| { |
| "encoder": "protbert_bfd", |
| "family": "hf_plm", |
| "target": "Rostlab/prot_bert_bfd", |
| "weights": "pretrained", |
| "rule": "final residue states, special tokens removed, masked mean over valid residues", |
| "env": "base", |
| "checkpoint": "Rostlab/prot_bert_bfd", |
| "checkpoint_revision": "6c5c8a55a52ff08a664dfd584aa1773f125a0487", |
| "dtype": "float32", |
| "hidden_size": 1024, |
| "n_layers": 30, |
| "n_parameters": 418881536, |
| "inputs_passed": "amino-acid sequence only", |
| "task": "ec_classification", |
| "date": "2026-09-20 11:40", |
| "seconds": 75.4, |
| "pooling": "masked mean over all residues of the chain", |
| "manifest": "manifest/ec_classification.csv", |
| "rows": "stage1 == 1", |
| "structure_coverage": "every row has a structure file whose sequence equals the task sequence (see manifest/coverage.csv)", |
| "n_per_split": { |
| "test": 3000, |
| "train": 6000, |
| "valid": 1500 |
| }, |
| "health": { |
| "n_rows": 10500, |
| "dim": 1024, |
| "nan_values": 0, |
| "all_zero_rows": 0, |
| "distinct_rows": 8868, |
| "numerical_rank": 1023, |
| "max_abs": 2.1483848094940186 |
| }, |
| "input_audit": { |
| "rel_change_jitter_1A": 0.0, |
| "rel_change_coord_swap": 0.0, |
| "rel_change_seq_shuffle": 0.4072423163663681, |
| "rel_change_rigid_motion": 0.0, |
| "verdict": "pass" |
| } |
| } |
