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sz2524337

Add HER2ST dataset ckpt for DEG 1000 case (Table 6 in the Appendix)

85913e6 verified 3 months ago

selected_gene_lists
Upload 9 files about 1 year ago
.gitattributes

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initial commit over 1 year ago
200_selected_hmhvg.txt

1.17 kB
Model weights & gene lists for the kidney experiment over 1 year ago
200_selected_hvg.txt

1.22 kB
Model weights & gene lists for the kidney experiment over 1 year ago
her2st_DEG_1000_ckpt0150000.pt
Detected Pickle imports (3)
- "collections.OrderedDict",
- "torch._utils._rebuild_tensor_v2",
- "torch.FloatStorage"
What is a pickle import?
575 MB
xet

Add HER2ST dataset ckpt for DEG 1000 case (Table 6 in the Appendix) 3 months ago
kidney_hmhvg_full_model.pt
Detected Pickle imports (20)
- "__builtin__.set",
- "torch.nn.modules.container.ModuleList",
- "torch.nn.modules.linear.Linear",
- "torch.nn.modules.activation.GELU",
- "torch.nn.modules.container.Sequential",
- "torch._utils._rebuild_parameter",
- "torch.nn.modules.dropout.Dropout",
- "torch._utils._rebuild_tensor_v2",
- "Stem.models.GeneJointEmbedding",
- "collections.OrderedDict",
- "Stem.models.StemModel",
- "timm.layers.mlp.Mlp",
- "torch.nn.modules.activation.SiLU",
- "Stem.models.FinalLayer",
- "torch.FloatStorage",
- "torch.nn.modules.linear.Identity",
- "Stem.models.DiTBlock",
- "timm.models.vision_transformer.Attention",
- "torch.nn.modules.normalization.LayerNorm",
- "Stem.models.TimestepEmbedder"
How to fix it?
143 MB
xet

Model weights & gene lists for the kidney experiment over 1 year ago
kidney_hvg_full_model.pt
Detected Pickle imports (20)
- "__builtin__.set",
- "torch.nn.modules.container.ModuleList",
- "torch.nn.modules.linear.Linear",
- "torch.nn.modules.activation.GELU",
- "torch.nn.modules.container.Sequential",
- "torch._utils._rebuild_parameter",
- "torch.nn.modules.dropout.Dropout",
- "torch._utils._rebuild_tensor_v2",
- "Stem.models.GeneJointEmbedding",
- "collections.OrderedDict",
- "Stem.models.StemModel",
- "timm.layers.mlp.Mlp",
- "torch.nn.modules.activation.SiLU",
- "Stem.models.FinalLayer",
- "torch.FloatStorage",
- "torch.nn.modules.linear.Identity",
- "Stem.models.DiTBlock",
- "timm.models.vision_transformer.Attention",
- "torch.nn.modules.normalization.LayerNorm",
- "Stem.models.TimestepEmbedder"
How to fix it?
143 MB
xet

Model weights & gene lists for the kidney experiment over 1 year ago

Detected Pickle imports (3)

Detected Pickle imports (20)

Detected Pickle imports (20)