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picmus

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The dataset viewer is not available for this subset.

Cannot get the split names for the config 'default' of the dataset.

Exception:    SplitsNotFoundError
Message:      The split names could not be parsed from the dataset config.
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.14/site-packages/datasets/inspect.py", line 286, in get_dataset_config_info
                  for split_generator in builder._split_generators(
                                         ~~~~~~~~~~~~~~~~~~~~~~~~~^
                      StreamingDownloadManager(base_path=builder.base_path, download_config=download_config)
                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                  )
                  ^
                File "/usr/local/lib/python3.14/site-packages/datasets/packaged_modules/hdf5/hdf5.py", line 49, in _split_generators
                  import h5py
              ModuleNotFoundError: No module named 'h5py'
              
              The above exception was the direct cause of the following exception:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/split_names.py", line 71, in compute_split_names_from_streaming_response
                  for split in get_dataset_split_names(
                               ~~~~~~~~~~~~~~~~~~~~~~~^
                      path=dataset,
                      ^^^^^^^^^^^^^
                      config_name=config,
                      ^^^^^^^^^^^^^^^^^^^
                      token=hf_token,
                      ^^^^^^^^^^^^^^^
                  )
                  ^
                File "/usr/local/lib/python3.14/site-packages/datasets/inspect.py", line 340, in get_dataset_split_names
                  info = get_dataset_config_info(
                      path,
                  ...<6 lines>...
                      **config_kwargs,
                  )
                File "/usr/local/lib/python3.14/site-packages/datasets/inspect.py", line 291, in get_dataset_config_info
                  raise SplitsNotFoundError("The split names could not be parsed from the dataset config.") from err
              datasets.inspect.SplitsNotFoundError: The split names could not be parsed from the dataset config.

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PICMUS - Plane-Wave Imaging Challenge in Medical UltraSound

This dataset is a zea-format (HDF5) conversion of the PICMUS (IEEE IUS 2016) challenge data for evaluating plane-wave image reconstruction quality.

Property	Value
Modality	2-D plane-wave ultrasound (IQ and RF)
Probe	Verasonics Vantage + L11-4v (128 elements, 5.208 MHz)
Partitions	Simulation, Experimental, In-vivo (carotid artery)
Data types	IQ (complex) and RF (real) channel data
Splits	simulation/, database/ (experimental), in_vivo/

Conversion

This dataset was downloaded, converted to zea format, and uploaded using the zea data converter:

zea convert picmus <src> <dst> --download

Dataset structure

simulation/
  contrast_speckle/
    contrast_speckle_simu_dataset_iq/
      contrast_speckle_simu_dataset_iq.hdf5
  ...
database/
  experiments/
    contrast_speckle/
      contrast_speckle_expe_dataset_iq/...
      contrast_speckle_expe_dataset_rf/...
    ...
in_vivo/
  carotid_long/
    carotid_long_expe_dataset_iq/...
  carotid_cross/
    ...

Each HDF5 file follows the zea data format and contains:

data/raw_data - channel data, shape (1, n_tx, n_ax, n_el, n_ch) where n_ch=1 for RF data and n_ch=2 (I/Q) for IQ data
scan/ - plane-wave acquisition parameters (angles, delays, geometry, …)
metadata/ - subject type and citation credit

License

The datasets and code provided on PICMUS are free of use. The only request is to refer properly to PICMUS - The Plane Wave Imaging Challenge in Medical UltraSound and quote the proceeding paper.

Citation

If you use this dataset, please cite:

@inproceedings{liebgott2016picmus,
  title     = {Plane-Wave Imaging Challenge in Medical Ultrasound},
  author    = {Liebgott, Herve and Rodriguez-Molares, Alfonso and
               Cervenansky, Frederic and D'hooge, Jan and Bernard, Olivier},
  booktitle = {2016 IEEE International Ultrasonics Symposium (IUS)},
  pages     = {1--4},
  year      = {2016},
  doi       = {10.1109/ULTSYM.2016.7728908}
}

PICMUS - Plane-Wave Imaging Challenge in Medical UltraSound

Conversion

Dataset structure

License

Citation

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