Daily Papers

Code review is an essential part to software development lifecycle since it aims at guaranteeing the quality of codes. Modern code review activities necessitate developers viewing, understanding and even running the programs to assess logic, functionality, latency, style and other factors. It turns out that developers have to spend far too much time reviewing the code of their peers. Accordingly, it is in significant demand to automate the code review process. In this research, we focus on utilizing pre-training techniques for the tasks in the code review scenario. We collect a large-scale dataset of real-world code changes and code reviews from open-source projects in nine of the most popular programming languages. To better understand code diffs and reviews, we propose CodeReviewer, a pre-trained model that utilizes four pre-training tasks tailored specifically for the code review scenario. To evaluate our model, we focus on three key tasks related to code review activities, including code change quality estimation, review comment generation and code refinement. Furthermore, we establish a high-quality benchmark dataset based on our collected data for these three tasks and conduct comprehensive experiments on it. The experimental results demonstrate that our model outperforms the previous state-of-the-art pre-training approaches in all tasks. Further analysis show that our proposed pre-training tasks and the multilingual pre-training dataset benefit the model on the understanding of code changes and reviews.

Commit messages are a valuable resource in comprehension of software evolution, since they provide a record of changes such as feature additions and bug repairs. Unfortunately, programmers often neglect to write good commit messages. Different techniques have been proposed to help programmers by automatically writing these messages. These techniques are effective at describing what changed, but are often verbose and lack context for understanding the rationale behind a change. In contrast, humans write messages that are short and summarize the high level rationale. In this paper, we adapt Neural Machine Translation (NMT) to automatically "translate" diffs into commit messages. We trained an NMT algorithm using a corpus of diffs and human-written commit messages from the top 1k Github projects. We designed a filter to help ensure that we only trained the algorithm on higher-quality commit messages. Our evaluation uncovered a pattern in which the messages we generate tend to be either very high or very low quality. Therefore, we created a quality-assurance filter to detect cases in which we are unable to produce good messages, and return a warning instead.

Code review is a cornerstone of software quality assurance, and recent advances in Large Language Models (LLMs) have shown promise in its automation. However, existing benchmarks for LLM-based code review face three major limitations. Lack of semantic context: most benchmarks provide only code diffs without textual information such as issue descriptions, which are crucial for understanding developer intent. Data quality issues: without rigorous validation, many samples are noisy-e.g., reviews on outdated or irrelevant code-reducing evaluation reliability. Coarse granularity: most benchmarks operate at the file or commit level, overlooking the fine-grained, line-level reasoning essential for precise review. We introduce ContextCRBench, a high-quality, context-rich benchmark for fine-grained LLM evaluation in code review. Our construction pipeline comprises: Raw Data Crawling, collecting 153.7K issues and pull requests from top-tier repositories; Comprehensive Context Extraction, linking issue-PR pairs for textual context and extracting the full surrounding function or class for code context; and Multi-stage Data Filtering, combining rule-based and LLM-based validation to remove outdated, malformed, or low-value samples, resulting in 67,910 context-enriched entries. ContextCRBench supports three evaluation scenarios aligned with the review workflow: hunk-level quality assessment, line-level defect localization, and line-level comment generation. Evaluating eight leading LLMs (four closed-source and four open-source) reveals that textual context yields greater performance gains than code context alone, while current LLMs remain far from human-level review ability. Deployed at ByteDance, ContextCRBench drives a self-evolving code review system, improving performance by 61.98% and demonstrating its robustness and industrial utility. https://github.com/kinesiatricssxilm14/ContextCRBench.

This paper presents Megadiff, a dataset of source code diffs. It focuses on Java, with strict inclusion criteria based on commit message and diff size. Megadiff contains 663 029 Java diffs that can be used for research on commit comprehension, fault localization, automated program repair, and machine learning on code changes.

Reliable handling of code diffs is central to agents that edit and refactor repositories at scale. We introduce Diff-XYZ, a compact benchmark for code-diff understanding with three supervised tasks: apply (old code + diff rightarrow new code), anti-apply (new code - diff rightarrow old code), and diff generation (new code - old code rightarrow diff). Instances in the benchmark are triples langle old code, new code, diff rangle drawn from real commits in CommitPackFT, paired with automatic metrics and a clear evaluation protocol. We use the benchmark to do a focused empirical study of the unified diff format and run a cross-format comparison of different diff representations. Our findings reveal that different formats should be used depending on the use case and model size. For example, representing diffs in search-replace format is good for larger models in the diff generation scenario, yet not suited well for diff analysis and smaller models. The Diff-XYZ benchmark is a reusable foundation for assessing and improving diff handling in LLMs that can aid future development of diff formats and models editing code. The dataset is published on HuggingFace Hub: https://huggingface.co/datasets/JetBrains-Research/diff-xyz.

Reinforcement learning with Verifiable Reward (RLVR) has emerged as a powerful paradigm for training coding agents, where the execution feedback from compilation and tests provides objective verification. However, unlike agent tasks, coding agents face a unique and finer-grained credit assignment challenge: at each step, coding actions simultaneously pack varying changes into different regions of a code version, which makes the contribution of independent change indistinguishable. Existing RLVR methods mostly leverage the outcome reward or step-level reward, which fails to dive into a code diff and makes unique properties of coding actions invisible to training. In this paper, we propose Diff-in-Diff Policy Optimization (DiDPO), a critic-free RL method that constructs fine-grained credit units directly from the structure of code diffs. DiDPO organizes multi-turn coding interactions into multiple thought--action steps and discovers code diffs across sampled trajectories. It then selects anchors by aggregating highly similar sub-diffs split from each whole diff by our ``groupability score'', which provides the splitting schema that optimally balances the semantic scope of anchors and the group mass they may form. Finally these anchors form advantage groups and project the diff-level advantage back to individual response tokens. Experiments on long-horizon coding and reasoning benchmarks show that DiDPO significantly outperforms strong agentic RL baselines. On Qwen2.5-7B-Coder, DiDPO exceeds comparable methods by over 10\% and narrows the gap with far larger models, offering a principled framework for fine-grained credit assignment in coding agent training. We also open-source verl-code, an agentic rl codebase that supports various RL methods and coding benchmarks.

Vision-as-inverse-graphics, the concept of reconstructing an image as an editable graphics program is a long-standing goal of computer vision. Yet even strong VLMs aren't able to achieve this in one-shot as they lack fine-grained spatial and physical grounding capability. Our key insight is that closing this gap requires interleaved multimodal reasoning through iterative execution and verification. Stemming from this, we present VIGA (Vision-as-Inverse-Graphic Agent) that starts from an empty world and reconstructs or edits scenes through a closed-loop write-run-render-compare-revise procedure. To support long-horizon reasoning, VIGA combines (i) a skill library that alternates generator and verifier roles and (ii) an evolving context memory that contains plans, code diffs, and render history. VIGA is task-agnostic as it doesn't require auxiliary modules, covering a wide range of tasks such as 3D reconstruction, multi-step scene editing, 4D physical interaction, and 2D document editing, etc. Empirically, we found VIGA substantially improves one-shot baselines on BlenderGym (35.32%) and SlideBench (117.17%). Moreover, VIGA is also model-agnostic as it doesn't require finetuning, enabling a unified protocol to evaluate heterogeneous foundation VLMs. To better support this protocol, we introduce BlenderBench, a challenging benchmark that stress-tests interleaved multimodal reasoning with graphics engine, where VIGA improves by 124.70%.

We study auto research as a closed empirical loop driven by external measurement. Each submitted trial carries a hypothesis, an executable code edit, an evaluator-owned outcome, and feedback that shapes the next proposal. The output is not a generated paper or a single model checkpoint, but an auditable trajectory of proposals, code diffs, experiments, scores, and failure labels. We instantiate this loop with specialist agents that partition recipe surfaces and share measured lineage across trials. The central empirical finding is that lineage feedback lets agents turn evaluator outcomes, including crashes, budget overruns, size failures, and accuracy-gate misses, into later program-level recipe edits rather than one-shot suggestions. Across 1,197 headline-run trials plus 600 Parameter Golf control trials after one-time setup and launch, humans did not choose proposals, edit recipes, override scores, or repair failed trials during the search. In the three headline runs, the same submitted-trial loop reduces Parameter Golf validation bpb by 0.81%, raises NanoChat-D12 CORE by 38.7%, and reduces CIFAR-10 Airbench96 wallclock by 4.59%, with each task measured by its own external evaluator and legality checks. The trace includes a strict architecture-domain audit of 157 headline-run submissions and program rewrites such as a NanoChat attention-kernel path change. Within this scope the loop autonomously writes code, submits experiments, absorbs feedback, applies and combines known techniques inside each environment, and improves public starting recipes.

AI coding agents increasingly author pull requests (PRs), often under developers' own accounts, obscuring who actually produced a change. Reliable attribution is important for repository governance, empirical studies of AI-assisted software development, and measuring the impact of AI coding agents. Existing work focuses on closed-set identification of known agents, leaving the practical limits of open-world AI coding agent attribution largely unexplored. In this paper, we present AgenTag, a multimodal framework for open-world AI coding agent attribution, evaluated on AIDev, comprising 33,580 PRs from five AI coding agents and 6,618 human-authored PRs. We represent each PR using textual, behavioral, and code-based modalities, and compare conventional classification with supervised contrastive learning for open-set recognition and few-shot enrollment of previously unseen agents. AgenTag identifies authoring agents with a weighted F1 of 0.96 (macro F1 of 0.84), distinguishes AI- from human-authored PRs with a balanced F1 of 0.89, and detects previously unseen agents with an AUC of 0.84. We further show that PR descriptions and commit messages provide nearly all of the attribution signal, whereas code diffs contribute little across multiple representations, indicating that coding agents are distinguished primarily by how they communicate changes rather than by the code they generate. Moreover, these behavioral fingerprints persist after removing explicit self-disclosed markers, demonstrating that attribution relies largely on latent stylistic characteristics. These findings show that reliable attribution of AI coding agents is feasible and clarify the practical trade-offs between attribution accuracy and the information required to achieve it.

Coding agents powered by large language models are increasingly expected to perform realistic software maintenance tasks beyond isolated issue resolution. Existing benchmarks have shifted toward realistic software evolution, but they rarely capture continuous maintenance at the granularity of package releases, where changes are bundled, shipped, and inherited by subsequent versions. We present SWE-Chain, a benchmark for evaluating agents on chained release-level package upgrades, where each transition builds on the agent's prior codebase. To produce upgrade specifications, we design a divide-and-conquer synthesis pipeline that aligns release notes with code diffs for each version transition, ensuring the requirements are grounded in actual code changes, informative to agents, and feasible to implement. SWE-Chain contains 12 upgrade chains across 9 real Python packages, with 155 version transitions and 1,660 grounded upgrade requirements. Across nine frontier agent-model configurations, agents achieve an average of 44.8% resolving, 65.4% precision, and 50.2% F1 under the Build+Fix regime, with Claude-Opus-4.7 (Claude Code) leading at 60.8% resolving, 80.6% precision, and 68.5% F1. These results show that SWE-Chain is both feasible and discriminative, and reveal that current agents still struggle to make correct upgrades across chained package releases without breaking existing functionality.

There are various benchmarks to evaluate bugfixing capabilities of Large Language Models. However, most widespread benchmarks do not fully reflect real-world bugfixing practices. They are small, weakening statistical reliability, and the buggy programs are often similar to one another, potentially distorting evaluation results. The range of bug types can also be narrow, failing to capture a representative range of bugs. To address these issues, we introduce MegaBugFix, a large-scale bugfixing benchmark containing 12,629 buggy Python programs synthesized from correct ones by a Large Language Model. Bug injections were generated as diffs representing code changes. Through this approach, we were able to avoid common pitfalls of LLM-based mutation techniques like injecting overly simplistic bugs or failing to modify the input program. We evaluated 13 open-weight models on MegaBugFix and baseline benchmarks, finding consistently lower performance on MegaBugFix. This reveals that our benchmark presents more challenging bugs and exposes model failures that may remain hidden when evaluating on existing benchmarks. The benchmark and fine-tuned model used for bug injection are available at hf.co/collections/szalontaib/megabugfix.

While many unsupervised learning models focus on one family of tasks, either generative or discriminative, we explore the possibility of a unified representation learner: a model which addresses both families of tasks simultaneously. We identify diffusion models, a state-of-the-art method for generative tasks, as a prime candidate. Such models involve training a U-Net to iteratively predict and remove noise, and the resulting model can synthesize high-fidelity, diverse, novel images. We find that the intermediate feature maps of the U-Net are diverse, discriminative feature representations. We propose a novel attention mechanism for pooling feature maps and further leverage this mechanism as DifFormer, a transformer feature fusion of features from different diffusion U-Net blocks and noise steps. We also develop DifFeed, a novel feedback mechanism tailored to diffusion. We find that diffusion models are better than GANs, and, with our fusion and feedback mechanisms, can compete with state-of-the-art unsupervised image representation learning methods for discriminative tasks - image classification with full and semi-supervision, transfer for fine-grained classification, object detection and segmentation, and semantic segmentation. Our project website (https://mgwillia.github.io/diffssl/) and code (https://github.com/soumik-kanad/diffssl) are available publicly.

Large language models used for code editing can be trained and deployed in at least two output regimes: direct generation, where the model emits the entire modified file in one shot, and iterative diff-based generation ("steps"), where the model emits a sequence of localized search/replace edits applied one at a time until it signals completion or a step budget is exhausted. The diff-based regime is attractive because it mirrors how developers edit code and should require far fewer generated tokens per turn. We train two code models - a 100M-parameter model trained from scratch (Rainbow-Pony-100M) and a fine-tuned Qwen2.5-Coder-0.5B - in both regimes on a shared Flutter/Dart dataset, and evaluate all four resulting models on a held-out set of approx 1,790 tasks per model. Direct generation substantially outperforms diff-based generation on every metric we measure - compilation/static-analysis pass rate, bits-per-byte, character-level similarity to the reference, and blinded LLM-judge ratings of goal fulfillment, correctness, and code quality - and the gap persists after controlling for task difficulty via a matched-ID comparison and when restricting to code that compiles on both sides. We then identify a single, architecture-independent mechanism behind the conditions where diff-based generation does win: it is competitive on short, spatially localized edits, and its category-level wins concentrate in exactly the two task categories - refactoring and error-handling/edge-case fixes - with the lowest mean edit-step count in our dataset. We term this task locality and discuss its implications for when an edit-based training regime is and is not the right choice for a code-editing model.

Diffusion-based super-resolution (SR) models have recently garnered significant attention due to their potent restoration capabilities. But conventional diffusion models perform noise sampling from a single distribution, constraining their ability to handle real-world scenes and complex textures across semantic regions. With the success of segment anything model (SAM), generating sufficiently fine-grained region masks can enhance the detail recovery of diffusion-based SR model. However, directly integrating SAM into SR models will result in much higher computational cost. In this paper, we propose the SAM-DiffSR model, which can utilize the fine-grained structure information from SAM in the process of sampling noise to improve the image quality without additional computational cost during inference. In the process of training, we encode structural position information into the segmentation mask from SAM. Then the encoded mask is integrated into the forward diffusion process by modulating it to the sampled noise. This adjustment allows us to independently adapt the noise mean within each corresponding segmentation area. The diffusion model is trained to estimate this modulated noise. Crucially, our proposed framework does NOT change the reverse diffusion process and does NOT require SAM at inference. Experimental results demonstrate the effectiveness of our proposed method, showcasing superior performance in suppressing artifacts, and surpassing existing diffusion-based methods by 0.74 dB at the maximum in terms of PSNR on DIV2K dataset. The code and dataset are available at https://github.com/lose4578/SAM-DiffSR.

Diffusion-based approaches have recently achieved strong results in face swapping, offering improved visual quality over traditional GAN-based methods. However, even state-of-the-art models often suffer from fine-grained artifacts and poor identity preservation, particularly under challenging poses and expressions. A key limitation of existing approaches is their failure to meaningfully leverage 3D facial structure, which is crucial for disentangling identity from pose and expression. In this work, we propose DiffSwap++, a novel diffusion-based face-swapping pipeline that incorporates 3D facial latent features during training. By guiding the generation process with 3D-aware representations, our method enhances geometric consistency and improves the disentanglement of facial identity from appearance attributes. We further design a diffusion architecture that conditions the denoising process on both identity embeddings and facial landmarks, enabling high-fidelity and identity-preserving face swaps. Extensive experiments on CelebA, FFHQ, and CelebV-Text demonstrate that DiffSwap++ outperforms prior methods in preserving source identity while maintaining target pose and expression. Additionally, we introduce a biometric-style evaluation and conduct a user study to further validate the realism and effectiveness of our approach. Code will be made publicly available at https://github.com/WestonBond/DiffSwapPP

Diffusion-based models have shown strong performance in video super-resolution (VSR) and video frame interpolation (VFI). However, their role in the coupled space-time video super-resolution (STVSR) setting remains limited. Existing diffusion-based STVSR approaches suffer from two issues: (1) low inference efficiency and (2) insufficient utilization of spatiotemporal information. These limitations impede deployment. To address these issues, we introduce DiffST, an efficient spatiotemporal-aware video diffusion framework for real-world STVSR. To improve efficiency, we adapt a pre-trained diffusion model for one-step sampling and process the entire video directly rather than operating on individual frames. Furthermore, to enhance spatiotemporal information utilization, we introduce cross-frame context aggregation (CFCA) and video representation guidance (VRG). The CFCA module aggregates information across multiple keyframes to produce intermediate frames. The VRG module extracts video-level global features to guide the diffusion process. Extensive experiments show that DiffST obtains leading results on real-world STVSR tasks. It also maintains high inference efficiency, running about 17times faster than previous diffusion-based STVSR methods. Code is available at: https://github.com/zhengchen1999/DiffST.

Vision-language models (VLMs) have made strong progress on high-level image-text alignment, yet their ability to perceive subtle visual differences remains limited. We study this problem in rendered web interfaces, where localized visual changes are both a diagnostic test of fine-grained perception and a practical requirement for GUI agents and design tools. We introduce DiffSpot, a code-driven benchmark for open-ended spot-the-difference on web interfaces. DiffSpot constructs controlled image pairs by mutating a single CSS property of a target element in self-contained HTML, re-rendering the page, and recording the changed property, element, and mutation magnitude. A grounding gate retains only pairs whose rendered pixel difference is confined to the target element. The benchmark contains 4{,}400 pairs, including 3{,}900 has-diff pairs balanced across 13 CSS-property operators and three difficulty tiers, plus 500 no-diff pairs for hallucination control. Evaluating 13 frontier VLMs zero-shot, we find that even the best model identifies only 40.7% of true changes, with Hard-tier Recall below 23% for every model. DiffSpot further shows that difficulty is strongly property-dependent: across CSS operators, neither pixel magnitude nor CLIP distance reliably predicts Recall.

Repository-level code editing requires models to understand complex dependencies and execute precise multi-file modifications across a large codebase. While recent gains on SWE-bench rely heavily on complex agent scaffolding, it remains unclear how much of this capability can be internalised via high-quality training signals. To address this, we propose Clean Pull Request (Clean-PR), a mid-training paradigm that leverages real-world GitHub pull requests as a training signal for repository-level editing. We introduce a scalable pipeline that converts noisy pull request diffs into Search/Replace edit blocks through reconstruction and validation, resulting in the largest publicly available corpus of 2 million pull requests spanning 12 programming languages. Using this training signal, we perform a mid-training stage followed by an agentless-aligned supervised fine-tuning process with error-driven data augmentation. On SWE-bench, our model significantly outperforms the instruction-tuned baseline, achieving absolute improvements of 13.6% on SWE-bench Lite and 12.3% on SWE-bench Verified. These results demonstrate that repository-level code understanding and editing capabilities can be effectively internalised into model weights under a simplified, agentless protocol, without relying on heavy inference-time scaffolding.

Software engineers mainly write code by editing existing programs. In contrast, large language models (LLMs) autoregressively synthesize programs in a single pass. One explanation for this is the scarcity of open-sourced edit data. While high-quality instruction data for code synthesis is already scarce, high-quality edit data is even scarcer. To fill this gap, we develop a synthetic data generation algorithm called LintSeq. This algorithm refactors existing code into a sequence of code edits by using a linter to procedurally sample across the error-free insertions that can be used to sequentially write programs. It outputs edit sequences as text strings consisting of consecutive program diffs. To test LintSeq, we use it to refactor a dataset of instruction + program pairs into instruction + program-diff-sequence tuples. Then, we instruction finetune a series of smaller LLMs ranging from 2.6B to 14B parameters on both the re-factored and original versions of this dataset, comparing zero-shot performance on code synthesis benchmarks. We show that during repeated sampling, edit sequence finetuned models produce more diverse programs than baselines. This results in better inference-time scaling for benchmark coverage as a function of samples, i.e. the fraction of problems "pass@k" solved by any attempt given "k" tries. For example, on HumanEval pass@50, small LLMs finetuned on synthetic edit sequences are competitive with GPT-4 and outperform models finetuned on the baseline dataset by +20% (+/-3%) in absolute score. Finally, we also pretrain our own tiny LMs for code understanding. We show that finetuning tiny models on synthetic code edits results in state-of-the-art code synthesis for the on-device model class. Our 150M parameter edit sequence LM matches or outperforms code models with twice as many parameters, both with and without repeated sampling, including Codex and AlphaCode.

Code evolution is inevitable in modern software development. Changes to third-party APIs frequently break existing code and complicate maintenance, posing practical challenges for developers. While large language models (LLMs) have shown promise in code generation, they struggle to reason without a structured representation of these evolving relationships, often leading them to produce outdated APIs or invalid outputs. In this work, we propose a knowledge graph-augmented framework that decomposes the migration task into two synergistic stages: evolution path retrieval and path-informed code generation. Our approach constructs static and dynamic API graphs to model intra-version structures and cross-version transitions, enabling structured reasoning over API evolution. Both modules are trained with synthetic supervision automatically derived from real-world API diffs, ensuring scalability and minimal human effort. Extensive experiments across single-package and multi-package benchmarks demonstrate that our framework significantly improves migration accuracy, controllability, and execution success over standard LLM baselines. The source code and datasets are available at: https://github.com/kangjz1203/KCoEvo.

Code editing plays a vital role in software engineering, requiring developers to adjust existing code according to natural language instructions while keeping functionality intact and avoiding unnecessary modifications. However, commit-based datasets commonly used for this task are often noisy, lack diversity, and fail to reflect the style of real-world edit instructions. To address this, we introduce CanItEdit, an open-source pipeline that leverages multiple LLMs to synthesize realistic code-edit triplets. The pipeline produces both concise "lazy" instructions and more detailed "descriptive" ones, and applies filtering based on diffs and topics to guarantee data quality and variety. Using this process, we construct OCEDataFT, a curated dataset of 20K samples. Fine-tuning three advanced base models on OCEDataFT leads to significant performance boosts on the CanItEdit benchmark, with relative pass@1 improvements ranging from 4.50% to 20.79%. Notably, the resulting models achieve performance close to closed-source systems, narrowing the gap to GPT-4 to just 3.54%, without relying on proprietary resources or manual annotation.

AI coding agents are increasingly acting as autonomous contributors by generating and submitting pull requests (PRs). However, we lack empirical evidence on how these agent-generated PRs differ from human contributions, particularly in how they modify code and describe their changes. Understanding these differences is essential for assessing their reliability and impact on development workflows. Using the MSR 2026 Mining Challenge version of the AIDev dataset, we analyze 24,014 merged Agentic PRs (440,295 commits) and 5,081 merged Human PRs (23,242 commits). We examine additions, deletions, commits, and files touched, and evaluate the consistency between PR descriptions and their diffs using lexical and semantic similarity. Agentic PRs differ substantially from Human PRs in commit count (Cliff's δ= 0.5429) and show moderate differences in files touched and deleted lines. They also exhibit slightly higher description-to-diff similarity across all measures. These findings provide a large-scale empirical characterization of how AI coding agents contribute to open source development.

Behavioral Co-Versioning remains absent from mainstream practice: while developers routinely version source code with Git, they rarely persist and query how run-time behavior evolves across revisions. This paper argues that this mismatch contributes to a blind spot in software evolution analysis and CI, where rich execution information is discarded and typically reduced to pass/fail outcomes -- despite partial test oracles, flakiness, and silent output or performance drift. We propose Behavioral Co-Versioning, a paradigm that couples the Git history with a Behavioral Archive: an append-only, queryable store of selected run-time observations (e.g., method I/O and performance signals) collected during test runs and keyed by commit and test context. This enables semantic diffing, behavior-aware regression localization, and retrospective auditing by querying historical executions, complementing proactive, signal-specific monitoring tools. We first outline a minimal data model and change diagnostics based on code/test/behavior fingerprints, and then demonstrate feasibility with a laptop-scale prototype that replays historical commits of a Python project, archives run-time observations in a local Parquet-backed store, and detects behavioral changes not apparent from textual diffs.

Just-in-Time software defect prediction (JIT-SDP) plays a critical role in prioritizing risky code changes during code review and continuous integration. However, existing datasets often suffer from noisy labels and low precision in identifying bug-inducing commits. To address this, we present ReDef (Revert-based Defect dataset), a high-confidence benchmark of function-level modifications curated from 22 large-scale C/C++ projects. Defective cases are anchored by revert commits, while clean cases are validated through post-hoc history checks. Ambiguous instances are conservatively filtered out via a GPT-assisted triage process involving multiple votes and audits. This pipeline yields 3,164 defective and 10,268 clean modifications, offering substantially more reliable labels than prior resources. Beyond dataset construction, we provide a systematic evaluation of how Code Language Models (CLMs)-specifically CodeBERT, CodeT5+, UniXcoder, and Qwen2.5-reason about code modifications. We first investigate which input encodings most effectively expose change information under five different strategies. We then design four counterfactual perturbation strategies (e.g., swapping added/deleted blocks, inverting diff polarity) to serve as diagnostic probes. We posit that if models genuinely capture change semantics, such distortions should lead to a clear decline in predictive performance. Our results show that compact diff-style encodings consistently outperform whole-function formats across all CLMs, supported by rigorous statistical confirmation. However, under counterfactual tests, performance remains effectively stable, revealing that what appears to be robustness in fact reflects a reliance on superficial cues rather than true semantic understanding.

Advanced diffusion models (DMs) perform impressively in image super-resolution (SR), but the high memory and computational costs hinder their deployment. Binarization, an ultra-compression algorithm, offers the potential for effectively accelerating DMs. Nonetheless, due to the model structure and the multi-step iterative attribute of DMs, existing binarization methods result in significant performance degradation. In this paper, we introduce a novel binarized diffusion model, BI-DiffSR, for image SR. First, for the model structure, we design a UNet architecture optimized for binarization. We propose the consistent-pixel-downsample (CP-Down) and consistent-pixel-upsample (CP-Up) to maintain dimension consistent and facilitate the full-precision information transfer. Meanwhile, we design the channel-shuffle-fusion (CS-Fusion) to enhance feature fusion in skip connection. Second, for the activation difference across timestep, we design the timestep-aware redistribution (TaR) and activation function (TaA). The TaR and TaA dynamically adjust the distribution of activations based on different timesteps, improving the flexibility and representation alability of the binarized module. Comprehensive experiments demonstrate that our BI-DiffSR outperforms existing binarization methods. Code is released at: https://github.com/zhengchen1999/BI-DiffSR.

VIBETENSOR is an open-source research system software stack for deep learning, generated by LLM-powered coding agents under high-level human guidance. In this paper, "fully generated" refers to code provenance: implementation changes were produced and applied as agent-proposed diffs; validation relied on agent-run builds, tests, and differential checks, without per-change manual diff review. It implements a PyTorch-style eager tensor library with a C++20 core (CPU+CUDA), a torch-like Python overlay via nanobind, and an experimental Node.js/TypeScript interface. Unlike thin bindings, VIBETENSOR includes its own tensor/storage system, schema-lite dispatcher, reverse-mode autograd, CUDA runtime (streams/events/graphs), a stream-ordered caching allocator with diagnostics, and a stable C ABI for dynamically loaded operator plugins. We view this release as a milestone for AI-assisted software engineering: it shows coding agents can generate a coherent deep learning runtime spanning language bindings down to CUDA memory management, validated primarily by builds and tests. We describe the architecture, summarize the workflow used to produce and validate the system, and evaluate the artifact. We report repository scale and test-suite composition, and summarize reproducible microbenchmarks from an accompanying AI-generated kernel suite, including fused attention versus PyTorch SDPA/FlashAttention. We also report end-to-end training sanity checks on 3 small workloads (sequence reversal, ViT, miniGPT) on NVIDIA H100 (Hopper, SM90) and Blackwell-class GPUs; multi-GPU results are Blackwell-only and use an optional CUTLASS-based ring-allreduce plugin gated on CUDA 13+ and sm103a toolchain support. Finally, we discuss failure modes in generated system software, including a "Frankenstein" composition effect where locally correct subsystems interact to yield globally suboptimal performance.

Developers often dedicate significant time to maintaining and refactoring existing code. However, most prior work on generative models for code focuses solely on creating new code, overlooking the distinctive needs of editing existing code. In this work, we explore a multi-round code auto-editing setting, aiming to predict edits to a code region based on recent changes within the same codebase. Our model, Coeditor, is a fine-tuned language model specifically designed for code editing tasks. We represent code changes using a line diff format and employ static analysis to form large customized model contexts, ensuring the availability of appropriate information for prediction. We collect a code editing dataset from the commit histories of 1650 open-source Python projects for training and evaluation. In a simplified single-round, single-edit task, Coeditor significantly outperforms GPT-3.5 and SOTA open-source code completion models (bringing exact-match accuracy from 34.7 up to 60.4), demonstrating the benefits of incorporating editing history for code completion. In a multi-round, multi-edit setting, we observe substantial gains by iteratively conditioning on additional user edits. We have open-sourced our code, data, and model weights to encourage future research and have released a VSCode extension powered by our model for interactive IDE usage.

We study the problem of (learning) algorithm comparison, where the goal is to find differences between models trained with two different learning algorithms. We begin by formalizing this goal as one of finding distinguishing feature transformations, i.e., input transformations that change the predictions of models trained with one learning algorithm but not the other. We then present ModelDiff, a method that leverages the datamodels framework (Ilyas et al., 2022) to compare learning algorithms based on how they use their training data. We demonstrate ModelDiff through three case studies, comparing models trained with/without data augmentation, with/without pre-training, and with different SGD hyperparameters. Our code is available at https://github.com/MadryLab/modeldiff .

Detecting code clones is relevant to software maintenance and code refactoring. This challenge still presents unresolved cases, mainly when structural similarity does not reflect functional equivalence, though recent code models show promise. Therefore, this research aims to systematically measure the performance of several newly introduced small code models in classifying code pairs as clones or non-clones. The evaluation is based on five datasets: BigCloneBench, CodeJam, Karnalim, POJ104, and PoolC, as well as six code models: CodeBERT, GraphCodeBERT, Salesforce T5, UniXCoder, PLBART, and Polycoder. Most models performed well across standard metrics, including accuracy, precision, recall, and F1-score. However, a marginal fraction of clones remains challenging to detect, especially when the code looks similar but performs different operations. The source code that illustrates our approach is available at: https://github.com/jorge-martinez-gil/small-code-models

Diffusion large language models (dLLMs) are appealing for code generation because they can update many tokens in parallel, yet many are optimized for sequence synthesis rather than edit prediction. This setting is poorly matched to modern AI-assisted IDEs, where edit prediction must infer the next code change from recent edits, the current file, and cursor-local context. Such changes are usually sparse and preserve most source tokens, so regenerating a full code segment wastes computation. We propose Diff Diffusion, a diffusion-inspired LLM framework for code editing that predicts edit paths from an original snippet to its revised form. Diff Diffusion represents denoising as structured edit operations, and combines this formulation with multi-stage training and efficient parallel decoding. By focusing computation on changed regions, Diff Diffusion supports accurate low-latency edits and multi-position parallel modification. Across public edit-completion benchmarks, edit-prediction evaluations, and online validation, Diff Diffusion matches or leads autoregressive baselines while delivering 2.78 times faster inference on public edit-completion benchmarks and a 39.0% P50 model-latency reduction in production. This work provides a new modeling perspective for AI applications that require high accuracy and low latency.

The integration of AI agents as coding assistants into software development has raised questions about the long-term viability of AI agent-generated code. A prevailing hypothesis within the software engineering community suggests this code is "disposable", meaning it is merged quickly but discarded shortly thereafter. If true, organizations risk shifting maintenance burden from generation to post-deployment remediation. We investigate this hypothesis through survival analysis of 201 open-source projects, tracking over 200,000 code units authored by AI agents versus humans. Contrary to the disposable code narrative, agent-authored code survives significantly longer: at the line level, it exhibits a 15.8 percentage-point lower modification rate and 16% lower hazard of modification (HR = 0.842, p < 0.001). However, modification profiles differ. Agent-authored code shows modestly elevated corrective rates (26.3% vs. 23.0%), while human code shows higher adaptive rates. However, the effect sizes are small (Cramér's V = 0.116), and per-agent variation exceeds the agent-human gap. Turning to prediction, textual features can identify modification-prone code (AUC-ROC = 0.671), but predicting when modifications occur remains challenging (Macro F1 = 0.285), suggesting timing depends on external organizational dynamics. The bottleneck for agent-generated code may not be generation quality, but the organizational practices that govern its long-term evolution.

We present Code Comparison Tuning (CCT), a simple and effective tuning method for code large language models (Code LLMs) to better handle subtle code errors. Specifically, we integrate the concept of comparison into instruction tuning, both at the token and sequence levels, enabling the model to discern even the slightest deviations in code. To compare the original code with an erroneous version containing manually added code errors, we use token-level preference loss for detailed token-level comparisons. Additionally, we combine code segments to create a new instruction tuning sample for sequence-level comparisons, enhancing the model's bug-fixing capability. Experimental results on the HumanEvalFix benchmark show that CCT surpasses instruction tuning in pass@1 scores by up to 4 points across diverse code LLMs, and extensive analysis demonstrates the effectiveness of our method.

Code pre-trained models have shown promising effectiveness in various software engineering tasks. Among these tasks, many tasks are related to software evolution and/or code editing. However, existing code pre-trained models often overlook the real-world code editing data and the evolutionary nature of the editing process. In this paper, to simulate the step-by-step code editing process of human developers, we propose DivoT5, a pre-trained model based on directional diffusion at the data level. In DivoT5, we adopt two categories of pre-training tasks. The first category is mask and denoising tasks augmented with a diffusion direction representing code evolution. That is, we first apply a noising process to the code snippets before evolution, and then ask the pre-training process to restore the snippets with noise into the code snippets after evolution. The second category is tasks aiming to reinforce the evolutionary direction. That is, we first generate various intermediate versions for each pair of snippets before and after evolution, and then ask the pre-training process to transform the intermediate versions into the snippet after evolution for each pair. We evaluate DivoT5 for two code-editing scenarios and one non-editing scenario using five downstream tasks. Given each downstream task, we fine-tune the pre-trained DivoT5 to evaluate its effectiveness. Our experimental results show that DivoT5 achieves state-of-the-art (SOTA) performance on most tasks in comparison to models of the same scale (220M), large scale (770M) models in fine-tuning, and billion-scale (6.7B, 8B, ChatGPT) models in few-shot settings. For one code-editing task (i.e., automated code review), DivoT5 pre-trained on top of CodeT5-small (60M) can even outperform CodeT5-base (220M) and other pre-trained models with 220M parameters except for DivoT5 pre-trained on top of CodeT5-base (220M).

This paper revisits recent code similarity evaluation metrics, particularly focusing on the application of Abstract Syntax Tree (AST) editing distance in diverse programming languages. In particular, we explore the usefulness of these metrics and compare them to traditional sequence similarity metrics. Our experiments showcase the effectiveness of AST editing distance in capturing intricate code structures, revealing a high correlation with established metrics. Furthermore, we explore the strengths and weaknesses of AST editing distance and prompt-based GPT similarity scores in comparison to BLEU score, execution match, and Jaccard Similarity. We propose, optimize, and publish an adaptable metric that demonstrates effectiveness across all tested languages, representing an enhanced version of Tree Similarity of Edit Distance (TSED).

In computer vision, Image Difference Captioning (IDC) is crucial for accurately describing variations between closely related images. Traditional IDC methods often rely on specialist models, which restrict their applicability across varied contexts. This paper introduces the OneDiff model, a novel generalist approach that utilizes a robust vision-language model architecture, integrating a siamese image encoder with a Visual Delta Module. This innovative configuration allows for the precise detection and articulation of fine-grained differences between image pairs. OneDiff is trained through a dual-phase strategy, encompassing Coupled Sample Training and multi-task learning across a diverse array of data types, supported by our newly developed DiffCap Dataset. This dataset merges real-world and synthetic data, enhancing the training process and bolstering the model's robustness. Extensive testing on diverse IDC benchmarks, such as Spot-the-Diff, Image-Editing-Request, and Birds-to-Words, shows that OneDiff consistently outperforms existing state-of-the-art models in accuracy and adaptability, achieving improvements of up to 97% CIDEr points in average. By setting a new benchmark in IDC, OneDiff paves the way for more versatile and effective applications in detecting and describing visual differences. The code, models, and data will be made publicly available.

Code clones are pairs of code snippets that implement similar functionality. Clone detection is a fundamental branch of automatic source code comprehension, having many applications in refactoring recommendation, plagiarism detection, and code summarization. A particularly interesting case of clone detection is the detection of semantic clones, i.e., code snippets that have the same functionality but significantly differ in implementation. A promising approach to detecting semantic clones is contrastive learning (CL), a machine learning paradigm popular in computer vision but not yet commonly adopted for code processing. Our work aims to evaluate the most popular CL algorithms combined with three source code representations on two tasks. The first task is code clone detection, which we evaluate on the POJ-104 dataset containing implementations of 104 algorithms. The second task is plagiarism detection. To evaluate the models on this task, we introduce CodeTransformator, a tool for transforming source code. We use it to create a dataset that mimics plagiarised code based on competitive programming solutions. We trained nine models for both tasks and compared them with six existing approaches, including traditional tools and modern pre-trained neural models. The results of our evaluation show that proposed models perform diversely in each task, however the performance of the graph-based models is generally above the others. Among CL algorithms, SimCLR and SwAV lead to better results, while Moco is the most robust approach. Our code and trained models are available at https://doi.org/10.5281/zenodo.6360627, https://doi.org/10.5281/zenodo.5596345.

We present Agent-Diff, a novel benchmarking framework for evaluating agentic Large Language Models (LLMs) on real-world tasks that execute code via external APIs. Agentic LLM performance varies due to differences in models, external tool access, prompt structures, and agentic frameworks. Benchmarks must make fundamental trade-offs between a sandboxed approach that controls for variation in software environments and more ecologically valid approaches employing real services. Agent-Diff attempts to capture the desirable features of both of these approaches by including access to the real API interfaces for software services while sandboxing the environment in which calls are made, processed, and evaluated. This approach relies on two key innovations. The first is a novel state-diff contract, which separates process from outcome - rather than fuzzy trace or parameter matching, we define task success as whether the expected change in environment state was achieved. The second is a novel sandbox that provides a standardized scripting layer that all models use to execute code against external APIs (Slack, Box, Linear, Google Calendar). Thus, we can evaluate different agentic LLMs against a standardized set of contracts using a unified sandbox while still evaluating their performance on real-world service interfaces. Using the Agent-Diff framework, we provide benchmarks for nine LLMs across 224 tasks utilizing enterprise software workflows. In addition, we evaluate the robustness of the framework with ablation experiments to assess the contribution of access to API documentation on benchmark performance. Code and data: https://github.com/agent-diff-bench/agent-diff.

Code search is an important task that has seen many developments in recent years. However, previous attempts have mostly considered the problem of searching for code by a text query. We argue that using a code snippet (and possibly an associated traceback) as a query and looking for answers with bugfixing instructions and code samples is a natural use case that is not covered by existing approaches. Moreover, existing datasets use comments extracted from code rather than full-text descriptions as text, making them unsuitable for this use case. We present a new SearchBySnippet dataset implementing the search-by-code use case based on StackOverflow data; it turns out that in this setting, existing architectures fall short of the simplest BM25 baseline even after fine-tuning. We present a new single encoder model SnippeR that outperforms several strong baselines on the SearchBySnippet dataset with a result of 0.451 Recall@10; we propose the SearchBySnippet dataset and SnippeR as a new important benchmark for code search evaluation.

Screenshot-to-code generation aims to translate user interface screenshots into executable frontend code that faithfully reproduces the target layout and style. Existing multimodal large language models perform this mapping directly from screenshots but are trained without observing the visual outcomes of their generated code. In contrast, human developers iteratively render their implementation, compare it with the design, and learn how visual differences relate to code changes. Inspired by this process, we propose VisRefiner, a training framework that enables models to learn from visual differences between rendered predictions and reference designs. We construct difference-aligned supervision that associates visual discrepancies with corresponding code edits, allowing the model to understand how appearance variations arise from implementation changes. Building on this, we introduce a reinforcement learning stage for self-refinement, where the model improves its generated code by observing both the rendered output and the target design, identifying their visual differences, and updating the code accordingly. Experiments show that VisRefiner substantially improves single-step generation quality and layout fidelity, while also endowing models with strong self-refinement ability. These results demonstrate the effectiveness of learning from visual differences for advancing screenshot-to-code generation.

Code embeddings are essential for semantic code search; however, current approaches often struggle to capture the precise syntactic and contextual nuances inherent in code. Open-source models such as CodeBERT and UniXcoder exhibit limitations in scalability and efficiency, while high-performing proprietary systems impose substantial computational costs. We introduce a parameter-efficient fine-tuning method based on Low-Rank Adaptation (LoRA) to construct task-specific adapters for code retrieval. Our approach reduces the number of trainable parameters to less than two percent of the base model, enabling rapid fine-tuning on extensive code corpora (2 million samples in 25 minutes on two H100 GPUs). Experiments demonstrate an increase of up to 9.1% in Mean Reciprocal Rank (MRR) for Code2Code search, and up to 86.69% for Text2Code search tasks across multiple programming languages. Distinction in task-wise and language-wise adaptation helps explore the sensitivity of code retrieval for syntactical and linguistic variations.

This paper presents a new approach for code similarity on High Level programs. Our technique is based on Fast Dynamic Time Warping, that builds a warp path or points relation with local restrictions. The source code is represented into Time Series using the operators inside programming languages that makes possible the comparison. This makes possible subsequence detection that represent similar code instructions. In contrast with other code similarity algorithms, we do not make features extraction. The experiments show that two source codes are similar when their respective Time Series are similar.

State-of-the-art large language models (LLMs) have demonstrated impressive code generation capabilities but struggle with real-world software engineering tasks, such as revising source code to address code reviews, hindering their practical use. Code review comments are often implicit, ambiguous, and colloquial, requiring models to grasp both code and human intent. This challenge calls for evaluating large language models' ability to bridge both technical and conversational contexts. While existing work has employed the automated code refinement (ACR) task to resolve these comments, current evaluation methods fall short, relying on text matching metrics that provide limited insight into model failures and remain susceptible to training data contamination. To address these limitations, we introduce a novel evaluation benchmark, CodeReviewQA that enables us to conduct fine-grained assessment of model capabilities and mitigate data contamination risks. In CodeReviewQA, we decompose the generation task of code refinement into three essential reasoning steps: change type recognition (CTR), change localisation (CL), and solution identification (SI). Each step is reformulated as multiple-choice questions with varied difficulty levels, enabling precise assessment of model capabilities, while mitigating data contamination risks. Our comprehensive evaluation spans 72 recently released large language models on 900 manually curated, high-quality examples across nine programming languages. Our results show that CodeReviewQA is able to expose specific model weaknesses in code review comprehension, disentangled from their generative automated code refinement results.

With the growing use of large language models(LLMs) as evaluators, their application has expanded to code evaluation tasks, where they assess the correctness of generated code without relying on reference implementations. While this offers scalability and flexibility, it also raises a critical, unresolved question: Can LLM judges fairly and robustly evaluate semantically equivalent code with superficial variations? Functionally correct code often exhibits variations-such as differences in variable names, comments, or formatting-that should not influence its correctness. Yet, whether LLM judges can reliably handle these variations remains unclear. We present the first comprehensive study of this issue, defining six types of potential bias in code evaluation and revealing their systematic impact on LLM judges. Across five programming languages and multiple LLMs, we empirically demonstrate that all tested LLM judges are susceptible to both positive and negative biases, resulting in inflated or unfairly low scores. Moreover, we observe that LLM judges remain vulnerable to these biases even when prompted to generate test cases before scoring, highlighting the need for more robust code evaluation methods.

Large language models (LLMs) for code completion may generate deprecated APIs because their pre-training corpora contain code from historical library versions. Existing approaches use inference-time intervention, model editing, or machine unlearning, but multiple plausible completions make predefined replacements restrictive. Moreover, existing studies rarely verify whether models exhibit the targeted deprecated behavior or evaluate unintended changes to other APIs. We conduct a systematic empirical study of machine unlearning for deprecated API knowledge and construct MUDAPIBench, a behavior-grounded benchmark with over 7,000 model-specific instances derived from 145 deprecated-to-up-to-date API mappings across eight Python libraries. Instances are retained only when the original model generates the target deprecated API. We evaluate eight representative unlearning methods across three code LLMs on deprecated API forgetting, up-to-date API generation, preservation of other and unrelated API behaviors, general code-generation capability, and efficiency. Results show that Gradient Difference (GD) provides the best overall trade-off, suppressing deprecated APIs while preserving other capabilities with moderate computational costs. Further analyses reveal substantial variation across libraries and show that APIs deprecated after the model's training-data cutoff are harder to forget. Layer-wise analyses indicate that GD achieves effective forgetting with comparatively controlled internal changes.

Code diffusion models generate code by iteratively removing noise from the latent representation of a code snippet. During later steps of the diffusion process, when the code snippet has almost converged, differences between discrete representations of these snippets look like last-mile repairs applied to broken or incomplete code. We evaluate the extent to which this resemblance can be exploited to leverage pre-trained code diffusion models for the problem of last-mile repair by considering two applications with significant potential. First, we can leverage the diffusion model for last-mile repair by adding noise to a broken code snippet and resuming the diffusion process. Second, we can leverage the diffusion model to generate arbitrary amount of training data for last-mile repair tasks (that are computationally more efficient) by sampling an intermediate program (input) and the final program (output) from the diffusion process. We perform experiments on 3 domains (Python, Excel and PowerShell) to evaluate applications, as well as analyze properties.

Large language models (LLMs) for code rely on subword tokenizers, such as byte-pair encoding (BPE), learned from mixed natural language text and programming language code but driven by statistics rather than grammar. As a result, semantically identical code snippets can be tokenized differently depending on superficial factors such as whitespace or identifier naming. To measure the impact of this misalignment, we introduce TokDrift, a framework that applies semantic-preserving rewrite rules to create code variants differing only in tokenization. Across nine code LLMs, including large ones with over 30B parameters, even minor formatting changes can cause substantial shifts in model behavior. Layer-wise analysis shows that the issue originates in early embeddings, where subword segmentation fails to capture grammar token boundaries. Our findings identify misaligned tokenization as a hidden obstacle to reliable code understanding and generation, highlighting the need for grammar-aware tokenization for future code LLMs.

It is essential to detect functional differences in various software engineering tasks, such as automated program repair, mutation testing, and code refactoring. The problem of detecting functional differences between two programs can be reduced to searching for a difference exposing test (DET): a test input that results in different outputs on the subject programs. In this paper, we propose Mokav, a novel execution-driven tool that leverages LLMs to generate DETs. Mokav takes two versions of a program (P and Q) and an example test input. When successful, Mokav generates a valid DET, a test input that leads to different outputs on P and Q. Mokav iteratively prompts an LLM with a specialized prompt to generate new test inputs. At each iteration, Mokav provides execution-based feedback regarding previously generated tests until the LLM produces a DET. We evaluate Mokav on 1,535 pairs of Python programs collected from the Codeforces competition platform and 32 pairs of programs from the QuixBugs dataset. Our experiments show that Mokav outperforms the state-of-the-art, Pynguin and Differential Prompting, by a large margin. Mokav can generate DETs for 81.7% (1,255/1,535) of the program pairs in our benchmark (versus 4.9% for Pynguin and 37.3% for Differential Prompting). We demonstrate that all components in our system, including the iterative and execution-driven approaches, contribute to its high effectiveness.

In code search, the Generation-Augmented Retrieval (GAR) framework, which generates exemplar code snippets to augment queries, has emerged as a promising strategy to address the principal challenge of modality misalignment between code snippets and natural language queries, particularly with the demonstrated code generation capabilities of Large Language Models (LLMs). Nevertheless, our preliminary investigations indicate that the improvements conferred by such an LLM-augmented framework are somewhat constrained. This limitation could potentially be ascribed to the fact that the generated codes, albeit functionally accurate, frequently display a pronounced stylistic deviation from the ground truth code in the codebase. In this paper, we extend the foundational GAR framework and propose a simple yet effective method that additionally Rewrites the Code (ReCo) within the codebase for style normalization. Experimental results demonstrate that ReCo significantly boosts retrieval accuracy across sparse (up to 35.7%), zero-shot dense (up to 27.6%), and fine-tuned dense (up to 23.6%) retrieval settings in diverse search scenarios. To further elucidate the advantages of ReCo and stimulate research in code style normalization, we introduce Code Style Similarity, the first metric tailored to quantify stylistic similarities in code. Notably, our empirical findings reveal the inadequacy of existing metrics in capturing stylistic nuances.

Context: Code reviews are crucial for software quality. Recent AI advances have allowed large language models (LLMs) to review and fix code; now, there are tools that perform these reviews. However, their reliability and accuracy have not yet been systematically evaluated. Objective: This study compares different LLMs' performance in detecting code correctness and suggesting improvements. Method: We tested GPT4o and Gemini 2.0 Flash on 492 AI generated code blocks of varying correctness, along with 164 canonical code blocks from the HumanEval benchmark. To simulate the code review task objectively, we expected LLMs to assess code correctness and improve the code if needed. We ran experiments with different configurations and reported on the results. Results: With problem descriptions, GPT4o and Gemini 2.0 Flash correctly classified code correctness 68.50% and 63.89% of the time, respectively, and corrected the code 67.83% and 54.26% of the time for the 492 code blocks of varying correctness. Without problem descriptions, performance declined. The results for the 164 canonical code blocks differed, suggesting that performance depends on the type of code. Conclusion: LLM code reviews can help suggest improvements and assess correctness, but there is a risk of faulty outputs. We propose a process that involves humans, called the "Human in the loop LLM Code Review" to promote knowledge sharing while mitigating the risk of faulty outputs.

Inconsistent modifications to code clones can lead to software defects. Many approaches exist to support consistent modifications based on clone detection and/or change pattern extraction. However, no tool currently supports synchronization of code clones across diverse programming languages and development environments. We propose ICCheck, a tool designed to be language-agnostic and portable across various environments. By leveraging an existing language-agnostic clone search technique and limiting the tool's external dependency to an existing Git repository, we developed a tool that can assist in synchronizing code clones in diverse environments. We validated the tool's functionality in multiple open-source repositories, where ICCheck was able to detect overlooked clone modifications in over 30 programming and domain-specific languages and delivered interactive suggestions within a median of 0.27 seconds in editor environments, demonstrating its language independence and responsiveness. Furthermore, by supporting the Language Server Protocol, we confirmed that ICCheck can be integrated into multiple development environments with minimal effort. ICCheck is available at https://github.com/salab/iccheck

Software engineering activities such as package migration, fixing errors reports from static analysis or testing, and adding type annotations or other specifications to a codebase, involve pervasively editing the entire repository of code. We formulate these activities as repository-level coding tasks. Recent tools like GitHub Copilot, which are powered by Large Language Models (LLMs), have succeeded in offering high-quality solutions to localized coding problems. Repository-level coding tasks are more involved and cannot be solved directly using LLMs, since code within a repository is inter-dependent and the entire repository may be too large to fit into the prompt. We frame repository-level coding as a planning problem and present a task-agnostic framework, called CodePlan to solve it. CodePlan synthesizes a multi-step chain of edits (plan), where each step results in a call to an LLM on a code location with context derived from the entire repository, previous code changes and task-specific instructions. CodePlan is based on a novel combination of an incremental dependency analysis, a change may-impact analysis and an adaptive planning algorithm. We evaluate the effectiveness of CodePlan on two repository-level tasks: package migration (C#) and temporal code edits (Python). Each task is evaluated on multiple code repositories, each of which requires inter-dependent changes to many files (between 2-97 files). Coding tasks of this level of complexity have not been automated using LLMs before. Our results show that CodePlan has better match with the ground truth compared to baselines. CodePlan is able to get 5/6 repositories to pass the validity checks (e.g., to build without errors and make correct code edits) whereas the baselines (without planning but with the same type of contextual information as CodePlan) cannot get any of the repositories to pass them.

A typical approach to programming is to first code the main execution scenario, and then focus on filling out alternative behaviors and corner cases. But, almost always, there exist unusual conditions that trigger atypical behaviors, which are hard to predict in program specifications, and are thus often not coded. In this paper, we consider the problem of detecting and recommending such missing behaviors, a task that we call code sophistication. Previous research on coding assistants usually focuses on recommending code fragments based on specifications of the intended behavior. In contrast, code sophistication happens in the absence of a specification, aiming to help developers complete the logic of their programs with missing and unspecified behaviors. We outline the research challenges to this problem and present early results showing how program logic can be completed by leveraging code structure and information about the usage of input parameters.

Semantic code search, retrieving code that matches a given natural language query, is an important task to improve productivity in software engineering. Existing code search datasets are problematic: either using unrealistic queries, or with mismatched codes, and typically using one-to-one query-code pairing, which fails to reflect the reality that a query might have multiple valid code matches. This paper introduces CoSQA+, pairing high-quality queries (reused from CoSQA) with multiple suitable codes. We collect code candidates from diverse sources and form candidate pairs by pairing queries with these codes. Utilizing the power of large language models (LLMs), we automate pair annotation, filtering, and code generation for queries without suitable matches. Through extensive experiments, CoSQA+ has demonstrated superior quality over CoSQA. Models trained on CoSQA+ exhibit improved performance. Furthermore, we propose a new metric Mean Multi-choice Reciprocal Rank (MMRR), to assess one-to-N code search performance. We provide the code and data at https://github.com/DeepSoftwareAnalytics/CoSQA_Plus.

LLMs demonstrate significant potential across various software engineering tasks. However, they still face challenges in generating correct code on the first attempt when addressing complex requirements. Introducing a discriminator to select reliable outputs from multiple generated results is an effective way to enhance their reliability and stability. Currently, these discriminators fall into two categories: execution-based discriminators and non-execution-based discriminators. Execution-based discriminators face flexibility challenges due to difficulties in obtaining test cases and security concerns, while non-execution-based discriminators, although more flexible, struggle to capture subtle differences in code details. To maintain flexibility while improving the model's ability to capture fine-grained code details, this paper proposes Condor. We first design contrastive learning to optimize the code representations of the base model, enabling it to reflect differences in code details. Then, we leverage intermediate data from the code modification process to further enrich the discriminator's training data, enhancing its ability to discern code details. Experimental results indicate that on the subtle code difference dataset (i.e., CodeNanoFix), Condor significantly outperforms other discriminators in discriminative performance: Condor (1.3B) improves the discriminative F1 score of DeepSeek-Coder (1.3B) from 67% to 73%. In discriminating LLM-generated outputs, Condor (1.3B) and Condor (110M) raise the Pass@1 score of Meta-Llama-3.1-Instruct (70B) on the CodeNanoFix dataset from 52.64% to 62.63% and 59.64%, respectively. Moreover, Condor demonstrates strong generalization capabilities on the MBPP and APPS datasets. For example, Condor (1.3B) improves the Pass@1 of Meta-Llama-3.1-Instruct (70B) on the APPS dataset by 147.05%.

Code search in large-scale ecosystems is often hindered by the lexical gap between user queries and implementation details, alongside the trade-off between the low latency of traditional Information Retrieval (IR) and the precision of Deep Learning (DL). We present MediaWiki Code2Code Search, a neural retrieval system for semantic code-to-code discovery. By indexing 1.29 million structural entities (functions, types, and templates) across 2,500+ MediaWiki repositories, our system enables retrieval based on computational intent rather than surface tokens. We employ a split-build architecture, decoupling GPU-intensive offline indexing from a CPU-only serving layer; our FAISS IVF-PQ index occupies 168.6 MB: a 96.6\% reduction compared to a flat float32 baseline, and achieves a median query latency of 1.85 seconds on commodity hardware, satisfying the 6 GiB RAM constraint of Wikimedia Toolforge. Our evaluation across a 27-query benchmark demonstrates superior performance over the BM25 baseline, achieving a P@10 of 0.87 compared to 0.64 (0.52 versus 0.34 for strict matching). Gains are most pronounced in name-obfuscated tasks where lexical methods fail. The system is available at https://code2codesearch.toolforge.org under the Apache 2.0 licence and provides an open RESTful API.

Grammar serves as a cornerstone in programming languages and software engineering, providing frameworks to define the syntactic space and program structure. Existing research demonstrates the effectiveness of grammar-based code representations in small-scale models, showing their ability to reduce syntax errors and enhance performance. However, as language models scale to the billion level or beyond, syntax-level errors become rare, making it unclear whether grammar information still provides performance benefits. To explore this, we develop a series of billion-scale GrammarCoder models, incorporating grammar rules in the code generation process. Experiments on HumanEval (+) and MBPP (+) demonstrate a notable improvement in code generation accuracy. Further analysis shows that grammar-based representations enhance LLMs' ability to discern subtle code differences, reducing semantic errors caused by minor variations. These findings suggest that grammar-based code representations remain valuable even in billion-scale models, not only by maintaining syntax correctness but also by improving semantic differentiation.

Open-source Large Language Models (LLMs) and their specialized variants, particularly Code LLMs, have recently delivered impressive performance. However, previous Code LLMs are typically fine-tuned on single-source data with limited quality and diversity, which may insufficiently elicit the potential of pre-trained Code LLMs. In this paper, we present AlchemistCoder, a series of Code LLMs with enhanced code generation and generalization capabilities fine-tuned on multi-source data. To achieve this, we pioneer to unveil inherent conflicts among the various styles and qualities in multi-source code corpora and introduce data-specific prompts with hindsight relabeling, termed AlchemistPrompts, to harmonize different data sources and instruction-response pairs. Additionally, we propose incorporating the data construction process into the fine-tuning data as code comprehension tasks, including instruction evolution, data filtering, and code review. Extensive experiments demonstrate that AlchemistCoder holds a clear lead among all models of the same size (6.7B/7B) and rivals or even surpasses larger models (15B/33B/70B), showcasing the efficacy of our method in refining instruction-following capabilities and advancing the boundaries of code intelligence.

Code clones are semantically similar code fragments pairs that are syntactically similar or different. Detection of code clones can help to reduce the cost of software maintenance and prevent bugs. Numerous approaches of detecting code clones have been proposed previously, but most of them focus on detecting syntactic clones and do not work well on semantic clones with different syntactic features. To detect semantic clones, researchers have tried to adopt deep learning for code clone detection to automatically learn latent semantic features from data. Especially, to leverage grammar information, several approaches used abstract syntax trees (AST) as input and achieved significant progress on code clone benchmarks in various programming languages. However, these AST-based approaches still can not fully leverage the structural information of code fragments, especially semantic information such as control flow and data flow. To leverage control and data flow information, in this paper, we build a graph representation of programs called flow-augmented abstract syntax tree (FA-AST). We construct FA-AST by augmenting original ASTs with explicit control and data flow edges. Then we apply two different types of graph neural networks (GNN) on FA-AST to measure the similarity of code pairs. As far as we have concerned, we are the first to apply graph neural networks on the domain of code clone detection. We apply our FA-AST and graph neural networks on two Java datasets: Google Code Jam and BigCloneBench. Our approach outperforms the state-of-the-art approaches on both Google Code Jam and BigCloneBench tasks.

Developers deal with code-change-related tasks daily, e.g., reviewing code. Pre-trained code and code-change-oriented models have been adapted to help developers with such tasks. Recently, large language models (LLMs) have shown their effectiveness in code-related tasks. However, existing LLMs for code focus on general code syntax and semantics rather than the differences between two code versions. Thus, it is an open question how LLMs perform on code-change-related tasks. To answer this question, we conduct an empirical study using \textgreater 1B parameters LLMs on three code-change-related tasks, i.e., code review generation, commit message generation, and just-in-time comment update, with in-context learning (ICL) and parameter-efficient fine-tuning (PEFT, including LoRA and prefix-tuning). We observe that the performance of LLMs is poor without examples and generally improves with examples, but more examples do not always lead to better performance. LLMs tuned with LoRA have comparable performance to the state-of-the-art small pre-trained models. Larger models are not always better, but Llama~2 and Code~Llama families are always the best. The best LLMs outperform small pre-trained models on the code changes that only modify comments and perform comparably on other code changes. We suggest future work should focus more on guiding LLMs to learn the knowledge specific to the changes related to code rather than comments for code-change-related tasks.

Large language models (LLMs) have become ubiquitous tools for code generation and editing. However, development teams often use multiple LLM assistants. Different developers may prefer different models, and individual developers may switch between models across different coding sessions. Because of this, the edits any one model makes are frequently applied to foreign code originally generated by another model. These LLMs are often trained on different datasets, and as a result have different stylistic preferences. Do LLMs behave differently when they edit foreign code originally written by a different LLM with a different coding style? We find that models tend to make more, and often excessive, edits on foreign code. We introduce CROCODIL (Cross-model Code Editing with LLMs), a post-training framework for reducing excessive edits while preserving functional correctness. CROCODIL's similarity reward penalizes large changes, while its execution reward scores build and test success. We use the product of these two rewards to encourage the policy to decrease the edit size without decreasing the edit task success rate. CROCODIL is available at https://github.com/EngineeringSoftware/Crocodil.

Effective code retrieval plays a crucial role in advancing code generation, bug fixing, and software maintenance, particularly as software systems increase in complexity. While current code embedding models have demonstrated promise in retrieving code snippets for small-scale, well-defined tasks, they often underperform in more demanding real-world applications such as bug localization within GitHub repositories. We hypothesize that a key issue is their reliance on noisy and inconsistent datasets for training, which impedes their ability to generalize to more complex retrieval scenarios. To address these limitations, we introduce CoRNStack, a large-scale, high-quality contrastive training dataset for code that spans multiple programming languages. This dataset is curated using consistency filtering to eliminate noisy positives and is further enriched with mined hard negatives, thereby facilitating more effective learning. We demonstrate that contrastive training of embedding models using CoRNStack leads to state-of-the-art performance across a variety of code retrieval tasks. Furthermore, the dataset can be leveraged for training code reranking models, a largely underexplored area compared to text reranking. Our finetuned code reranking model significantly improves the ranking quality over the retrieved results. Finally, by employing our code retriever and reranker together, we demonstrate significant improvements in function localization for GitHub issues, an important component of real-world software development.

Adapting Deep Learning (DL) techniques to automate non-trivial coding activities, such as code documentation and defect detection, has been intensively studied recently. Learning to predict code changes is one of the popular and essential investigations. Prior studies have shown that DL techniques such as Neural Machine Translation (NMT) can benefit meaningful code changes, including bug fixing and code refactoring. However, NMT models may encounter bottleneck when modeling long sequences, thus are limited in accurately predicting code changes. In this work, we design a Transformer-based approach, considering that Transformer has proven effective in capturing long-term dependencies. Specifically, we propose a novel model named DTrans. For better incorporating the local structure of code, i.e., statement-level information in this paper, DTrans is designed with dynamically relative position encoding in the multi-head attention of Transformer. Experiments on benchmark datasets demonstrate that DTrans can more accurately generate patches than the state-of-the-art methods, increasing the performance by at least 5.45\%-46.57\% in terms of the exact match metric on different datasets. Moreover, DTrans can locate the lines to change with 1.75\%-24.21\% higher accuracy than the existing methods.

Large language models of code (Code-LLMs) have recently brought tremendous advances to code completion, a fundamental feature of programming assistance and code intelligence. However, most existing works ignore the possible presence of bugs in the code context for generation, which are inevitable in software development. Therefore, we introduce and study the buggy-code completion problem, inspired by the realistic scenario of real-time code suggestion where the code context contains potential bugs -- anti-patterns that can become bugs in the completed program. To systematically study the task, we introduce two datasets: one with synthetic bugs derived from semantics-altering operator changes (buggy-HumanEval) and one with realistic bugs derived from user submissions to coding problems (buggy-FixEval). We find that the presence of potential bugs significantly degrades the generation performance of the high-performing Code-LLMs. For instance, the passing rates of CodeGen-2B-mono on test cases of buggy-HumanEval drop more than 50% given a single potential bug in the context. Finally, we investigate several post-hoc methods for mitigating the adverse effect of potential bugs and find that there remains a large gap in post-mitigation performance.

Modern instruction-tuned large language models (LLMs) have made remarkable progress in code generation. However, these LLMs fine-tuned with standard supervised fine-tuning (SFT) sometimes generate plausible-looking but functionally incorrect code variants. This issue likely stems from the limitation of standard SFT, which treats all tokens equally during optimization and fails to emphasize the error-sensitive segments-specific code differences between correct implementations and similar incorrect variants. To address this problem, we propose Fault-Aware Fine-Tuning (FAIT), a novel fine-tuning technique that enhances LLMs' code generation by (1) extracting multi-granularity (line/token-level) differences between correct and incorrect yet similar implementations to identify error-sensitive segments, and (2) dynamically prioritizing those segments during training via dynamic loss weighting. Through extensive experiments on seven LLMs across three widely-used benchmarks, our method achieves an average relative improvement of 6.9% on pass@1 with just one epoch of training, with some enhanced 6.7B LLMs outperforming closed-source models, e.g., GPT-3.5-Turbo. Furthermore, our fine-tuning technique demonstrates strong generalization with performance improvements ranging from 3.8% to 19.1% across diverse instruction-tuned LLMs, and our ablation studies confirm the contributions of different granularities of differences and loss function components.

Code language models need repository-level context to resolve imports, APIs, and project conventions. Existing methods inject this knowledge as long inputs (retrieved through RAG or dependency analysis) or through per-repository fine-tuning and LoRA -- costly at repository scale and brittle to evolving codebases. We introduce Code2LoRA, a hypernetwork framework that generates repository-specific LoRA adapters, effectively injecting repository knowledge with zero inference-time token overhead. Code2LoRA supports two usage scenarios: Code2LoRA-Static converts a single repository snapshot into an adapter, suitable for comprehension of stable codebases; while Code2LoRA-Evo maintains an adapter backed by a GRU hidden state updated per code diff, suitable for active development of evolving codebases. To evaluate Code2LoRA against parameter-efficient fine-tuning baselines, we build RepoPeftBench, a benchmark of 604 Python repositories with two tracks: a static track with 40K training and 12K test assertion-completion tasks, and an evolution track with 215K commit-derived training and 87K commit-derived test tasks. On the static track, Code2LoRA-Static achieves 63.8% cross-repo and 66.2% in-repo exact match, matching the per-repository LoRA upper bound; on the evolution track, Code2LoRA-Evo achieves 60.3% cross-repo exact match (+5.2 pp over a single shared LoRA). Code2LoRA's code can be found at https://anonymous.4open.science/r/code2lora-6857; the model checkpoints and RepoPeftBench datasets can be found at https://huggingface.co/code2lora.

Tests that cause spurious failures without any code changes, i.e., flaky tests, hamper regression testing, increase maintenance costs, may shadow real bugs, and decrease trust in tests. While the prevalence and importance of flakiness is well established, prior research focused on Java projects, thus raising the question of how the findings generalize. In order to provide a better understanding of the role of flakiness in software development beyond Java, we empirically study the prevalence, causes, and degree of flakiness within software written in Python, one of the currently most popular programming languages. For this, we sampled 22352 open source projects from the popular PyPI package index, and analyzed their 876186 test cases for flakiness. Our investigation suggests that flakiness is equally prevalent in Python as it is in Java. The reasons, however, are different: Order dependency is a much more dominant problem in Python, causing 59% of the 7571 flaky tests in our dataset. Another 28% were caused by test infrastructure problems, which represent a previously undocumented cause of flakiness. The remaining 13% can mostly be attributed to the use of network and randomness APIs by the projects, which is indicative of the type of software commonly written in Python. Our data also suggests that finding flaky tests requires more runs than are often done in the literature: A 95% confidence that a passing test case is not flaky on average would require 170 reruns.

Code generation models have shown significant potential for programming tasks. However, existing training methods like supervised fine-tuning face key limitations: they do not effectively teach models to prioritize correct over incorrect solutions in ambiguous situations, nor do they effectively optimize the runtime efficiency of the generated code. To address these challenges, we propose CodeDPO, a framework that integrates preference learning into code generation to improve two key code preference factors: code correctness and efficiency. CodeDPO employs a novel dataset construction method, utilizing a self-generation-and-validation mechanism that simultaneously generates and evaluates code and test cases. The underlying assumption is that test cases executable by multiple code snippets provide more reliable validation, and code that passes more tests is more likely to be correct. Through this self-validation process, our PageRank-inspired algorithm iteratively updates the ranking score of each code snippet, ultimately creating a code preference optimization dataset based on correctness and efficiency. CodeDPO is flexible and scalable, generating diverse preference optimization data without depending on external resources. Through comprehensive evaluations of five widely used benchmarks, CodeDPO demonstrates significant improvements in correctness and efficiency compared to existing methods. Our experiments prove that CodeDPO enhances the capabilities of LLMs in code generation and provides a robust foundation for conducting code preference optimization in more complex and challenging real-world scenarios.

Assessing similarity in source code has gained significant attention in recent years due to its importance in software engineering tasks such as clone detection and code search and recommendation. This work presents a comparative analysis of unsupervised similarity measures for identifying source code clone detection. The goal is to overview the current state-of-the-art techniques, their strengths, and weaknesses. To do that, we compile the existing unsupervised strategies and evaluate their performance on a benchmark dataset to guide software engineers in selecting appropriate methods for their specific use cases. The source code of this study is available at https://github.com/jorge-martinez-gil/codesim

Recently, deep learning techniques have shown great success in automatic code generation. Inspired by the code reuse, some researchers propose copy-based approaches that can copy the content from similar code snippets to obtain better performance. Practically, human developers recognize the content in the similar code that is relevant to their needs, which can be viewed as a code sketch. The sketch is further edited to the desired code. However, existing copy-based approaches ignore the code sketches and tend to repeat the similar code without necessary modifications, which leads to generating wrong results. In this paper, we propose a sketch-based code generation approach named SkCoder to mimic developers' code reuse behavior. Given a natural language requirement, SkCoder retrieves a similar code snippet, extracts relevant parts as a code sketch, and edits the sketch into the desired code. Our motivations are that the extracted sketch provides a well-formed pattern for telling models "how to write". The post-editing further adds requirement-specific details to the sketch and outputs the complete code. We conduct experiments on two public datasets and a new dataset collected by this work. We compare our approach to 20 baselines using 5 widely used metrics. Experimental results show that (1) SkCoder can generate more correct programs, and outperforms the state-of-the-art - CodeT5-base by 30.30%, 35.39%, and 29.62% on three datasets. (2) Our approach is effective to multiple code generation models and improves them by up to 120.1% in Pass@1. (3) We investigate three plausible code sketches and discuss the importance of sketches. (4) We manually evaluate the generated code and prove the superiority of our SkCoder in three aspects.

Code embeddings capture the semantic representations of code and are crucial for various code-related large language model (LLM) applications, such as code search. Previous training primarily relies on optimizing the InfoNCE loss by comparing positive natural language (NL)-code pairs with in-batch negatives. However, due to the sparse nature of code contexts, training solely by comparing the major differences between positive and negative pairs may fail to capture deeper semantic nuances. To address this issue, we propose a novel order-augmented strategy for improved code search (OASIS). It leverages order-based similarity labels to train models to capture subtle differences in similarity among negative pairs. Extensive benchmark evaluations demonstrate that our OASIS model significantly outperforms previous state-of-the-art models focusing solely on major positive-negative differences. It underscores the value of exploiting subtle differences among negative pairs with order labels for effective code embedding training.

In recent years, researchers have created and introduced a significant number of various code generation models. As human evaluation of every new model version is unfeasible, the community adopted automatic evaluation metrics such as BLEU to approximate the results of human judgement. These metrics originate from the machine translation domain and it is unclear whether they are applicable for the code generation tasks and how well they agree with the human evaluation on this task. There are also other metrics, CodeBLEU and RUBY, developed to estimate the similarity of code, that take into account the properties of source code. However, for these metrics there are hardly any studies on their agreement with the human evaluation. Despite all that, minimal differences in the metric scores have been used in recent papers to claim superiority of some code generation models over the others. In this paper, we present a study on the applicability of six metrics -- BLEU, ROUGE-L, METEOR, ChrF, CodeBLEU, and RUBY -- for evaluation of code generation models. We conduct a study on two different code generation datasets and use human annotators to assess the quality of all models run on these datasets. The results indicate that for the CoNaLa dataset of Python one-liners, none of the metrics can correctly emulate human judgement on which model is better with >95% certainty if the difference in model scores is less than 5 points. For the HearthStone dataset, which consists of classes of a particular structure, a difference in model scores of at least 2 points is enough to claim the superiority of one model over the other. Our findings suggest that the ChrF metric is a better fit for the evaluation of code generation models than the commonly used BLEU and CodeBLEU. Yet, finding a metric for code generation that closely agrees with humans requires additional work.

As the use of large language models (LLMs) for code generation becomes more prevalent in software development, it is critical to enhance both the efficiency and correctness of the generated code. Existing methods and models primarily focus on the correctness of LLM-generated code, ignoring efficiency. In this work, we present Effi-Code, an approach to enhancing code generation in LLMs that can improve both efficiency and correctness. We introduce a Self-Optimization process based on Overhead Profiling that leverages open-source LLMs to generate a high-quality dataset of correct and efficient code samples. This dataset is then used to fine-tune various LLMs. Our method involves the iterative refinement of generated code, guided by runtime performance metrics and correctness checks. Extensive experiments demonstrate that models fine-tuned on the Effi-Code show significant improvements in both code correctness and efficiency across task types. For example, the pass@1 of DeepSeek-Coder-6.7B-Instruct generated code increases from 43.3\% to 76.8\%, and the average execution time for the same correct tasks decreases by 30.5\%. Effi-Code offers a scalable and generalizable approach to improving code generation in AI systems, with potential applications in software development, algorithm design, and computational problem-solving. The source code of Effi-Code was released in https://github.com/huangd1999/Effi-Code.

Large Language Models (LLMs) have recently demonstrated remarkable coding capabilities. However, assessing code generation based on well-formed properties and aligning it with developer preferences remains challenging. In this paper, we explore two key questions under the new challenge of code preference learning: (i) How do we train models to predict meaningful preferences for code? and (ii) How do human and LLM preferences align with verifiable code properties and developer code tastes? To this end, we propose CodeFavor, a framework for training pairwise code preference models from synthetic evolution data, including code commits and code critiques. To evaluate code preferences, we introduce CodePrefBench, a benchmark comprising 1364 rigorously curated code preference tasks to cover three verifiable properties-correctness, efficiency, and security-along with human preference. Our evaluation shows that CodeFavor holistically improves the accuracy of model-based code preferences by up to 28.8%. Meanwhile, CodeFavor models can match the performance of models with 6-9x more parameters while being 34x more cost-effective. We also rigorously validate the design choices in CodeFavor via a comprehensive set of controlled experiments. Furthermore, we discover the prohibitive costs and limitations of human-based code preference: despite spending 23.4 person-minutes on each task, 15.1-40.3% of tasks remain unsolved. Compared to model-based preference, human preference tends to be more accurate under the objective of code correctness, while being sub-optimal for non-functional objectives.

Scientists increasingly rely on open-source tools to support their research workflows, yet discovering relevant software among over 600 million GitHub repositories remains challenging. Existing code search benchmarks focus on general software engineering tasks and fail to capture the domain-specific vocabulary and needs of scientific computing. We present a curated corpus of 5,264 high-quality, domain-classified scientific repositories spanning five NASA Science Mission Directorate divisions -- Earth Science, Astrophysics, Planetary Science, Heliophysics, and Biological & Physical Sciences -- enriched with cleaned READMEs, extracted topics, and additional context from crawled links. Building on this corpus, we introduce two novel information retrieval benchmarks: (1) a repository search benchmark with 219 expert-curated queries designed by domain scientists, and (2) a large-scale code snippet retrieval benchmark containing 117,950 code snippets and 119,720 queries across seven programming languages. Baseline evaluations on repository search reveal significant performance variation across scientific domains. Code snippet retrieval proves equally challenging, with substantial variation driven by differing documentation practices, coding standards, and programming language conventions across scientific communities. All datasets and benchmarks are publicly released on HuggingFace to support research on scientific tool discovery.

Embedding-based code retrieval is a core component of coding agents and retrieval-augmented code generation, where retrieving correct code matters more than retrieving lexically similar code. Existing code-retrieval benchmarks do not plant controlled, execution-verified single-edit variants of each query's canonical implementation in the search pool, leaving the question of whether embeddings can functionally discriminate correct from near-clone-but-incorrect code unanswered in a retrieval setting. Resolving this requires a benchmark whose search pool itself contains the relevant counterfactuals -- execution-verified buggy variants near-identical to each canonical -- so that a retriever's rank ordering can be directly tested for functional discrimination rather than topical or identity overlap. We introduce ExecRetrieval, 939 Python tasks each paired with one execution-verified canonical implementation and up to four execution-verified buggy distractors, each generated by a mechanical mutation making a single targeted edit, and evaluate 23 dense embedding configurations plus BM25 under provider-native invocation with paired McNemar tests and query-level bootstrap intervals. With near-clone counterfactuals in the pool, the top hosted system reaches exec@10 = 1.00 but only exec@1 = 0.331; rank-1 misses are paired buggy variants 91.5-99.4% of the time across the four leading systems, and the canonical scores below at least one of its four paired distractors in 67-78% of queries on the leading systems. The full dataset, execution oracle, embedding matrices, environment snapshot, and pairwise statistical tests are released at the URL in Appendix D.

As AI code assistants become increasingly integrated into software development workflows, understanding how their code compares to human-written programs is critical for ensuring reliability, maintainability, and security. In this paper, we present a large-scale comparison of code authored by human developers and three state-of-the-art LLMs, i.e., ChatGPT, DeepSeek-Coder, and Qwen-Coder, on multiple dimensions of software quality: code defects, security vulnerabilities, and structural complexity. Our evaluation spans over 500k code samples in two widely used languages, Python and Java, classifying defects via Orthogonal Defect Classification and security vulnerabilities using the Common Weakness Enumeration. We find that AI-generated code is generally simpler and more repetitive, yet more prone to unused constructs and hardcoded debugging, while human-written code exhibits greater structural complexity and a higher concentration of maintainability issues. Notably, AI-generated code also contains more high-risk security vulnerabilities. These findings highlight the distinct defect profiles of AI- and human-authored code and underscore the need for specialized quality assurance practices in AI-assisted programming.

The rapid deployment of Large Language Models (LLMs) requires careful consideration of their effect on cybersecurity. Our work aims to improve the selection process of LLMs that are suitable for facilitating Secure Coding (SC). This raises challenging research questions, such as (RQ1) Which functionality can streamline the LLM evaluation? (RQ2) What should the evaluation measure? (RQ3) How to attest that the evaluation process is impartial? To address these questions, we introduce LLMSecCode, an open-source evaluation framework designed to assess LLM SC capabilities objectively. We validate the LLMSecCode implementation through experiments. When varying parameters and prompts, we find a 10% and 9% difference in performance, respectively. We also compare some results to reliable external actors, where our results show a 5% difference. We strive to ensure the ease of use of our open-source framework and encourage further development by external actors. With LLMSecCode, we hope to encourage the standardization and benchmarking of LLMs' capabilities in security-oriented code and tasks.

Code search is crucial for code reuse, enabling developers to efficiently locate relevant snippets. Current methods rely on encoder-based models, which suffer from limitations such as poor generalization and restricted input lengths. Decoder-only large language models (LLMs), with their extensive pre-training, larger size, and longer input capabilities, offer potential solutions to these issues, yet their effectiveness in code search remains underexplored. To fill this gap, our study presents the first systematic exploration of decoder-only LLMs for code search. We evaluate nine state-of-the-art decoder-only models using two fine-tuning methods, two datasets (CSN and CoSQA^+), and three model sizes. Our findings reveal that fine-tuned CodeGemma significantly outperforms encoder-only models like UniXcoder, achieving a 5.57% improvement in MRR on CSN and a 49.6% increase in MAP on CoSQA^+ compared to zero-shot UniXcoder. These results highlight the superior performance and adaptability of decoder-only models. Additionally, we provide valuable insights into optimizing these models for code search, covering aspects such as model selection, fine-tuning methods, training data, and model size, and discussing their strengths and limitations.

Automatically highlighting words that cause semantic differences between two documents could be useful for a wide range of applications. We formulate recognizing semantic differences (RSD) as a token-level regression task and study three unsupervised approaches that rely on a masked language model. To assess the approaches, we begin with basic English sentences and gradually move to more complex, cross-lingual document pairs. Our results show that an approach based on word alignment and sentence-level contrastive learning has a robust correlation to gold labels. However, all unsupervised approaches still leave a large margin of improvement. Code to reproduce our experiments is available at https://github.com/ZurichNLP/recognizing-semantic-differences

Identifiers, such as method and variable names, form a large portion of source code. Therefore, low-quality identifiers can substantially hinder code comprehension. To support developers in using meaningful identifiers, several (semi-)automatic techniques have been proposed, mostly being data-driven (e.g. statistical language models, deep learning models) or relying on static code analysis. Still, limited empirical investigations have been performed on the effectiveness of such techniques for recommending developers with meaningful identifiers, possibly resulting in rename refactoring operations. We present a large-scale study investigating the potential of data-driven approaches to support automated variable renaming. We experiment with three state-of-the-art techniques: a statistical language model and two DL-based models. The three approaches have been trained and tested on three datasets we built with the goal of evaluating their ability to recommend meaningful variable identifiers. Our quantitative and qualitative analyses show the potential of such techniques that, under specific conditions, can provide valuable recommendations and are ready to be integrated in rename refactoring tools. Nonetheless, our results also highlight limitations of the experimented approaches that call for further research in this field.

We introduce Differential Performance Evaluation (DPE), a framework designed to reliably evaluate Large Language Models (LLMs) for efficient code generation. Traditional coding benchmarks often fail to provide reliable insights into code efficiency, due to their reliance on simplistic test inputs and the absence of effective compound metrics. DPE addresses these issues by focusing on efficiency-demanding programming tasks and establishing an insightful compound metric for performance evaluation. DPE operates in two phases: To curate efficiency datasets, it selects efficiency-demanding tasks from existing coding benchmarks and generates computationally expensive inputs to stress the efficiency of LLM solutions. To assess the code efficiency, DPE profiles the new solution and compares it globally against a set of reference solutions that exhibit distinct efficiency levels, where the matched level defines its efficiency score. As a proof of concept, we use DPE to create EvalPerf, a benchmark with 121 performance-challenging coding tasks. Our comprehensive evaluation draws interesting findings on the efficiency impact of model sizes, instruction tuning, and prompting. For example, while the scaling law fails to account for code efficiency, general instruction tuning benefits both code correctness and efficiency. We also evaluate the evaluation by examining the effectiveness of DPE, showing that EvalPerf is reliable and convenient to use even across platforms.

Code is seldom written in a single left-to-right pass and is instead repeatedly edited and refined. We introduce InCoder, a unified generative model that can perform program synthesis (via left-to-right generation) as well as editing (via infilling). InCoder is trained to generate code files from a large corpus of permissively licensed code, where regions of code have been randomly masked and moved to the end of each file, allowing code infilling with bidirectional context. Our model is the first generative model that is able to directly perform zero-shot code infilling, which we evaluate on challenging tasks such as type inference, comment generation, and variable re-naming. We find that the ability to condition on bidirectional context substantially improves performance on these tasks, while still performing comparably on standard program synthesis benchmarks in comparison to left-to-right only models pretrained at similar scale. The InCoder models and code are publicly released. https://sites.google.com/view/incoder-code-models

Assessing the degree of similarity of code fragments is crucial for ensuring software quality, but it remains challenging due to the need to capture the deeper semantic aspects of code. Traditional syntactic methods often fail to identify these connections. Recent advancements have addressed this challenge, though they frequently sacrifice interpretability. To improve this, we present an approach aiming to improve the transparency of the similarity assessment by using GraphCodeBERT, which enables the identification of semantic relationships between code fragments. This approach identifies similar code fragments and clarifies the reasons behind that identification, helping developers better understand and trust the results. The source code for our implementation is available at https://www.github.com/jorge-martinez-gil/graphcodebert-interpretability.

Maintainability is a core dimension of software engineering, shaping how code is written, reviewed, and developed over time. While coding agents have demonstrated strong performance on single-issue tasks, it remains unclear how maintainable their code is when future agents build on top of it, potentially leading to compounding downstream effects. We investigate how agent code compares to human code in these maintenance settings, presenting CodeThread, a framework to construct controlled experiments from repository-level coding benchmarks. Applying CodeThread to four frontier coding agents and four benchmarks, we find that agents are less effective at resolving tasks when building on agent code compared to human code, with task resolve rate drops of up to 13.1%. Regression analysis reveals that many traditional software engineering maintainability metrics do not explain this difference. Instead, the clearest signals are subtler behavioral differences in agent code, such as changes to input validation and error handling, along with differences in downstream code size and task difficulty. These findings highlight the need to evaluate these systems not only by immediate task resolution but also by code maintainability, and point to potential sources of downstream errors introduced by agent code.

Large Language Models (LLMs) have demonstrated great potential for assisting developers in their daily development. However, most research focuses on generating correct code, how to use LLMs to generate personalized code has seldom been investigated. To bridge this gap, we proposed MPCoder (Multi-user Personalized Code Generator) to generate personalized code for multiple users. To better learn coding style features, we utilize explicit coding style residual learning to capture the syntax code style standards and implicit style learning to capture the semantic code style conventions. We train a multi-user style adapter to better differentiate the implicit feature representations of different users through contrastive learning, ultimately enabling personalized code generation for multiple users. We further propose a novel evaluation metric for estimating similarities between codes of different coding styles. The experimental results show the effectiveness of our approach for this novel task.

Code search has usually been evaluated as first-stage retrieval, even though production systems rely on broader pipelines with reranking and developer-style queries. Existing benchmarks also suffer from data contamination, label noise, and degenerate binary relevance. In this paper, we introduce CoREB, a contamination-limited, multitask code retrieval and reranking benchmark, together with a fine-tuned code reranker, that goes beyond retrieval to cover the full code search pipeline. CoREB is built from counterfactually rewritten LiveCodeBench problems in five programming languages and delivered as timed releases with graded relevance judgments. We benchmark eleven embedding models and five rerankers across three tasks: text-to-code, code-to-text, and code-to-code. Our experiments reveal that: \circone code-specialised embeddings dominate code-to-code retrieval ({sim}2{times} over general encoders), yet no single model wins all three tasks; \circtwo short keyword queries, the format closest to real developer search, collapse every model to near-zero nDCG@10; \circthree off-the-shelf rerankers are task-asymmetric, with a 12-point swing on code-to-code and no baseline net-positive across all tasks; \circfour our fine-tuned CoREB-Reranker is the first to achieve consistent gains across all three tasks. The data and model are released.

The field of big code relies on mining large corpora of code to perform some learning task. A significant threat to this approach has been recently identified by Lopes et al. (2017) who found a large amount of near-duplicate code on GitHub. However, the impact of code duplication has not been noticed by researchers devising machine learning models for source code. In this work, we explore the effects of code duplication on machine learning models showing that reported performance metrics are sometimes inflated by up to 100% when testing on duplicated code corpora compared to the performance on de-duplicated corpora which more accurately represent how machine learning models of code are used by software engineers. We present a duplication index for widely used datasets, list best practices for collecting code corpora and evaluating machine learning models on them. Finally, we release tools to help the community avoid this problem in future research.

Recent years have seen the rise of Deep Learning (DL) techniques applied to source code. Researchers have exploited DL to automate several development and maintenance tasks, such as writing commit messages, generating comments and detecting vulnerabilities among others. One of the long lasting dreams of applying DL to source code is the possibility to automate non-trivial coding activities. While some steps in this direction have been taken (e.g., learning how to fix bugs), there is still a glaring lack of empirical evidence on the types of code changes that can be learned and automatically applied by DL. Our goal is to make this first important step by quantitatively and qualitatively investigating the ability of a Neural Machine Translation (NMT) model to learn how to automatically apply code changes implemented by developers during pull requests. We train and experiment with the NMT model on a set of 236k pairs of code components before and after the implementation of the changes provided in the pull requests. We show that, when applied in a narrow enough context (i.e., small/medium-sized pairs of methods before/after the pull request changes), NMT can automatically replicate the changes implemented by developers during pull requests in up to 36% of the cases. Moreover, our qualitative analysis shows that the model is capable of learning and replicating a wide variety of meaningful code changes, especially refactorings and bug-fixing activities. Our results pave the way for novel research in the area of DL on code, such as the automatic learning and applications of refactoring.

Large Language Models (LLMs), such as GPT-4, StarCoder, and CodeLlama, are transforming the way developers approach programming by automatically generating code based on given natural language descriptions. Despite advancements, generating syntactically and semantically correct code remains challenging, especially for complex programming tasks. Existing approaches typically generate multiple candidate solutions using LLMs to increase the likelihood of producing correct code. However, selecting the correct code from these candidates-a process known as code ranking-remains a major challenge. Current research on code ranking can be categorized into execution-based and non-execution-based methods. Execution-based methods, although effective, encounter notable limitations, such as scarcity of quality unit tests and security risks. Non-execution-based methods like CodeRanker, which rely solely on classification labels to train a code ranker, struggle to capture subtle errors and provide detailed error insights. Recognizing the strengths and limitations of both approaches, we propose a new method. The key insight of our work is that an effective code ranker is expected to truly comprehend the underlying causes of erroneous code, as relying solely on classification labels is insufficient. Inspired by this, this paper puts forward RankEF, an innovative approach for code ranking that leverages execution feedback. RankEF employs multi-task learning to integrate code classification with execution feedback generation. This approach enables the model to understand the reasons behind incorrect code, distinguishing between correct and incorrect solutions without the need to execute the code during the ranking phase. Experiments on three code generation benchmarks demonstrate that RankEF significantly outperforms the state-of-the-art CodeRanker.

Preference learning enhances Code LLMs beyond supervised fine-tuning by leveraging relative quality comparisons. Existing methods construct preference pairs from candidates based on test case success, treating the higher pass rate sample as positive and the lower as negative. However, this approach does not pinpoint specific errors in the code, which prevents the model from learning more informative error correction patterns, as aligning failing code as a whole lacks the granularity needed to capture meaningful error-resolution relationships. To address these issues, we propose IterPref, a new preference alignment framework that mimics human iterative debugging to refine Code LLMs. IterPref explicitly locates error regions and aligns the corresponding tokens via a tailored DPO algorithm. To generate informative pairs, we introduce the CodeFlow dataset, where samples are iteratively refined until passing tests, with modifications capturing error corrections. Extensive experiments show that a diverse suite of Code LLMs equipped with IterPref achieves significant performance gains in code generation and improves on challenging tasks like BigCodeBench. In-depth analysis reveals that IterPref yields fewer errors. Our code and data will be made publicaly available.

AI coding assistants are now widely used in software development. Software developers increasingly integrate AI-generated code into their codebases to improve productivity. Prior studies have shown that AI-generated code may contain code quality issues under controlled settings. However, we still know little about the real-world impact of AI-generated code on software quality and maintenance after it is introduced into production repositories. In other words, it remains unclear whether such issues are quickly fixed or persist and accumulate over time as technical debt. In this paper, we conduct a large-scale empirical study on the technical debt introduced by AI coding assistants in the wild. To achieve that, we built a dataset of 302.6k verified AI-authored commits from 6,299 GitHub repositories, covering five widely used AI coding assistants. For each commit, we run static analysis before and after the change to precisely attribute which code smells, correctness issues, and security issues the AI introduced. We then track each introduced issue from the introducing commit to the latest repository revision to study its lifecycle. Our results show that we identified 484,366 distinct issues, and that code smells are by far the most common type, accounting for 89.3% of all issues. We also find that more than 15% of commits from every AI coding assistant introduce at least one issue, although the rates vary across tools. More importantly, 22.7% of tracked AI-introduced issues still survive at the latest version of the repository. These findings show that AI-generated code can introduce long-term maintenance costs into real software projects and highlight the need for stronger quality assurance in AI-assisted development.

Code editing encompasses a variety of pragmatic tasks that developers deal with daily. Despite its relevance and practical usefulness, automatic code editing remains an underexplored area in the evolution of deep learning models, partly due to data scarcity. In this work, we explore the use of large language models (LLMs) to edit code based on user instructions, covering a broad range of implicit tasks such as comment insertion, code optimization, and code refactoring. To facilitate this, we introduce InstructCoder, the first dataset designed to adapt LLMs for general-purpose code editing, containing highdiversity code-editing tasks. It consists of over 114,000 instruction-input-output triplets and covers multiple distinct code editing scenarios. The dataset is systematically expanded through an iterative process that commences with code editing data sourced from GitHub commits as seed tasks. Seed and generated tasks are used subsequently to prompt ChatGPT for more task data. Our experiments demonstrate that open-source LLMs fine-tuned on InstructCoder can edit code correctly based on users' instructions most of the time, exhibiting unprecedented code-editing performance levels. Such results suggest that proficient instruction-finetuning can lead to significant amelioration in code editing abilities. The dataset and the source code are available at https://github.com/qishenghu/CodeInstruct.

Code search aims to precisely find relevant code snippets that match natural language queries within massive codebases, playing a vital role in software development. Recent advances leverage pre-trained language models (PLMs) to bridge the semantic gap between unstructured natural language (NL) and structured programming languages (PL), yielding significant improvements over traditional information retrieval and early deep learning approaches. However, existing PLM-based methods still encounter key challenges, including a fundamental semantic gap between human intent and machine execution logic, as well as limited robustness to diverse code styles. To address these issues, we propose PseudoBridge, a novel code retrieval framework that introduces pseudo-code as an intermediate, semi-structured modality to better align NL semantics with PL logic. Specifically, PseudoBridge consists of two stages. First, we employ an advanced large language model (LLM) to synthesize pseudo-code, enabling explicit alignment between NL queries and pseudo-code. Second, we introduce a logic-invariant code style augmentation strategy and employ the LLM to generate stylistically diverse yet logically equivalent code implementations with pseudo-code, then align the code snippets of different styles with pseudo-code, enhancing model robustness to code style variation. We build PseudoBridge across 10 different PLMs and evaluate it on 6 mainstream programming languages. Extensive experiments demonstrate that PseudoBridge consistently outperforms baselines, achieving significant gains in retrieval accuracy and generalization, particularly under zero-shot domain transfer scenarios such as Solidity and XLCoST datasets. These results demonstrate the effectiveness of explicit logical alignment via pseudo-code and highlight PseudoBridge's potential as a robust, generalizable solution for code retrieval.

Code retrieval is allowing software engineers to search codes through a natural language query, which relies on both natural language processing and software engineering techniques. There have been several attempts on code retrieval from searching snippet codes to function codes. In this paper, we introduce Augmented Code (AugmentedCode) retrieval which takes advantage of existing information within the code and constructs augmented programming language to improve the code retrieval models' performance. We curated a large corpus of Python and showcased the the framework and the results of augmented programming language which outperforms on CodeSearchNet and CodeBERT with a Mean Reciprocal Rank (MRR) of 0.73 and 0.96, respectively. The outperformed fine-tuned augmented code retrieval model is published in HuggingFace at https://huggingface.co/Fujitsu/AugCode and a demonstration video is available at: https://youtu.be/mnZrUTANjGs .

Large language models can generate plausible quantum code, but it is unclear whether they can reliably target the specific software development kit (SDK) version requested by the user. We study this problem as API drift and introduce quantum-api-drift, a benchmark for measuring version fidelity, defined here as execution success on the requested SDK version, cross-version compatibility, failure modes, and documentation-guided repair in LLM-generated quantum SDK code. We instantiate the benchmark with Qiskit, a representative quantum SDK that underwent substantial interface changes across v0.43, v1.3, and v2.0. We evaluate 17 models on 50 tasks with 3 samples per prompt, yielding 450 generated samples and 1,350 executions per model. Sixteen models are tested in a matched REST API setting with a 1024-token output cap, while GPT-5.4 (Codex CLI) is reported separately as a reference configuration. Across the 16 matched REST models, diagonal Pass@1 ranges from 0.02 to 0.85. Claude Opus 4.7 is strongest on v0.43 and v2.0, while Grok 4.20 is strongest on v1.3 at 0.513. Error profiles differ systematically by model strength: weaker models fail mainly with broken imports, while stronger models more often reach deprecation-level failures. Documentation-guided repair succeeds for 0.19 to 0.59 of repair attempts overall and is consistently much more effective for migration to v2.0 than to v1.3. The benchmark artifacts are publicly available at https://github.com/arasyi/quantum-api-drift. These results show that version alignment is a distinct evaluation axis for quantum code generation and that API drift remains only partly recoverable even with migration guidance.

Since the advent of reasoning-based large language models, many have found great success from distilling reasoning capabilities into student models. Such techniques have significantly bridged the gap between reasoning and standard LLMs on coding tasks. Despite this, much of the progress on distilling reasoning models remains locked behind proprietary datasets or lacks details on data curation, filtering and subsequent training. To address this, we construct a superior supervised fine-tuning (SFT) dataset that we use to achieve state-of-the-art coding capability results in models of various sizes. Our distilled models use only SFT to achieve 61.8% on LiveCodeBench and 24.6% on CodeContests, surpassing alternatives trained with reinforcement learning. We then perform analysis on the data sources used to construct our dataset, the impact of code execution filtering, and the importance of instruction/solution diversity. We observe that execution filtering negatively affected benchmark accuracy, leading us to prioritize instruction diversity over solution correctness. Finally, we also analyze the token efficiency and reasoning patterns utilized by these models. We will open-source these datasets and distilled models to the community.

Software engineering activities frequently involve edits to existing code. However, contemporary code language models (LMs) lack the ability to handle diverse types of code-edit requirements. In this work, we attempt to overcome this shortcoming through (1) a novel synthetic data generation pipeline and (2) a robust model adaptation algorithm. Starting with seed code examples and diverse editing criteria, our pipeline generates high-quality samples comprising original and modified code, along with natural language instructions in different styles and verbosity. Today's code LMs come bundled with strong abilities, such as code generation and instruction following, which should not be lost due to fine-tuning. To ensure this, we propose a novel adaptation algorithm, SeleKT, that (a) leverages a dense gradient-based step to identify the weights that are most important for code editing, and (b) does a sparse projection onto the base model to avoid overfitting. Using our approach, we obtain a new series of models NextCoder (adapted from QwenCoder-2.5) that achieves strong results on five code-editing benchmarks, outperforming comparable size models and even several larger ones. We show the generality of our approach on two model families (DeepSeekCoder and QwenCoder), compare against other fine-tuning approaches, and demonstrate robustness by showing retention of code generation abilities post adaptation.

In this paper, we describe and present the first dataset of source code plagiarism specifically aimed at contest plagiarism. The dataset contains 251 pairs of plagiarized solutions of competitive programming tasks in Java, as well as 660 non-plagiarized ones, however, the described approach can be used to extend the dataset in the future. Importantly, each pair comes in two versions: (a) "raw" and (b) with participants' repeated template code removed, allowing for evaluating tools in different settings. We used the collected dataset to compare the available source code plagiarism detection tools, including state-of-the-art ones, specifically in their ability to detect contest plagiarism. Our results indicate that the tools show significantly worse performance on the contest plagiarism because of the template code and the presence of other misleadingly similar code. Of the tested tools, token-based ones demonstrated the best performance in both variants of the dataset.

Binary code analysis and comprehension is critical to applications in reverse engineering and computer security tasks where source code is not available. Unfortunately, unlike source code, binary code lacks semantics and is more difficult for human engineers to understand and analyze. In this paper, we present ContraBin, a contrastive learning technique that integrates source code and comment information along with binaries to create an embedding capable of aiding binary analysis and comprehension tasks. Specifically, we present three components in ContraBin: (1) a primary contrastive learning method for initial pre-training, (2) a simplex interpolation method to integrate source code, comments, and binary code, and (3) an intermediate representation learning algorithm to train a binary code embedding. We further analyze the impact of human-written and synthetic comments on binary code comprehension tasks, revealing a significant performance disparity. While synthetic comments provide substantial benefits, human-written comments are found to introduce noise, even resulting in performance drops compared to using no comments. These findings reshape the narrative around the role of comment types in binary code analysis. We evaluate the effectiveness of ContraBin through four indicative downstream tasks related to binary code: algorithmic functionality classification, function name recovery, code summarization, and reverse engineering. The results show that ContraBin considerably improves performance on all four tasks, measured by accuracy, mean of average precision, and BLEU scores as appropriate. ContraBin is the first language representation model to incorporate source code, binary code, and comments into contrastive code representation learning and is intended to contribute to the field of binary code analysis. The dataset used in this study is available for further research.

SciCode is the standard measure of the scientific-coding ability of language models: research-level problems that demand both frontier scientific theory and its implementation as working numerical code. It is a component of the Artificial Analysis Intelligence Index and a standing evaluation in government and national-laboratory suites. Yet its scores have recently plateaued: the strongest 2026 models cluster tightly around 60\% subproblem accuracy, and a successor model ties its predecessor. We trace this stagnation to defects in the benchmark itself. A per-problem, domain-expert audit of all 65 test problems uncovers 263 defects; 192 of them, spread across 91\% of the main problems, cause correct, instruction-following solutions to be wrongly rejected---through non-reproducible gold answers, over-tight tolerances, or self-contradictory specifications. Critically, 78\% of these score-suppressing defects require specialized physics or mathematics knowledge to detect, not mere clerical proofreading. We corrected every confirmable defect to produce SciCode-Verified. The corrections add only the specifications a well-posed problem requires, repair grading, and tighten the tests that were too lenient; every change is recorded with its justification and independently re-checked by a second domain expert. We re-evaluate twelve frontier model snapshots on the corrected benchmark and find a substantial recovery: subproblem accuracy rises from 45--60\% to 84--98\%, and main-problem accuracy from 9--27\% to 69--92\%. State-of-the-art models are far more proficient in scientific coding than SciCode has suggested---the bottleneck was not model capability, but the quality of the evaluation instrument. We release SciCode-Verified with its complete audit trail as the corrected public standard.

Large Language Models for code often entail significant computational complexity, which grows significantly with the length of the input code sequence. We propose LeanCode for code simplification to reduce training and prediction time, leveraging code contexts in utilizing attention scores to represent the tokens' importance. We advocate for the selective removal of tokens based on the average context-aware attention scores rather than average scores across all inputs. LeanCode uses the attention scores of `CLS' tokens within the encoder for classification tasks, such as code search. It also employs the encoder-decoder attention scores to determine token significance for sequence-to-sequence tasks like code summarization. Our evaluation shows LeanCode's superiority over the SOTAs DietCode and Slimcode, with improvements of 60% and 16% for code search, and 29% and 27% for code summarization, respectively.

Redundant code is a persistent challenge in software development that makes systems harder to maintain, scale, and update. It adds unnecessary complexity, hinders bug fixes, and increases technical debt. Despite their impact, removing redundant code manually is risky and error-prone, often introducing new bugs or missing dependencies. While studies highlight the prevalence and negative impact of redundant code, little focus has been given to Artificial Intelligence (AI) system codebases and the common patterns that cause redundancy. Additionally, the reasons behind developers unintentionally introducing redundant code remain largely unexplored. This research addresses these gaps by leveraging large language models (LLMs) to automatically detect and optimize redundant code in AI projects. Our research aims to identify recurring patterns of redundancy and analyze their underlying causes, such as outdated practices or insufficient awareness of best coding principles. Additionally, we plan to propose an LLM agent that will facilitate the detection and refactoring of redundancies on a large scale while preserving original functionality. This work advances the application of AI in identifying and optimizing redundant code, ultimately helping developers maintain cleaner, more readable, and scalable codebases.

Code comments are a key resource for information about software artefacts. Depending on the use case, only some types of comments are useful. Thus, automatic approaches to classify these comments have been proposed. In this work, we address this need by proposing, STACC, a set of SentenceTransformers-based binary classifiers. These lightweight classifiers are trained and tested on the NLBSE Code Comment Classification tool competition dataset, and surpass the baseline by a significant margin, achieving an average F1 score of 0.74 against the baseline of 0.31, which is an improvement of 139%. A replication package, as well as the models themselves, are publicly available.

Code clone detection is a critical task in software engineering, aimed at identifying duplicated or similar code fragments within or across software systems. Traditional methods often fail to capture functional equivalence, particularly for semantic clones (Type 4), where code fragments implement identical functionality despite differing syntactic structures. Recent advances in large language models (LLMs) have shown promise in understanding code semantics. However, directly applying LLMs to code clone detection yields suboptimal results due to their sensitivity to syntactic differences. To address these challenges, we propose a novel two-stage framework that combines LLM-based screening with execution-based validation for detecting semantic clones in Python programs. In the first stage, an LLM evaluates code pairs to filter out obvious non-clones based on semantic analysis. For pairs not identified as clones, the second stage employs an execution-based validation approach, utilizing LLM-generated test inputs to assess functional equivalence through cross-execution validation. Our experimental evaluation demonstrates significant improvements in precision, recall, and F1-score compared to direct LLM-based detection, highlighting the framework's effectiveness in identifying semantic clones. Future work includes exploring cross-language clone detection and optimizing the framework for large-scale applications.

Code large language models (codeLLMs) have made significant strides in code generation. Most previous code-related benchmarks, which consist of various programming exercises along with the corresponding test cases, are used as a common measure to evaluate the performance and capabilities of code LLMs. However, the current code LLMs focus on synthesizing the correct code snippet, ignoring the alignment with human preferences, where the query should be sampled from the practical application scenarios and the model-generated responses should satisfy the human preference. To bridge the gap between the model-generated response and human preference, we present a rigorous human-curated benchmark CodeArena to emulate the complexity and diversity of real-world coding tasks, where 397 high-quality samples spanning 40 categories and 44 programming languages, carefully curated from user queries. Further, we propose a diverse synthetic instruction corpus SynCode-Instruct (nearly 20B tokens) by scaling instructions from the website to verify the effectiveness of the large-scale synthetic instruction fine-tuning, where Qwen2.5-SynCoder totally trained on synthetic instruction data can achieve top-tier performance of open-source code LLMs. The results find performance differences between execution-based benchmarks and CodeArena. Our systematic experiments of CodeArena on 40+ LLMs reveal a notable performance gap between open SOTA code LLMs (e.g. Qwen2.5-Coder) and proprietary LLMs (e.g., OpenAI o1), underscoring the importance of the human preference alignment.\url{https://codearenaeval.github.io/ }

Competitive programming benchmarks are widely used in scenarios such as programming contests and large language model assessments. However, the growing presence of duplicate or highly similar problems raises concerns not only about competition fairness, but also about the validity of competitive programming as a benchmark for model evaluation. In this paper, we propose a new problem -- similar question retrieval -- to address this issue. Due to the lack of both data and models, solving this problem is challenging. To this end, we introduce CPRet, a retrieval-oriented benchmark suite for competitive programming, covering four retrieval tasks: two code-centric (i.e., Text-to-Code and Code-to-Code) and two newly proposed problem-centric tasks (i.e., Problem-to-Duplicate and Simplified-to-Full), built from a combination of automatically crawled problem-solution data and manually curated annotations. Our contribution includes both high-quality training data and temporally separated test sets for reliable evaluation. In addition, we develop two task-specialized retrievers based on this dataset: CPRetriever-Code, trained with a novel Group-InfoNCE loss for problem-code alignment, and CPRetriever-Prob, fine-tuned for identifying problem-level similarity. Both models achieve strong results and are open-sourced for local use. Finally, we analyze LiveCodeBench and find that high-similarity problems inflate model pass rates and reduce differentiation, underscoring the need for similarity-aware evaluation in future benchmarks. Code and data are available at: https://github.com/coldchair/CPRet

Code Large Language Models (LLMs) demonstrate great versatility in adapting to various downstream tasks, including code generation and completion, as well as bug detection and fixing. However, Code LLMs often fail to capture existing coding standards, leading to the generation of code that conflicts with the required design patterns for a given project. As a result, developers must post-process to adapt the generated code to the project's design norms. In this work, we empirically investigate the biases of Code LLMs in software development. Through carefully designed experiments, we assess the models' understanding of design patterns across recognition, comprehension, and generation. Our findings reveal that biases in Code LLMs significantly affect the reliability of downstream tasks.

Large Language Models (LLMs) have shown potential to enhance software development through automated code generation and refactoring, reducing development time and improving code quality. This study empirically evaluates StarCoder2, an LLM optimized for code generation, in refactoring code across 30 open-source Java projects. We compare StarCoder2's performance against human developers, focusing on (1) code quality improvements, (2) types and effectiveness of refactorings, and (3) enhancements through one-shot and chain-of-thought prompting. Our results indicate that StarCoder2 reduces code smells by 20.1% more than developers, excelling in systematic issues like Long Statement and Magic Number, while developers handle complex, context-dependent issues better. One-shot prompting increases the unit test pass rate by 6.15% and improves code smell reduction by 3.52%. Generating five refactorings per input further increases the pass rate by 28.8%, suggesting that combining one-shot prompting with multiple refactorings optimizes performance. These findings provide insights into StarCoder2's potential and best practices for integrating LLMs into software refactoring, supporting more efficient and effective code improvement in real-world applications.

Code search aims to retrieve semantically relevant code snippets for a given natural language query. Recently, many approaches employing contrastive learning have shown promising results on code representation learning and greatly improved the performance of code search. However, there is still a lot of room for improvement in using contrastive learning for code search. In this paper, we propose CoCoSoDa to effectively utilize contrastive learning for code search via two key factors in contrastive learning: data augmentation and negative samples. Specifically, soft data augmentation is to dynamically masking or replacing some tokens with their types for input sequences to generate positive samples. Momentum mechanism is used to generate large and consistent representations of negative samples in a mini-batch through maintaining a queue and a momentum encoder. In addition, multimodal contrastive learning is used to pull together representations of code-query pairs and push apart the unpaired code snippets and queries. We conduct extensive experiments to evaluate the effectiveness of our approach on a large-scale dataset with six programming languages. Experimental results show that: (1) CoCoSoDa outperforms 14 baselines and especially exceeds CodeBERT, GraphCodeBERT, and UniXcoder by 13.3%, 10.5%, and 5.9% on average MRR scores, respectively. (2) The ablation studies show the effectiveness of each component of our approach. (3) We adapt our techniques to several different pre-trained models such as RoBERTa, CodeBERT, and GraphCodeBERT and observe a significant boost in their performance in code search. (4) Our model performs robustly under different hyper-parameters. Furthermore, we perform qualitative and quantitative analyses to explore reasons behind the good performance of our model.

There has been an increase of interest in code search using natural language. Assessing the performance of such code search models can be difficult without a readily available evaluation suite. In this paper, we present an evaluation dataset consisting of natural language query and code snippet pairs, with the hope that future work in this area can use this dataset as a common benchmark. We also provide the results of two code search models ([1] and [6]) from recent work. The evaluation dataset is available at https://github.com/facebookresearch/Neural-Code-Search-Evaluation-Dataset

Software development relies heavily on extensive unit testing, which makes the efficiency of automated Unit Test Generation (UTG) particularly important. However, most existing LLMs generate test cases one token at a time in each forward pass, which leads to inefficient UTG. Recently, diffusion LLMs (dLLMs) have emerged, offering promising parallel generation capabilities and showing strong potential for efficient UTG. Despite this advantage, their application to UTG is still constrained by a clear trade-off between efficiency and test quality, since increasing the number of tokens generated in each step often causes a sharp decline in the quality of test cases. To overcome this limitation, we present DiffTester, an acceleration framework specifically tailored for dLLMs in UTG. The key idea of DiffTester is that unit tests targeting the same focal method often share repetitive structural patterns. By dynamically identifying these common patterns through abstract syntax tree analysis during generation, DiffTester adaptively increases the number of tokens produced at each step without compromising the quality of the output. To enable comprehensive evaluation, we extend the original TestEval benchmark, which was limited to Python, by introducing additional programming languages including Java and C++. Extensive experiments on three benchmarks with two representative models show that DiffTester delivers significant acceleration while preserving test coverage. Moreover, DiffTester generalizes well across different dLLMs and programming languages, providing a practical and scalable solution for efficient UTG in software development. Code and data are publicly available at https://github.com/wellbeingyang/DLM4UTG-open .

Recently, the large language models (LLMs) have shown extraordinary ability in understanding natural language and generating programming code. It has been a common practice of software engineers to consult LLMs when encountering coding questions. Although efforts have been made to avoid syntax errors and align the code with the intended semantics, the reliability and robustness of the code generationfrom LLMs have not yet been thoroughly studied. The executable code is not equivalent to the reliable and robust code, especially in the context of real-world software development. The misuse of APIs in the generated code could lead to severe problem, such as resource leaks, program crashes. To make things worse, the users of LLM code generation services are actually the developers that are most vulnerable to these code that seems right -- They are always novice developers that are not familiar with the APIs that LLMs generate code for them. Therefore, they could hardly tell the misuse in the code generated by LLMs, which further facilitates the incorrect code applied in real-world software. Existing code evaluation benchmark and datasets focus on crafting small tasks such as programming questions in coding interviews, which however deviates from the problem that developers would ask LLM for real-world coding help. To fill the missing piece, in this work, we propose a dataset RobustAPI for evaluating the reliability and robustness of code generated by LLMs. We collect 1208 coding questions from StackOverflow on 24 representative Java APIs. We summarize thecommon misuse patterns of these APIs and evaluate them oncurrent popular LLMs. The evaluation results show that evenfor GPT-4, 62% of the generated code contains API misuses,which would cause unexpected consequences if the code isintroduced into real-world software.

Modern code generation has made significant strides in functional correctness and execution efficiency. However, these systems often overlook a critical dimension in real-world software development: maintainability. To handle dynamic requirements with minimal rework, we propose MaintainCoder as a pioneering solution. It integrates the Waterfall model, design patterns, and multi-agent collaboration to systematically enhance cohesion, reduce coupling, achieving clear responsibility boundaries and better maintainability. We also introduce MaintainCoder, a benchmark comprising requirement changes and novel dynamic metrics on maintenance efforts. Experiments demonstrate that existing code generation methods struggle to meet maintainability standards when requirements evolve. In contrast, MaintainCoder improves dynamic maintainability metrics by more than 60% with even higher correctness of initial codes. Furthermore, while static metrics fail to accurately reflect maintainability and even contradict each other, our proposed dynamic metrics exhibit high consistency. Our work not only provides the foundation for maintainable code generation, but also highlights the need for more realistic and comprehensive code generation research. Resources: https://github.com/IAAR-Shanghai/MaintainCoder.

Imagine a developer who can only change their last line of code, how often would they have to start writing a function from scratch before it is correct? Auto-regressive models for code generation from natural language have a similar limitation: they do not easily allow reconsidering earlier tokens generated. We introduce CodeFusion, a pre-trained diffusion code generation model that addresses this limitation by iteratively denoising a complete program conditioned on the encoded natural language. We evaluate CodeFusion on the task of natural language to code generation for Bash, Python, and Microsoft Excel conditional formatting (CF) rules. Experiments show that CodeFusion (75M parameters) performs on par with state-of-the-art auto-regressive systems (350M-175B parameters) in top-1 accuracy and outperforms them in top-3 and top-5 accuracy due to its better balance in diversity versus quality.

A critical part of creating code suggestion systems is the pre-training of Large Language Models on vast amounts of source code and natural language text, often of questionable origin or quality. This may contribute to the presence of bugs and vulnerabilities in code generated by LLMs. While efforts to identify bugs at or after code generation exist, it is preferable to pre-train or fine-tune LLMs on curated, high-quality, and compliant datasets. The need for vast amounts of training data necessitates that such curation be automated, minimizing human intervention. We propose an automated source code autocuration technique that leverages the complete version history of open-source software projects to improve the quality of training data. This approach leverages the version history of all OSS projects to identify training data samples that have been modified or have undergone changes in at least one OSS project, and pinpoint a subset of samples that include fixes for bugs or vulnerabilities. We evaluate this method using The Stack v2 dataset, and find that 17% of the code versions in the dataset have newer versions, with 17% of those representing bug fixes, including 2.36% addressing known CVEs. The deduplicated version of Stack v2 still includes blobs vulnerable to 6,947 known CVEs. Furthermore, 58% of the blobs in the dataset were never modified after creation, suggesting they likely represent software with minimal or no use. Misidentified blob origins present an additional challenge, as they lead to the inclusion of non-permissively licensed code, raising serious compliance concerns. By addressing these issues, the training of new models can avoid perpetuating buggy code patterns or license violations. We expect our results to inspire process improvements for automated data curation, with the potential to enhance the reliability of outputs generated by AI tools.

A coding agent is a language model wrapped in a harness: the system prompt, the tool set, and the context management that turn a chat model into something that can work inside a repository. Production harnesses ship releases daily, vendors advertise pass-rate gains from harness changes, and leaderboards mix harnesses freely. What is rarely measured is how much the harness itself moves the score when the model is held fixed. We run five models through three production harnesses, Claude Code, mini-SWE-agent, and OpenCode, on SWE-bench Verified, and rerun the same configurations to calibrate how much a score moves when nothing changes but the run. On 447 tasks and the two models we ran there, Claude Code and mini-SWE-agent, the heaviest and the lightest harness, are equivalent within five points. On a 45-task hard subset and five models, swapping the harness flips as many tasks as rerunning the same harness, 13% in both cases, and the tasks a harness wins in one run are not the tasks it wins in the next. The one harness effect that clears the noise is a loss, not a gain: OpenCode trails by up to 9 points on the large pool, and on one model half of that gap sits in runs its output cap cut short. What the harness does decide is the bill. With the same model, the same tasks, and one price list, cost per task differs by up to 3x across harnesses. The gap is set at the first call, by the preamble of system prompt and tool schemas each harness sends with every step, and scaled by the number of steps; per-step growth and per-call tool output differ far less. The provider's price for cached input scales the bill and does not reorder it. The rerun data also give the resolution a harness comparison needs: at the discordance we observe, 45 tasks catch a 13-point gap only half the time and no gap with 80% power, and 447 tasks resolve 5 points, still coarser than the gains many harness changes claim.

A coding agent works on repositories that can be far larger than its context window can hold. Prompt compressors and retrievers offer solutions to this problem, but patching an issue needs two things at once: the files that must change, and their code exactly as written, since the model must reproduce the lines it edits. Retrievers rank code by its similarity to the issue rather than by whether it must change, and compressors delete text to fit the budget. We show that at an equal token budget, an agent resolves more issues when the budget goes to choosing which files to show verbatim, as our simple selector CQ2-CARE does, than when it goes to pruning tokens or retrieving chunks. We fit every context to the same per-issue budget on 300 recent SWE-rebench issues and grade each patch with the benchmark's tests. With GPT-5.6 and Claude Opus 5, CQ2-CARE resolves 43.7% and 46.7% of the issues, 6.3 points more than the best of three compressors with either model, and 9.3 and 12.7 points more than the best of three retrievers. CQ2-CARE even resolves more issues than two methods trained for issue resolution, SweRank (by 0.7 and 1.7 points) and SWE-Pruner (by 2.0 and 7.3). Our analysis shows the defects of the baseline methods: retrievers often miss the files to edit, and compressors keep them but alter their text, so fewer patches apply. Exact-file selection needs no compression model and shows every line as the repository has it, so the model can quote the code it edits.

Code generation models have achieved impressive performance. However, they tend to be brittle as slight edits to a prompt could lead to very different generations; these robustness properties, critical for user experience when deployed in real-life applications, are not well understood. Most existing works on robustness in text or code tasks have focused on classification, while robustness in generation tasks is an uncharted area and to date there is no comprehensive benchmark for robustness in code generation. In this paper, we propose ReCode, a comprehensive robustness evaluation benchmark for code generation models. We customize over 30 transformations specifically for code on docstrings, function and variable names, code syntax, and code format. They are carefully designed to be natural in real-life coding practice, preserve the original semantic meaning, and thus provide multifaceted assessments of a model's robustness performance. With human annotators, we verified that over 90% of the perturbed prompts do not alter the semantic meaning of the original prompt. In addition, we define robustness metrics for code generation models considering the worst-case behavior under each type of perturbation, taking advantage of the fact that executing the generated code can serve as objective evaluation. We demonstrate ReCode on SOTA models using HumanEval, MBPP, as well as function completion tasks derived from them. Interesting observations include: better robustness for CodeGen over InCoder and GPT-J; models are most sensitive to syntax perturbations; more challenging robustness evaluation on MBPP over HumanEval.

As LLMs are increasingly used as judges in code applications, they should be evaluated in realistic interactive settings that capture partial context and ambiguous intent. We present TRACE (Tool for Rubric Analysis in Code Evaluation), a framework that evaluates LLM judges' ability to predict human preferences and automatically extracts rubric items to reveal systematic biases in how humans and models weigh each item. Across three modalities -- chat-based programming, IDE autocompletion, and instructed code editing -- we use TRACE to measure how well LLM judges align with developer preferences. Among 13 different models, the best judges underperform human annotators by 12-23%. TRACE identifies 35 significant sources of misalignment between humans and judges across interaction modalities, the majority of which correspond to existing software engineering code quality criteria. For example, in chat-based coding, judges are biased towards longer code explanations while humans prefer shorter ones. We find significant misalignment on the majority of existing code quality dimensions, showing alignment gaps between LLM judges and human preference in realistic coding applications.

Scene text editing is a challenging task that involves modifying or inserting specified texts in an image while maintaining its natural and realistic appearance. Most previous approaches to this task rely on style-transfer models that crop out text regions and feed them into image transfer models, such as GANs. However, these methods are limited in their ability to change text style and are unable to insert texts into images. Recent advances in diffusion models have shown promise in overcoming these limitations with text-conditional image editing. However, our empirical analysis reveals that state-of-the-art diffusion models struggle with rendering correct text and controlling text style. To address these problems, we propose DIFFSTE to improve pre-trained diffusion models with a dual encoder design, which includes a character encoder for better text legibility and an instruction encoder for better style control. An instruction tuning framework is introduced to train our model to learn the mapping from the text instruction to the corresponding image with either the specified style or the style of the surrounding texts in the background. Such a training method further brings our method the zero-shot generalization ability to the following three scenarios: generating text with unseen font variation, e.g., italic and bold, mixing different fonts to construct a new font, and using more relaxed forms of natural language as the instructions to guide the generation task. We evaluate our approach on five datasets and demonstrate its superior performance in terms of text correctness, image naturalness, and style controllability. Our code is publicly available. https://github.com/UCSB-NLP-Chang/DiffSTE