Spaces:

Samad14
/

bio-nexus-api

Running

App Files Files Community

bio-nexus-api / bioai-platform /backend /app /routers

230 kB

Ctrl+K

2 contributors

History: 150 commits

Samad14

feat: techspec additions — de novo tier-6 branch, structure export, page capture + final synthesis

4939f56 about 1 month ago

__init__.py
0 Bytes
Initial commit: Bio Nexus pipeline engine — BLAST + UniProt + AlphaFold + AI interpretation (Phase 1) 4 months ago
admet.py
7.15 kB
feat(admet): ProTox 3.0 ML toxicity prediction — backend client + endpoint, frontend ProTox tab, restored sidebar chevron about 2 months ago
ai.py
1.09 kB
fix: remove all rate limiters blocking pipeline runs 2 months ago
alignment.py
5.08 kB
Add global/local BLAST modes, full-length pairwise alignment view, standalone pairwise tool 2 months ago
api_keys.py
1.48 kB
feat: complete Phase 2 — API keys, share links, export, pipeline steps, guest upgrade 4 months ago
audit.py
2.2 kB
Fix unbounded _SESSION_EVENT_COUNTS dict leak (cap at 1000) 3 months ago
cache_stats.py
413 Bytes
feat: molecular docking (AutoDock Vina) + docs site + Sentry + cache stats + Phase 2 docs update 3 months ago
castp.py
4.35 kB
feat: optimize CASTp SASA with KDTree, add sequence input to CASTp + Structure Prep, ESMFold integration for unknown genes about 1 month ago
docking.py
31.4 kB
feat: techspec additions — de novo tier-6 branch, structure export, page capture + final synthesis about 1 month ago
domains.py
9.9 kB
feat(uniprot,domains): reviewed/organism filters + debounce/fast-path, PROSITE raw-sequence scan UI (3c,3d) 2 months ago
export.py
2.05 kB
feat: complete Phase 2 — API keys, share links, export, pipeline steps, guest upgrade 4 months ago
function_predict.py
3.35 kB
fix: stale job polling + 5min timeout + backend staleness guard 3 months ago
interactions.py
2.16 kB
test: comprehensive validation & fuzz testing with bug fixes 2 months ago
jobs.py
2.89 kB
fix: hydrate context_json from storage_url so frontend can render pipeline results 3 months ago
md.py
4.76 kB
feat(md): verified force field/solvent menu (ff14SB/ff15ipq/ff19SB/amberfb15/CHARMM36 x OBC1/OBC2/GBN2) with alanine-dipeptide createSystem startup probe; explicit errors for invalid combos; dynamic frontend menu 2 months ago
ngs.py
6.77 kB
chore: remove NGS rate limits about 2 months ago
pathways.py
7.52 kB
test: comprehensive validation & fuzz testing with bug fixes 2 months ago
phylo.py
15.5 kB
fix: use valid EBI email (example.com), remove PhyML build from Docker 4 months ago
pipeline_v2.py
41.4 kB
feat: techspec additions — de novo tier-6 branch, structure export, page capture + final synthesis about 1 month ago
pipelines.py
2.5 kB
fix(blast): honor program/db/max_hits params, accept DNA queries, poll cap 65 min 2 months ago
primers.py
9.59 kB
feat(primers): add NCBI gene search + sequence retrieval, oligo QC and in-silico PCR verification with recharts graphs about 2 months ago
profile.py
1.33 kB
feat: domains, interactions, primers, structure analysis, wizard, phylo tree, conservation 4 months ago
seq_tools.py
5.66 kB
feat(seq-tools): motif categories & structure overlay, dot-plot scoring & features, cross-tool links about 2 months ago
sequences.py
4.53 kB
fix: PDB IDs like 1TIM rejected as NCBI accessions causing 400 error 2 months ago
sequencing.py
5.16 kB
fix: remove all rate limiters blocking pipeline runs 2 months ago
share.py
1.93 kB
Fix share links, persist wizard jobs, add AI interpretation fallback, animate landing 2 months ago
structure_analysis.py
13.2 kB
test: comprehensive validation & fuzz testing with bug fixes 2 months ago
structure_export.py
4.82 kB
feat: techspec additions — de novo tier-6 branch, structure export, page capture + final synthesis about 1 month ago
structure_predict.py
4.32 kB
feat: add CASTp pockets, SWISS-MODEL, ESMFold + fix Dockerfiles about 1 month ago
structure_prep.py
13.2 kB
feat: techspec additions — de novo tier-6 branch, structure export, page capture + final synthesis about 1 month ago
structures.py
6.9 kB
Phase 0a: SSRF protection + auth on docking/sequencing, worker design doc 3 months ago
swissmodel.py
4.1 kB
feat: add CASTp pockets, SWISS-MODEL, ESMFold + fix Dockerfiles about 1 month ago
uniprot.py
3.37 kB
feat(uniprot,domains): reviewed/organism filters + debounce/fast-path, PROSITE raw-sequence scan UI (3c,3d) 2 months ago