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bio-nexus-api / bioai-platform /backend /app /services

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History: 33 commits

Samad14

feat: techspec additions — de novo tier-6 branch, structure export, page capture + final synthesis

4939f56 about 1 month ago

__init__.py
0 Bytes
Initial commit: Bio Nexus pipeline engine — BLAST + UniProt + AlphaFold + AI interpretation (Phase 1) 4 months ago
artifact_storage.py
3.35 kB
Phase 0c: offload large artifacts to Supabase Storage (docking, pipeline, sequencing) 3 months ago
audit_engine.py
2.96 kB
fix: prevent GROQ restricted-key hang in interpret and audit steps 3 months ago
auth.py
2.47 kB
feat: complete Phase 2 — API keys, share links, export, pipeline steps, guest upgrade 4 months ago
blast_config.py
2.64 kB
fix(blast): honor program/db/max_hits params, accept DNA queries, poll cap 65 min 2 months ago
cache.py
2.2 kB
feat: molecular docking (AutoDock Vina) + docs site + Sentry + cache stats + Phase 2 docs update 3 months ago
de_novo.py
7.67 kB
feat: techspec additions — de novo tier-6 branch, structure export, page capture + final synthesis about 1 month ago
export.py
5.84 kB
Initial commit: Bio Nexus pipeline engine — BLAST + UniProt + AlphaFold + AI interpretation (Phase 1) 4 months ago
final_synthesis.py
8.72 kB
feat: techspec additions — de novo tier-6 branch, structure export, page capture + final synthesis about 1 month ago
identifier_resolution.py
16 kB
feat: techspec additions — de novo tier-6 branch, structure export, page capture + final synthesis about 1 month ago
ncbi_service.py
4.34 kB
feat(primers): add NCBI gene search + sequence retrieval, oligo QC and in-silico PCR verification with recharts graphs about 2 months ago
page_capture.py
4.93 kB
feat: techspec additions — de novo tier-6 branch, structure export, page capture + final synthesis about 1 month ago
pathway_enrichment.py
3.17 kB
fix(pathways): read enrichment results from projection response, add p-value and gene ratio 2 months ago
rate_limit.py
3.85 kB
chore: increase daily rate limits for testing (50 global, 20 NGS) about 2 months ago
sequence_utils.py
7.14 kB
fix: NGS fallback to Python aligner when native tools missing; add missing re import in sequence_utils about 1 month ago
ssrf.py
3.17 kB
feat: techspec additions — de novo tier-6 branch, structure export, page capture + final synthesis about 1 month ago
supabase.py
328 Bytes
Fix docking: add pdb_to_pdbqt_receptor() for protein PDBQT conversion 3 months ago
validators.py
2.1 kB
fix(blast): honor program/db/max_hits params, accept DNA queries, poll cap 65 min 2 months ago