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bio-nexus-api / bioai-platform /backend /app

715 kB

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History: 260 commits

Samad14

feat: techspec additions — de novo tier-6 branch, structure export, page capture + final synthesis

4939f56 about 1 month ago

ai
Fix pipeline MSA/AI stall, add SwissADME-parity ADMET panel, PubChem search, docking ligand data about 2 months ago
core
Deploy prep: Render config + Dockerfile, refactored backend auth flow, dashboard, landing page, error states, guest flow 4 months ago
data
fix: use subprocess.run(timeout=...) instead of asyncio subprocess for reliable Vina timeout 3 months ago
integrations
fix(pipeline): stop abandoning slow NCBI BLAST jobs + EBI fallback about 2 months ago
models
design.md + rules.md compliance: dark theme, teal palette, pulsing dot, Pydantic models, api.ts routing, config fixes, db/max_hits threading, Supabase migration 004 4 months ago
pipeline
feat: show PDB structures, GO terms, and expanded features in UniProt panel 2 months ago
routers
feat: techspec additions — de novo tier-6 branch, structure export, page capture + final synthesis about 1 month ago
services
feat: techspec additions — de novo tier-6 branch, structure export, page capture + final synthesis about 1 month ago
tools
feat: techspec additions — de novo tier-6 branch, structure export, page capture + final synthesis about 1 month ago
workers
fix(blast): honor program/db/max_hits params, accept DNA queries, poll cap 65 min 2 months ago
__init__.py

0 Bytes
Initial commit: Bio Nexus pipeline engine — BLAST + UniProt + AlphaFold + AI interpretation (Phase 1) 4 months ago
__main__.py

62 Bytes
Phase 0b: durable worker with FOR UPDATE SKIP LOCKED, per-type concurrency, separate container 3 months ago
config.py

1.79 kB
chore: increase daily rate limits for testing (50 global, 20 NGS) about 2 months ago
deps.py

1.02 kB
fix: remove all rate limiters blocking pipeline runs 2 months ago
logging_config.py

2.56 kB
fix: logging crash, md/function_predict ligand_smiles column fallback 3 months ago
main.py

11.3 kB
feat: techspec additions — de novo tier-6 branch, structure export, page capture + final synthesis about 1 month ago
middleware.py

1.06 kB
Phase 2: structured JSON logging, request ID middleware, enhanced health endpoint, Sentry breadcrumbs 3 months ago
worker.py

12.8 kB
fix: NGS pipeline stuck in queued - worker fallback + migration fix about 2 months ago