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hackathon / tests /pipelines

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  1. feat(pipelines): compute_harmonization_diagnostics — long-format pre/post ComBat for viz⁠

    mekosotto +1: Claude Opus 4.7 (1M context)
    1068ed1

  1. feat(mri): log run params, metrics, and parquet artifact to MLflow

    mekosotto
    837970b

  2. feat(eeg): log run params, metrics, and parquet artifact to MLflow

    mekosotto
    0ce94e3

  3. feat(bbb): log run params, metrics, and parquet artifact to MLflow

    mekosotto
    cb5d63e

  4. test: cross-pipeline smoke run for all three modalities⁠

    mekosotto +1: Claude Sonnet 4.6
    cc8c965

  5. fix(mri): handle all-constant features; tighten variance threshold; reorder log⁠

    mekosotto +1: Claude Sonnet 4.6
    b18a079

  6. feat(mri): add run_pipeline orchestrator + CLI (NIfTI dir → ComBat Parquet)⁠

    mekosotto +1: Claude Sonnet 4.6
    7215c7f

  7. fix(mri): pin ComBat transitive deps; clarify np.round(14) intent; guard inputs⁠

    mekosotto +1: Claude Sonnet 4.6
    f7e54c4

  8. feat(mri): add harmonize_combat wrapper around neuroHarmonize.harmonizationLearn⁠

    mekosotto +1: Claude Opus 4.7 (1M context)
    c68ac12

  9. refactor(mri): bind ROI_STATS to callables; guard volume/mask shape mismatch⁠

    mekosotto +1: Claude Sonnet 4.6
    4d00e0f

  10. feat(mri): add extract_features_from_volume (8 ROI octants × 6 stats)⁠

    mekosotto +1: Claude Sonnet 4.6
    853cb9e

  11. fix(mri): warn on all-False mask; document 6-connectivity erosion caveat⁠

    mekosotto +1: Claude Sonnet 4.6
    782869f

  12. feat(mri): add mask_brain (intensity threshold + morphological opening)⁠

    mekosotto +1: Claude Sonnet 4.6
    5833bcb

  13. feat(mri): add is_valid_volume guard for NaN/inf/shape/dtype on 3-D arrays

    mekosotto
    3670eb8

  14. docs(eeg): correct float64 dtype claim; tighten test match; clarify CLI default⁠

    mekosotto +1: Claude Sonnet 4.6
    ea055f0

  15. feat(eeg): add run_pipeline orchestrator + CLI (FIF/EDF → Parquet)⁠

    mekosotto +1: Claude Sonnet 4.6
    c4c7642

  16. fix(eeg): NaN-clean features for flat channels; guard zero-size epochs; assert WARNING⁠

    mekosotto +1: Claude Opus 4.7 (1M context)
    0d591d4

  17. fix(eeg): validate epochs after filter to guarantee no NaN in feature table⁠

    mekosotto +1: Claude Sonnet 4.6
    c26c6a2

  18. feat(eeg): flatten 3D epochs into deterministic 2D feat_<ch>_<band|stat> table⁠

    mekosotto +1: Claude Sonnet 4.6
    32e13cf

  19. refactor(eeg): bind STATS labels to callables; document moment conventions⁠

    mekosotto +1: Claude Opus 4.7 (1M context)
    8da57c6

  20. feat(eeg): add compute_features_from_epoch (PSD bands + 5 statistics)⁠

    mekosotto +1: Claude Sonnet 4.6
    a1ab9ac

  21. refactor(eeg): tighten ICA docstring + log accuracy; extract EOG threshold constant⁠

    mekosotto +1: Claude Sonnet 4.6
    9931366

  22. feat(eeg): add remove_artifacts_with_ica with EOG correlation rejection⁠

    mekosotto +1: Claude Sonnet 4.6
    1a86a6e

  23. fix(eeg): guard bandpass_filter against inverted l_freq/h_freq; document picks=all

    mekosotto
    32359e5

  24. feat(eeg): add non-mutating bandpass_filter (default 1-40 Hz)⁠

    mekosotto +1: Claude Sonnet 4.6
    c743c0a

  25. fix(eeg): tighten is_valid_epoch signature; reject non-numeric dtype + -inf

    mekosotto
    e3c6c58

  26. feat(eeg): add is_valid_epoch guard for NaN/inf/shape/dtype⁠

    mekosotto +1: Claude Sonnet 4.6
    7e0ed24

  27. feat(bbb): switch processed output to Parquet for dtype preservation⁠

    mekosotto +1: Claude Sonnet 4.6
    915880e

  28. refactor(bbb): pin LF lineterminator; move DEFAULTs to top; reject dir output⁠

    mekosotto +1: Claude Sonnet 4.6
    32d3a5f

  29. feat(bbb): add run_pipeline orchestrator + CLI entrypoint with idempotent writes⁠

    mekosotto +1: Claude Sonnet 4.6
    48cf9c9

  30. fix(bbb): guard empty input; truncate index log; add KeyError + log tests⁠

    mekosotto +1: Claude Sonnet 4.6
    049a352

  31. feat(bbb): expand SMILES → Morgan FP into model-ready DataFrame with drift logging⁠

    mekosotto +1: Claude Sonnet 4.6
    b08a67c

  32. refactor(bbb): migrate to MorganGenerator API; consolidate test imports⁠

    mekosotto +1: Claude Sonnet 4.6
    80528e7

  33. feat(bbb): add Morgan fingerprint extraction with shape/dtype guarantees⁠

    mekosotto +1: Claude Sonnet 4.6
    b1bd8db

  34. refactor(bbb): tighten is_valid_smiles signature; document RDLogger global effect

    mekosotto
    0236e73

  35. feat(bbb): add SMILES validity guard with RDKit + test fixture

    mekosotto
    c4c8d1e

  36. chore: bootstrap NeuroBridge project skeleton

    mekosotto
    043ea3a