| { |
| "id": "coverage-20261027", |
| "checkedOn": "2026-11-02", |
| "sharedPriors": [ |
| { |
| "modelId": "ntv3_100m_native", |
| "fromModelId": "ntv3_100m_post", |
| "checkpoint": "InstaDeepAI/NTv3_100M_post", |
| "revision": "b7292f0bd1b5b004d28561783a1890e1ec6f94fd" |
| }, |
| { |
| "modelId": "ntv3_650m_native", |
| "fromModelId": "ntv3_650m_post", |
| "checkpoint": "InstaDeepAI/NTv3_650M_post", |
| "revision": "ad622051abbe9376bdea3f2727863fa559957e9f" |
| } |
| ], |
| "missing": [ |
| { |
| "modelId": "alphagenome_fitted", |
| "taskId": "prior", |
| "status": "unsupported", |
| "reason": "AlphaGenome does not provide nucleotide probabilities for this hidden-base task. Fitting its functional readouts does not supply a sequence-prior head." |
| }, |
| { |
| "modelId": "alphagenome", |
| "taskId": "prior", |
| "status": "unsupported", |
| "reason": "AlphaGenome predicts functional measurements, not nucleotide probabilities for a hidden base." |
| }, |
| { |
| "modelId": "enformer", |
| "taskId": "prior", |
| "status": "unsupported", |
| "reason": "Enformer predicts functional measurements, not nucleotide probabilities for a hidden base." |
| }, |
| { |
| "modelId": "enformer", |
| "taskId": "opensplice", |
| "status": "unsupported", |
| "reason": "Enformer has no native splice output. A splicing predictor fitted to its representations would be a separate model/readout entry." |
| }, |
| { |
| "modelId": "dnabert2", |
| "taskId": "prior", |
| "status": "unsupported", |
| "reason": "DNABERT-2 predicts multi-base tokens. A forced single-base query was tested, but its tokenization mismatch prevents a directly comparable prior score.", |
| "diagnosticSourceId": "dnabert2-prior-diagnostic" |
| }, |
| { |
| "modelId": "markov0", |
| "taskId": "opensplice", |
| "status": "unsupported", |
| "reason": "Base composition is a sequence-prior baseline; it does not predict functional outcomes." |
| }, |
| { |
| "modelId": "markov0", |
| "taskId": "context", |
| "status": "unsupported", |
| "reason": "Base composition is a sequence-prior baseline; it does not predict functional outcomes." |
| }, |
| { |
| "modelId": "markov0", |
| "taskId": "tissue_identification", |
| "status": "unsupported", |
| "reason": "Base composition is a sequence-prior baseline; it does not predict functional outcomes." |
| }, |
| { |
| "modelId": "markov0", |
| "taskId": "background", |
| "status": "unsupported", |
| "reason": "Base composition is a sequence-prior baseline; it does not predict functional outcomes." |
| }, |
| { |
| "modelId": "markov0", |
| "taskId": "repair_percentile", |
| "status": "unsupported", |
| "reason": "Base composition is a sequence-prior baseline; it does not predict functional outcomes." |
| }, |
| { |
| "modelId": "markov0", |
| "taskId": "cell_selective", |
| "status": "unsupported", |
| "reason": "Base composition is a sequence-prior baseline; it does not predict functional outcomes." |
| }, |
| { |
| "modelId": "markov0", |
| "taskId": "atlas_profile", |
| "status": "unsupported", |
| "reason": "Base composition is a sequence-prior baseline; it does not predict functional outcomes." |
| }, |
| { |
| "modelId": "kmer_3_6", |
| "taskId": "prior", |
| "status": "unsupported", |
| "reason": "This baseline was trained to predict functional measurements and has no hidden-base probability output." |
| }, |
| { |
| "modelId": "onehot_resnet", |
| "taskId": "prior", |
| "status": "unsupported", |
| "reason": "This baseline was trained to predict functional measurements and has no hidden-base probability output." |
| }, |
| { |
| "modelId": "spliceai", |
| "taskId": "prior", |
| "status": "unsupported", |
| "reason": "SpliceAI predicts splice sites, not nucleotide probabilities for a hidden base." |
| }, |
| { |
| "modelId": "spliceai", |
| "taskId": "context", |
| "status": "unsupported", |
| "reason": "SpliceAI is a splicing specialist; this endpoint requires a different functional output." |
| }, |
| { |
| "modelId": "spliceai", |
| "taskId": "tissue_identification", |
| "status": "unsupported", |
| "reason": "SpliceAI is a splicing specialist; this endpoint requires a different functional output." |
| }, |
| { |
| "modelId": "spliceai", |
| "taskId": "background", |
| "status": "unsupported", |
| "reason": "SpliceAI is a splicing specialist; this endpoint requires a different functional output." |
| }, |
| { |
| "modelId": "spliceai", |
| "taskId": "repair_percentile", |
| "status": "unsupported", |
| "reason": "SpliceAI is a splicing specialist; this endpoint requires a different functional output." |
| }, |
| { |
| "modelId": "spliceai", |
| "taskId": "cell_selective", |
| "status": "unsupported", |
| "reason": "SpliceAI is a splicing specialist; this endpoint requires a different functional output." |
| }, |
| { |
| "modelId": "spliceai", |
| "taskId": "atlas_profile", |
| "status": "unsupported", |
| "reason": "SpliceAI is a splicing specialist; this endpoint requires a different functional output." |
| } |
| ], |
| "additionalSources": [ |
| { |
| "id": "dnabert2-prior-diagnostic", |
| "title": "DNABERT-2 single-base query audit (excluded from scores)", |
| "snapshotPath": "provenance/coverage-20261027/dnabert2-prior/README.md", |
| "sha256": "7880ca30ea6bdbbf1cf71c78202e4e3109b546b6910ffa2a535f94439539d7b1" |
| }, |
| { |
| "id": "dnabert2-prior-diagnostic-files", |
| "title": "DNABERT-2 diagnostic artifact checksums", |
| "snapshotPath": "provenance/coverage-20261027/dnabert2-prior/SHA256SUMS.json", |
| "sha256": "9e7c1cdec20b1c037ba0405d3b17a9f5daa083553ed75afa58066292856ed2d9" |
| }, |
| { |
| "id": "ceno-full-opensplice", |
| "title": "CENO full OpenSplice evaluation", |
| "snapshotPath": "provenance/coverage-20261027/ceno-opensplice/entry.json", |
| "sha256": "489a42519dd6e9267ce1eff84cba8c25c9bb5feb863b15e44996cf2d5bdc7d11" |
| }, |
| { |
| "id": "ceno-full-opensplice-methods", |
| "title": "CENO evaluation protocol and numerical checks", |
| "snapshotPath": "provenance/coverage-20261027/ceno-opensplice/README.md", |
| "sha256": "d0a373d57344d76116720fd8bbbc4d946ebddc33e26c5b440a5d7b1517d46e7a" |
| }, |
| { |
| "id": "ceno-full-opensplice-files", |
| "title": "CENO evaluation artifact checksums", |
| "snapshotPath": "provenance/coverage-20261027/ceno-opensplice/SHA256SUMS.json", |
| "sha256": "4458b87b47a46dd8d0f678c2ea99b8151b497abf0b567c996e50c892498cac73" |
| }, |
| { |
| "id": "evo2-tissue-identification", |
| "title": "Evo2 completed tissue-identification evaluation", |
| "snapshotPath": "provenance/evo2-tissue-20261102/entry.json", |
| "sha256": "6b1be888062990288244e8657a1462103e2aba687aca9152ee73496a0105766b" |
| }, |
| { |
| "id": "evo2-tissue-identification-methods", |
| "title": "Evo2 extraction and independent evaluation checks", |
| "snapshotPath": "provenance/evo2-tissue-20261102/README.md", |
| "sha256": "7adc9a70eda713700bd91e5eaa23cc54cedb46ad6e5ffd5cb665a93e36b162cc" |
| }, |
| { |
| "id": "evo2-tissue-identification-files", |
| "title": "Evo2 evaluation artifact checksums", |
| "snapshotPath": "provenance/evo2-tissue-20261102/SHA256SUMS.json", |
| "sha256": "a43ae2b3e1594858e8bd37f78165790cf5b63344394c6780f4faf9bc06180051" |
| } |
| ], |
| "evaluations": [ |
| { |
| "modelId": "ceno_1b_1m", |
| "taskId": "opensplice", |
| "sourceId": "ceno-full-opensplice" |
| }, |
| { |
| "modelId": "evo2_20b", |
| "taskId": "tissue_identification", |
| "sourceId": "evo2-tissue-identification" |
| } |
| ] |
| } |
|
|
