bioai-platform/backend/Dockerfile.worker

FROM python:3.11-slim

RUN apt-get update && apt-get install -y --no-install-recommends \
    build-essential gcc wget ca-certificates openbabel libgomp1 samtools && \
    rm -rf /var/lib/apt/lists/*

# AutoDock Vina
RUN wget -q "https://github.com/ccsb-scripps/AutoDock-Vina/releases/download/v1.2.7/vina_1.2.7_linux_x86_64" -O /usr/local/bin/vina && \
    chmod +x /usr/local/bin/vina

# minimap2 (for sequencing)
RUN wget -q https://github.com/lh3/minimap2/releases/download/v2.28/minimap2-2.28_x64-linux.tar.bz2 -O /tmp/minimap2.tar.bz2 && \
    tar xjf /tmp/minimap2.tar.bz2 -C /tmp --no-same-owner && \
    cp /tmp/minimap2-2.28_x64-linux/minimap2 /usr/local/bin/minimap2 && \
    chmod +x /usr/local/bin/minimap2 && \
    rm -rf /tmp/minimap2*

WORKDIR /app
COPY requirements.txt .
RUN pip install --no-cache-dir -r requirements.txt
COPY . .

CMD ["python", "-m", "app.worker"]