+ "class_counts_after": {
243
+ "source-described region": 28392
244
+ }
245
+ }
246
+ },
247
+ "source_mask_files": {
248
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/consep_10.mat": "f6129617b67544f6ff1c005d1bf778b2f37d534bdcce9a1d126659e43cc9b9a9",
249
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/consep_11.mat": "38529ff751c22efc0451c6dd7971a0371d0007b08afba500f917032a9ae6e71f",
250
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/consep_12.mat": "d2dea6cf7c4fe97ab15445ad230f0e21381e93b9c59d522f7da00a66286cc22e",
251
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/consep_13.mat": "710b45324e06ca10e1a6a8e27e551d431708ad829d20c23763812c807469e53e",
252
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/consep_2.mat": "5f785b464e7547c292633585481970acb7d8b85c09be1847104ad3c78e45aa15",
253
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/consep_4.mat": "85c972c83701a6b57b36b26ef0ec73330780cef5c3cd2897afed6b2448b09dfd",
254
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/consep_5.mat": "3bd7621a4356198646920e00fdd654a981fd5433cbe7f9a0cf32cc5688d2dd2d",
255
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/consep_7.mat": "bebbd8784e57c22b5e5bc88e10b4691d50b4be39648a5fc82ca9c30d9a7f5666",
256
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/consep_9.mat": "16a9d5caa20d0d388df334d6caab61be70a984a89905863001c59633859bfc66",
257
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_1.mat": "7f0d96b377afae4a81a2499c6ac63afd0a05e360d40063ff03097bad302724e3",
258
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_11.mat": "07ee2a23dc17d783b7a6f2effd1431ee4ee2c6bd88b208f8e8aa70ed3da4dd78",
259
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_13.mat": "39eb4a67ff9ec2228a55bd74e45481d4942e0bb568ef065100a79e14a31434b1",
260
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_14.mat": "bdda028f69c95df9fb48d6a6b44dc5da3b3210444cc64a3a53e77d46272fc3a1",
261
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_15.mat": "1537dfefcd6a5bea6d6832dea7b5979dac528a9c64546904e0c869ef24bee22a",
262
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_16.mat": "c5f7cbbc86aa999cb6bf05af8cc170a18f0144fbf37896b225b66af0ba8e75f3",
263
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_17.mat": "3372ba3da025d69b7b8dbac9f1957a329d264ca8a2a717f351fa6f32db98452d",
264
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_19.mat": "e1e6f994c4f9971d169128ae931d0e88b184db527b9f39380005d459b76f28ad",
265
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_20.mat": "43fefa7ccce35944b0773c428e4b49c8fb6e63eaf32a43fcadf69a81bb39a695",
266
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_25.mat": "8ce392514e102a2eb778429b7aea308c2aadec748cae3929e1778ae5a741f218",
267
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_26.mat": "60cd00265d6924064876b57b22a2ced2863d56f89437ff75b0ee4a6cbef149d1",
268
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_27.mat": "ab2463306ae1e8b67bcab9f2226ea5f40b6632419b5b4e8a97796e2cee7b3926",
269
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_28.mat": "6ec469f1b8987b2fba74a58325f147675b2ca21b2c2a4aeac9e03c151a929a0c",
270
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_3.mat": "ab5494c180e12525a4305d8044c436496bdb5c4ee10742cea39dd134695a21a7",
271
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_31.mat": "773f0c8dbb9436c319d7e2a9eb6c809efeeb07e0c7f951298c82e762379f7592",
272
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_32.mat": "03076d1223616ecbc20b82441503de2f49438d46efc38db5e9b375913be87fed",
273
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_35.mat": "6ad2787f57ad8d0639ac688fc7b9da96f203ab1970ff0dfa1899aed4053cf8b9",
274
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_36.mat": "d86312517c7c250df300b17b8142648d13c4b67836fd7b056bf16eb227f5c79f",
275
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_38.mat": "67ad4c9a5a75cae59a4202db974799240fbaf2ee289494fed625bd01715fcb19",
276
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_39.mat": "c5518cacf849478f596e638b901945d3ac8e6f2abf336b4fc3176a52cf072507",
277
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_4.mat": "864548ba0a4928bb63270cc3c781d6dc705c5c475eceec569d93cddda2fa4123",
278
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_40.mat": "d9bcfc55f588061773ddf7571d0f462e1669b4afa46ecf09b15a73b09765569a",
279
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_41.mat": "1f5df923516f6328b11ea071c68cfdc584ee08b3decb083558c3e371a2ed5bc9",
280
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_42.mat": "a459198e3250d66367f092300882b3a701f6307c70f71cca8dc5b40122488260",
281
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_45.mat": "8ad1799453fa052c0773853c0aebd7cc82ed4af006cb4bec7888df200f26538a",
282
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_46.mat": "40ed06d1605afc94bd684399a5fe4933dd695198e13903edd50ae7f3244c7e57",
283
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_47.mat": "4c2ab2b4371fcaf90f8acf0640d38f4f89691e468def9a531228e815d0f35fc6",
284
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_49.mat": "8410526890cb92718ca71ade4e9cc6c8f10f30616065e332476885a27534237b",
285
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_50.mat": "7c4f785a4a73e1ac3ac10196a25221ad83c04e584af3e84d3bb20d2699d6f7b6",
286
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_51.mat": "df94c66924a1447456522af73f3fde09039c093854fa04927e2e626871d8a76a",
287
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_54.mat": "dfed112008682233bd20c8f8588e53fb3c8ddda65b3886a1c4b545d94962023a",
288
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_56.mat": "3cc42c2c5a953f4abdd5c5493c290b4181be184d9e84c20994c7cc40be18f516",
289
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_57.mat": "3a3014865b00b0466d5644c85e3b65efe34d3cf98d960f68539af5e1923caee1",
290
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_58.mat": "aa4bcb20cf64196ad21c17920b6363cae3f9ea80f15a176256ec14bd45a5f2da",
291
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_59.mat": "6225962be9e35bff0069b94fe54cb996736962074de0f565589af4266df69827",
292
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_60.mat": "66dc49c3b9f6d74a84d3feb0cf23c99120d3024f47b6ac38fd2ffd82d6365b80",
293
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_61.mat": "df2f4bda208da5ad978943ffeb171188aae3273f867382aba92e25fb74f64ce1",
294
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_64.mat": "564fb2a7c29fa8418942a730251e394be04a2fd5e4e184425f61f3e527a35384",
295
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_7.mat": "63138200a51e5759930e3c6c7d77fb809d5e3d275690183daded9741c5a50a1d",
296
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/crag_9.mat": "36cbe096d2728e4b7fcface3623e9f889ff929ebf66172032e52b19c3459f076",
297
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_1.mat": "a35ee2de68431ffd1e598a37be385b0159a638922321c84778c56bda0217539f",
298
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_10.mat": "38492133d78a9a1c267958fb57a105ede401cb86dcd5e6d54a0a27068d2c9731",
299
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_11.mat": "c4c76040208fa6fed0f9e4e72da99f3e2f080e700d46fbb04882b90b6fb423c3",
300
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_12.mat": "eb5372a457df0f9b55cc78d0e616425787ede76039a836971c536422f7dbfff2",
301
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_13.mat": "9f3b3357a5c4d33973c785b6bc4644ada33bfce5eee63494fc2553dc56c14269",
302
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_14.mat": "4c7a430fa3d0fd3f5211e3966b724b025cc232129a46d4c08d89734d552eeda2",
303
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_15.mat": "d6483f18b853a7b4b41224365f828ea6e4aba8d3304799c2d13032407bcfa52a",
304
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_16.mat": "c1e3177f91b717501cdf6b096bdf9bcd417cdf0026fefc815d803232828c0abf",
305
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_17.mat": "d02c7294f9e709265f0ccdd059969483ee15cc0b4d3584c66e0a72b4baa25701",
306
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_18.mat": "16f43680270212befbfd9aa726218f66cf134e4749377f33ec0d8061e31d6fe2",
307
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_19.mat": "486c14c2e3e4559826d6de09706e9013f3330134d5d770f869c3f445e24d4a8e",
308
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_2.mat": "9f91ea1e3198bb99ab142622e0b7c87676a364a4b7534cce32de849d712e7125",
309
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_20.mat": "6e4d56d53cd7ca57c5ed4be671a8722e2225e589d6e74c7658e2a0f48891b179",
310
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_21.mat": "daadd7d672064e5100860bf1aa31efe8b7c9e8e71b31d789e59a1f012abc5671",
311
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_22.mat": "1121aa1a9e61b74025523458db506cbf0d1f19e9e8c3f2fe08c03c527a2a7ead",
312
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_23.mat": "1bfcb084422ee37d334d45cd10bc8aded81c3f9517157468529051adec8a5a18",
313
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_24.mat": "e5591dc5469b4384d2eb6f9ed3ffc536ef152dcce3079584b4bcdebbf59fbf83",
314
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_25.mat": "44d2277734edb96dc08e35965678f3a69debfd39b68cd5ffb939122945f28bc1",
315
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_26.mat": "9a7a34bce3278370b5d810fba2f57690c90e1e6ba5b9ca6448b534b4c109eb00",
316
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_27.mat": "be673e20014fd5664d2c41b8a896965cdc0970b274f731d3f3f34a8ad2cfbc0d",
317
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_28.mat": "bd52095ace7a0a94b1045320462501d1e4f843412925adfff0e92001b8cffa73",
318
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_29.mat": "fb52cc950ed4444fe5de60c0516bf6d6cb45e9f1f5d4f974b25602cbf48d58cc",
319
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_3.mat": "9a2fb68bcb03afb51019652857a5184048672266b560131e1ea0c05220220a19",
320
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_30.mat": "42647140f74c461da8efb280faf8bcbc1d5b30e6a7af9819400235f3c51ebaeb",
321
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_31.mat": "bb47579815f5ef5738072063d7d4e1ca65d28532813fe251e78944078049af3c",
322
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_32.mat": "48277fc49495700c1edb775564a3172f6a66180745d20b73ebd7eae0430bd017",
323
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_33.mat": "0eed4051158f4403492dd7745b199f9e882410b7f0f8a42a3dde506a98624d02",
324
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_34.mat": "8f3aaf298c676fcb59cb3332c6c28d45cf61c44100eb3bae0297ecc74f0149eb",
325
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_35.mat": "97970728fdbf94d24aad9c36442d64711048dd888a6ec7d750305901216ef351",
326
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_36.mat": "e0e4fdc532312f09d959ef59323eabbc8ce763678c25ae0c5029228f825e0417",
327
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_37.mat": "4e5f026e1faec77c6673ed7abf8c913c073a52abe3d594717b9ee69521ceacc3",
328
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_38.mat": "da23d24fcaa0d9fc8aa20a61611c9a35f8150dcf004dcb05b18668bf9962f8cc",
329
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_39.mat": "ed1a47c4b0ac06b7d744b1632b5dc2a18a678589594861214b51700a71424dd7",
330
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_4.mat": "4e45a1d5cb6fbf75d7259625838b24232daecd98efdcc91835838d5f78d59638",
331
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_40.mat": "55289f74d4c17ee636a32557d55b660b27f2fd62d7d1302e80645de38f863de4",
332
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_41.mat": "224ffe922bb1c30539262e6e7fe334eb303ecaf4fad6ed265e941e9018cf6593",
333
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_42.mat": "ec7cdf11f922383c7cad9e29eb17dcbd826d4da120ea25d3d9c6d750afa668d6",
334
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_43.mat": "2b30ff78650fe8efffcfa5675da9e2da64b45acc83c031431848d21d62c40d66",
335
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_44.mat": "99c77efdd43eb9971793661c1b9215ec00d3eaabef29b1eeabe131f412235f99",
336
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_45.mat": "fc51b20e31caabeb34a379b471cbfa796edc56420836911950526a1c5edf1052",
337
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_46.mat": "8fd393f125d5b4f7476fbc0f0535459d4f5d04787f83efee064da159b9570b8a",
338
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_47.mat": "98ddab2c0f06220f3dab82ce197e7e2a69e47199861eec5566606b65d63bc38e",
339
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_48.mat": "1e2c8a1b43cd2718758b0afe323b6b168dc74421cb9a6462b6333baefa0e6097",
340
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_49.mat": "d3357bf4e504bdc6ab68ee3eebf0653fe7e3396c14559c9b9a114645331e1c68",
341
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_5.mat": "84194f37c885669f4231b6c874e6b1978bc86a1746f9fb5a3b9378920d16d862",
342
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_50.mat": "a61ae139941aa48b9533a7d83416375efe2622a500772c92007f0067925f9835",
343
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_51.mat": "a077d304a05a33e9b347788f6f61b2991618bad3f5f3fc811d9ca4be33923822",
344
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_52.mat": "f4c7df489bc9480c70b98aa58cfafde8150bb3dda22d59c521694deb50458258",
345
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_53.mat": "680c0f8b41fe9ce62ccc39f40089670df369ed237ca0b23f2206b7833c332245",
346
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_54.mat": "1d29cb2794f27fb8eb52f673fc5e569484a1d7fb0534aefb9cc7de2aa5a73a79",
347
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_55.mat": "10d7bdc03cf93b85ad263b95477209bf81a469159b83afccf340ca54691a1484",
348
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_56.mat": "9caa6612e5b2051b4135026cd6246e087d293ef25749d169fe41c5ccace60473",
349
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_57.mat": "5e671116afcf549c2bf7cc4936435dc0d63d4f97eb8321c70e4b0beb4b4a47c3",
350
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_58.mat": "290c17a0b5778a6571700ee26f22d1127e6e13f2b3dfb0d6bee83d32418ad2c5",
351
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_59.mat": "34669c398026f032737587d4ff997e82785227537f2a936dad3568f8eb78bd91",
352
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_6.mat": "42bb929a4a0a3b84f77757f912f21b5450a5955120e2651c7a2bbc944b317c4a",
353
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_60.mat": "7feda69dabcdd4b5229bf52f4f9a6f8f416a99e59b1957d4833bad5b46c2cedd",
354
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_61.mat": "f9f542b58eae01c8db804eb7915ea9b23f96b8899153dfc4dfe8241821d992ad",
355
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_62.mat": "501279b68d329f5a2e4e69095ea09b82e84170d70fb6f0c6862cc50533be5132",
356
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_63.mat": "556dc73bad1267f905ed679fe43c8b19115edae3ce6e68825b2edffd5231876d",
357
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_64.mat": "e9800a8fb753124250cf8b47d785f76582bacec44f280997a49c7a1f7eb70057",
358
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_65.mat": "c16aa15607ae828572af5a8b55b4df10de8b8cac393c184fefba0cf187b32207",
359
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_66.mat": "1b9b44690784cc50909c414f3593a41286be4c7a2401144a2e436b23d6901fb0",
360
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_67.mat": "3cb05eff455f2761d91e3a2b6c96a2f2e5fc087ca4ef90c07024784283e3a9b9",
361
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_68.mat": "fb6da6182bb4773346bb7f3026fd813b026ee5d808a933fdfb28602f7e523eef",
362
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_69.mat": "2d225590dd303319bf14310dece283e8e77c235f6df48701e3d4e1f00afa8484",
363
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_7.mat": "ac99880313d138823a7c91e540dcc3854307bf5ab5c8be0fbdf6f262007ad44c",
364
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_8.mat": "2b4eacdd6f9a79fa162ebb07136807384639dd27f78dd7b3e62f051b78401756",
365
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/dpath_9.mat": "9f7a32c5607a69f6bd953c05e2e92162d1d74e1f5302d815e5d326dd5e831650",
366
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_11.mat": "78fec5725083d3a80e694d5da35077495660e54775ad5a8719e3495e3d648827",
367
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_12.mat": "5d6ebbb6af0fa263907677f517a675ddc4dbdf39298fcd77f9ecba794401555d",
368
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_13.mat": "017ff945830b5f0a6701332226f0becb73f8832ef19079ada30454f80c4144fe",
369
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_14.mat": "e5403240edf5e358f2a0a165a97156d9aefee4638207d8eeb4e77a8fd4948594",
370
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_17.mat": "c336b5f1ee8f52de915603c3b141872f2a9afcf74870c8758b866c49f3c797b6",
371
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_18.mat": "a90b2046c50749ca688c618473e548992ebb9861670fc2a68df97a0f34a8abda",
372
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_2.mat": "fed7fa7ec9373f503a992481853378c113a7bd9cc8e8542645d539d84034dffb",
373
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_21.mat": "fd7b86d589b92d58dffad22ed6eed0abca554fcf50e8a1c3b3c5c1d9a629412b",
374
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_22.mat": "d2dc122266b83e273fd7292aaea14319413c9791b62f3e1823c734921e243687",
375
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_25.mat": "c7c99034e49029c8ce83ef2db6ad9775f3e4a98eab5ace15a5e12de2b2f94aba",
376
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_26.mat": "93a4268da02bf48e50d0ad062c384956044877b938066575a7a86f8ec21d07e9",
377
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_29.mat": "3a52226c5616f208760a031d5316451e14ffda26c454e5760c820d69ac101862",
378
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_3.mat": "4887464ba81dd26d9ac82f1bd5d8d43316582f236c8533ec8fed6e758911bfb7",
379
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_30.mat": "44b11afc33182db9a99d67178afd70321baa3c778e3b03854c9888da5a1ecb1a",
380
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_34.mat": "457b5a7cea9f9d6fbe9e5cd8356cba3e52f537f46379813431b83c81774f1bd6",
381
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_35.mat": "a5cf6a50e8e4c0931c97b32c24143c5c9b091858d4c2e729347b95fa65dceb8f",
382
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_37.mat": "37c90fcb2400f0c628bdc9e084c9ad247f6a21870354f3fd04849c643ed37e88",
383
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_38.mat": "687db34c5fa6ee66f94e717b8984b1e698c0fa91b3cfd1cc113cf1726cf9fd2b",
384
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_44.mat": "b70da98010a32f68f1aaa36d78a1ace28a1e36130fb10d7c17522bbb42ccf3b4",
385
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_46.mat": "320d25aada8cc88515ff1c241b20c5b47b12155a39cfbf9540b9a05e7aef8a02",
386
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_49.mat": "988f0f46f1b0761df83b25d4ecb9c522e8611ddcc3403b08b2d51124949c4582",
387
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_50.mat": "a17a33d54ec35484663c4e36e9193a2d3fe81f76c40cc8fdd2a272f307511743",
388
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_52.mat": "55008c8efdcfee14b5ad469198c27c1242380babb46e2eec024a7d351907a8f8",
389
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_53.mat": "7ee5ec05ec69e6a3c336c2f8a52fe39bb24c1136a48c0ed90dce8cecb7d0c067",
390
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_54.mat": "d4d56e8ce56b5207cf5696f438bf0ee9909a982397110a9c69bdfa12b8dec0b8",
391
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_55.mat": "213a28005ead19598fead563a4ff449f5538540702085d3b89b8c827fe50b2e9",
392
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_56.mat": "4ab2fa647950861847dfe9d91c66e591976ad6e0e6c8a9a74d22f167d2a06b31",
393
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_58.mat": "7af63e7b5cfd6abcd477052435ebd82e1a8f9821f32ed44019cb522a78452b93",
394
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_60.mat": "36e94c11484f94584b74807d398dfccde8809c659286f153a82096b5ca76e8b7",
395
+ "sources/lizard/data/lizard_labels/Lizard_Labels/Labels/glas_7.mat": "7777bc8dda9490c6c8b9f32a4afc37d61cfccdf66a61e2744bbf41951a58989c"
396
+ },
397
+ "excluded_sources": {
398
+ "segpath": "Source manifest validation error and source-summary count mismatch; not repaired here.",
399
+ "pathbind_grounding": "Official testA/testB samples are not training data.",
400
+ "pathgen16m": "Caption-based legacy subset is outside spatial grounding export."
401
+ },
402
+ "status": "filtered_not_manually_reviewed",
403
+ "rows_before": 618432,
404
+ "rows_kept": 235346,
405
+ "rows_excluded": 383086,
406
+ "unique_parent_count": 38836,
407
+ "annotation_file_count": 38836,
408
+ "unique_parent_query_count": 47933,
409
+ "retained_child_full_pixel_checks": 235346,
410
+ "midog_local_parent_count": 5514,
411
+ "completed_at": "2026-10-10T03:44:28+08:00",
412
+ "row_decisions_sha256": "4fad5bf99b648d11f30feacfeeda9d3e27d5651c84eaf2fdab20327e381d0d32",
413
+ "manifest_sha256": "eeda70abfec170771f9084d2330011dcfa8443c2132ea8a2e8a576296e78fa85",
414
+ "policy_sha256": "074cb1762681d91ba1a2be8a32ef29acfcbab80ffd2c71723b3a3defe0ccf95a",
415
+ "implementation_sha256": "9cf76af52201fca74f5c97e4cf1c68a0d3a5b6f315513574b05bdfb85c42e032",
416
+ "generation_source_root": "/storage/ssd1/jiahao/ZoomPath/auxiliary_training_v2/zoompath_training_v4",
417
+ "generation_output_root": "/storage/ssd1/jiahao/ZoomPath/auxiliary_training_v2/zoompath_training_v4_quality_filtered",
418
+ "local_compaction_audit": "/storage/ssd1/jiahao/ZoomPath/audit/auxiliary_quality_filter_20261010/compaction.json",
419
+ "original_complete_backup_root": "/jhcnas3/jiahao/ZoomPath/auxiliary_training_v2",
420
+ "readme_sha256": "729b4cb200ee0da3bfc8ba6f58c6da96c7f330dcfbf794f9b7861580725617c4",
421
+ "methods_sha256": "85b5181cef227178b0876f69d7fce367ec3512afd69c28d5ba0a2f1b222f277b"
422
+ }
package/quality_validation.json ADDED
@@ -0,0 +1,29 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "status": "pass",
3
+ "validation_scope": "all source decisions, all output rows and annotation views; source preservation, target eligibility and ignore semantics",
4
+ "manual_review_performed": false,
5
+ "counts": {
6
+ "source_rows": 618432,
7
+ "retained_rows": 235346,
8
+ "eligible_answer_instances_across_rows": 18384090,
9
+ "ignored_answer_instances_across_rows": 36226228,
10
+ "unique_eligible_targets_in_views": 244563,
11
+ "excluded_rows": 383086,
12
+ "unique_ignored_targets_in_views": 383211
13
+ },
14
+ "dataset_counts": {
15
+ "refpath_train": 28392,
16
+ "pannuke": 111605,
17
+ "nuinsseg": 20521,
18
+ "nucls": 32538,
19
+ "bcss": 2836,
20
+ "lizard": 31446,
21
+ "midogpp": 8008
22
+ },
23
+ "annotation_views_checked": 38836,
24
+ "retained_selected_target_instances_in_views": 235346,
25
+ "source_manifest_sha256": "878b7e84d153a63006539477a26519d775a10358290c33406c69c1b80354c25c",
26
+ "output_manifest_sha256": "eeda70abfec170771f9084d2330011dcfa8443c2132ea8a2e8a576296e78fa85",
27
+ "source_mask_checksums_checked": 148,
28
+ "error_count": 0
29
+ }
package/review/bcss_excluded.jpg ADDED

Git LFS Details

  • SHA256: f7f554a87e16f07cf0f837a01fa5ceb3f0c03eaef4f9bd07320636bc3bd1e522
  • Pointer size: 131 Bytes
  • Size of remote file: 128 kB
package/review/bcss_kept.jpg ADDED

Git LFS Details

  • SHA256: f82ea0d297136405c04eedd1b9191e4323aa6851f575aa563ebd2b5acbb3edfb
  • Pointer size: 131 Bytes
  • Size of remote file: 129 kB
package/review/lizard_excluded.jpg ADDED

Git LFS Details

  • SHA256: f915ef505aa2bb0b96c33c58ef9c28b680be6bbac5679f7928b244eae4862c56
  • Pointer size: 131 Bytes
  • Size of remote file: 126 kB
package/review/lizard_kept.jpg ADDED

Git LFS Details

  • SHA256: 67939f9afd3e7109952f39a95d2d48b32d7f7d39543089373d062c638aaaa100
  • Pointer size: 131 Bytes
  • Size of remote file: 113 kB
package/review/low_focus_candidates.json ADDED
The diff for this file is too large to render. See raw diff
 
package/review/midogpp_kept.jpg ADDED

Git LFS Details

  • SHA256: 824c982fa5dcc0b401746daf77dbb9c88df1765af06aa77af49097940c283f57
  • Pointer size: 131 Bytes
  • Size of remote file: 132 kB
package/review/nucls_excluded.jpg ADDED

Git LFS Details

  • SHA256: 6c01c1c9793a10edf3ed0826d0f367b6838fed43d848bdd98354f0398e7fb8c7
  • Pointer size: 131 Bytes
  • Size of remote file: 115 kB
package/review/nucls_kept.jpg ADDED

Git LFS Details

  • SHA256: 8e96f93222135f9d40abb688ed3b219b409831f843b1ed093320ccb9ae4e2225
  • Pointer size: 131 Bytes
  • Size of remote file: 107 kB
package/review/nuinsseg_excluded.jpg ADDED

Git LFS Details

  • SHA256: 4e9a62349d81f2678a31884c335dca64ec4213a6f11fada327f7dfd6a7ce1c00
  • Pointer size: 130 Bytes
  • Size of remote file: 70.8 kB
package/review/nuinsseg_kept.jpg ADDED

Git LFS Details

  • SHA256: 5c405175ff561d9c7704a324b46a0d66a1143fe5c23bb28366811858a8d03aab
  • Pointer size: 130 Bytes
  • Size of remote file: 66.4 kB
package/review/pannuke_excluded.jpg ADDED

Git LFS Details

  • SHA256: 6759510a5f0c04aa602cec406fc63d9bbdb244b0acf58aa7e6dea6db2c79ede4
  • Pointer size: 131 Bytes
  • Size of remote file: 109 kB
package/review/pannuke_kept.jpg ADDED

Git LFS Details

  • SHA256: 33cce6ad83b6d05c732b324869f1ee41262c52ab28e3664412b71b546ecf9c40
  • Pointer size: 130 Bytes
  • Size of remote file: 92.6 kB
package/review/refpath_train_excluded.jpg ADDED

Git LFS Details

  • SHA256: b8881b702b58bc04653af070eac2ba9c39699c3c777eb12a24391c7b9a9f115b
  • Pointer size: 131 Bytes
  • Size of remote file: 115 kB
package/review/refpath_train_kept.jpg ADDED

Git LFS Details

  • SHA256: 8138d4c85b0e21e525f3141c3f7cd0ffea98f7a79a4a28ac320fa784d797f3ab
  • Pointer size: 131 Bytes
  • Size of remote file: 114 kB
package/review/samples.json ADDED
@@ -0,0 +1,1222 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "seed": 20261010,
3
+ "manual_review_performed": false,
4
+ "samples": [
5
+ {
6
+ "dataset": "bcss",
7
+ "state": "excluded",
8
+ "record_id": "76de226a5b80b7c72b15ade7",
9
+ "source_parent_path": "images/parent/a4/a48a3615b51d45f244dba2bfc24236be6866cfbdf0e60f309b7a30c12667a982.png",
10
+ "bbox_xyxy_in_original_parent": [
11
+ 42,
12
+ 193,
13
+ 94,
14
+ 266
15
+ ],
16
+ "parent_crop_xyxy_in_original_parent": null,
17
+ "reasons": [
18
+ "region_short_side_lt_64",
19
+ "region_bbox_area_lt_4096"
20
+ ]
21
+ },
22
+ {
23
+ "dataset": "bcss",
24
+ "state": "excluded",
25
+ "record_id": "a7dbeff0ce6d84b0698a886d",
26
+ "source_parent_path": "images/parent/82/824963c49899c128d519fb916185f7faf443dc45b2e9b90df43e346528f4599f.png",
27
+ "bbox_xyxy_in_original_parent": [
28
+ 126,
29
+ 0,
30
+ 155,
31
+ 27
32
+ ],
33
+ "parent_crop_xyxy_in_original_parent": null,
34
+ "reasons": [
35
+ "region_short_side_lt_64",
36
+ "region_bbox_area_lt_4096"
37
+ ]
38
+ },
39
+ {
40
+ "dataset": "bcss",
41
+ "state": "excluded",
42
+ "record_id": "72bfab0c55685f811f77ff06",
43
+ "source_parent_path": "images/parent/f0/f0a371bd38d25b312a312a4757858eb9607d28ed50e31b0dc122ceaabc1518cd.png",
44
+ "bbox_xyxy_in_original_parent": [
45
+ 237,
46
+ 706,
47
+ 275,
48
+ 750
49
+ ],
50
+ "parent_crop_xyxy_in_original_parent": null,
51
+ "reasons": [
52
+ "region_short_side_lt_64",
53
+ "region_bbox_area_lt_4096"
54
+ ]
55
+ },
56
+ {
57
+ "dataset": "bcss",
58
+ "state": "excluded",
59
+ "record_id": "33c5ddbfe3646ade5c4dd8f7",
60
+ "source_parent_path": "images/parent/d8/d8d499c1a138a83b62e5af9168eb97c4b077927521ac69c75bacee57bd990674.png",
61
+ "bbox_xyxy_in_original_parent": [
62
+ 484,
63
+ 61,
64
+ 549,
65
+ 108
66
+ ],
67
+ "parent_crop_xyxy_in_original_parent": null,
68
+ "reasons": [
69
+ "region_short_side_lt_64",
70
+ "region_bbox_area_lt_4096"
71
+ ]
72
+ },
73
+ {
74
+ "dataset": "bcss",
75
+ "state": "excluded",
76
+ "record_id": "6e503d8c589ce4a8c71adc33",
77
+ "source_parent_path": "images/parent/14/14d3fdef5bb383af5c9581b576efbf068c8247c4647f2d4e47ed70886f9e9f84.png",
78
+ "bbox_xyxy_in_original_parent": [
79
+ 951,
80
+ 251,
81
+ 1024,
82
+ 303
83
+ ],
84
+ "parent_crop_xyxy_in_original_parent": null,
85
+ "reasons": [
86
+ "region_short_side_lt_64",
87
+ "region_bbox_area_lt_4096"
88
+ ]
89
+ },
90
+ {
91
+ "dataset": "bcss",
92
+ "state": "excluded",
93
+ "record_id": "c6f01056844704a8926b2d23",
94
+ "source_parent_path": "images/parent/34/34c50b274c9d8f4edd51161d5fac678c8b08bbda99a9712db3557f6c56d238f5.png",
95
+ "bbox_xyxy_in_original_parent": [
96
+ 906,
97
+ 762,
98
+ 1024,
99
+ 790
100
+ ],
101
+ "parent_crop_xyxy_in_original_parent": null,
102
+ "reasons": [
103
+ "region_short_side_lt_64",
104
+ "region_bbox_area_lt_4096"
105
+ ]
106
+ },
107
+ {
108
+ "dataset": "bcss",
109
+ "state": "kept",
110
+ "record_id": "219e974da8cbbbb4d8ccf6a5",
111
+ "source_parent_path": "images/parent/6a/6a271f2777b217e3d36a60973082e344c4fab974c03b96a2a5f39d43f3a9dd1d.png",
112
+ "bbox_xyxy_in_original_parent": [
113
+ 0,
114
+ 0,
115
+ 176,
116
+ 152
117
+ ],
118
+ "parent_crop_xyxy_in_original_parent": null,
119
+ "reasons": []
120
+ },
121
+ {
122
+ "dataset": "bcss",
123
+ "state": "kept",
124
+ "record_id": "c5b9d04d26150e4ee2ce8a3d",
125
+ "source_parent_path": "images/parent/a1/a101a9ef7c1af4904fb0c19378f2995a3beae9ed885c8e2efc9f9e2aadd61088.png",
126
+ "bbox_xyxy_in_original_parent": [
127
+ 549,
128
+ 0,
129
+ 837,
130
+ 94
131
+ ],
132
+ "parent_crop_xyxy_in_original_parent": null,
133
+ "reasons": []
134
+ },
135
+ {
136
+ "dataset": "bcss",
137
+ "state": "kept",
138
+ "record_id": "bbf41496260e1026ba06aa17",
139
+ "source_parent_path": "images/parent/84/8464d6e730d6f051a52b5f95c7831902bd3de7ddb4f5016394a7ef604a6c32e6.png",
140
+ "bbox_xyxy_in_original_parent": [
141
+ 772,
142
+ 53,
143
+ 907,
144
+ 240
145
+ ],
146
+ "parent_crop_xyxy_in_original_parent": null,
147
+ "reasons": []
148
+ },
149
+ {
150
+ "dataset": "bcss",
151
+ "state": "kept",
152
+ "record_id": "0683342ba83dccaa0676bd94",
153
+ "source_parent_path": "images/parent/de/de6b3574a04548476976a1d92d269adb1b0bf7cf9b23a1d99a17834e72f02371.png",
154
+ "bbox_xyxy_in_original_parent": [
155
+ 742,
156
+ 22,
157
+ 841,
158
+ 121
159
+ ],
160
+ "parent_crop_xyxy_in_original_parent": null,
161
+ "reasons": []
162
+ },
163
+ {
164
+ "dataset": "bcss",
165
+ "state": "kept",
166
+ "record_id": "a9164654ad04148a01a53831",
167
+ "source_parent_path": "images/parent/70/7062ba79edc01761851db4a8a337008379942d7655ca922dab39ad3cb2f3909a.png",
168
+ "bbox_xyxy_in_original_parent": [
169
+ 568,
170
+ 0,
171
+ 782,
172
+ 92
173
+ ],
174
+ "parent_crop_xyxy_in_original_parent": null,
175
+ "reasons": []
176
+ },
177
+ {
178
+ "dataset": "bcss",
179
+ "state": "kept",
180
+ "record_id": "c5ad0e55cb2bdb67be052753",
181
+ "source_parent_path": "images/parent/fb/fbfd4abcef1d975d275998acff3be69649f0a424c44992c70ebe5405a1377fb9.png",
182
+ "bbox_xyxy_in_original_parent": [
183
+ 678,
184
+ 728,
185
+ 821,
186
+ 897
187
+ ],
188
+ "parent_crop_xyxy_in_original_parent": null,
189
+ "reasons": []
190
+ },
191
+ {
192
+ "dataset": "lizard",
193
+ "state": "excluded",
194
+ "record_id": "a16ceb415930918683f7b74f",
195
+ "source_parent_path": "images/parent/59/593cf5969b6f18937737e8b7570832ca213f17c0d6277236064ecf8a04c78bad.png",
196
+ "bbox_xyxy_in_original_parent": [
197
+ 515,
198
+ 2055,
199
+ 528,
200
+ 2068
201
+ ],
202
+ "parent_crop_xyxy_in_original_parent": null,
203
+ "reasons": [
204
+ "nucleus_bbox_area_lt_256",
205
+ "short_side_after_reference_resize_lt_8"
206
+ ]
207
+ },
208
+ {
209
+ "dataset": "lizard",
210
+ "state": "excluded",
211
+ "record_id": "f615b8288d3eba5b4ecfca26",
212
+ "source_parent_path": "images/parent/8a/8a2e4acd61b11859818823e7f3995473f93409c88d73a47f419ab4ed4da6b261.png",
213
+ "bbox_xyxy_in_original_parent": [
214
+ 71,
215
+ 26,
216
+ 77,
217
+ 33
218
+ ],
219
+ "parent_crop_xyxy_in_original_parent": null,
220
+ "reasons": [
221
+ "nucleus_short_side_lt_12",
222
+ "nucleus_bbox_area_lt_256",
223
+ "short_side_after_reference_resize_lt_8"
224
+ ]
225
+ },
226
+ {
227
+ "dataset": "lizard",
228
+ "state": "excluded",
229
+ "record_id": "eafee869e00da449f44b9f3a",
230
+ "source_parent_path": "images/parent/1c/1c4f3df568b44cdd68dde110eedba1236576cffef06773d9e2d463f11ef503e7.png",
231
+ "bbox_xyxy_in_original_parent": [
232
+ 141,
233
+ 294,
234
+ 153,
235
+ 305
236
+ ],
237
+ "parent_crop_xyxy_in_original_parent": null,
238
+ "reasons": [
239
+ "nucleus_short_side_lt_12",
240
+ "nucleus_bbox_area_lt_256",
241
+ "short_side_after_reference_resize_lt_8"
242
+ ]
243
+ },
244
+ {
245
+ "dataset": "lizard",
246
+ "state": "excluded",
247
+ "record_id": "1da76b63558fbb140f42e01e",
248
+ "source_parent_path": "images/parent/ac/ac055bde7907056b40d3e6243af78c7b84bd8a1fb4971ea1bf9d7cfc558d1430.png",
249
+ "bbox_xyxy_in_original_parent": [
250
+ 795,
251
+ 1189,
252
+ 808,
253
+ 1205
254
+ ],
255
+ "parent_crop_xyxy_in_original_parent": null,
256
+ "reasons": [
257
+ "nucleus_bbox_area_lt_256"
258
+ ]
259
+ },
260
+ {
261
+ "dataset": "lizard",
262
+ "state": "excluded",
263
+ "record_id": "2211e1a784278c50b3c83185",
264
+ "source_parent_path": "images/parent/7a/7a8181ef3e69916d695da536455340ff704145f1c3ecc41e2a362d3889eaf58c.png",
265
+ "bbox_xyxy_in_original_parent": [
266
+ 144,
267
+ 576,
268
+ 155,
269
+ 589
270
+ ],
271
+ "parent_crop_xyxy_in_original_parent": null,
272
+ "reasons": [
273
+ "nucleus_short_side_lt_12",
274
+ "nucleus_bbox_area_lt_256",
275
+ "short_side_after_reference_resize_lt_8"
276
+ ]
277
+ },
278
+ {
279
+ "dataset": "lizard",
280
+ "state": "excluded",
281
+ "record_id": "218a1d8d098af6a463c060c1",
282
+ "source_parent_path": "images/parent/48/48d62b1700ac87cb34e9f6b79bb1607b69980372244646fa2e7b7ebde9c31782.png",
283
+ "bbox_xyxy_in_original_parent": [
284
+ 1289,
285
+ 996,
286
+ 1297,
287
+ 1004
288
+ ],
289
+ "parent_crop_xyxy_in_original_parent": null,
290
+ "reasons": [
291
+ "nucleus_short_side_lt_12",
292
+ "nucleus_bbox_area_lt_256",
293
+ "short_side_after_reference_resize_lt_8"
294
+ ]
295
+ },
296
+ {
297
+ "dataset": "lizard",
298
+ "state": "kept",
299
+ "record_id": "c46d52288f7ddbd34f0985b2",
300
+ "source_parent_path": "images/parent/f6/f6ed5bd4413cdf6c82b62e392161fdcab08b9feff6580bcdabaa7800368059c7.png",
301
+ "bbox_xyxy_in_original_parent": [
302
+ 504,
303
+ 431,
304
+ 531,
305
+ 447
306
+ ],
307
+ "parent_crop_xyxy_in_original_parent": null,
308
+ "reasons": []
309
+ },
310
+ {
311
+ "dataset": "lizard",
312
+ "state": "kept",
313
+ "record_id": "96f8e6fe73caae5c7f045a33",
314
+ "source_parent_path": "images/parent/d1/d17a983f257433af4f76d88079b2af86755756d0012d945e2d8444125134a10f.png",
315
+ "bbox_xyxy_in_original_parent": [
316
+ 132,
317
+ 709,
318
+ 153,
319
+ 722
320
+ ],
321
+ "parent_crop_xyxy_in_original_parent": null,
322
+ "reasons": []
323
+ },
324
+ {
325
+ "dataset": "lizard",
326
+ "state": "kept",
327
+ "record_id": "dd318ed7fa7d186f1d5819ba",
328
+ "source_parent_path": "images/parent/fb/fb10e28e5131edd1eaca298e69739d3fb161775c7288b707b13eac80f533f18b.png",
329
+ "bbox_xyxy_in_original_parent": [
330
+ 565,
331
+ 625,
332
+ 611,
333
+ 663
334
+ ],
335
+ "parent_crop_xyxy_in_original_parent": null,
336
+ "reasons": []
337
+ },
338
+ {
339
+ "dataset": "lizard",
340
+ "state": "kept",
341
+ "record_id": "2d3cb839168e046f7fae98c8",
342
+ "source_parent_path": "images/parent/14/149c63722786b82fda7332dd348f5ef02e85854a6b775f1f8046c056cdf6e9da.png",
343
+ "bbox_xyxy_in_original_parent": [
344
+ 1127,
345
+ 361,
346
+ 1146,
347
+ 381
348
+ ],
349
+ "parent_crop_xyxy_in_original_parent": null,
350
+ "reasons": []
351
+ },
352
+ {
353
+ "dataset": "lizard",
354
+ "state": "kept",
355
+ "record_id": "9492155692ce11eef98f56f0",
356
+ "source_parent_path": "images/parent/04/04273024060454c78cd412ef1ef3c219cce2c54af996f08a04154439fd6dd3a8.png",
357
+ "bbox_xyxy_in_original_parent": [
358
+ 761,
359
+ 1008,
360
+ 774,
361
+ 1028
362
+ ],
363
+ "parent_crop_xyxy_in_original_parent": null,
364
+ "reasons": []
365
+ },
366
+ {
367
+ "dataset": "lizard",
368
+ "state": "kept",
369
+ "record_id": "de868bd64c43e1376d5329ff",
370
+ "source_parent_path": "images/parent/b2/b27815294eeb80d53960864cefd5266507fbf3beb301027ee30e16a1d2d01272.png",
371
+ "bbox_xyxy_in_original_parent": [
372
+ 297,
373
+ 431,
374
+ 310,
375
+ 451
376
+ ],
377
+ "parent_crop_xyxy_in_original_parent": null,
378
+ "reasons": []
379
+ },
380
+ {
381
+ "dataset": "midogpp",
382
+ "state": "kept",
383
+ "record_id": "1ae05a61661d236b8550e322",
384
+ "source_parent_path": "images/parent/2c/2ca38d3a1468e41f0c4566b140c1846e6402f3a0234b2c7324cc751d64679267.tiff",
385
+ "bbox_xyxy_in_original_parent": [
386
+ 2225,
387
+ 2956,
388
+ 2275,
389
+ 3006
390
+ ],
391
+ "parent_crop_xyxy_in_original_parent": [
392
+ 2048,
393
+ 2048,
394
+ 3072,
395
+ 3072
396
+ ],
397
+ "reasons": []
398
+ },
399
+ {
400
+ "dataset": "midogpp",
401
+ "state": "kept",
402
+ "record_id": "4531a773e9a063f54f4eb0ce",
403
+ "source_parent_path": "images/parent/e9/e9c9e679aed1bb21dd60c7d855e87e322af0e477fee25bb05cedfe68b4e6851c.tiff",
404
+ "bbox_xyxy_in_original_parent": [
405
+ 1792,
406
+ 2972,
407
+ 1842,
408
+ 3022
409
+ ],
410
+ "parent_crop_xyxy_in_original_parent": [
411
+ 1024,
412
+ 2560,
413
+ 2048,
414
+ 3584
415
+ ],
416
+ "reasons": []
417
+ },
418
+ {
419
+ "dataset": "midogpp",
420
+ "state": "kept",
421
+ "record_id": "a480cd8865589de86fd21558",
422
+ "source_parent_path": "images/parent/72/72ce3fd6556eddb2314e24199f3daabdb962f3f493f695c4bfe5cc8d514403ef.tiff",
423
+ "bbox_xyxy_in_original_parent": [
424
+ 4861,
425
+ 1961,
426
+ 4911,
427
+ 2011
428
+ ],
429
+ "parent_crop_xyxy_in_original_parent": [
430
+ 4096,
431
+ 1536,
432
+ 5120,
433
+ 2560
434
+ ],
435
+ "reasons": []
436
+ },
437
+ {
438
+ "dataset": "midogpp",
439
+ "state": "kept",
440
+ "record_id": "aca50aff1689c452f0dcfd00",
441
+ "source_parent_path": "images/parent/c3/c310c9a0aca6410e9ad8047de0e4bf2d99704c70f9ba0ac7069c8a6ee674fc8c.tiff",
442
+ "bbox_xyxy_in_original_parent": [
443
+ 2288,
444
+ 3624,
445
+ 2338,
446
+ 3674
447
+ ],
448
+ "parent_crop_xyxy_in_original_parent": [
449
+ 2048,
450
+ 3072,
451
+ 3072,
452
+ 4096
453
+ ],
454
+ "reasons": []
455
+ },
456
+ {
457
+ "dataset": "midogpp",
458
+ "state": "kept",
459
+ "record_id": "207f7032746e82a625f818ff",
460
+ "source_parent_path": "images/parent/9d/9ddc1ec8a6eb2c4dad1ee883b765ea5321a9081738c62994c8696d02c59303f4.tiff",
461
+ "bbox_xyxy_in_original_parent": [
462
+ 5245,
463
+ 5298,
464
+ 5295,
465
+ 5348
466
+ ],
467
+ "parent_crop_xyxy_in_original_parent": [
468
+ 4608,
469
+ 4388,
470
+ 5632,
471
+ 5412
472
+ ],
473
+ "reasons": []
474
+ },
475
+ {
476
+ "dataset": "midogpp",
477
+ "state": "kept",
478
+ "record_id": "8def4b8e90fbba7f716a4d9e",
479
+ "source_parent_path": "images/parent/0c/0c98f27aa34b2566013f109aab08024efc8abb4bc9d07261247d4e0ec92223c7.tiff",
480
+ "bbox_xyxy_in_original_parent": [
481
+ 6306,
482
+ 2370,
483
+ 6356,
484
+ 2420
485
+ ],
486
+ "parent_crop_xyxy_in_original_parent": [
487
+ 5423,
488
+ 2048,
489
+ 6447,
490
+ 3072
491
+ ],
492
+ "reasons": []
493
+ },
494
+ {
495
+ "dataset": "nucls",
496
+ "state": "excluded",
497
+ "record_id": "94653d77c8696cc156c685c6",
498
+ "source_parent_path": "images/parent/49/492cacb02ebd3175df1e3ee88199ff64d14b1980376e96d4d441afe45becd09a.png",
499
+ "bbox_xyxy_in_original_parent": [
500
+ 308,
501
+ 90,
502
+ 323,
503
+ 105
504
+ ],
505
+ "parent_crop_xyxy_in_original_parent": null,
506
+ "reasons": [
507
+ "nucleus_bbox_area_lt_256"
508
+ ]
509
+ },
510
+ {
511
+ "dataset": "nucls",
512
+ "state": "excluded",
513
+ "record_id": "daa98bdcc519846d047ebaf2",
514
+ "source_parent_path": "images/parent/7f/7fc35d9b337e6e5e39491518a36ef1faa299e092e6fa2245dad95996d007a204.png",
515
+ "bbox_xyxy_in_original_parent": [
516
+ 283,
517
+ 0,
518
+ 340,
519
+ 60
520
+ ],
521
+ "parent_crop_xyxy_in_original_parent": null,
522
+ "reasons": [
523
+ "nucleus_touches_source_parent_boundary"
524
+ ]
525
+ },
526
+ {
527
+ "dataset": "nucls",
528
+ "state": "excluded",
529
+ "record_id": "44b49baacaa17f915c70a6b8",
530
+ "source_parent_path": "images/parent/e5/e5675c003352d1dccbe891424164a4ac9af51cfedf476971c8c1f5b25f8b940c.png",
531
+ "bbox_xyxy_in_original_parent": [
532
+ 86,
533
+ 347,
534
+ 145,
535
+ 402
536
+ ],
537
+ "parent_crop_xyxy_in_original_parent": null,
538
+ "reasons": [
539
+ "nucleus_touches_source_parent_boundary"
540
+ ]
541
+ },
542
+ {
543
+ "dataset": "nucls",
544
+ "state": "excluded",
545
+ "record_id": "9b3a9f3512e597c44483c8e6",
546
+ "source_parent_path": "images/parent/de/de7b23dae1d68f2a9fbf985c9e0e08ed9aaa487cf332144538a45fc394b8e320.png",
547
+ "bbox_xyxy_in_original_parent": [
548
+ 0,
549
+ 4,
550
+ 30,
551
+ 56
552
+ ],
553
+ "parent_crop_xyxy_in_original_parent": null,
554
+ "reasons": [
555
+ "nucleus_touches_source_parent_boundary"
556
+ ]
557
+ },
558
+ {
559
+ "dataset": "nucls",
560
+ "state": "excluded",
561
+ "record_id": "7bdf31c2aa45b3763d884f27",
562
+ "source_parent_path": "images/parent/80/805f3fb956694a69e811616101fc24b57d1828cc7c14e59b76b74ca492cc3640.png",
563
+ "bbox_xyxy_in_original_parent": [
564
+ 101,
565
+ 116,
566
+ 114,
567
+ 131
568
+ ],
569
+ "parent_crop_xyxy_in_original_parent": null,
570
+ "reasons": [
571
+ "nucleus_bbox_area_lt_256"
572
+ ]
573
+ },
574
+ {
575
+ "dataset": "nucls",
576
+ "state": "excluded",
577
+ "record_id": "71aa321dc677a2923c1277b9",
578
+ "source_parent_path": "images/parent/2a/2acf6d5943a82aea33fae38598e65bc9991e927b7d7b765be96c0884fb922fe5.png",
579
+ "bbox_xyxy_in_original_parent": [
580
+ 167,
581
+ 335,
582
+ 217,
583
+ 395
584
+ ],
585
+ "parent_crop_xyxy_in_original_parent": null,
586
+ "reasons": [
587
+ "nucleus_touches_source_parent_boundary"
588
+ ]
589
+ },
590
+ {
591
+ "dataset": "nucls",
592
+ "state": "kept",
593
+ "record_id": "d46d7637b5d689a25d3da8e4",
594
+ "source_parent_path": "images/parent/a8/a872b3cbbc214d396b33a1797e35d5e561d5181ded5b86175806a29bc92737bc.png",
595
+ "bbox_xyxy_in_original_parent": [
596
+ 294,
597
+ 163,
598
+ 339,
599
+ 227
600
+ ],
601
+ "parent_crop_xyxy_in_original_parent": null,
602
+ "reasons": []
603
+ },
604
+ {
605
+ "dataset": "nucls",
606
+ "state": "kept",
607
+ "record_id": "442a0b44e8e015b4ff1a55fa",
608
+ "source_parent_path": "images/parent/7c/7c81dbaa199789f8c7ffa0054be779a1102c3d2735f2dc0fc57dfdc3051c1a67.png",
609
+ "bbox_xyxy_in_original_parent": [
610
+ 17,
611
+ 80,
612
+ 42,
613
+ 105
614
+ ],
615
+ "parent_crop_xyxy_in_original_parent": null,
616
+ "reasons": []
617
+ },
618
+ {
619
+ "dataset": "nucls",
620
+ "state": "kept",
621
+ "record_id": "c900e5e0937d2b7994564c36",
622
+ "source_parent_path": "images/parent/f1/f137c67eee240e0febecfac2494891136b4525b02bad772c66c3899cc49c6b6a.png",
623
+ "bbox_xyxy_in_original_parent": [
624
+ 9,
625
+ 88,
626
+ 46,
627
+ 132
628
+ ],
629
+ "parent_crop_xyxy_in_original_parent": null,
630
+ "reasons": []
631
+ },
632
+ {
633
+ "dataset": "nucls",
634
+ "state": "kept",
635
+ "record_id": "a543b15137b81ffb3149593c",
636
+ "source_parent_path": "images/parent/65/6548b50897c023d9e8156891c53baaca833782108ff5708daa97d968d1e4a1c4.png",
637
+ "bbox_xyxy_in_original_parent": [
638
+ 16,
639
+ 74,
640
+ 37,
641
+ 98
642
+ ],
643
+ "parent_crop_xyxy_in_original_parent": null,
644
+ "reasons": []
645
+ },
646
+ {
647
+ "dataset": "nucls",
648
+ "state": "kept",
649
+ "record_id": "439790a3d564a01ff0b908c7",
650
+ "source_parent_path": "images/parent/f5/f540bf6126b58137de5ed2679f9c90870f5d10b3b3537d0a3019f60909ea0880.png",
651
+ "bbox_xyxy_in_original_parent": [
652
+ 112,
653
+ 234,
654
+ 135,
655
+ 256
656
+ ],
657
+ "parent_crop_xyxy_in_original_parent": null,
658
+ "reasons": []
659
+ },
660
+ {
661
+ "dataset": "nucls",
662
+ "state": "kept",
663
+ "record_id": "cec7793d1ad3e6c76ec19d54",
664
+ "source_parent_path": "images/parent/c7/c7585b3f0f38f38f945f9e643ffbd5a182e8bccf847777dfe538223a36836c0d.png",
665
+ "bbox_xyxy_in_original_parent": [
666
+ 225,
667
+ 296,
668
+ 247,
669
+ 330
670
+ ],
671
+ "parent_crop_xyxy_in_original_parent": null,
672
+ "reasons": []
673
+ },
674
+ {
675
+ "dataset": "nuinsseg",
676
+ "state": "excluded",
677
+ "record_id": "76dfedb243006e2cedd58e00",
678
+ "source_parent_path": "images/parent/82/8242e6b27e29eb5f200b0009c2e180b0e454979664ec98b3b19433902ee7d842.png",
679
+ "bbox_xyxy_in_original_parent": [
680
+ 182,
681
+ 0,
682
+ 224,
683
+ 19
684
+ ],
685
+ "parent_crop_xyxy_in_original_parent": null,
686
+ "reasons": [
687
+ "nucleus_touches_source_parent_boundary"
688
+ ]
689
+ },
690
+ {
691
+ "dataset": "nuinsseg",
692
+ "state": "excluded",
693
+ "record_id": "1536253d86c6522e9cc17823",
694
+ "source_parent_path": "images/parent/b5/b58face8d7b83509d43d74bb4461fcc79920be4c738b1f1396c806d044194fd5.png",
695
+ "bbox_xyxy_in_original_parent": [
696
+ 90,
697
+ 74,
698
+ 100,
699
+ 83
700
+ ],
701
+ "parent_crop_xyxy_in_original_parent": null,
702
+ "reasons": [
703
+ "nucleus_short_side_lt_12",
704
+ "nucleus_bbox_area_lt_256"
705
+ ]
706
+ },
707
+ {
708
+ "dataset": "nuinsseg",
709
+ "state": "excluded",
710
+ "record_id": "1f0f9828fe43cfee26dfbe81",
711
+ "source_parent_path": "images/parent/90/90d5d387914dc968a00f318b65b1bce3e68d57bc87a685dba914a310b3422c3e.png",
712
+ "bbox_xyxy_in_original_parent": [
713
+ 113,
714
+ 493,
715
+ 161,
716
+ 512
717
+ ],
718
+ "parent_crop_xyxy_in_original_parent": null,
719
+ "reasons": [
720
+ "nucleus_touches_source_parent_boundary"
721
+ ]
722
+ },
723
+ {
724
+ "dataset": "nuinsseg",
725
+ "state": "excluded",
726
+ "record_id": "9c4baf45b948b9cd7d4d3daf",
727
+ "source_parent_path": "images/parent/ac/acd1d381394aeb273428d00a603149fc431d7c903b09cc2d478802a80a17db33.png",
728
+ "bbox_xyxy_in_original_parent": [
729
+ 0,
730
+ 319,
731
+ 13,
732
+ 348
733
+ ],
734
+ "parent_crop_xyxy_in_original_parent": null,
735
+ "reasons": [
736
+ "nucleus_touches_source_parent_boundary"
737
+ ]
738
+ },
739
+ {
740
+ "dataset": "nuinsseg",
741
+ "state": "excluded",
742
+ "record_id": "c54666875a9ff70dd11dbd0f",
743
+ "source_parent_path": "images/parent/64/646f39d002cf030f26524d71214036a109d02ad5d59967a69ef41951b546aada.png",
744
+ "bbox_xyxy_in_original_parent": [
745
+ 283,
746
+ 495,
747
+ 338,
748
+ 512
749
+ ],
750
+ "parent_crop_xyxy_in_original_parent": null,
751
+ "reasons": [
752
+ "nucleus_touches_source_parent_boundary"
753
+ ]
754
+ },
755
+ {
756
+ "dataset": "nuinsseg",
757
+ "state": "excluded",
758
+ "record_id": "86dd7d2ffc4bfda29c870175",
759
+ "source_parent_path": "images/parent/f2/f21eb89a99a5c07790882fed6df0583f0a5f587ebbab8c0b782dfe35b5e26112.png",
760
+ "bbox_xyxy_in_original_parent": [
761
+ 477,
762
+ 306,
763
+ 495,
764
+ 320
765
+ ],
766
+ "parent_crop_xyxy_in_original_parent": null,
767
+ "reasons": [
768
+ "nucleus_bbox_area_lt_256"
769
+ ]
770
+ },
771
+ {
772
+ "dataset": "nuinsseg",
773
+ "state": "kept",
774
+ "record_id": "9759a1e1d15fcf7193ab2b40",
775
+ "source_parent_path": "images/parent/fe/fe0b2bb74e4d62baa2ce3e40325bb0e50345a9960526430e114f162517cf4ab2.png",
776
+ "bbox_xyxy_in_original_parent": [
777
+ 324,
778
+ 475,
779
+ 364,
780
+ 510
781
+ ],
782
+ "parent_crop_xyxy_in_original_parent": null,
783
+ "reasons": []
784
+ },
785
+ {
786
+ "dataset": "nuinsseg",
787
+ "state": "kept",
788
+ "record_id": "746546714257ff948c8d1e79",
789
+ "source_parent_path": "images/parent/af/af7d1f8dca4b12179642a3200f8cdd83885c05353ac73e3cd1b7c4c0015e0a34.png",
790
+ "bbox_xyxy_in_original_parent": [
791
+ 354,
792
+ 320,
793
+ 388,
794
+ 350
795
+ ],
796
+ "parent_crop_xyxy_in_original_parent": null,
797
+ "reasons": []
798
+ },
799
+ {
800
+ "dataset": "nuinsseg",
801
+ "state": "kept",
802
+ "record_id": "5078f4ccc3a741edaf67cc58",
803
+ "source_parent_path": "images/parent/c2/c253d2636e791c4adb0b514024b48af97de44a10f3fd564bf88e9e22ad67cd0b.png",
804
+ "bbox_xyxy_in_original_parent": [
805
+ 244,
806
+ 429,
807
+ 276,
808
+ 449
809
+ ],
810
+ "parent_crop_xyxy_in_original_parent": null,
811
+ "reasons": []
812
+ },
813
+ {
814
+ "dataset": "nuinsseg",
815
+ "state": "kept",
816
+ "record_id": "85114ccd45b91afe5c2aee0e",
817
+ "source_parent_path": "images/parent/8d/8deeb6d465568f4de0f1b0a19eb98b96a14e902a25470aabdfec0dd8e00689a4.png",
818
+ "bbox_xyxy_in_original_parent": [
819
+ 448,
820
+ 174,
821
+ 483,
822
+ 195
823
+ ],
824
+ "parent_crop_xyxy_in_original_parent": null,
825
+ "reasons": []
826
+ },
827
+ {
828
+ "dataset": "nuinsseg",
829
+ "state": "kept",
830
+ "record_id": "78a3344a73c4ee4a3a699ed7",
831
+ "source_parent_path": "images/parent/75/7576f8aaabc2aa14dbfd96309b7e93a0b2786ba3b0462d1c31c1e554b3033c62.png",
832
+ "bbox_xyxy_in_original_parent": [
833
+ 216,
834
+ 321,
835
+ 253,
836
+ 359
837
+ ],
838
+ "parent_crop_xyxy_in_original_parent": null,
839
+ "reasons": []
840
+ },
841
+ {
842
+ "dataset": "nuinsseg",
843
+ "state": "kept",
844
+ "record_id": "b8201de7948d7635b317eda3",
845
+ "source_parent_path": "images/parent/7b/7bc80d259e356b81ee76ad63fa3cece2fe6210a17057a5cb1058d99499cbb9dc.png",
846
+ "bbox_xyxy_in_original_parent": [
847
+ 94,
848
+ 78,
849
+ 148,
850
+ 111
851
+ ],
852
+ "parent_crop_xyxy_in_original_parent": null,
853
+ "reasons": []
854
+ },
855
+ {
856
+ "dataset": "pannuke",
857
+ "state": "excluded",
858
+ "record_id": "49a0df6ac508eb53143f8574",
859
+ "source_parent_path": "images/parent/37/3702952de4c3fe24d0dfec0eca90fa4135f0fd794d3e8cb68d60b08a029c28cc.png",
860
+ "bbox_xyxy_in_original_parent": [
861
+ 232,
862
+ 0,
863
+ 254,
864
+ 9
865
+ ],
866
+ "parent_crop_xyxy_in_original_parent": null,
867
+ "reasons": [
868
+ "nucleus_short_side_lt_12",
869
+ "nucleus_bbox_area_lt_256",
870
+ "nucleus_touches_source_parent_boundary"
871
+ ]
872
+ },
873
+ {
874
+ "dataset": "pannuke",
875
+ "state": "excluded",
876
+ "record_id": "2c108436437c84eddb259476",
877
+ "source_parent_path": "images/parent/4a/4a4706a098b1807c61b1cec251c9bb5b1a6c7928a3fbc59d23e43568294cfbbb.png",
878
+ "bbox_xyxy_in_original_parent": [
879
+ 103,
880
+ 51,
881
+ 118,
882
+ 67
883
+ ],
884
+ "parent_crop_xyxy_in_original_parent": null,
885
+ "reasons": [
886
+ "nucleus_bbox_area_lt_256"
887
+ ]
888
+ },
889
+ {
890
+ "dataset": "pannuke",
891
+ "state": "excluded",
892
+ "record_id": "846aa9db0dc298ba4858262d",
893
+ "source_parent_path": "images/parent/1e/1e084e2e4de704e04a13523384ab582cf0ecafadf9216d7b1dfba93f3ea6a18d.png",
894
+ "bbox_xyxy_in_original_parent": [
895
+ 42,
896
+ 33,
897
+ 52,
898
+ 43
899
+ ],
900
+ "parent_crop_xyxy_in_original_parent": null,
901
+ "reasons": [
902
+ "nucleus_short_side_lt_12",
903
+ "nucleus_bbox_area_lt_256"
904
+ ]
905
+ },
906
+ {
907
+ "dataset": "pannuke",
908
+ "state": "excluded",
909
+ "record_id": "81831575488b71b02ffcc638",
910
+ "source_parent_path": "images/parent/8c/8cd9ddf8a5e7aff754279e96510f247460288a7b9732138d6a05e5665330c528.png",
911
+ "bbox_xyxy_in_original_parent": [
912
+ 46,
913
+ 0,
914
+ 69,
915
+ 7
916
+ ],
917
+ "parent_crop_xyxy_in_original_parent": null,
918
+ "reasons": [
919
+ "nucleus_short_side_lt_12",
920
+ "nucleus_bbox_area_lt_256",
921
+ "nucleus_touches_source_parent_boundary",
922
+ "short_side_after_reference_resize_lt_8"
923
+ ]
924
+ },
925
+ {
926
+ "dataset": "pannuke",
927
+ "state": "excluded",
928
+ "record_id": "dddfdf138643fac098aa4d52",
929
+ "source_parent_path": "images/parent/60/608a551944bd20d657f1a1c3183cf549274c2c54c2e7c9a4690a0262035040cf.png",
930
+ "bbox_xyxy_in_original_parent": [
931
+ 233,
932
+ 66,
933
+ 256,
934
+ 85
935
+ ],
936
+ "parent_crop_xyxy_in_original_parent": null,
937
+ "reasons": [
938
+ "nucleus_touches_source_parent_boundary"
939
+ ]
940
+ },
941
+ {
942
+ "dataset": "pannuke",
943
+ "state": "excluded",
944
+ "record_id": "a7fa3f0e29576753da163396",
945
+ "source_parent_path": "images/parent/6a/6a84ddc958c1236c986d77410f29900610a7dc88f75945b768e9df1dbb353842.png",
946
+ "bbox_xyxy_in_original_parent": [
947
+ 55,
948
+ 0,
949
+ 86,
950
+ 22
951
+ ],
952
+ "parent_crop_xyxy_in_original_parent": null,
953
+ "reasons": [
954
+ "nucleus_touches_source_parent_boundary"
955
+ ]
956
+ },
957
+ {
958
+ "dataset": "pannuke",
959
+ "state": "kept",
960
+ "record_id": "a2b695c1c3e5973c16664af6",
961
+ "source_parent_path": "images/parent/5a/5a278ba86c5915f62ccc0f29d205498fadf9198bb4848cafc409371f5f5d8f7e.png",
962
+ "bbox_xyxy_in_original_parent": [
963
+ 78,
964
+ 83,
965
+ 101,
966
+ 104
967
+ ],
968
+ "parent_crop_xyxy_in_original_parent": null,
969
+ "reasons": []
970
+ },
971
+ {
972
+ "dataset": "pannuke",
973
+ "state": "kept",
974
+ "record_id": "da0d9aba08c8aaabd225d50c",
975
+ "source_parent_path": "images/parent/40/40f47ee3c5decdaae2d9aa573834aa195c5860f693a4153eee199825ea54883b.png",
976
+ "bbox_xyxy_in_original_parent": [
977
+ 220,
978
+ 156,
979
+ 239,
980
+ 186
981
+ ],
982
+ "parent_crop_xyxy_in_original_parent": null,
983
+ "reasons": []
984
+ },
985
+ {
986
+ "dataset": "pannuke",
987
+ "state": "kept",
988
+ "record_id": "bc868a251341ac2f31cbc4f4",
989
+ "source_parent_path": "images/parent/06/063fde55dd8292cfffdc99d4e239c3b7acc599dbae8236368f73167d1761da0f.png",
990
+ "bbox_xyxy_in_original_parent": [
991
+ 191,
992
+ 68,
993
+ 239,
994
+ 90
995
+ ],
996
+ "parent_crop_xyxy_in_original_parent": null,
997
+ "reasons": []
998
+ },
999
+ {
1000
+ "dataset": "pannuke",
1001
+ "state": "kept",
1002
+ "record_id": "aea6eee6b1897d7888821430",
1003
+ "source_parent_path": "images/parent/e1/e1671dc0e904fe115049d3c78d28ece9fbd8831e0efd05b1518f436ad158dabc.png",
1004
+ "bbox_xyxy_in_original_parent": [
1005
+ 133,
1006
+ 126,
1007
+ 157,
1008
+ 151
1009
+ ],
1010
+ "parent_crop_xyxy_in_original_parent": null,
1011
+ "reasons": []
1012
+ },
1013
+ {
1014
+ "dataset": "pannuke",
1015
+ "state": "kept",
1016
+ "record_id": "5d1edf9d4d893064c3d81406",
1017
+ "source_parent_path": "images/parent/95/95c2f6d4894966f7383ef8ed18d6f71d7ca6a3e04a6c38c389073a771c7b496f.png",
1018
+ "bbox_xyxy_in_original_parent": [
1019
+ 145,
1020
+ 159,
1021
+ 193,
1022
+ 175
1023
+ ],
1024
+ "parent_crop_xyxy_in_original_parent": null,
1025
+ "reasons": []
1026
+ },
1027
+ {
1028
+ "dataset": "pannuke",
1029
+ "state": "kept",
1030
+ "record_id": "a9bc34a3366c4b77155d9e3c",
1031
+ "source_parent_path": "images/parent/89/8908b624bb734e8a7d58181c89a63b8aeedb6e4e13c4c7adfaa890065ca76bbe.png",
1032
+ "bbox_xyxy_in_original_parent": [
1033
+ 55,
1034
+ 152,
1035
+ 80,
1036
+ 204
1037
+ ],
1038
+ "parent_crop_xyxy_in_original_parent": null,
1039
+ "reasons": []
1040
+ },
1041
+ {
1042
+ "dataset": "refpath_train",
1043
+ "state": "excluded",
1044
+ "record_id": "343316244c3c015adcd9339b",
1045
+ "source_parent_path": "images/parent/fb/fb18b9e0ee7f2f9a63e868ea4828f50c5c808ad1458aa6ca3497861d93126115.jpg",
1046
+ "bbox_xyxy_in_original_parent": [
1047
+ 0,
1048
+ 1783,
1049
+ 62,
1050
+ 1894
1051
+ ],
1052
+ "parent_crop_xyxy_in_original_parent": null,
1053
+ "reasons": [
1054
+ "region_short_side_lt_64"
1055
+ ]
1056
+ },
1057
+ {
1058
+ "dataset": "refpath_train",
1059
+ "state": "excluded",
1060
+ "record_id": "0db8e51f1f1c8a8a52ad6c26",
1061
+ "source_parent_path": "images/parent/f8/f87c9d0fca6493c8b9ecd062d1e7fe1e395d71f7b228fdd70be56ce3c7befa1a.jpg",
1062
+ "bbox_xyxy_in_original_parent": [
1063
+ 0,
1064
+ 832,
1065
+ 60,
1066
+ 1024
1067
+ ],
1068
+ "parent_crop_xyxy_in_original_parent": null,
1069
+ "reasons": [
1070
+ "region_short_side_lt_64"
1071
+ ]
1072
+ },
1073
+ {
1074
+ "dataset": "refpath_train",
1075
+ "state": "excluded",
1076
+ "record_id": "d54f4950527e44ef4f90185a",
1077
+ "source_parent_path": "images/parent/5d/5d01c435453e26b2442cd19fe5c2c59ce3ac562f4224dc10abe454c68ea3e6b1.jpg",
1078
+ "bbox_xyxy_in_original_parent": [
1079
+ 1352,
1080
+ 0,
1081
+ 1518,
1082
+ 44
1083
+ ],
1084
+ "parent_crop_xyxy_in_original_parent": null,
1085
+ "reasons": [
1086
+ "region_short_side_lt_64"
1087
+ ]
1088
+ },
1089
+ {
1090
+ "dataset": "refpath_train",
1091
+ "state": "excluded",
1092
+ "record_id": "95729040f38911ac7d19198c",
1093
+ "source_parent_path": "images/parent/86/86320e3ec87c7cc898daba9780dcb199780316f4d394b8b86aaee57917da9762.jpg",
1094
+ "bbox_xyxy_in_original_parent": [
1095
+ 179,
1096
+ 0,
1097
+ 333,
1098
+ 63
1099
+ ],
1100
+ "parent_crop_xyxy_in_original_parent": null,
1101
+ "reasons": [
1102
+ "region_short_side_lt_64"
1103
+ ]
1104
+ },
1105
+ {
1106
+ "dataset": "refpath_train",
1107
+ "state": "excluded",
1108
+ "record_id": "fce3ea3e062f5d340bcc723d",
1109
+ "source_parent_path": "images/parent/75/7516eefbf1de0ee92b890ffdfb91d2bc32fd6ef77540f2c1f9ef3df9d72cd823.jpg",
1110
+ "bbox_xyxy_in_original_parent": [
1111
+ 56,
1112
+ 0,
1113
+ 207,
1114
+ 50
1115
+ ],
1116
+ "parent_crop_xyxy_in_original_parent": null,
1117
+ "reasons": [
1118
+ "region_short_side_lt_64"
1119
+ ]
1120
+ },
1121
+ {
1122
+ "dataset": "refpath_train",
1123
+ "state": "excluded",
1124
+ "record_id": "13ca414e42c8aad13a8a26fd",
1125
+ "source_parent_path": "images/parent/a3/a3fefdc338aa45d8ef2f55c0b783ccf902fe7f9fd8533445ee7254c56f7d04ad.jpg",
1126
+ "bbox_xyxy_in_original_parent": [
1127
+ 241,
1128
+ 0,
1129
+ 784,
1130
+ 88
1131
+ ],
1132
+ "parent_crop_xyxy_in_original_parent": null,
1133
+ "reasons": [
1134
+ "region_aspect_ratio_gt_6"
1135
+ ]
1136
+ },
1137
+ {
1138
+ "dataset": "refpath_train",
1139
+ "state": "kept",
1140
+ "record_id": "22eb198bad656ede0cfae48f",
1141
+ "source_parent_path": "images/parent/9b/9b96dcdaeadf89312d938a51980eba2e2736da2a8a38f7b4847c8bf59e6aec16.jpg",
1142
+ "bbox_xyxy_in_original_parent": [
1143
+ 413,
1144
+ 0,
1145
+ 702,
1146
+ 112
1147
+ ],
1148
+ "parent_crop_xyxy_in_original_parent": null,
1149
+ "reasons": []
1150
+ },
1151
+ {
1152
+ "dataset": "refpath_train",
1153
+ "state": "kept",
1154
+ "record_id": "999373e0f6e8d8243bd40431",
1155
+ "source_parent_path": "images/parent/b6/b6068873cf9ec38dcebf8c2125aa36d6b8ed511a6fedf89c31bc28f314125f82.jpg",
1156
+ "bbox_xyxy_in_original_parent": [
1157
+ 256,
1158
+ 363,
1159
+ 424,
1160
+ 498
1161
+ ],
1162
+ "parent_crop_xyxy_in_original_parent": null,
1163
+ "reasons": []
1164
+ },
1165
+ {
1166
+ "dataset": "refpath_train",
1167
+ "state": "kept",
1168
+ "record_id": "74ac8515f807bdd86104e998",
1169
+ "source_parent_path": "images/parent/4d/4d13535c34c88b2d4dc1c471cfefb224ee6449c304567095cd94b7b90c943b28.jpg",
1170
+ "bbox_xyxy_in_original_parent": [
1171
+ 834,
1172
+ 196,
1173
+ 914,
1174
+ 290
1175
+ ],
1176
+ "parent_crop_xyxy_in_original_parent": null,
1177
+ "reasons": []
1178
+ },
1179
+ {
1180
+ "dataset": "refpath_train",
1181
+ "state": "kept",
1182
+ "record_id": "9d41393c17c28aa2be9ee115",
1183
+ "source_parent_path": "images/parent/a6/a6eac3bd28a69d09d51c68b055b388f411337089faff3cb05b6aa2f46fb5ec15.jpg",
1184
+ "bbox_xyxy_in_original_parent": [
1185
+ 148,
1186
+ 949,
1187
+ 393,
1188
+ 1024
1189
+ ],
1190
+ "parent_crop_xyxy_in_original_parent": null,
1191
+ "reasons": []
1192
+ },
1193
+ {
1194
+ "dataset": "refpath_train",
1195
+ "state": "kept",
1196
+ "record_id": "419e0f9e01847a71285ad613",
1197
+ "source_parent_path": "images/parent/a8/a8c8e8ab4553d0553fd2466503985a64fd2eaa01d0268b57eb7e52b26f81e30d.jpg",
1198
+ "bbox_xyxy_in_original_parent": [
1199
+ 819,
1200
+ 802,
1201
+ 997,
1202
+ 920
1203
+ ],
1204
+ "parent_crop_xyxy_in_original_parent": null,
1205
+ "reasons": []
1206
+ },
1207
+ {
1208
+ "dataset": "refpath_train",
1209
+ "state": "kept",
1210
+ "record_id": "b9fabbfa6849f0529c0e500d",
1211
+ "source_parent_path": "images/parent/84/84a20bf3f40495212f6a501c2a9fda8bff67f6ffc5abd7aa72e87bc4578269f7.jpg",
1212
+ "bbox_xyxy_in_original_parent": [
1213
+ 0,
1214
+ 32,
1215
+ 314,
1216
+ 245
1217
+ ],
1218
+ "parent_crop_xyxy_in_original_parent": null,
1219
+ "reasons": []
1220
+ }
1221
+ ]
1222
+ }
package/sampling_config.json ADDED
@@ -0,0 +1,13 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "unit": "dataset, then parent/query, then an eligible target",
3
+ "dataset_probabilities": {
4
+ "refpath_train": 0.25,
5
+ "pannuke": 0.2,
6
+ "nucls": 0.15,
7
+ "nuinsseg": 0.15,
8
+ "bcss": 0.1,
9
+ "midogpp": 0.1,
10
+ "lizard": 0.05
11
+ },
12
+ "applied_to_export": false
13
+ }
package/storage_compaction.json ADDED
@@ -0,0 +1,398 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "created_at": "2026-10-10T04:05:58+08:00",
3
+ "root": "/storage/ssd1/jiahao/ZoomPath/auxiliary_training_v2",
4
+ "backup_root": "/jhcnas3/jiahao/ZoomPath/auxiliary_training_v2",
5
+ "audit_root": "/storage/ssd1/jiahao/ZoomPath/audit/auxiliary_quality_filter_20261010",
6
+ "canonical_package": "/storage/ssd1/jiahao/ZoomPath/auxiliary_training_v2/zoompath_training_v4",
7
+ "filtered_manifest_sha256": "eeda70abfec170771f9084d2330011dcfa8443c2132ea8a2e8a576296e78fa85",
8
+ "rows_before": 618432,
9
+ "rows_kept": 235346,
10
+ "rows_excluded": 383086,
11
+ "backup_checks": [
12
+ {
13
+ "path": "refpath_train",
14
+ "backup_verified": true,
15
+ "content_hashes": {
16
+ "SOURCE_NOTICE.md": "9458a0f741aa23e8ce835440fabe73c81579c0ebc3b61c3c202aaace85547a8a",
17
+ "exclusions.json": "f8ace7ce129c0863de87612b7a69999e80109b43298af39d05942ddd355460e8",
18
+ "manifest.jsonl": "8de28a6a037cf6f8cfce0942a340bc8e4dc58f2bec93c0ab3d470370ac15c374",
19
+ "sample_records.json": "5b9d41ac2417e316eff3fe34833834e7c9f7f28e8a9db5a0e3ea152f7f31dd4d",
20
+ "summary.json": "7a952acc54678703668c1de5e7f6ed3c2364c4e01b89328f88066d27aaeaa6ab",
21
+ "validation.json": "eefc9d93e5deed17cf57df6b9ba138d5fc929d14d214b4cc8e5689671d0b8cbf",
22
+ "child/00/0005192851f6362a1644dc6f.png": "759fe39b5dd849f398739205f51285718bb1f3a85f32bbee27ed70d1de3680bf",
23
+ "child/00/00051a7de488fa6f9921bb67.png": "c84afa171aaa5ad3952b4b6bc2c5de9ba7badb5e6ecca6353990d4d6b19885ea",
24
+ "child/00/0008b840c4c603e822700f71.png": "50d5fce6461285de71347d07b87fc9ac3f32ef54722e37c54e17c236af6d5220",
25
+ "child/00/000bb096ef5880dce1cfc8f5.png": "319c062e450ff49cf664e689c773db29d628841435d2780fa8dba5a91e5b9b38"
26
+ },
27
+ "verification": "all relative file paths and sizes; top-level metadata and sampled PNG SHA-256"
28
+ },
29
+ {
30
+ "path": "pannuke",
31
+ "backup_verified": true,
32
+ "content_hashes": {
33
+ "SOURCE_NOTICE.md": "747199219a8fb942440f00338010d2048c17f73eebd57fe086cdafca85163487",
34
+ "exclusions.json": "ae3df7539ada686a2f3714d75e584ef6403a4e2e998b38487f9189e43088d261",
35
+ "manifest.jsonl": "28e2746c98fc739f8fa67672002d18673826f8dad5a8d1ef8a1beff85d35f651",
36
+ "sample_records.json": "7898d3c74d6f123da2d16d91c097ac14b1f68a33bd2178510c5cf97c60f40f69",
37
+ "summary.json": "03630de95bba8a43fd7ce75227b24a8545e9633a431a6fa038136aaed6ab92fc",
38
+ "validation.json": "023c9a2956e9284be8e8b1829d97e29f5dfec3112471671052afbc7bc76643d1",
39
+ "child/00/000049c175b499d62dc64dd4.png": "66914b7556d0ac66c9d712cf1fb0f4ead0a70f4f1c1e165c400db9e1c6dd1553",
40
+ "child/00/0001706a1c473042d9bac88b.png": "044458a49753e09f55942aa800d0757d39144226e661f7411d4cbb5d1f052ad9",
41
+ "child/00/00018b377f56739fc2a3e7ef.png": "9493a870f03fbd7e8091dba9b3d4712dd53552d8c2aff6673068f3137c35a7dd",
42
+ "child/00/000198b9b8bb783799e45b64.png": "53f2ee8ed74e3889502fa57c88624366a888a1ad0aa08d7e25ec79139399878e",
43
+ "parent/00/000c8298029f96aa13316298.png": "5f4f9e5803b4d4b753924f409136e41b4958d61927a47e295dfe93247f35688b",
44
+ "parent/00/000cd860e759e3019000aa9a.png": "e1d058d56fd21e85f239922e9aee95747be458f28d516b2df5c6982e304a05f9",
45
+ "parent/00/001431eabb5b1c1fc2856515.png": "0142b2b4003799b54891ee7b11846543c5942a485124df45380a0595a88236b7",
46
+ "parent/00/00406410872511084e47a394.png": "653d96dc90e5010068b4d97a383aea84171ba2b38e894395bd5c38a737d17a00"
47
+ },
48
+ "verification": "all relative file paths and sizes; top-level metadata and sampled PNG SHA-256"
49
+ },
50
+ {
51
+ "path": "nuinsseg",
52
+ "backup_verified": true,
53
+ "content_hashes": {
54
+ "SOURCE_NOTICE.md": "a159ea5d3a6ab43c820aef6669bd0dba646895bcadc28555a73ff4bebd3e51b6",
55
+ "exclusions.json": "b02d3761078978ef052d3240ef1b0a5310f973fe85954729c76453ed66fb8df2",
56
+ "manifest.jsonl": "91c60ac18c12a75d810e120f6eb71d2d370511bb2eda3e616448f8bffe7973ac",
57
+ "sample_records.json": "ad1ad525042d8151d5e4798520e04eb2dc6a89c0d5c7d68f73201226710d9252",
58
+ "summary.json": "b51907e3b5a950708b452a1824076daf4836dbc66473864f1abff12e4525c119",
59
+ "validation.json": "6294524663a852872a3a3a9c549f604481fb2c3bd12530f3e573471313c5d881",
60
+ "child/00/00003452771abd8a2b648cfe.png": "e091802c57f859303655eac5b1b17d8eb8b01a0d0110439d919969d44150330f",
61
+ "child/00/0000bc4140ce341a2566c72e.png": "a803878fd6b1c5b40f80b00f67e32adb7ee6a3d6b64bb50bf6820bb50ece3efd",
62
+ "child/00/0000cf66c74b21bad867f0be.png": "1be71f97347cc3254edd35f0a929d698545d4ab5b96d4671692d1ba5926f5b71",
63
+ "child/00/000458b616ba2c775e5a4f2a.png": "063c9a2254c756d2d3bdcd1172c712f6bdc50f12d4ade9414df44b80b7888396"
64
+ },
65
+ "verification": "all relative file paths and sizes; top-level metadata and sampled PNG SHA-256"
66
+ },
67
+ {
68
+ "path": "nucls",
69
+ "backup_verified": true,
70
+ "content_hashes": {
71
+ "SOURCE_NOTICE.md": "c0a0740cb0546c0a53c5ba0ffd40fcff2f42ddf62ad924d382d2a65c19d1e2ea",
72
+ "exclusions.json": "677024dbd5e10928da0bc0e70ffe60f78ae5611c620e626d94b29db2770b5210",
73
+ "manifest.jsonl": "4aee47f86e437580d4f8f26239579c323bbb39ba42394958ba301e72ef39f08f",
74
+ "sample_records.json": "6140dec341fdd0c2c17bda02751cedf1b3ccdbed0f062355d5d96313535f7548",
75
+ "summary.json": "71ce1a5b7f12ec582fec69a21e6c1ba632ed7f6a86152f614d67f6487629d6b1",
76
+ "validation.json": "4777f8524589049f05256c1ec83de5b36cbc9e6f73995ab599178ad9605bb138",
77
+ "child/00/0004280a7a8ae234758aca60.png": "48cfbdad36401c1ab7289122b75f8bc62e70f2fc4cd6f8b423fa6a1c3982a755",
78
+ "child/00/0004a92ef5a5c347fff3db88.png": "5662eb217cd326c1bea29e1b5358179be15f635ac9537b43386ea2f789c4efb7",
79
+ "child/00/000570b3d0a8ed81a91dbde6.png": "d692fcba3ef297191978a5cf94cd0811e71df83f746ce713b5eefdb235656b2d",
80
+ "child/00/00073352dcef30590024d996.png": "276244655bfc242ba113b6423b9a00b4b41ad4d95d08f4c4c0edef53687340be"
81
+ },
82
+ "verification": "all relative file paths and sizes; top-level metadata and sampled PNG SHA-256"
83
+ },
84
+ {
85
+ "path": "bcss",
86
+ "backup_verified": true,
87
+ "content_hashes": {
88
+ "SOURCE_NOTICE.md": "47b2a4fc299f9d80c0c22e488ecb18aecadd77a8b701669090595b45f836115f",
89
+ "exclusions.json": "597e89d79ca75f14919330f5d9e9084210ad9dee6251cfd0a8b8a9630475aafb",
90
+ "manifest.jsonl": "9e8c4391ffc2988092ed4236065ce52df271382a1bb6ae70db2fb63a01f26d98",
91
+ "sample_records.json": "d578774d4a1dc07a37a4d0319df20ac921f55144560ec4ab972b92157e106b49",
92
+ "summary.json": "e0b5dbc0712d82a23dc3aba206de34e319493df8159b5b22dc48896eeb297988",
93
+ "validation.json": "3b6adb57554e7af1a41bf9a37652333f0046fc2d50a1b872e1a431750ea7a5dd",
94
+ "child/00/00005d71072359e55a603b18.png": "7b06fea459a6ef5b181bfbca691231d626558989187fcd7888f96d5a59e3a9fc",
95
+ "child/00/0008d427d6421234460e227b.png": "b3d7027ebd21e40e64b1327d5f96453247b09d934ffdfd9447e30bed4e5d60cd",
96
+ "child/00/0009397c475205e04e75d281.png": "acc28c30d1a18cbe8da403a27df94011b822e89fe4474e46a009860da0538dec",
97
+ "child/00/000edb80d327416db58111f8.png": "89c20155b2dd9a3d1cb56c878c74becb8f9a753985ee73895d1560de33bcbd2c",
98
+ "parent/00/00b9ba2ff65ff1fc5fe78c13.png": "92180c76507ac932f92e7712b01a8b12f2b880dc180eb49006bf0f9840a63854",
99
+ "parent/02/028f2dea5a94fe6a96f4ab8e.png": "f33ad3114520a084038ac96947ca08f94beb1c81550ea47bf99f80900e4c5ee5",
100
+ "parent/03/035a4b550a32470ba93044e2.png": "3a9f0601afe648d8a4f13931a40304469960996c34fca805a58ea3008e17b620",
101
+ "parent/03/03df010c8c94fcf1c36fedc0.png": "0dd97a8695b1c2dace1f57c308a2404c34616c92a998d8d3cb1c79671df4c447"
102
+ },
103
+ "verification": "all relative file paths and sizes; top-level metadata and sampled PNG SHA-256"
104
+ },
105
+ {
106
+ "path": "lizard",
107
+ "backup_verified": true,
108
+ "content_hashes": {
109
+ "SOURCE_NOTICE.md": "10557ca2090e69684049c3811ce9f003f40a5f3f23060a72d1806d2e40f013a2",
110
+ "exclusions.json": "5d11dbb815b1f2e50f598f4a4c6f723ae08d82b9fcb257e3ffee76b1cb3dd728",
111
+ "manifest.jsonl": "b92312d5e532300f1f6aa17ef7cbf8c87adfe6ca57e3a99736ee5b94f13b876c",
112
+ "sample_records.json": "55a1b70ac5ab3418e58a3592558746536d8d1d5a484abbc40be32a14c2769391",
113
+ "summary.json": "c836847f68fe6f34254b98518924d30862cfb1a84786999a6f01358de2115406",
114
+ "validation.json": "be0f8f8b5591ae3279e8fa9a913d05a4ed7d1dd1e4c1065bae35d340c21ee4aa",
115
+ "child/00/0000435296ddf3331d3afc36.png": "3c8a273c63bb7ee193417abd3bfd8a5c27688ea391e291986f36542505060f4d",
116
+ "child/00/0000bf78b1325bd2ec6bbeb4.png": "a6c893315bc750069b8f97f3b362d97020a6af01f025a158aecf0d7506042471",
117
+ "child/00/0000df04de6eabfcd4abd062.png": "d9cee88174a1bcc0ed824ed32936a517546b41b97d6707ea25cbef4830324dcf",
118
+ "child/00/000138b11b1b8529d9922631.png": "3e80ffbb791d96bcbb895955d487751ead2555a9be3f0afa44a5be70dff90d70"
119
+ },
120
+ "verification": "all relative file paths and sizes; top-level metadata and sampled PNG SHA-256"
121
+ },
122
+ {
123
+ "path": "midogpp",
124
+ "backup_verified": true,
125
+ "content_hashes": {
126
+ "SOURCE_NOTICE.md": "7367a26c9e1d702464581900cae01f0a75a8a377d854ce0f19d9feedbcdf0a41",
127
+ "exclusions.json": "26de94623ee8eaac3fff4188107c5b60d55837b847f1cf5850a56ebd66fdf153",
128
+ "manifest.jsonl": "e4d77f41a982effb876757fe91cb4ceb9a4c83fbe3f03e4698f660c1588b8e44",
129
+ "sample_records.json": "e3927b1ecab82a7ea3e787f04b6fbb3937f804e836f0545a8f4ed80a85197862",
130
+ "summary.json": "8879ce09fbb4f334344973f1422a4dc08792be34e1e5e114af9e55600cea0f17",
131
+ "validation.json": "ec391ee1193dc2b1a8934d5ebc5c4522af90c1ac821f35d0420c1bdff8e0b597",
132
+ "child/00/00031a0fe39ca66bfade3e00.png": "90a82c10c09efab7a047c87d5f2681b1b43e240ea5a1443517d6ecb49c44998b",
133
+ "child/00/0017fae94c5fdaa16b55147c.png": "62de8776ab10cf902f32f95cabfb074aed95b41a98c1bf0c183543522c5cd43f",
134
+ "child/00/001f03253be97e2911ee16a9.png": "2fcdd41b1245a89695f4628100621ed40b660ecc82ecd885288015b6ba41f58a",
135
+ "child/00/0026c45eef2f9f43c5a776ef.png": "e0509f2509192881b4a94a412f5d6b077d4d4dc78e173657570c0b36bf039fa8"
136
+ },
137
+ "verification": "all relative file paths and sizes; top-level metadata and sampled PNG SHA-256"
138
+ },
139
+ {
140
+ "path": "sources/refpath_train",
141
+ "backup_verified": true,
142
+ "content_hashes": {
143
+ "README.md": "9ff61105c61254e916ceea30a16930d1d735ca39d09a85b3e0bab5d7cbc84676",
144
+ "README.md.download.json": "0b36c1d6f1bdcad2c18166c629d278871cdb9fb3e79d038fc2df6f337df9dc46",
145
+ "refpath_image.zip.download.json": "bef881e9ebda9471739d96223353eae8edef506f751e42ea2e32624c52176764",
146
+ "source.json": "8f81948b5eb03ec4447c711114b96ddd11cb20a5996ccbde22f966f008aa4ef4",
147
+ "testA.jsonl": "0b60532f01864138f8e842af7f4899ec2d89daa1d53fd5299055cf1a504a4ebd",
148
+ "testA.jsonl.download.json": "6b8829374a67887143c48cc8568ed42d729c1dc3b68dbc9a11d5b0867faf7756",
149
+ "testB.jsonl": "b5cb0103aece56bc711098d281133f8f915615614b517b9431ffce9a86691909",
150
+ "testB.jsonl.download.json": "2e70e1dd186b6a452fb4c73237e5d49ab94423996fa2042bf718b88d50ae98d1",
151
+ "train.jsonl": "4f397514c6eca72451a7d841c19c930aa44bec8b0ec8da0ac06030133805aff6",
152
+ "train.jsonl.download.json": "c0d401a911bd2c535913add6e6ac299afe3362f68171caea7bb983bff08e3101"
153
+ },
154
+ "verification": "all relative file paths and sizes; top-level metadata and sampled PNG SHA-256"
155
+ },
156
+ {
157
+ "path": "sources/pannuke",
158
+ "backup_verified": true,
159
+ "content_hashes": {
160
+ "repaired_fold2.zip.download.json": "3fe9ddd3da9db056de71c9c588e23c71f682b2c3bf198be4ab1abf345e336328",
161
+ "repaired_fold3.zip.download.json": "a275514c3bb7e0404add1dcecbf434ffd9e73d91204269ea214bb883b28f363c",
162
+ "source.json": "5ca0d8eaee9f08f2731ba0501607b86d4746d2bcf6f6bcbfa3eb5913c14cb959"
163
+ },
164
+ "verification": "all relative file paths and sizes; top-level metadata and sampled PNG SHA-256"
165
+ },
166
+ {
167
+ "path": "sources/nuinsseg",
168
+ "backup_verified": true,
169
+ "content_hashes": {
170
+ "nuinsseg.zip.download.json": "aa7a074469f2e1f36f9a485ac03a9955964e3e2192995b5a754d99e8c427f321",
171
+ "source.json": "1a77f10e472f011c7013fc12601c1e47efb03a8edfbe3375fc5c6913500b9d82",
172
+ "data/human bladder/distance maps/human_bladder_01.png": "17334daba0c5d0f5b30139a679c144529f3dbb69f3bf8da1ac1bc3977afc12f3",
173
+ "data/human bladder/distance maps/human_bladder_02.png": "931f0f93871aab35b2bde0587b20e4f76bcf2c8e6cbf4267f99bc5083a1810a0",
174
+ "data/human bladder/distance maps/human_bladder_03.png": "05ea2ae542eb1a97af448726d964970062bc3618453e6be099f7ebc6d57d1f45",
175
+ "data/human bladder/distance maps/human_bladder_04.png": "eae4586bfc960fa4365f039b64f54f4e17a4e454e9cd776b44eedf5c9209709a"
176
+ },
177
+ "verification": "all relative file paths and sizes; top-level metadata and sampled PNG SHA-256"
178
+ },
179
+ {
180
+ "path": "sources/nucls",
181
+ "backup_verified": true,
182
+ "content_hashes": {
183
+ "mirror.zip.download.json": "3736c84a5bd0368d071ea105d4a4ead9e882e682e3e0a4e57db3a00e304c5613",
184
+ "source.json": "5c41502ff44bc46feb11981210be5e3a0040b5ab9f506d0c1e50edbd0789bdbe"
185
+ },
186
+ "verification": "all relative file paths and sizes; top-level metadata and sampled PNG SHA-256"
187
+ },
188
+ {
189
+ "path": "sources/bcss",
190
+ "backup_verified": true,
191
+ "content_hashes": {
192
+ "gtruth_codes.tsv.download.json": "ca6cbea0c5dee3cf90044a2e85da0063eb8da9b55c2f6397ee28f088b89c4156",
193
+ "mirror.zip.download.json": "57cb3bbb8ca2ae3cc162c2cb39787c0ba08a23c4db7bcb7b5db974922228a44d",
194
+ "source.json": "bfd542a454fed89ddf2e43da914af0f0f61e30db73ade62eabcd75e0369a08a9",
195
+ "data/masks/TCGA-A1-A0SK-DX1_xmin45749_ymin25055_MPP-0.2500.png": "ad3b8c998323c6ed10c7abda1d43aa824cc02d3afdebeb465b0f0e042266c6db",
196
+ "data/masks/TCGA-A1-A0SP-DX1_xmin6798_ymin53719_MPP-0.2500.png": "05940f74ea7be9906da54ae951c4364b31d115dbbf22a2576b566975ab4f7fd1",
197
+ "data/masks/TCGA-A2-A04P-DX1_xmin104246_ymin48517_MPP-0.2500.png": "015edca9ead15e7e5f6564a801a0f725116d7da1eb0c2370c139eba7c7ef14de",
198
+ "data/masks/TCGA-A2-A04Q-DX1_xmin20868_ymin17804_MPP-0.2500.png": "d9722f0c73416243ed18c0f8515293d9ba123f2e6133ab2ca480aa5b40532f86"
199
+ },
200
+ "verification": "all relative file paths and sizes; top-level metadata and sampled PNG SHA-256"
201
+ },
202
+ {
203
+ "path": "sources/lizard",
204
+ "backup_verified": true,
205
+ "content_hashes": {
206
+ "lizard.zip.download.json": "d85594c1800a0e7e6785b54a3548312ece4a8baa9ff7314076fe36c37df6fa73",
207
+ "source.json": "938c75b75081de8743ba611cc30fd9c7c2c01360b522ab40898140eedb9d83f9",
208
+ "data/lizard_images1/Lizard_Images1/consep_1.png": "b4857224beed54514bd33d0fe4edb9d43c1a1d14a8f7c2cd401c7f07d8791554",
209
+ "data/lizard_images1/Lizard_Images1/consep_10.png": "e767ee8144ae9a6fbf0cc58a35c8a99109aa4b4583acbb73186d65742357e7fd",
210
+ "data/lizard_images1/Lizard_Images1/consep_11.png": "d34c8d36933d7e9d95bbd705278dcf7e6f5a2694065b6f8a0e6aa1116ce00862",
211
+ "data/lizard_images1/Lizard_Images1/consep_12.png": "01abb2bfac3c543643502254eb403acf88590926fcde18035dfb9f93cc5e8241"
212
+ },
213
+ "verification": "all relative file paths and sizes; top-level metadata and sampled PNG SHA-256"
214
+ },
215
+ {
216
+ "path": "sources/midogpp",
217
+ "backup_verified": true,
218
+ "content_hashes": {
219
+ "annotations.json": "8c87ab4276eb11f6b6b5ac0d956b89dad7568a5474e0904b653d54dc68091f47",
220
+ "annotations.json.download.json": "0112c795e0c15c244f05ea4668b6c2fe8dc8c6c1d68ff2ccbf2b3a207265770b",
221
+ "source.json": "d2db14fcaa20d10071984de750721509007df84d94d28eaa56cd645a4de1387b",
222
+ "splits.csv.download.json": "ff0d1945883182f18f8a619731f6f8502fb486194332accf83580da6dfbd2a69"
223
+ },
224
+ "verification": "all relative file paths and sizes; top-level metadata and sampled PNG SHA-256"
225
+ },
226
+ {
227
+ "path": "pathbind_grounding",
228
+ "backup_verified": true,
229
+ "content_hashes": {
230
+ "EXCLUDED_FROM_TRAINING.md": "46ad0839b9317508fb1c8a151cdcd5b008b6076fbe4971c8d45e9d2280f16c4e",
231
+ "SOURCE_NOTICE.md": "5aed2e74d881d7b9fe4bea71dcb0c9cdd33e52bc9b85ad5b96fe78a9b6f10667",
232
+ "manifest.jsonl": "6d5089b7e7b5b9280dff0850914f497a5975945606ca5c327e757de988072811",
233
+ "summary.json": "57bc670cfb32f9bd724744167d51d5e8df868f5f62b3446fea4924ef90adf877"
234
+ },
235
+ "verification": "all relative file paths and sizes; top-level metadata and sampled PNG SHA-256"
236
+ },
237
+ {
238
+ "path": "pathbind_source",
239
+ "backup_verified": true,
240
+ "content_hashes": {
241
+ "README.md": "9b370accf95e7c67746b14936890b3e755c444a92d2ce783cc171bde5dc49392"
242
+ },
243
+ "verification": "all relative file paths and sizes; top-level metadata and sampled PNG SHA-256"
244
+ },
245
+ {
246
+ "path": "pathgen16m",
247
+ "backup_verified": true,
248
+ "content_hashes": {
249
+ "SOURCE_NOTICE.md": "9259fdd755b5096c025fdfff583f655c3b39c25818cf80b3656a72c4e4fa4eeb",
250
+ "manifest.jsonl": "f57b5d894f8d5d0aa4458de17b5a6ff2349f09d1fc88e171ddddc91b03a40e04",
251
+ "summary.json": "dc6295d7d4035afae6320746968d9cc4927a6dde7f0f3d2d8789ba2a80bd0835"
252
+ },
253
+ "verification": "all relative file paths and sizes; top-level metadata and sampled PNG SHA-256"
254
+ },
255
+ {
256
+ "path": "refpath_source",
257
+ "backup_verified": true,
258
+ "content_hashes": {
259
+ "README.md": "9ff61105c61254e916ceea30a16930d1d735ca39d09a85b3e0bab5d7cbc84676",
260
+ "testA.jsonl": "0b60532f01864138f8e842af7f4899ec2d89daa1d53fd5299055cf1a504a4ebd",
261
+ "testB.jsonl": "b5cb0103aece56bc711098d281133f8f915615614b517b9431ffce9a86691909"
262
+ },
263
+ "verification": "all relative file paths and sizes; top-level metadata and sampled PNG SHA-256"
264
+ },
265
+ {
266
+ "path": "segpath",
267
+ "backup_verified": false,
268
+ "reason": "missing_or_linked_directory"
269
+ },
270
+ {
271
+ "path": "sources/segpath",
272
+ "backup_verified": false,
273
+ "reason": "backup_inventory_differs",
274
+ "difference_count": 317407,
275
+ "difference_examples": [
276
+ ">f+++++++++ CD235a_RBC.tar.gz",
277
+ ">f+++++++++ CD235a_RBC.tar.gz.download.json",
278
+ ">f+++++++++ CD3CD20_Lymphocyte.tar.gz",
279
+ ">f+++++++++ CD3CD20_Lymphocyte.tar.gz.download.json",
280
+ ">f+++++++++ CD45RB_Leukocyte.tar.gz",
281
+ ">f+++++++++ CD45RB_Leukocyte.tar.gz.download.json",
282
+ ">f+++++++++ ERG_Endothelium.tar.gz",
283
+ ">f+++++++++ ERG_Endothelium.tar.gz.download.json",
284
+ ">f+++++++++ MIST1_PlasmaCell.tar.gz",
285
+ ">f+++++++++ MIST1_PlasmaCell.tar.gz.download.json"
286
+ ]
287
+ }
288
+ ],
289
+ "delete_directories": [
290
+ "refpath_train",
291
+ "pannuke",
292
+ "nuinsseg",
293
+ "nucls",
294
+ "bcss",
295
+ "lizard",
296
+ "midogpp",
297
+ "sources/refpath_train",
298
+ "sources/pannuke",
299
+ "sources/nuinsseg",
300
+ "sources/nucls",
301
+ "sources/bcss",
302
+ "sources/lizard",
303
+ "sources/midogpp",
304
+ "pathbind_grounding",
305
+ "pathbind_source",
306
+ "pathgen16m",
307
+ "refpath_source"
308
+ ],
309
+ "preserve_directories": [
310
+ "segpath",
311
+ "sources/segpath"
312
+ ],
313
+ "disk_free_before": 279731953664,
314
+ "unfiltered_metadata_archive": "/storage/ssd1/jiahao/ZoomPath/audit/auxiliary_quality_filter_20261010/unfiltered_export_metadata",
315
+ "manual_review_performed": false,
316
+ "huggingface_updated": false,
317
+ "status": "complete",
318
+ "operations": [
319
+ {
320
+ "action": "promote_filtered_and_archive_source_metadata"
321
+ },
322
+ {
323
+ "action": "delete_backup_verified_directory",
324
+ "path": "refpath_train"
325
+ },
326
+ {
327
+ "action": "delete_backup_verified_directory",
328
+ "path": "pannuke"
329
+ },
330
+ {
331
+ "action": "delete_backup_verified_directory",
332
+ "path": "nuinsseg"
333
+ },
334
+ {
335
+ "action": "delete_backup_verified_directory",
336
+ "path": "nucls"
337
+ },
338
+ {
339
+ "action": "delete_backup_verified_directory",
340
+ "path": "bcss"
341
+ },
342
+ {
343
+ "action": "delete_backup_verified_directory",
344
+ "path": "lizard"
345
+ },
346
+ {
347
+ "action": "delete_backup_verified_directory",
348
+ "path": "midogpp"
349
+ },
350
+ {
351
+ "action": "delete_backup_verified_directory",
352
+ "path": "sources/refpath_train"
353
+ },
354
+ {
355
+ "action": "delete_backup_verified_directory",
356
+ "path": "sources/pannuke"
357
+ },
358
+ {
359
+ "action": "delete_backup_verified_directory",
360
+ "path": "sources/nuinsseg"
361
+ },
362
+ {
363
+ "action": "delete_backup_verified_directory",
364
+ "path": "sources/nucls"
365
+ },
366
+ {
367
+ "action": "delete_backup_verified_directory",
368
+ "path": "sources/bcss"
369
+ },
370
+ {
371
+ "action": "delete_backup_verified_directory",
372
+ "path": "sources/lizard"
373
+ },
374
+ {
375
+ "action": "delete_backup_verified_directory",
376
+ "path": "sources/midogpp"
377
+ },
378
+ {
379
+ "action": "delete_backup_verified_directory",
380
+ "path": "pathbind_grounding"
381
+ },
382
+ {
383
+ "action": "delete_backup_verified_directory",
384
+ "path": "pathbind_source"
385
+ },
386
+ {
387
+ "action": "delete_backup_verified_directory",
388
+ "path": "pathgen16m"
389
+ },
390
+ {
391
+ "action": "delete_backup_verified_directory",
392
+ "path": "refpath_source"
393
+ }
394
+ ],
395
+ "completed_at": "2026-10-10T04:06:57+08:00",
396
+ "disk_free_after": 391760920576,
397
+ "filesystem_free_bytes_increase": 112028966912
398
+ }
package/training_data.py CHANGED
@@ -41,6 +41,7 @@ class AuxiliaryTrainingReader:
41
  self._annotation_path: str | None = None
42
  self._targets: list[dict[str, Any]] = []
43
  self._groups: dict[tuple[str, str], list[dict[str, Any]]] = {}
 
44
 
45
  def resolve(self, relative: str) -> Path:
46
  path = Path(relative)
@@ -62,10 +63,12 @@ class AuxiliaryTrainingReader:
62
  payload = json.loads(self.resolve(path).read_text(encoding="utf-8"))
63
  self._targets = payload["targets"]
64
  self._groups = {}
 
65
  for target in self._targets:
 
66
  for key in ("label", "expression"):
67
  if key in target:
68
- self._groups.setdefault((key, target[key]), []).append(target)
69
  self._annotation_path = path
70
  return self._targets
71
 
@@ -80,6 +83,12 @@ class AuxiliaryTrainingReader:
80
  raise ValueError(f"Target count mismatch: {row['record_id']}")
81
  return matches
82
 
 
 
 
 
 
 
83
  def load_pair(self, row: dict[str, Any]) -> dict[str, Any]:
84
  from PIL import Image
85
 
@@ -92,6 +101,8 @@ class AuxiliaryTrainingReader:
92
  "parent_image": parent, "child_image": child, "question": row["question"],
93
  "child_bbox_xyxy_in_parent": row["child_bbox_xyxy_in_parent"],
94
  "valid_target_bboxes_xyxy_in_parent": [target["bbox_xyxy"] for target in self.valid_targets(row)],
 
 
95
  "organ": row["organ"], "mpp": row["parent_image"]["mpp"],
96
  "magnification": row["parent_image"].get("magnification"),
97
  "mpp_is_approximate": row["parent_image"].get("mpp_is_approximate", False),
 
41
  self._annotation_path: str | None = None
42
  self._targets: list[dict[str, Any]] = []
43
  self._groups: dict[tuple[str, str], list[dict[str, Any]]] = {}
44
+ self._ignored_groups: dict[tuple[str, str], list[dict[str, Any]]] = {}
45
 
46
  def resolve(self, relative: str) -> Path:
47
  path = Path(relative)
 
63
  payload = json.loads(self.resolve(path).read_text(encoding="utf-8"))
64
  self._targets = payload["targets"]
65
  self._groups = {}
66
+ self._ignored_groups = {}
67
  for target in self._targets:
68
+ groups = self._groups if target.get("training_eligible", True) else self._ignored_groups
69
  for key in ("label", "expression"):
70
  if key in target:
71
+ groups.setdefault((key, target[key]), []).append(target)
72
  self._annotation_path = path
73
  return self._targets
74
 
 
83
  raise ValueError(f"Target count mismatch: {row['record_id']}")
84
  return matches
85
 
86
+ def ignored_targets(self, row: dict[str, Any]) -> list[dict[str, Any]]:
87
+ """Source-supported query matches excluded from positive training supervision."""
88
+ self.annotation_targets(row)
89
+ key, value = next(iter(row["valid_targets_filter"].items()))
90
+ return self._ignored_groups.get((key, value), [])
91
+
92
  def load_pair(self, row: dict[str, Any]) -> dict[str, Any]:
93
  from PIL import Image
94
 
 
101
  "parent_image": parent, "child_image": child, "question": row["question"],
102
  "child_bbox_xyxy_in_parent": row["child_bbox_xyxy_in_parent"],
103
  "valid_target_bboxes_xyxy_in_parent": [target["bbox_xyxy"] for target in self.valid_targets(row)],
104
+ "ignored_target_bboxes_xyxy_in_parent": [target["bbox_xyxy"] for target in self.ignored_targets(row)],
105
+ "ignored_targets_are_not_negatives": bool(row.get("quality_filter")),
106
  "organ": row["organ"], "mpp": row["parent_image"]["mpp"],
107
  "magnification": row["parent_image"].get("magnification"),
108
  "mpp_is_approximate": row["parent_image"].get("mpp_is_approximate", False),
package/validation.json CHANGED
@@ -2,81 +2,81 @@
2
  "schema_version": "zoompath.auxiliary_training.export.validation.v1",
3
  "status": "pass",
4
  "manifest": "manifest.jsonl",
5
- "manifest_sha256": "878b7e84d153a63006539477a26519d775a10358290c33406c69c1b80354c25c",
6
- "row_count": 618432,
7
  "dataset_counts": {
8
- "bcss": 6153,
9
- "lizard": 325966,
10
  "midogpp": 8008,
11
- "nucls": 35848,
12
- "nuinsseg": 25718,
13
- "pannuke": 187831,
14
- "refpath_train": 28908
15
  },
16
- "annotation_file_count": 34193,
17
- "unique_parent_count": 34193,
18
- "multi_valid_target_rows": 594683,
19
  "organ_counts": {
20
- "Adipose tissue": 466,
21
- "Adrenal gland": 6873,
22
- "Bile duct": 8960,
23
- "Bladder": 3155,
24
- "Brain": 111,
25
- "Breast": 92592,
26
- "Cerebellum": 421,
27
- "Cervix": 7226,
28
- "Colon": 35333,
29
- "Colon and rectum": 325966,
30
- "Epiglottis": 131,
31
- "Esophagus": 10961,
32
- "Femur": 360,
33
- "Head and neck": 7715,
34
- "Heart": 682,
35
- "Jejunum": 671,
36
- "Kidney": 6565,
37
- "Liver": 6378,
38
- "Lung": 7864,
39
- "Muscle": 214,
40
- "Ovary": 3825,
41
- "Pancreas": 6241,
42
- "Peritoneum": 386,
43
- "Placenta": 1632,
44
- "Prostate": 4131,
45
- "Rectum": 329,
46
- "Salivary gland": 2672,
47
- "Skin": 8832,
48
- "Spleen": 4637,
49
- "Stomach": 6301,
50
- "Testis": 5022,
51
- "Thymus": 1124,
52
- "Thyroid": 4859,
53
- "Tongue": 1243,
54
- "Tonsil": 930,
55
- "Umbilical cord": 77,
56
- "Uterus": 8686,
57
- "unknown": 34861
58
  },
59
  "mpp_counts": {
60
- "present": 43069,
61
- "missing": 575363
62
  },
63
  "level_counts": {
64
- "present": 43069,
65
- "missing": 575363
66
  },
67
  "magnification_counts": {
68
- "20.0": 22234,
69
- "40.0": 20835,
70
- "missing": 575363
71
  },
72
  "mpp_approximation_counts": {
73
- "approximate": 28908,
74
- "missing": 575363,
75
- "source_metadata": 14161
76
  },
77
  "scale_level_counts": {
78
- "high": 43069,
79
- "missing": 575363
80
  },
81
  "validation_scope": "all rows: paths, unique IDs, bounds, query coverage, source target linkage and metadata; pixels per pixel_check_mode",
82
  "pixel_check_mode": "deterministic_sample",
 
2
  "schema_version": "zoompath.auxiliary_training.export.validation.v1",
3
  "status": "pass",
4
  "manifest": "manifest.jsonl",
5
+ "manifest_sha256": "eeda70abfec170771f9084d2330011dcfa8443c2132ea8a2e8a576296e78fa85",
6
+ "row_count": 235346,
7
  "dataset_counts": {
8
+ "bcss": 2836,
9
+ "lizard": 31446,
10
  "midogpp": 8008,
11
+ "nucls": 32538,
12
+ "nuinsseg": 20521,
13
+ "pannuke": 111605,
14
+ "refpath_train": 28392
15
  },
16
+ "annotation_file_count": 38836,
17
+ "unique_parent_count": 38836,
18
+ "multi_valid_target_rows": 209945,
19
  "organ_counts": {
20
+ "Adipose tissue": 399,
21
+ "Adrenal gland": 4506,
22
+ "Bile duct": 5516,
23
+ "Bladder": 1929,
24
+ "Brain": 78,
25
+ "Breast": 68310,
26
+ "Cerebellum": 338,
27
+ "Cervix": 4643,
28
+ "Colon": 18689,
29
+ "Colon and rectum": 31446,
30
+ "Epiglottis": 97,
31
+ "Esophagus": 6817,
32
+ "Femur": 272,
33
+ "Head and neck": 4547,
34
+ "Heart": 516,
35
+ "Jejunum": 513,
36
+ "Kidney": 3775,
37
+ "Liver": 3881,
38
+ "Lung": 3664,
39
+ "Muscle": 175,
40
+ "Ovary": 2461,
41
+ "Pancreas": 4317,
42
+ "Peritoneum": 291,
43
+ "Placenta": 1291,
44
+ "Prostate": 2639,
45
+ "Rectum": 251,
46
+ "Salivary gland": 2192,
47
+ "Skin": 6227,
48
+ "Spleen": 3828,
49
+ "Stomach": 3932,
50
+ "Testis": 3280,
51
+ "Thymus": 947,
52
+ "Thyroid": 3189,
53
+ "Tongue": 927,
54
+ "Tonsil": 710,
55
+ "Umbilical cord": 41,
56
+ "Uterus": 4497,
57
+ "unknown": 34215
58
  },
59
  "mpp_counts": {
60
+ "present": 39236,
61
+ "missing": 196110
62
  },
63
  "level_counts": {
64
+ "present": 39236,
65
+ "missing": 196110
66
  },
67
  "magnification_counts": {
68
+ "20.0": 18640,
69
+ "40.0": 20596,
70
+ "missing": 196110
71
  },
72
  "mpp_approximation_counts": {
73
+ "approximate": 28392,
74
+ "missing": 196110,
75
+ "source_metadata": 10844
76
  },
77
  "scale_level_counts": {
78
+ "high": 39236,
79
+ "missing": 196110
80
  },
81
  "validation_scope": "all rows: paths, unique IDs, bounds, query coverage, source target linkage and metadata; pixels per pixel_check_mode",
82
  "pixel_check_mode": "deterministic_sample",
release_manifest.json CHANGED
@@ -2,279 +2,189 @@
2
  "schema_version": "zoompath.auxiliary_training.archive.v1",
3
  "repo_id": "xuxuxuxuxu/PathGrounding",
4
  "status": "frozen_release",
5
- "created_at": "2026-10-10T00:53:07+08:00",
6
- "source_manifest_sha256": "878b7e84d153a63006539477a26519d775a10358290c33406c69c1b80354c25c",
7
- "package_file_count": 686842,
8
- "package_bytes": 54066861824,
9
- "pair_count": 618432,
10
- "unique_parent_count": 34193,
11
  "dataset_counts": {
12
- "bcss": 6153,
13
- "lizard": 325966,
14
  "midogpp": 8008,
15
- "nucls": 35848,
16
- "nuinsseg": 25718,
17
- "pannuke": 187831,
18
- "refpath_train": 28908
19
  },
20
  "bulk_counts": {
21
- "images/parent": 34193,
22
- "images/child": 618432,
23
- "annotations": 34193
24
  },
25
- "total_upload_bytes": 55292110389,
26
  "files": [
27
  {
28
  "path": "archives/images-parent-00000.tar",
29
  "kind": "archive",
30
- "bytes": 2113556480,
31
- "sha256": "e27b645bbf3f983395ead2d0524c45fb17f57fbcb36109502c5e0eec66c77644",
32
- "member_count": 1847,
33
- "unpacked_bytes": 2110243595
34
  },
35
  {
36
  "path": "archives/images-parent-00001.tar",
37
  "kind": "archive",
38
- "bytes": 2018375680,
39
- "sha256": "59cf7588f1d0371b544ccec94f9fe3372696acdabf6aa3a5e2c3713693816256",
40
- "member_count": 1264,
41
- "unpacked_bytes": 2016104508
42
  },
43
  {
44
  "path": "archives/images-parent-00002.tar",
45
  "kind": "archive",
46
- "bytes": 2032537600,
47
- "sha256": "618d0e26ca2280d54d1df8b3a267eeedc8f21aed726440a5ee7a0ada17b52577",
48
- "member_count": 1354,
49
- "unpacked_bytes": 2030110023
50
  },
51
  {
52
  "path": "archives/images-parent-00003.tar",
53
  "kind": "archive",
54
- "bytes": 2091427840,
55
- "sha256": "1a06d275a286de04736d7e6ae4d40737aaef71285e93170181b2dea872c6cd59",
56
- "member_count": 1476,
57
- "unpacked_bytes": 2088773562
58
  },
59
  {
60
  "path": "archives/images-parent-00004.tar",
61
  "kind": "archive",
62
- "bytes": 2111078400,
63
- "sha256": "5eb09e69a6411709052b99cf688e9a9a6b7e5dfb675e4d14266280f72a310790",
64
- "member_count": 1784,
65
- "unpacked_bytes": 2107874948
66
  },
67
  {
68
  "path": "archives/images-parent-00005.tar",
69
  "kind": "archive",
70
- "bytes": 2042163200,
71
- "sha256": "ad5eb1e0c6471eba51fad7942059b1145f164a06112a1228eb92bce667766d72",
72
- "member_count": 921,
73
- "unpacked_bytes": 2040508037
74
  },
75
  {
76
  "path": "archives/images-parent-00006.tar",
77
  "kind": "archive",
78
- "bytes": 2119219200,
79
- "sha256": "b40360fd6d41150a3659d21dd36eeb5205e2a5301515d26caf91d16e5c177450",
80
- "member_count": 1963,
81
- "unpacked_bytes": 2115701191
82
  },
83
  {
84
  "path": "archives/images-parent-00007.tar",
85
  "kind": "archive",
86
- "bytes": 2056970240,
87
- "sha256": "507ae1b921bcf646540e682e58e119100fc4ac253a0fc6e16fbd7d57c86e91c0",
88
- "member_count": 1295,
89
- "unpacked_bytes": 2054637481
90
  },
91
  {
92
  "path": "archives/images-parent-00008.tar",
93
  "kind": "archive",
94
- "bytes": 2096025600,
95
- "sha256": "a20d863c331b202e7aef27138f69f6ec098bcbe882c1da2cff1908bdcbb6c141",
96
- "member_count": 1697,
97
- "unpacked_bytes": 2092972411
98
  },
99
  {
100
  "path": "archives/images-parent-00009.tar",
101
  "kind": "archive",
102
- "bytes": 2094417920,
103
- "sha256": "9ae2434ee15be02fabc613843d40dfa0f79e496d29d7f2c9eb29f474748d7971",
104
- "member_count": 1614,
105
- "unpacked_bytes": 2091526605
106
  },
107
  {
108
  "path": "archives/images-parent-00010.tar",
109
  "kind": "archive",
110
- "bytes": 2023229440,
111
- "sha256": "d7d8228552fff70308a7b7e6a92d14bd0b850865ba575de9cd3f29ee6f4b1b65",
112
- "member_count": 808,
113
- "unpacked_bytes": 2021771324
114
- },
115
- {
116
- "path": "archives/images-parent-00011.tar",
117
- "kind": "archive",
118
- "bytes": 2115348480,
119
- "sha256": "bdc710cdd00311a66eeb2ebd44a546b789ee1da412e477ef382099995bbeaa84",
120
- "member_count": 1559,
121
- "unpacked_bytes": 2112545743
122
- },
123
- {
124
- "path": "archives/images-parent-00012.tar",
125
- "kind": "archive",
126
- "bytes": 2146252800,
127
- "sha256": "834c48b1d99b5ab43c1f51019dbccbf849709918536fce71e6305ce070ead58f",
128
- "member_count": 2124,
129
- "unpacked_bytes": 2142460090
130
- },
131
- {
132
- "path": "archives/images-parent-00013.tar",
133
- "kind": "archive",
134
- "bytes": 2066042880,
135
- "sha256": "6c28227d57e54cdb8a0f0192a4e0e3890bc4fcbeb07763f7b695d9232e53446a",
136
- "member_count": 1282,
137
- "unpacked_bytes": 2063742488
138
- },
139
- {
140
- "path": "archives/images-parent-00014.tar",
141
- "kind": "archive",
142
- "bytes": 2090045440,
143
- "sha256": "a30c17e3756d5440917d400f0dcd3af502c8e1ee26478b6d38d55b44edc1f7b7",
144
- "member_count": 1330,
145
- "unpacked_bytes": 2087659279
146
- },
147
- {
148
- "path": "archives/images-parent-00015.tar",
149
- "kind": "archive",
150
- "bytes": 2090065920,
151
- "sha256": "f595b56139b4545457ef26e58abecc00c4d263d7f5e4b0971bfd19b3c8b71f81",
152
- "member_count": 1061,
153
- "unpacked_bytes": 2088154373
154
- },
155
- {
156
- "path": "archives/images-parent-00016.tar",
157
- "kind": "archive",
158
- "bytes": 2146385920,
159
- "sha256": "fa5f7dfb510659c2178e6d1a51907892404d2c945dcc1682102506becbbd0474",
160
- "member_count": 1921,
161
- "unpacked_bytes": 2142938725
162
- },
163
- {
164
- "path": "archives/images-parent-00017.tar",
165
- "kind": "archive",
166
- "bytes": 2146396160,
167
- "sha256": "e86c41776fecd2427980e70f2159bcec0c5ace4767a0e510a53909feec927a60",
168
- "member_count": 1916,
169
- "unpacked_bytes": 2142957190
170
- },
171
- {
172
- "path": "archives/images-parent-00018.tar",
173
- "kind": "archive",
174
- "bytes": 2128414720,
175
- "sha256": "3a3306ab368bd2d88c1dfd4e9c3674fc0324a2400c09fded73c867162e7b2a7e",
176
- "member_count": 1945,
177
- "unpacked_bytes": 2124918960
178
- },
179
- {
180
- "path": "archives/images-parent-00019.tar",
181
- "kind": "archive",
182
- "bytes": 2058874880,
183
- "sha256": "8660f96662f192163edb8eb9789151c290d9123f4b4f5518ab2c18b2fd2d20c3",
184
- "member_count": 1858,
185
- "unpacked_bytes": 2055544008
186
- },
187
- {
188
- "path": "archives/images-parent-00020.tar",
189
- "kind": "archive",
190
- "bytes": 2031196160,
191
- "sha256": "e41a1b0e6e79b236824ef1a94da3f93413f9367064d14c96fc21bd43075af887",
192
- "member_count": 1021,
193
- "unpacked_bytes": 2029366119
194
- },
195
- {
196
- "path": "archives/images-parent-00021.tar",
197
- "kind": "archive",
198
- "bytes": 2131046400,
199
- "sha256": "ee7bbbc3cfcf5036049b5a2335ffc678c4761f69d5c22b03e49f51eb555118ec",
200
- "member_count": 1588,
201
- "unpacked_bytes": 2128193497
202
- },
203
- {
204
- "path": "archives/images-parent-00022.tar",
205
- "kind": "archive",
206
- "bytes": 1131356160,
207
- "sha256": "030beeb60a727307e230a1b35ef004f81bb1d2ad95e1d9d471a69d86d225b016",
208
- "member_count": 565,
209
- "unpacked_bytes": 1130340295
210
  },
211
  {
212
  "path": "archives/images-child-00000.tar",
213
  "kind": "archive",
214
- "bytes": 2048440320,
215
- "sha256": "57afef7147cf0ed1a9dcebe39734296fa63c0113543464c5a50193edadb33d18",
216
- "member_count": 193404,
217
- "unpacked_bytes": 1704256132
218
  },
219
  {
220
  "path": "archives/images-child-00001.tar",
221
  "kind": "archive",
222
- "bytes": 2047016960,
223
- "sha256": "845a3f3617372103eca01e72103cda2b116112686643ad0c528d49b250f9bc93",
224
- "member_count": 196233,
225
- "unpacked_bytes": 1697987958
226
  },
227
  {
228
  "path": "archives/images-child-00002.tar",
229
  "kind": "archive",
230
- "bytes": 2047539200,
231
- "sha256": "dcbdaf71a64cd61962b4ac49dac48db9b2288926267385c6f64af75627bd1040",
232
- "member_count": 195215,
233
- "unpacked_bytes": 1700289806
234
  },
235
  {
236
- "path": "archives/images-child-00003.tar",
237
  "kind": "archive",
238
- "bytes": 336363520,
239
- "sha256": "843b86c9a7b236e7a716316738e4ae5f816f47df12f0a4b646e375ee1858c999",
240
- "member_count": 33580,
241
- "unpacked_bytes": 276655015
242
  },
243
  {
244
- "path": "archives/annotations-00000.tar",
245
- "kind": "archive",
246
- "bytes": 285358080,
247
- "sha256": "88cd521c4fb64ca027fea2f348bba39a314a55dad91b9a028e52361cdf243bd3",
248
- "member_count": 34193,
249
- "unpacked_bytes": 221673167
250
  },
251
  {
252
- "path": "package/README.json",
253
- "package_path": "README.json",
254
  "kind": "package_file",
255
- "bytes": 1049,
256
- "sha256": "16952d725b8b84b77efcc008f4b58507def498084a39e045a9b862ed41ce4a26"
257
  },
258
  {
259
  "path": "package/README.md",
260
  "package_path": "README.md",
261
  "kind": "package_file",
262
- "bytes": 10389,
263
- "sha256": "5b6eec3706ec1e0d605504b80824ff2dbd227c77325a21c3bde9d07cd89bbe94"
 
 
 
 
 
 
 
264
  },
265
  {
266
  "path": "package/index.json",
267
  "package_path": "index.json",
268
  "kind": "package_file",
269
- "bytes": 3762,
270
- "sha256": "a9266b8ef5fcb027a7a7d32638b2f2b70dc9290a26046df68859e07f067ddc78"
271
  },
272
  {
273
  "path": "package/manifest.jsonl",
274
  "package_path": "manifest.jsonl",
275
  "kind": "package_file",
276
- "bytes": 1446858187,
277
- "sha256": "878b7e84d153a63006539477a26519d775a10358290c33406c69c1b80354c25c"
278
  },
279
  {
280
  "path": "package/metadata/bcss/source.json",
@@ -402,25 +312,179 @@
402
  "bytes": 6447,
403
  "sha256": "6ba5bc0a9a55683e988fc5f3d33207c76da6d5c47c82d505ad391a5f78efcc72"
404
  },
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
405
  {
406
  "path": "package/training_data.py",
407
  "package_path": "training_data.py",
408
  "kind": "package_file",
409
- "bytes": 4255,
410
- "sha256": "dafa4ae5a06f0d52a57ec8f40187ac32501192ec114b3cbae546382a62a7d2d7"
411
  },
412
  {
413
  "path": "package/validation.json",
414
  "package_path": "validation.json",
415
  "kind": "package_file",
416
- "bytes": 2070,
417
- "sha256": "0ca12f96d2406f21b318c2b7694ee9f40f24f34dabc78ffa263ee8b8c93f8049"
418
  },
419
  {
420
  "path": "README.md",
421
  "kind": "tool",
422
- "bytes": 4636,
423
- "sha256": "1658c4209d97fb879d44ec888fa75e3bece9855141a581ba66d219f79950c8d6"
424
  },
425
  {
426
  "path": "tools/restore_package.py",
 
2
  "schema_version": "zoompath.auxiliary_training.archive.v1",
3
  "repo_id": "xuxuxuxuxu/PathGrounding",
4
  "status": "frozen_release",
5
+ "created_at": "2026-10-10T21:17:56+08:00",
6
+ "source_manifest_sha256": "eeda70abfec170771f9084d2330011dcfa8443c2132ea8a2e8a576296e78fa85",
7
+ "package_file_count": 313066,
8
+ "package_bytes": 28796664128,
9
+ "pair_count": 235346,
10
+ "unique_parent_count": 38836,
11
  "dataset_counts": {
12
+ "bcss": 2836,
13
+ "lizard": 31446,
14
  "midogpp": 8008,
15
+ "nucls": 32538,
16
+ "nuinsseg": 20521,
17
+ "pannuke": 111605,
18
+ "refpath_train": 28392
19
  },
20
  "bulk_counts": {
21
+ "images/parent": 38836,
22
+ "images/child": 235346,
23
+ "annotations": 38836
24
  },
25
+ "total_upload_bytes": 29356860930,
26
  "files": [
27
  {
28
  "path": "archives/images-parent-00000.tar",
29
  "kind": "archive",
30
+ "bytes": 2145054720,
31
+ "sha256": "10cedc9b9bd6087e38f37061b9f8704f4dccc95a9d25ca6b812c74c15352f310",
32
+ "member_count": 3628,
33
+ "unpacked_bytes": 2138541067
34
  },
35
  {
36
  "path": "archives/images-parent-00001.tar",
37
  "kind": "archive",
38
+ "bytes": 2143447040,
39
+ "sha256": "be1911b72aa191ebbb2ea7afd4db20d00ffe01e314c07142d210fee3caba9bf0",
40
+ "member_count": 3744,
41
+ "unpacked_bytes": 2136728756
42
  },
43
  {
44
  "path": "archives/images-parent-00002.tar",
45
  "kind": "archive",
46
+ "bytes": 2143764480,
47
+ "sha256": "04460e45d72e7bbd914d0d2c30d80fe8fce4bcc9582fa434d3f87cfacfa6b2a7",
48
+ "member_count": 3741,
49
+ "unpacked_bytes": 2137058332
50
  },
51
  {
52
  "path": "archives/images-parent-00003.tar",
53
  "kind": "archive",
54
+ "bytes": 2145372160,
55
+ "sha256": "26b6df70d3ed02098f190ad0d6fc3afc0c6aa2c5096822fa2da150359d999262",
56
+ "member_count": 3563,
57
+ "unpacked_bytes": 2138978755
58
  },
59
  {
60
  "path": "archives/images-parent-00004.tar",
61
  "kind": "archive",
62
+ "bytes": 2145392640,
63
+ "sha256": "005b1b760006150e262061b732fdc7e3b9ec7e747a3fa9c308483425e129388d",
64
+ "member_count": 3525,
65
+ "unpacked_bytes": 2139078178
66
  },
67
  {
68
  "path": "archives/images-parent-00005.tar",
69
  "kind": "archive",
70
+ "bytes": 2144901120,
71
+ "sha256": "c797e619b833c0131d819dc3c96be1e11387eb68c665e4538d16d20dfe9b048d",
72
+ "member_count": 3592,
73
+ "unpacked_bytes": 2138465370
74
  },
75
  {
76
  "path": "archives/images-parent-00006.tar",
77
  "kind": "archive",
78
+ "bytes": 2144000000,
79
+ "sha256": "718b978dfce729e170862eb4753e04816a8133ff30c06439d9a3573bfb6963bb",
80
+ "member_count": 3754,
81
+ "unpacked_bytes": 2137269212
82
  },
83
  {
84
  "path": "archives/images-parent-00007.tar",
85
  "kind": "archive",
86
+ "bytes": 2144081920,
87
+ "sha256": "0ebe805ace63f99933b11a0c69b925aa26af8a1a4efeb0f3cbf700529bff4716",
88
+ "member_count": 3664,
89
+ "unpacked_bytes": 2137503201
90
  },
91
  {
92
  "path": "archives/images-parent-00008.tar",
93
  "kind": "archive",
94
+ "bytes": 2145566720,
95
+ "sha256": "003c18b4e612b01aa10a6cdf827b56a8cd181ea2ad89dbc5a4834af916ea0843",
96
+ "member_count": 3706,
97
+ "unpacked_bytes": 2138910933
98
  },
99
  {
100
  "path": "archives/images-parent-00009.tar",
101
  "kind": "archive",
102
+ "bytes": 2145157120,
103
+ "sha256": "b5652803d8ca5dc12942ce3ea9954856d186d1a498583818cff7a6bd0f07e04c",
104
+ "member_count": 3649,
105
+ "unpacked_bytes": 2138611663
106
  },
107
  {
108
  "path": "archives/images-parent-00010.tar",
109
  "kind": "archive",
110
+ "bytes": 1374894080,
111
+ "sha256": "6bc42614bdf7606fb0fa91ae33d99616ca57f679ecb293b2ed049921f711e2d2",
112
+ "member_count": 2270,
113
+ "unpacked_bytes": 1370822696
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
114
  },
115
  {
116
  "path": "archives/images-child-00000.tar",
117
  "kind": "archive",
118
+ "bytes": 2096660480,
119
+ "sha256": "d95be1bbe37cb1b50302fab0ad70c378b15713217ed44e171d33506782c11295",
120
+ "member_count": 98870,
121
+ "unpacked_bytes": 1919398803
122
  },
123
  {
124
  "path": "archives/images-child-00001.tar",
125
  "kind": "archive",
126
+ "bytes": 2096005120,
127
+ "sha256": "9cc4aaa79616260e7b69f3342e8686b96317150f838237586bb3146a94fa3ac4",
128
+ "member_count": 100544,
129
+ "unpacked_bytes": 1915740642
130
  },
131
  {
132
  "path": "archives/images-child-00002.tar",
133
  "kind": "archive",
134
+ "bytes": 749475840,
135
+ "sha256": "e4b6c71d5feadf3579747bd217fb1c87b9a9b05160bdefe19b908c5f8e4e4bf2",
136
+ "member_count": 35932,
137
+ "unpacked_bytes": 685053443
138
  },
139
  {
140
+ "path": "archives/annotations-00000.tar",
141
  "kind": "archive",
142
+ "bytes": 621434880,
143
+ "sha256": "31f467ba323acf29cface50a8b4debcee8581d6dd8a4e3a7eb53e56e3533410d",
144
+ "member_count": 38836,
145
+ "unpacked_bytes": 552862459
146
  },
147
  {
148
+ "path": "package/FILTER_RESULTS.md",
149
+ "package_path": "FILTER_RESULTS.md",
150
+ "kind": "package_file",
151
+ "bytes": 733,
152
+ "sha256": "78ed51630bc2986bb59689e315f19618eb2cca67301d7b0d26ebd2aff6122b9e"
 
153
  },
154
  {
155
+ "path": "package/METHODS.md",
156
+ "package_path": "METHODS.md",
157
  "kind": "package_file",
158
+ "bytes": 11751,
159
+ "sha256": "85b5181cef227178b0876f69d7fce367ec3512afd69c28d5ba0a2f1b222f277b"
160
  },
161
  {
162
  "path": "package/README.md",
163
  "package_path": "README.md",
164
  "kind": "package_file",
165
+ "bytes": 4651,
166
+ "sha256": "729b4cb200ee0da3bfc8ba6f58c6da96c7f330dcfbf794f9b7861580725617c4"
167
+ },
168
+ {
169
+ "path": "package/audit/row_decisions.jsonl",
170
+ "package_path": "audit/row_decisions.jsonl",
171
+ "kind": "package_file",
172
+ "bytes": 374926103,
173
+ "sha256": "4fad5bf99b648d11f30feacfeeda9d3e27d5651c84eaf2fdab20327e381d0d32"
174
  },
175
  {
176
  "path": "package/index.json",
177
  "package_path": "index.json",
178
  "kind": "package_file",
179
+ "bytes": 4158,
180
+ "sha256": "dc48425f1d0d8dfe980e00a968a30b8fcef8596a59ea16d768bbe87f92a39f6b"
181
  },
182
  {
183
  "path": "package/manifest.jsonl",
184
  "package_path": "manifest.jsonl",
185
  "kind": "package_file",
186
+ "bytes": 594990807,
187
+ "sha256": "eeda70abfec170771f9084d2330011dcfa8443c2132ea8a2e8a576296e78fa85"
188
  },
189
  {
190
  "path": "package/metadata/bcss/source.json",
 
312
  "bytes": 6447,
313
  "sha256": "6ba5bc0a9a55683e988fc5f3d33207c76da6d5c47c82d505ad391a5f78efcc72"
314
  },
315
+ {
316
+ "path": "package/metadata/unfiltered_export_index.json",
317
+ "package_path": "metadata/unfiltered_export_index.json",
318
+ "kind": "package_file",
319
+ "bytes": 3762,
320
+ "sha256": "a9266b8ef5fcb027a7a7d32638b2f2b70dc9290a26046df68859e07f067ddc78"
321
+ },
322
+ {
323
+ "path": "package/metadata/unfiltered_export_validation.json",
324
+ "package_path": "metadata/unfiltered_export_validation.json",
325
+ "kind": "package_file",
326
+ "bytes": 2070,
327
+ "sha256": "0ca12f96d2406f21b318c2b7694ee9f40f24f34dabc78ffa263ee8b8c93f8049"
328
+ },
329
+ {
330
+ "path": "package/quality_filter_policy.json",
331
+ "package_path": "quality_filter_policy.json",
332
+ "kind": "package_file",
333
+ "bytes": 2005,
334
+ "sha256": "074cb1762681d91ba1a2be8a32ef29acfcbab80ffd2c71723b3a3defe0ccf95a"
335
+ },
336
+ {
337
+ "path": "package/quality_filter_report.json",
338
+ "package_path": "quality_filter_report.json",
339
+ "kind": "package_file",
340
+ "bytes": 31066,
341
+ "sha256": "72a1ef167ffada5ccd8c804b82c0c4fc48ccb755d33e1d2229393a47bab155ca"
342
+ },
343
+ {
344
+ "path": "package/quality_validation.json",
345
+ "package_path": "quality_validation.json",
346
+ "kind": "package_file",
347
+ "bytes": 1038,
348
+ "sha256": "fef41895798561abd3d5a0366269cca814b350a6830842b01abfcfaaa7f94c56"
349
+ },
350
+ {
351
+ "path": "package/review/bcss_excluded.jpg",
352
+ "package_path": "review/bcss_excluded.jpg",
353
+ "kind": "package_file",
354
+ "bytes": 127862,
355
+ "sha256": "f7f554a87e16f07cf0f837a01fa5ceb3f0c03eaef4f9bd07320636bc3bd1e522"
356
+ },
357
+ {
358
+ "path": "package/review/bcss_kept.jpg",
359
+ "package_path": "review/bcss_kept.jpg",
360
+ "kind": "package_file",
361
+ "bytes": 128691,
362
+ "sha256": "f82ea0d297136405c04eedd1b9191e4323aa6851f575aa563ebd2b5acbb3edfb"
363
+ },
364
+ {
365
+ "path": "package/review/lizard_excluded.jpg",
366
+ "package_path": "review/lizard_excluded.jpg",
367
+ "kind": "package_file",
368
+ "bytes": 126417,
369
+ "sha256": "f915ef505aa2bb0b96c33c58ef9c28b680be6bbac5679f7928b244eae4862c56"
370
+ },
371
+ {
372
+ "path": "package/review/lizard_kept.jpg",
373
+ "package_path": "review/lizard_kept.jpg",
374
+ "kind": "package_file",
375
+ "bytes": 112718,
376
+ "sha256": "67939f9afd3e7109952f39a95d2d48b32d7f7d39543089373d062c638aaaa100"
377
+ },
378
+ {
379
+ "path": "package/review/low_focus_candidates.json",
380
+ "package_path": "review/low_focus_candidates.json",
381
+ "kind": "package_file",
382
+ "bytes": 106135,
383
+ "sha256": "a97f172a24820007637ac86bf65b00a65c776477faf80aa4a3663f1a63440725"
384
+ },
385
+ {
386
+ "path": "package/review/midogpp_kept.jpg",
387
+ "package_path": "review/midogpp_kept.jpg",
388
+ "kind": "package_file",
389
+ "bytes": 132277,
390
+ "sha256": "824c982fa5dcc0b401746daf77dbb9c88df1765af06aa77af49097940c283f57"
391
+ },
392
+ {
393
+ "path": "package/review/nucls_excluded.jpg",
394
+ "package_path": "review/nucls_excluded.jpg",
395
+ "kind": "package_file",
396
+ "bytes": 114950,
397
+ "sha256": "6c01c1c9793a10edf3ed0826d0f367b6838fed43d848bdd98354f0398e7fb8c7"
398
+ },
399
+ {
400
+ "path": "package/review/nucls_kept.jpg",
401
+ "package_path": "review/nucls_kept.jpg",
402
+ "kind": "package_file",
403
+ "bytes": 107330,
404
+ "sha256": "8e96f93222135f9d40abb688ed3b219b409831f843b1ed093320ccb9ae4e2225"
405
+ },
406
+ {
407
+ "path": "package/review/nuinsseg_excluded.jpg",
408
+ "package_path": "review/nuinsseg_excluded.jpg",
409
+ "kind": "package_file",
410
+ "bytes": 70846,
411
+ "sha256": "4e9a62349d81f2678a31884c335dca64ec4213a6f11fada327f7dfd6a7ce1c00"
412
+ },
413
+ {
414
+ "path": "package/review/nuinsseg_kept.jpg",
415
+ "package_path": "review/nuinsseg_kept.jpg",
416
+ "kind": "package_file",
417
+ "bytes": 66418,
418
+ "sha256": "5c405175ff561d9c7704a324b46a0d66a1143fe5c23bb28366811858a8d03aab"
419
+ },
420
+ {
421
+ "path": "package/review/pannuke_excluded.jpg",
422
+ "package_path": "review/pannuke_excluded.jpg",
423
+ "kind": "package_file",
424
+ "bytes": 109096,
425
+ "sha256": "6759510a5f0c04aa602cec406fc63d9bbdb244b0acf58aa7e6dea6db2c79ede4"
426
+ },
427
+ {
428
+ "path": "package/review/pannuke_kept.jpg",
429
+ "package_path": "review/pannuke_kept.jpg",
430
+ "kind": "package_file",
431
+ "bytes": 92639,
432
+ "sha256": "33cce6ad83b6d05c732b324869f1ee41262c52ab28e3664412b71b546ecf9c40"
433
+ },
434
+ {
435
+ "path": "package/review/refpath_train_excluded.jpg",
436
+ "package_path": "review/refpath_train_excluded.jpg",
437
+ "kind": "package_file",
438
+ "bytes": 114505,
439
+ "sha256": "b8881b702b58bc04653af070eac2ba9c39699c3c777eb12a24391c7b9a9f115b"
440
+ },
441
+ {
442
+ "path": "package/review/refpath_train_kept.jpg",
443
+ "package_path": "review/refpath_train_kept.jpg",
444
+ "kind": "package_file",
445
+ "bytes": 114201,
446
+ "sha256": "8138d4c85b0e21e525f3141c3f7cd0ffea98f7a79a4a28ac320fa784d797f3ab"
447
+ },
448
+ {
449
+ "path": "package/review/samples.json",
450
+ "package_path": "review/samples.json",
451
+ "kind": "package_file",
452
+ "bytes": 34202,
453
+ "sha256": "60f64c686f7727c032d4ac2fc9313eef2458a86b4d117044ed3a99273a66a375"
454
+ },
455
+ {
456
+ "path": "package/sampling_config.json",
457
+ "package_path": "sampling_config.json",
458
+ "kind": "package_file",
459
+ "bytes": 276,
460
+ "sha256": "7c093489caf159f3e3f66e18637e65bc33955eebb82c96090d05f2f0ae220d9f"
461
+ },
462
+ {
463
+ "path": "package/storage_compaction.json",
464
+ "package_path": "storage_compaction.json",
465
+ "kind": "package_file",
466
+ "bytes": 21267,
467
+ "sha256": "34bb42b0ba8901f402b7267925295bfd44705cb7d9516b22cec742d03e073e56"
468
+ },
469
  {
470
  "path": "package/training_data.py",
471
  "package_path": "training_data.py",
472
  "kind": "package_file",
473
+ "bytes": 4999,
474
+ "sha256": "127e5e2d79987718a737dcbc97fa8021204797bfc941be8c4ab3908dcb27c0f5"
475
  },
476
  {
477
  "path": "package/validation.json",
478
  "package_path": "validation.json",
479
  "kind": "package_file",
480
+ "bytes": 2063,
481
+ "sha256": "5e08fe863eb62ba0b91036d30f27c759fcc712b9472063bd7c1758b3c55ceccf"
482
  },
483
  {
484
  "path": "README.md",
485
  "kind": "tool",
486
+ "bytes": 7090,
487
+ "sha256": "843b7e950af81c918c910e3a3ec3680d472ceacd1b892cd231992c5f0f025a26"
488
  },
489
  {
490
  "path": "tools/restore_package.py",