Commit History
24 days ago
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Genome Atlas: expanding Sankey view with annotated / not-annotated bars
Verified signatureReworks the Genome Atlas tree into an expanding Sankey diagram. **Sankey bars.** Each group is a bar split into annotated (green) and not-annotated (gray) assemblies. Two-tone flows carry both parts from a parent into its lineages. Bar and flow heights follow assembly counts within a column, and each column is rescaled to the full height so deep lineages stay legible. **Expands to the right.** Clicking a group adds its lineages as a new column instead of re-rooting the view, so every ancestor stays visible. Clicking a group in an earlier column replaces the columns after it. The selection is encoded as a path (`2759/33154/33208`, with `~offset` for expanded "Other lineages"), validated server-side, so the view stays stateless. Search and the shortcuts open the full lineage of a taxon. A selected lineage outside a column's top six is pinned into that column. The view auto-scrolls to the newest column. Other details: - Event payload key is `route`, because Gradio treats a `path` field…a0fc0a6 -
Rename Data Bank to Database throughout the Space
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26 days ago
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Publish full accession snapshot from bucket storage and synchronize atlas coverage
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Add Wet Lab Experiments and full-width equal navigation tabs
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Separate Genome atlas and Data bank into styled tabs
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Carry the genome atlas style through the annotation workspace
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Lead with an interactive eukaryotic coverage tree
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Color GenBank taxonomy by published annotation coverage
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Add GenBank assembly taxonomy tab and refreshable SQLite snapshot
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Combine strand decisions into one binary CDS track with background ties
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Add adjustable binary CDS viewer and schema-validation backlog item
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Add SQLite accession index and bounded on-demand bucket retrieval
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Show the full selected segment by default
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Deploy initial accession explorer with a bounded GenBank annotation sample
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initial commit
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