| # webProteinMPNN model assets |
|
|
| This directory contains browser-oriented ONNX conversions of the official |
| ProteinMPNN checkpoint families used by |
| https://github.com/MurrellGroup/webProteinMPNN. |
|
|
| ## Layout |
|
|
| Each model directory contains: |
|
|
| - `manifest.json`: dimensions, atom mode, filenames, SHA-256 integrity hashes, |
| upstream commit, and source checkpoint SHA-256. |
| - `encoder.onnx`: structure encoder with dynamic residue and neighbor axes. |
| - `decoder-step.onnx`: incremental autoregressive decoder. |
| - `decoder-full.onnx`: parallel decoder used for scoring and probabilities. |
| - `embedding.bin`: little-endian float32 sequence-token embedding table. |
|
|
| Available families and checkpoints are listed in `catalog.json`. ProteinMPNN |
| and solubleMPNN models consume N/CA/C/O backbone coordinates; CA models consume |
| CA-only coordinates. All bundles use the alphabet `ACDEFGHIKLMNPQRSTVWYX`. |
|
|
| The conversions were produced by `proteinmpnn-web/0.1.0` from upstream commit |
| `8907e6671bfbfc92303b5f79c4b5e6ce47cdef57`. They are designed for ONNX |
| Runtime Web 1.24.3 and can run with its WASM or WebGPU execution provider. |
|
|
| ## Attribution |
|
|
| The original models are ProteinMPNN by Dauparas et al., not models trained by |
| MurrellLab. See `LICENSE.ProteinMPNN` and `THIRD_PARTY_NOTICES.md` in this |
| directory, and the repository model card for intended use and limitations. |
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|
