🤝 Open to Collab

Logan Hallee PRO

lhallee

Synthyra

·

https://synthyra.com/

AI & ML interests

I'm interested in using protein language models to design and annotate amino acid sequences.

Recent Activity

updated a collection about 2 hours ago

Annotation Vocabulary

updated a collection about 13 hours ago

updated a collection 1 day ago

Protein Property Datasets

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Organizations

New activity in tattabio/flashppi2 23 days ago

Dataset available?

#1 opened 23 days ago by

New activity in Synthyra/ESM2-150M 8 months ago

Lower results?

#1 opened 8 months ago by

New activity in Synthyra/Profluent-E1-150M 9 months ago

The checkpoint you are trying to load has model type `E1` but Transformers does not recognize this architecture

#1 opened 9 months ago by

New activity in Synthyra/ESMplusplus_small 11 months ago

Thanks for this!

#4 opened 11 months ago by

New activity in Synthyra/ESM2-8M 12 months ago

CLS pooling with ESM2

#1 opened 12 months ago by

nestorgonzalovich

New activity in Synthyra/ESM2-650M 12 months ago

Confusion about ESM-650M's Output Layer: Independent Decoder vs. Weight Tying

#1 opened 12 months ago by

New activity in Synthyra/ESMplusplus_large about 1 year ago

Mismatch Between Logits Output Size and Vocab Size in ESMplusplus Model for MLM Task

#10 opened about 1 year ago by

Have you or your group also done similar work for ESM3？

#9 opened about 1 year ago by

The outputs of ESMC 600M and your model are not fully consistent

#8 opened about 1 year ago by

New activity in GleghornLab/DSM_650 over 1 year ago

Unconditional Sequence Generation does not work

#2 opened over 1 year ago by

Cannot import DSM model

#1 opened over 1 year ago by

New activity in Synthyra/ESMplusplus_small over 1 year ago

Bug in attention map computation

#3 opened over 1 year ago by

New activity in lhallee/foldseek_dataset over 1 year ago

Request for info

#2 opened over 1 year ago by

New activity in boltz-community/boltz-1 over 1 year ago

🚩 Report: Ethical issue(s)

#4 opened almost 2 years ago by

New activity in Synthyra/ESMplusplus_large over 1 year ago

Returning attention maps - an empty object returned

#7 opened over 1 year ago by

Using ESM-C Original Weights or Re-Trained?

#6 opened over 1 year ago by

question for logits

#4 opened over 1 year ago by

New activity in Synthyra/ESMplusplus_small over 1 year ago

Always predicts <unk> issue

#2 opened over 1 year ago by

New activity in Synthyra/ESMplusplus_large over 1 year ago

Some instructions regarding fine-tuning & classification with ESM++ model

#3 opened over 1 year ago by

New activity in Synthyra/FastESM2_650 over 1 year ago

Which Layer to use for Representations?

#2 opened over 1 year ago by