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bio-nexus-api / bioai-platform /backend /tests

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History: 23 commits

Samad14

feat: techspec additions — de novo tier-6 branch, structure export, page capture + final synthesis

4939f56 about 1 month ago

__init__.py

0 Bytes
feat: add smoke-test suite — ADMET/MD/function/docking endpoint validation (27 tests) 3 months ago
conftest.py

4.56 kB
feat(md): real OpenMM production runs with accurate Ca RMSD 2 months ago
test_alignment_pairwise.py

8.52 kB
feat(alignment): pairwise global/local alignment via BLAST hit 'Align pair' (3a) 2 months ago
test_blast_comprehensive.py

19.7 kB
fix: harden BLAST pipeline against NCBI timeouts and server overload 2 months ago
test_blast_config.py

4.86 kB
fix(blast): honor program/db/max_hits params, accept DNA queries, poll cap 65 min 2 months ago
test_blast_resilience.py

9.78 kB
fix(pipeline): stop abandoning slow NCBI BLAST jobs + EBI fallback about 2 months ago
test_de_novo_branch.py

9.12 kB
feat: techspec additions — de novo tier-6 branch, structure export, page capture + final synthesis about 1 month ago
test_ebi_msa.py

3.05 kB
feat(alignment): multi-method MSA (clustalo/muscle/kalign/mafft/tcoffee) with method selector (3b) 2 months ago
test_feature_validation.py

41.2 kB
feat(md): temperature/KE, Rg and SASA traces; fix OpenMM in deployed image 2 months ago
test_fuzz_random.py

33 kB
test: comprehensive validation & fuzz testing with bug fixes 2 months ago
test_identifier_resolution.py

7.49 kB
feat: techspec additions — de novo tier-6 branch, structure export, page capture + final synthesis about 1 month ago
test_md_config.py

3.86 kB
feat(md): verified force field/solvent menu (ff14SB/ff15ipq/ff19SB/amberfb15/CHARMM36 x OBC1/OBC2/GBN2) with alanine-dipeptide createSystem startup probe; explicit errors for invalid combos; dynamic frontend menu 2 months ago
test_md_sim_unit.py

16.6 kB
fix(md): reflect OXT across C-CA axis so GBSA stops NaNing on Linux CPU 2 months ago
test_page_capture_synthesis.py

7.18 kB
feat: techspec additions — de novo tier-6 branch, structure export, page capture + final synthesis about 1 month ago
test_primers_qc.py

12.2 kB
feat(primers): add NCBI gene search + sequence retrieval, oligo QC and in-silico PCR verification with recharts graphs about 2 months ago
test_protox.py

6.34 kB
feat(admet): ProTox 3.0 ML toxicity prediction — backend client + endpoint, frontend ProTox tab, restored sidebar chevron about 2 months ago
test_scanprosite.py

4.41 kB
feat(uniprot,domains): reviewed/organism filters + debounce/fast-path, PROSITE raw-sequence scan UI (3c,3d) 2 months ago
test_seq_tools.py

17.9 kB
feat(results): in-app share dialog + self-normalized dotplot scoring about 2 months ago
test_smoke_admet.py

5.91 kB
feat: add smoke-test suite — ADMET/MD/function/docking endpoint validation (27 tests) 3 months ago
test_smoke_docking.py

2.91 kB
feat: add smoke-test suite — ADMET/MD/function/docking endpoint validation (27 tests) 3 months ago
test_smoke_function_predict.py

2.24 kB
feat: add smoke-test suite — ADMET/MD/function/docking endpoint validation (27 tests) 3 months ago
test_smoke_md.py

2.72 kB
feat: add smoke-test suite — ADMET/MD/function/docking endpoint validation (27 tests) 3 months ago
test_structure_export.py

5.42 kB
feat: techspec additions — de novo tier-6 branch, structure export, page capture + final synthesis about 1 month ago
test_structure_prep_validation.py

4.23 kB
feat: techspec additions — de novo tier-6 branch, structure export, page capture + final synthesis about 1 month ago
test_uniprot_search.py

3.71 kB
feat(uniprot,domains): reviewed/organism filters + debounce/fast-path, PROSITE raw-sequence scan UI (3c,3d) 2 months ago
test_vina_log.py

8.12 kB
feat(docking): Vina full-detail — parse 1.2.7 log (RMSD l.b./u.b., version, seed), RMSD table + run-config UI (3e) 2 months ago