30.7 GB

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History: 24 commits

lucascamillomd

Extend catalog to 281 predictors for pyaging 0.5.4

e306baa verified 30 minutes ago

supporting_files
Add current pyaging static data dependencies 3 months ago
.gitattributes

1.73 kB
Add current pyaging static data dependencies 3 months ago
ENCFF386QWG.bigWig

1.04 GB
xet

Add current pyaging static data dependencies 3 months ago
Ensembl-105-EnsDb-for-Homo-sapiens-genes.csv

14.2 MB
xet

Add current pyaging static data dependencies 3 months ago
GSE130735_subset.pkl
Detected Pickle imports (10)
- "numpy.core.multiarray._reconstruct",
- "pandas._libs.internals._unpickle_block",
- "numpy.core.numeric._frombuffer",
- "numpy.dtype",
- "pandas.core.indexes.base.Index",
- "pandas.core.indexes.base._new_Index",
- "builtins.slice",
- "numpy.ndarray",
- "pandas.core.internals.managers.BlockManager",
- "pandas.core.frame.DataFrame"
How to fix it?
229 MB
xet

Add current pyaging static data dependencies 3 months ago
GSE139307.pkl
Detected Pickle imports (8)
- "numpy.core.multiarray._reconstruct",
- "pandas.core.frame.DataFrame",
- "pandas.core.internals.managers.BlockManager",
- "pandas.core.indexes.base._new_Index",
- "builtins.slice",
- "numpy.dtype",
- "pandas.core.indexes.base.Index",
- "numpy.ndarray"
How to fix it?
152 MB
xet

Add current pyaging static data dependencies 3 months ago
GSE193140.pkl
Detected Pickle imports (10)
- "numpy.core.multiarray._reconstruct",
- "pandas._libs.internals._unpickle_block",
- "pandas.core.frame.DataFrame",
- "pandas.core.internals.managers.BlockManager",
- "pandas.core.indexes.base._new_Index",
- "numpy.core.numeric._frombuffer",
- "builtins.slice",
- "numpy.dtype",
- "pandas.core.indexes.base.Index",
- "numpy.ndarray"
How to fix it?
103 MB
xet

Add current pyaging static data dependencies 3 months ago
GSE223748_subset.pkl
Detected Pickle imports (10)
- "numpy.core.multiarray._reconstruct",
- "pandas._libs.internals._unpickle_block",
- "pandas.core.frame.DataFrame",
- "pandas.core.internals.managers.BlockManager",
- "pandas.core.indexes.base._new_Index",
- "numpy.core.numeric._frombuffer",
- "builtins.slice",
- "numpy.dtype",
- "pandas.core.indexes.base.Index",
- "numpy.ndarray"
How to fix it?
30.5 MB
xet

Add current pyaging static data dependencies 3 months ago
GSE65765_CPM.pkl
Detected Pickle imports (10)
- "pandas.core.indexes.base.Index",
- "pandas._libs.internals._unpickle_block",
- "pandas.core.indexes.base._new_Index",
- "numpy.core.multiarray._reconstruct",
- "numpy.core.numeric._frombuffer",
- "numpy.dtype",
- "pandas.core.internals.managers.BlockManager",
- "builtins.slice",
- "numpy.ndarray",
- "pandas.core.frame.DataFrame"
How to fix it?
2.29 MB
xet

Add current pyaging static data dependencies 3 months ago
README.md

2.91 kB
Extend catalog to 281 predictors for pyaging 0.5.4 30 minutes ago
abec.pt
Detected Pickle imports (8)
- "pyaging.models._base_models.LinearModel",
- "torch.nn.modules.linear.Linear",
- "collections.OrderedDict",
- "pyaging.models._models.ABEC",
- "torch._utils._rebuild_tensor_v2",
- "torch._utils._rebuild_parameter",
- "__builtin__.set",
- "torch.DoubleStorage"
How to fix it?
51.8 kB
xet

Harmonize audited clock metadata 3 months ago
adbahadosingh.pt
Detected Pickle imports (8)
- "pyaging.models._models.ADBahadoSingh",
- "pyaging.models._base_models.LinearModel",
- "collections.OrderedDict",
- "torch.nn.modules.linear.Linear",
- "torch._utils._rebuild_tensor_v2",
- "torch._utils._rebuild_parameter",
- "__builtin__.set",
- "torch.DoubleStorage"
How to fix it?
4.84 kB
xet

Harmonize audited clock metadata 3 months ago
all_clock_metadata.pt

330 kB
xet

Extend catalog to 281 predictors for pyaging 0.5.4 30 minutes ago
altumage.pt
Detected Pickle imports (14)
- "torch.LongStorage",
- "_codecs.encode",
- "torch.nn.modules.batchnorm.BatchNorm1d",
- "pyaging.models._base_models.AltumAgeNeuralNetwork",
- "torch.nn.modules.linear.Linear",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "torch._utils._rebuild_parameter",
- "numpy.dtype",
- "pyaging.models._models.AltumAge",
- "__builtin__.set",
- "torch.DoubleStorage",
- "numpy.ndarray",
- "numpy._core.multiarray._reconstruct"
How to fix it?
6.8 MB
xet

Harmonize audited clock metadata 3 months ago
bitage.pt
Detected Pickle imports (8)
- "pyaging.models._models.BiTAge",
- "pyaging.models._base_models.LinearModel",
- "torch.nn.modules.linear.Linear",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "torch._utils._rebuild_parameter",
- "__builtin__.set",
- "torch.DoubleStorage"
How to fix it?
22.8 kB
xet

Harmonize audited clock metadata 3 months ago
blood_chemistry_example.pkl
Detected Pickle imports (10)
- "pandas.DataFrame",
- "pandas.core.indexes.base._new_Index",
- "pandas.core.internals.managers.BlockManager",
- "numpy.ndarray",
- "builtins.slice",
- "numpy.dtype",
- "numpy._core.numeric._frombuffer",
- "pandas._libs.internals._unpickle_block",
- "numpy._core.multiarray._reconstruct",
- "pandas.Index"
How to fix it?
5.38 kB
xet

Store the example frame with numpy-backed labels so it loads without pyarrow about 1 month ago
bocklandt.pt
Detected Pickle imports (8)
- "pyaging.models._base_models.LinearModel",
- "torch.nn.modules.linear.Linear",
- "collections.OrderedDict",
- "pyaging.models._models.Bocklandt",
- "torch._utils._rebuild_tensor_v2",
- "torch._utils._rebuild_parameter",
- "__builtin__.set",
- "torch.DoubleStorage"
How to fix it?
4.65 kB
xet

Harmonize audited clock metadata 3 months ago
bohlin.pt
Detected Pickle imports (8)
- "pyaging.models._models.Bohlin",
- "pyaging.models._base_models.LinearModel",
- "torch.nn.modules.linear.Linear",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "torch._utils._rebuild_parameter",
- "__builtin__.set",
- "torch.DoubleStorage"
How to fix it?
11.5 kB
xet

Harmonize audited clock metadata 3 months ago
cabec.pt
Detected Pickle imports (8)
- "pyaging.models._base_models.LinearModel",
- "torch.nn.modules.linear.Linear",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "torch._utils._rebuild_parameter",
- "__builtin__.set",
- "torch.DoubleStorage",
- "pyaging.models._models.cABEC"
How to fix it?
57.4 kB
xet

Harmonize audited clock metadata 3 months ago
camilloh3k27ac.pt
Detected Pickle imports (8)
- "torch.nn.modules.linear.Linear",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "torch._utils._rebuild_parameter",
- "pyaging.models._models.CamilloH3K27ac",
- "__builtin__.set",
- "torch.DoubleStorage",
- "pyaging.models._base_models.PCLinearModel"
How to fix it?
3.58 MB
xet

Harmonize audited clock metadata 3 months ago
camilloh3k27me3.pt
Detected Pickle imports (8)
- "torch.nn.modules.linear.Linear",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "torch._utils._rebuild_parameter",
- "pyaging.models._models.CamilloH3K27me3",
- "__builtin__.set",
- "torch.DoubleStorage",
- "pyaging.models._base_models.PCLinearModel"
How to fix it?
2.17 MB
xet

Harmonize audited clock metadata 3 months ago
camilloh3k36me3.pt
Detected Pickle imports (8)
- "torch.nn.modules.linear.Linear",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "torch._utils._rebuild_parameter",
- "__builtin__.set",
- "torch.DoubleStorage",
- "pyaging.models._models.CamilloH3K36me3",
- "pyaging.models._base_models.PCLinearModel"
How to fix it?
1.81 MB
xet

Harmonize audited clock metadata 3 months ago
camilloh3k4me1.pt
Detected Pickle imports (8)
- "pyaging.models._models.CamilloH3K4me1",
- "torch.nn.modules.linear.Linear",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "torch._utils._rebuild_parameter",
- "__builtin__.set",
- "torch.DoubleStorage",
- "pyaging.models._base_models.PCLinearModel"
How to fix it?
1.91 MB
xet

Harmonize audited clock metadata 3 months ago
camilloh3k4me3.pt
Detected Pickle imports (8)
- "pyaging.models._models.CamilloH3K4me3",
- "torch.nn.modules.linear.Linear",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "torch._utils._rebuild_parameter",
- "__builtin__.set",
- "torch.DoubleStorage",
- "pyaging.models._base_models.PCLinearModel"
How to fix it?
3.53 MB
xet

Harmonize audited clock metadata 3 months ago
camilloh3k9ac.pt
Detected Pickle imports (8)
- "torch.nn.modules.linear.Linear",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "torch._utils._rebuild_parameter",
- "__builtin__.set",
- "torch.DoubleStorage",
- "pyaging.models._base_models.PCLinearModel",
- "pyaging.models._models.CamilloH3K9ac"
How to fix it?
36.8 kB
xet

Harmonize audited clock metadata 3 months ago
camilloh3k9me3.pt
Detected Pickle imports (8)
- "torch.nn.modules.linear.Linear",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "torch._utils._rebuild_parameter",
- "__builtin__.set",
- "torch.DoubleStorage",
- "pyaging.models._base_models.PCLinearModel",
- "pyaging.models._models.CamilloH3K9me3"
How to fix it?
690 kB
xet

Harmonize audited clock metadata 3 months ago
camillopanhistone.pt
Detected Pickle imports (8)
- "torch._utils._rebuild_parameter",
- "collections.OrderedDict",
- "torch.DoubleStorage",
- "pyaging.models._base_models.PCLinearModel",
- "__builtin__.set",
- "pyaging.models._models.CamilloPanHistone",
- "torch.nn.modules.linear.Linear",
- "torch._utils._rebuild_tensor_v2"
How to fix it?
53.8 MB
xet

Harmonize audited clock metadata 3 months ago
celldrift.provenance.json

1.03 kB
Add original-author clock artifacts for pyaging 0.5.4 about 1 hour ago
celldrift.pt

104 kB
xet

Add original-author clock artifacts for pyaging 0.5.4 about 1 hour ago
cellpopage.pt
Detected Pickle imports (8)
- "pyaging.models._models.CellPopAge",
- "pyaging.models._base_models.LinearModel",
- "torch.nn.modules.linear.Linear",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "torch._utils._rebuild_parameter",
- "__builtin__.set",
- "torch.DoubleStorage"
How to fix it?
75.6 kB
xet

Harmonize audited clock metadata 3 months ago
compil6.pt
Detected Pickle imports (8)
- "pyaging.models._base_models.LinearModel",
- "torch.nn.modules.linear.Linear",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "torch._utils._rebuild_parameter",
- "pyaging.models._models.CompIL6",
- "__builtin__.set",
- "torch.DoubleStorage"
How to fix it?
5.48 kB
xet

Harmonize audited clock metadata 3 months ago
corticalclock.pt
Detected Pickle imports (8)
- "pyaging.models._base_models.LinearModel",
- "torch.nn.modules.linear.Linear",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "torch._utils._rebuild_parameter",
- "__builtin__.set",
- "torch.DoubleStorage",
- "pyaging.models._models.CorticalClock"
How to fix it?
17.3 kB
xet

Harmonize audited clock metadata 3 months ago
cpgptgrimage3.pt
Detected Pickle imports (12)
- "_codecs.encode",
- "pyaging.models._base_models.LinearModel",
- "torch.nn.modules.linear.Linear",
- "collections.OrderedDict",
- "pyaging.models._models.CpGPTGrimAge3",
- "torch._utils._rebuild_tensor_v2",
- "torch._utils._rebuild_parameter",
- "numpy.dtype",
- "__builtin__.set",
- "torch.DoubleStorage",
- "numpy.ndarray",
- "numpy._core.multiarray._reconstruct"
How to fix it?
6.05 kB
xet

Harmonize audited clock metadata 3 months ago
cpgptpcgrimage3.pt
Detected Pickle imports (12)
- "_codecs.encode",
- "pyaging.models._base_models.LinearModel",
- "torch.nn.modules.linear.Linear",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "torch._utils._rebuild_parameter",
- "numpy.dtype",
- "torch.DoubleStorage",
- "pyaging.models._models.CpGPTPCGrimAge3",
- "__builtin__.set",
- "numpy.ndarray",
- "numpy._core.multiarray._reconstruct"
How to fix it?
14.6 kB
xet

Harmonize audited clock metadata 3 months ago
ctsliver.pt
Detected Pickle imports (8)
- "pyaging.models._models.CTSLiver",
- "pyaging.models._base_models.LinearModel",
- "torch.nn.modules.linear.Linear",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "torch._utils._rebuild_parameter",
- "__builtin__.set",
- "torch.DoubleStorage"
How to fix it?
6.89 kB
xet

Harmonize audited clock metadata 3 months ago
cvdwesterman.pt
Detected Pickle imports (8)
- "pyaging.models._models.CVDWesterman",
- "pyaging.models._base_models.LinearModel",
- "torch.nn.modules.linear.Linear",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "torch._utils._rebuild_parameter",
- "__builtin__.set",
- "torch.DoubleStorage"
How to fix it?
11.1 kB
xet

Harmonize audited clock metadata 3 months ago
deconvolutebloodepicbcell.pt
Detected Pickle imports (5)
- "pyaging.models._models.DeconvoluteBloodEPIC",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "__builtin__.set",
- "torch.DoubleStorage"
How to fix it?
49.2 kB
xet

Harmonize audited clock metadata 3 months ago
deconvolutebloodepiccd4tcell.pt
Detected Pickle imports (5)
- "pyaging.models._models.DeconvoluteBloodEPIC",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "__builtin__.set",
- "torch.DoubleStorage"
How to fix it?
49.2 kB
xet

Harmonize audited clock metadata 3 months ago
deconvolutebloodepiccd8tcell.pt
Detected Pickle imports (5)
- "pyaging.models._models.DeconvoluteBloodEPIC",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "__builtin__.set",
- "torch.DoubleStorage"
How to fix it?
49.2 kB
xet

Harmonize audited clock metadata 3 months ago
deconvolutebloodepicmonocyte.pt
Detected Pickle imports (5)
- "pyaging.models._models.DeconvoluteBloodEPIC",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "__builtin__.set",
- "torch.DoubleStorage"
How to fix it?
49.2 kB
xet

Harmonize audited clock metadata 3 months ago
deconvolutebloodepicneutrophil.pt
Detected Pickle imports (5)
- "pyaging.models._models.DeconvoluteBloodEPIC",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "__builtin__.set",
- "torch.DoubleStorage"
How to fix it?
49.2 kB
xet

Harmonize audited clock metadata 3 months ago
deconvolutebloodepicnkcell.pt
Detected Pickle imports (5)
- "pyaging.models._models.DeconvoluteBloodEPIC",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "__builtin__.set",
- "torch.DoubleStorage"
How to fix it?
49.2 kB
xet

Harmonize audited clock metadata 3 months ago
depressionbarbu.pt
Detected Pickle imports (8)
- "pyaging.models._base_models.LinearModel",
- "torch.nn.modules.linear.Linear",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "torch._utils._rebuild_parameter",
- "__builtin__.set",
- "torch.DoubleStorage",
- "pyaging.models._models.DepressionBarbu"
How to fix it?
9.96 kB
xet

Harmonize audited clock metadata 3 months ago
dnamfili.pt
Detected Pickle imports (8)
- "pyaging.models._base_models.LinearModel",
- "torch.nn.modules.linear.Linear",
- "collections.OrderedDict",
- "pyaging.models._models.DNAmFILi",
- "torch._utils._rebuild_tensor_v2",
- "torch._utils._rebuild_parameter",
- "__builtin__.set",
- "torch.DoubleStorage"
How to fix it?
5.03 kB
xet

Harmonize audited clock metadata 3 months ago
dnamfitage.pt
Detected Pickle imports (9)
- "torch.LongStorage",
- "pyaging.models._base_models.LinearModel",
- "torch.nn.modules.linear.Linear",
- "collections.OrderedDict",
- "pyaging.models._models.DNAmFitAge",
- "torch._utils._rebuild_tensor_v2",
- "torch._utils._rebuild_parameter",
- "__builtin__.set",
- "torch.DoubleStorage"
How to fix it?
35.1 kB
xet

Harmonize audited clock metadata 3 months ago
dnamfitagevo2max.pt
Detected Pickle imports (8)
- "pyaging.models._models.DNAmFitAgeVO2Max",
- "pyaging.models._base_models.LinearModel",
- "torch.nn.modules.linear.Linear",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "torch._utils._rebuild_parameter",
- "__builtin__.set",
- "torch.DoubleStorage"
How to fix it?
5.93 kB
xet

Harmonize audited clock metadata 3 months ago
dnamic.pt
Detected Pickle imports (8)
- "pyaging.models._base_models.LinearModel",
- "torch.nn.modules.linear.Linear",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "pyaging.models._models.DNAmIC",
- "torch._utils._rebuild_parameter",
- "__builtin__.set",
- "torch.DoubleStorage"
How to fix it?
7.08 kB
xet

Harmonize audited clock metadata 3 months ago
dnamphenoage.pt
Detected Pickle imports (8)
- "pyaging.models._base_models.LinearModel",
- "torch.nn.modules.linear.Linear",
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "torch._utils._rebuild_parameter",
- "__builtin__.set",
- "torch.DoubleStorage",
- "pyaging.models._models.DNAmPhenoAge"
How to fix it?
18.7 kB
xet

Harmonize audited clock metadata 3 months ago
dnamphenoagenonprc.provenance.json

462 Bytes
Add original-author clock artifacts for pyaging 0.5.4 about 1 hour ago
dnamphenoagenonprc.pt

20.8 kB
xet

Add original-author clock artifacts for pyaging 0.5.4 about 1 hour ago

Detected Pickle imports (10)

Detected Pickle imports (8)

Detected Pickle imports (10)

Detected Pickle imports (10)

Detected Pickle imports (10)

Detected Pickle imports (8)

Detected Pickle imports (8)

Detected Pickle imports (14)

Detected Pickle imports (8)

Detected Pickle imports (10)

Detected Pickle imports (8)

Detected Pickle imports (8)

Detected Pickle imports (8)

Detected Pickle imports (8)

Detected Pickle imports (8)

Detected Pickle imports (8)

Detected Pickle imports (8)

Detected Pickle imports (8)

Detected Pickle imports (8)

Detected Pickle imports (8)

Detected Pickle imports (8)

Detected Pickle imports (8)

Detected Pickle imports (8)

Detected Pickle imports (8)

Detected Pickle imports (12)

Detected Pickle imports (12)

Detected Pickle imports (8)

Detected Pickle imports (8)

Detected Pickle imports (5)

Detected Pickle imports (5)

Detected Pickle imports (5)

Detected Pickle imports (5)

Detected Pickle imports (5)

Detected Pickle imports (5)

Detected Pickle imports (8)

Detected Pickle imports (8)

Detected Pickle imports (9)

Detected Pickle imports (8)

Detected Pickle imports (8)

Detected Pickle imports (8)