| { |
| "encoder": "saprot", |
| "family": "patched", |
| "target": "saprot_hf", |
| "weights": "pretrained", |
| "rule": "final hidden states at the L residue positions of AA+3Di tokens", |
| "env": "base", |
| "checkpoint": "westlake-repl/SaProt_650M_AF2", |
| "checkpoint_revision": "d9b9ad00ef61c0990e611b2b43f2231c7de24b38", |
| "n_parameters": 651242901, |
| "inputs_passed": "amino-acid track: real sequence; 3Di track: real tokens from mini3di on the structure; no pLDDT masking", |
| "patch": "patched/saprot_hf.py", |
| "task": "ec_classification", |
| "date": "2026-09-20 12:22", |
| "seconds": 386.3, |
| "pooling": "masked mean over all residues of the chain", |
| "manifest": "manifest/ec_classification.csv", |
| "rows": "stage1 == 1", |
| "structure_coverage": "every row has a structure file whose sequence equals the task sequence (see manifest/coverage.csv)", |
| "n_per_split": { |
| "test": 3000, |
| "train": 6000, |
| "valid": 1500 |
| }, |
| "health": { |
| "n_rows": 10500, |
| "dim": 1280, |
| "nan_values": 0, |
| "all_zero_rows": 0, |
| "distinct_rows": 10460, |
| "numerical_rank": 1279, |
| "max_abs": 1.4501705169677734 |
| }, |
| "input_audit": { |
| "rel_change_jitter_1A": 0.8705030813272382, |
| "rel_change_coord_swap": 0.4102216970171252, |
| "rel_change_seq_shuffle": 0.8413755808217256, |
| "rel_change_rigid_motion": 0.0, |
| "verdict": "pass" |
| } |
| } |
