| --- |
| tags: |
| - enzyme |
| - protein |
| - pytorch |
| - biology |
| --- |
| |
| # AlphaEnzyme checkpoints |
|
|
| PyTorch checkpoints for the AlphaEnzyme specificity, kinetics, and mutation tasks. The corresponding code is available in the [AlphaEnzyme repository](https://github.com/GENTEL-Lab/AlphaEnzyme). Input data are published separately at [GENTEL-Lab/AlphaEnzyme-data](https://huggingface.co/datasets/GENTEL-Lab/AlphaEnzyme-data). |
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| ## Files |
|
|
| | Task | Checkpoint | |
| | --- | --- | |
| | Specificity | `checkpoints/specificity/specificity_final.pt` | |
| | Kinetics | `checkpoints/kinetics/seed_1234/multitask_epoch18.pt` | |
| | Kinetics | `checkpoints/kinetics/seed_2026/multitask_epoch2.pt` | |
| | Kinetics | `checkpoints/kinetics/seed_3407/multitask_epoch16.pt` | |
| | Mutation | `checkpoints/mutation_final.pt` | |
|
|
| Download all files into the AlphaEnzyme project root: |
|
|
| ```bash |
| hf download GENTEL-Lab/AlphaEnzyme --local-dir . |
| ``` |
|
|
| This recreates the `checkpoints/` directory directly. To download a single checkpoint, provide its repository path to `hf download`. |
|
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| `SHA256SUMS` records the SHA-256 digest of each released checkpoint. The checkpoints are provided as PyTorch `.pt` files; follow the repository's task-specific loading code and configuration when using them. |
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