adding carbon source to man2025

.gitignore

@@ -1,2 +1 @@
 chec_genome_map_bed/
-deprecated/

README.md

@@ -9,16 +9,14 @@ tags:
 - transcription-factors
 - gene-expression
 - binding
-- checseq
+- chec
 - perturbation
 - rnaseq
-- nascent-rnaseq
-- saccharomyces-cerevisiae
+- nascent rnaseq
 pretty_name: "Mahendrawada 2025 ChEC-seq and Nascent RNA-seq data"
-doi: https://doi.org/10.1038/s41586-025-08916-0
-citation: >-
-  Mahendrawada L, Warfield L, Donczew R et al. Low overlap of transcription factor DNA
-  binding and regulatory targets. Nature. 2025.
+size_categories:
+- 100K<n<1M
+
 experimental_conditions:
   # Mahendrawada et al 2025: "30 °C culture"
   temperature_celsius: 30
@@ -29,7 +27,6 @@ experimental_conditions:
     # Mahendrawada et al 2025: "synthetic complete (SC) media"
     name: synthetic_complete
     carbon_source:
-      # Carbon source is not specified in the paper; D-glucose is standard for SC media.
       - compound: D-glucose
     nitrogen_source:
       - compound: yeast_nitrogen_base
@@ -51,571 +48,6 @@ experimental_conditions:
         # Mahendrawada et al 2025: 2 μg/ml = 0.002 g/L
         concentration_percent: 0.0002
 
-features:
-- applies_to:
-  - chec_genome_map_meta
-  - chec_mahendrawada_m2025_af_combined_meta
-  - mahendrawada_chec_seq
-  - rna_seq
-  - rnaseq_reprocessed
-  - degron_counts_meta
-  - mnase_fusion_rnaseq_counts_meta
-  fields:
-  - name: regulator_locus_tag
-    dtype: string
-    description: Systematic gene name (ORF identifier) of the depleted transcription factor
-    role: regulator_identifier
-  - name: regulator_symbol
-    dtype: string
-    description: Standard gene symbol of the depleted transcription factor
-    role: regulator_identifier
-
-- applies_to:
-  - bp500_peaks
-  - intergenic_peaks 
-  - kang_peaks
-  - mindel_peaks
-  fields:
-    - name: n_replicates
-      dtype: int64
-      description: >-
-        Number of replicates in which at least one peak was called in this promoter.
-        0 means no peak was called in any replicate. A promoter is scored only when
-        this is 2 or more, so rows where it is 0 or 1 carry NA in nearest_score,
-        median_score and max_score.
-      role: quantitative_measure
-    - name: n_peaks
-      dtype: int64
-      description: >-
-        Number of peaks called in this promoter, summed across replicates, counted
-        before the two-replicate requirement is applied. It is therefore greater than
-        0 for some promoters that carry no scores, so `n_peaks > 0` is NOT equivalent
-        to "this promoter is scored" -- test `max_score` is not null for that.
-      role: quantitative_measure
-    - name: nearest_score
-      dtype: float64
-      description: >-
-        -log10(q-value) from HOMER peak calling, for the peak whose midpoint lies
-        closest to the TSS-proximal edge of the promoter. NA unless a peak was called
-        in at least two replicates.
-      role: quantitative_measure
-    - name: median_score
-      dtype: float64
-      description: >-
-        Median -log10(q-value) from HOMER peak calling over all peaks called in this
-        promoter across replicates. NA unless a peak was called in at least two
-        replicates.
-      role: quantitative_measure
-    - name: max_score
-      dtype: float64
-      description: >-
-        Maximum -log10(q-value) from HOMER peak calling over all peaks called in this
-        promoter across replicates. NA unless a peak was called in at least two
-        replicates. This is the field to test for whether a promoter is scored.
-      role: quantitative_measure
-
-- applies_to:
-  - chec_mahendrawada_m2025_af_replicates
-  - chec_mahendrawada_m2025_af_combined
-  - chec_mahendrawada_m2025_af_replicates_mindel
-  - chec_mahendrawada_m2025_af_combined_mindel
-  - chec_mahendrawada_m2025_af_replicates_start_codon_500bp
-  - chec_mahendrawada_m2025_af_combined_start_codon_500bp
-  - chec_mahendrawada_m2025_af_replicates_intergenic
-  - chec_mahendrawada_m2025_af_combined_intergenic
-  - mahendrawada_chec_seq
-  - bp500_peaks
-  - intergenic_peaks 
-  - kang_peaks
-  - mindel_peaks
-  - rna_seq
-  - rnaseq_reprocessed
-  - degron_counts
-  - mnase_fusion_rnaseq_counts
-  - wt_baseline_counts
-  - wt_degron_control_counts
-  fields:
-  - name: target_locus_tag
-    dtype: string
-    description: Systematic gene identifier for the target gene
-    role: target_identifier
-  - name: target_symbol
-    dtype: string
-    description: Standard gene symbol for the target gene
-    role: target_identifier
-
-- applies_to:
-  - chec_mahendrawada_m2025_af_replicates_mindel
-  - chec_mahendrawada_m2025_af_combined_mindel
-  fields:
-  - name: mindel_name
-    dtype: string
-    description: >-
-      Name of the target from the original authors of this promoter set
-    role: target_identifier
-  - name: promoter_sequence
-    dtype: string
-    description: >-
-      sequence of the promoter region for this target
-  - name: in_mahendrawada_features
-    dtype: boolean
-    description: >-
-      Whether this target is included in the mahendrawada_features dataset, which is
-      filtered for protein coding, non dubious ORFs
-  - name: promoter_exact_aligns
-    dtype: int64
-    description: >-
-      Description pending. This is from original authors of the promoters.
-      Need to check it
-
-- applies_to:
-  - chec_genome_map_meta
-  - chec_mahendrawada_m2025_af_combined_meta
-  fields:
-  - name: condition
-    dtype:
-      class_label:
-        names: ["standard", "SM", "WT", "WT_SM", "admut", "admut_SM", "cAD",
-                "cAD_SM", "dbdmut", "dbdmut_SM", "nAD", "nAD_SM", "ncAD",
-                "ncAD_SM", "30", "37", "galactose", "raffinose"]
-    description: >-
-      Experimental condition for this sample. The standard condition is
-      synthetic complete media at 30°C. Stress and induction conditions
-      are used for specific TF depletion experiments (Gcn4, Hsf1, Msn2, Gal4).
-      Gcn4 mutant derivative conditions (admut, cAD, dbdmut, nAD, ncAD) are
-      used only in ChEC-seq binding experiments, not degron depletion.
-    role: experimental_condition
-    definitions:
-      standard:
-        description: >-
-          Standard growth condition used for the majority of ChEC-seq experiments.
-        temperature_celsius: 30
-        growth_phase_at_harvest:
-          od600: 1.0
-        media:
-          # Methods: synthetic complete (SC) media per litre: 1.7g YNB (without
-          # ammonium sulfate or amino acids), 5g ammonium sulfate, 40ug/ml
-          # adenine sulfate, 0.6g amino acid dropout mix, supplemented with
-          # 2ug/ml uracil and 0.01% other amino acids
-          name: synthetic_complete
-          supplements:
-            - compound: yeast_nitrogen_base_without_ammonium_sulfate_without_amino_acids
-              concentration_g_per_L: 1.7
-            - compound: ammonium_sulfate
-              concentration_g_per_L: 5
-            - compound: adenine_sulfate
-              concentration_ug_per_mL: 40
-            - compound: amino_acid_dropout_mix
-              concentration_g_per_L: 0.6
-            - compound: uracil
-              concentration_ug_per_mL: 2
-      SM:
-        description: >-
-          Amino acid starvation stress induced by sulfometuron methyl (SM),
-          used for Gcn4 ChEC-seq and degron depletion experiments.
-        temperature_celsius: 30
-        growth_phase_at_harvest:
-          od600: 1.0
-        media:
-          # Methods: SC (-Ile-Val) media
-          name: synthetic_complete_minus_ile_val
-        chemical_treatment:
-          compound: sulfometuron_methyl
-          concentration_ug_per_mL: 0.5
-          duration_minutes: 60
-      WT:
-        description: >-
-          Wild-type Gcn4 strain grown under standard conditions without SM stress,
-          used as baseline in Gcn4 activation domain mutant ChEC-seq experiments.
-        temperature_celsius: 30
-        growth_phase_at_harvest:
-          od600: 1.0
-        media:
-          name: synthetic_complete
-          supplements:
-            - compound: yeast_nitrogen_base_without_ammonium_sulfate_without_amino_acids
-              concentration_g_per_L: 1.7
-            - compound: ammonium_sulfate
-              concentration_g_per_L: 5
-            - compound: adenine_sulfate
-              concentration_ug_per_mL: 40
-            - compound: amino_acid_dropout_mix
-              concentration_g_per_L: 0.6
-            - compound: uracil
-              concentration_ug_per_mL: 2
-      WT_SM:
-        description: >-
-          Wild-type Gcn4 strain grown under SM stress conditions, used as
-          induced baseline in Gcn4 activation domain mutant ChEC-seq experiments.
-        temperature_celsius: 30
-        growth_phase_at_harvest:
-          od600: 1.0
-        media:
-          name: synthetic_complete_minus_ile_val
-        chemical_treatment:
-          compound: sulfometuron_methyl
-          concentration_ug_per_mL: 0.5
-          duration_minutes: 60
-      admut:
-        description: >-
-          Gcn4 double activation domain deletion mutant (delta2-134, N-terminal
-          and central ADs deleted) under standard conditions without SM stress.
-        temperature_celsius: 30
-        growth_phase_at_harvest:
-          od600: 1.0
-        media:
-          name: synthetic_complete
-          supplements:
-            - compound: yeast_nitrogen_base_without_ammonium_sulfate_without_amino_acids
-              concentration_g_per_L: 1.7
-            - compound: ammonium_sulfate
-              concentration_g_per_L: 5
-            - compound: adenine_sulfate
-              concentration_ug_per_mL: 40
-            - compound: amino_acid_dropout_mix
-              concentration_g_per_L: 0.6
-            - compound: uracil
-              concentration_ug_per_mL: 2
-        gcn4_mutation: "deltaAD (delta2-134): deletion of both N-terminal and central activation domains"
-      admut_SM:
-        description: >-
-          Gcn4 double activation domain deletion mutant (delta2-134) under
-          SM stress conditions.
-        temperature_celsius: 30
-        growth_phase_at_harvest:
-          od600: 1.0
-        media:
-          name: synthetic_complete_minus_ile_val
-        chemical_treatment:
-          compound: sulfometuron_methyl
-          concentration_ug_per_mL: 0.5
-          duration_minutes: 60
-        gcn4_mutation: "deltaAD (delta2-134): deletion of both N-terminal and central activation domains"
-      cAD:
-        description: >-
-          Gcn4 central activation domain missense mutant (W120A, L123A, F124A)
-          under standard conditions without SM stress.
-        temperature_celsius: 30
-        growth_phase_at_harvest:
-          od600: 1.0
-        media:
-          name: synthetic_complete
-          supplements:
-            - compound: yeast_nitrogen_base_without_ammonium_sulfate_without_amino_acids
-              concentration_g_per_L: 1.7
-            - compound: ammonium_sulfate
-              concentration_g_per_L: 5
-            - compound: adenine_sulfate
-              concentration_ug_per_mL: 40
-            - compound: amino_acid_dropout_mix
-              concentration_g_per_L: 0.6
-            - compound: uracil
-              concentration_ug_per_mL: 2
-        gcn4_mutation: "cAD: W120A, L123A, F124A (central activation domain inactivated)"
-      cAD_SM:
-        description: >-
-          Gcn4 central activation domain missense mutant (W120A, L123A, F124A)
-          under SM stress conditions.
-        temperature_celsius: 30
-        growth_phase_at_harvest:
-          od600: 1.0
-        media:
-          name: synthetic_complete_minus_ile_val
-        chemical_treatment:
-          compound: sulfometuron_methyl
-          concentration_ug_per_mL: 0.5
-          duration_minutes: 60
-        gcn4_mutation: "cAD: W120A, L123A, F124A (central activation domain inactivated)"
-      dbdmut:
-        description: >-
-          Gcn4 DNA-binding domain triple mutant (N235A, R243A, S242A) under
-          standard conditions without SM stress.
-        temperature_celsius: 30
-        growth_phase_at_harvest:
-          od600: 1.0
-        media:
-          name: synthetic_complete
-          supplements:
-            - compound: yeast_nitrogen_base_without_ammonium_sulfate_without_amino_acids
-              concentration_g_per_L: 1.7
-            - compound: ammonium_sulfate
-              concentration_g_per_L: 5
-            - compound: adenine_sulfate
-              concentration_ug_per_mL: 40
-            - compound: amino_acid_dropout_mix
-              concentration_g_per_L: 0.6
-            - compound: uracil
-              concentration_ug_per_mL: 2
-        gcn4_mutation: "DBD: N235A, R243A, S242A (DNA-binding domain inactivated)"
-      dbdmut_SM:
-        description: >-
-          Gcn4 DNA-binding domain triple mutant (N235A, R243A, S242A) under
-          SM stress conditions.
-        temperature_celsius: 30
-        growth_phase_at_harvest:
-          od600: 1.0
-        media:
-          name: synthetic_complete_minus_ile_val
-        chemical_treatment:
-          compound: sulfometuron_methyl
-          concentration_ug_per_mL: 0.5
-          duration_minutes: 60
-        gcn4_mutation: "DBD: N235A, R243A, S242A (DNA-binding domain inactivated)"
-      nAD:
-        description: >-
-          Gcn4 N-terminal activation domain missense mutant (F67A, F69A, F97A,
-          F98A) under standard conditions without SM stress.
-        temperature_celsius: 30
-        growth_phase_at_harvest:
-          od600: 1.0
-        media:
-          name: synthetic_complete
-          supplements:
-            - compound: yeast_nitrogen_base_without_ammonium_sulfate_without_amino_acids
-              concentration_g_per_L: 1.7
-            - compound: ammonium_sulfate
-              concentration_g_per_L: 5
-            - compound: adenine_sulfate
-              concentration_ug_per_mL: 40
-            - compound: amino_acid_dropout_mix
-              concentration_g_per_L: 0.6
-            - compound: uracil
-              concentration_ug_per_mL: 2
-        gcn4_mutation: "nAD: F67A, F69A, F97A, F98A (N-terminal activation domain inactivated)"
-      nAD_SM:
-        description: >-
-          Gcn4 N-terminal activation domain missense mutant (F67A, F69A, F97A,
-          F98A) under SM stress conditions.
-        temperature_celsius: 30
-        growth_phase_at_harvest:
-          od600: 1.0
-        media:
-          name: synthetic_complete_minus_ile_val
-        chemical_treatment:
-          compound: sulfometuron_methyl
-          concentration_ug_per_mL: 0.5
-          duration_minutes: 60
-        gcn4_mutation: "nAD: F67A, F69A, F97A, F98A (N-terminal activation domain inactivated)"
-      ncAD:
-        description: >-
-          Gcn4 combined N-terminal and central activation domain missense mutant
-          (F67A, F69A, F97A, F98A, W120A, L123A, F124A) under standard conditions
-          without SM stress.
-        temperature_celsius: 30
-        growth_phase_at_harvest:
-          od600: 1.0
-        media:
-          name: synthetic_complete
-          supplements:
-            - compound: yeast_nitrogen_base_without_ammonium_sulfate_without_amino_acids
-              concentration_g_per_L: 1.7
-            - compound: ammonium_sulfate
-              concentration_g_per_L: 5
-            - compound: adenine_sulfate
-              concentration_ug_per_mL: 40
-            - compound: amino_acid_dropout_mix
-              concentration_g_per_L: 0.6
-            - compound: uracil
-              concentration_ug_per_mL: 2
-        gcn4_mutation: "ncAD: F67A, F69A, F97A, F98A, W120A, L123A, F124A (both ADs inactivated by missense)"
-      ncAD_SM:
-        description: >-
-          Gcn4 combined N-terminal and central activation domain missense mutant
-          (F67A, F69A, F97A, F98A, W120A, L123A, F124A) under SM stress conditions.
-        temperature_celsius: 30
-        growth_phase_at_harvest:
-          od600: 1.0
-        media:
-          name: synthetic_complete_minus_ile_val
-        chemical_treatment:
-          compound: sulfometuron_methyl
-          concentration_ug_per_mL: 0.5
-          duration_minutes: 60
-        gcn4_mutation: "ncAD: F67A, F69A, F97A, F98A, W120A, L123A, F124A (both ADs inactivated by missense)"
-      "30":
-        description: >-
-          No-heat-shock control condition for Hsf1 and Msn2 experiments;
-          incubated for 10 min at 30°C.
-        temperature_celsius: 30
-        incubation_duration_minutes: 10
-        growth_phase_at_harvest:
-          od600: 1.0
-        media:
-          name: synthetic_complete
-          supplements:
-            - compound: yeast_nitrogen_base_without_ammonium_sulfate_without_amino_acids
-              concentration_g_per_L: 1.7
-            - compound: ammonium_sulfate
-              concentration_g_per_L: 5
-            - compound: adenine_sulfate
-              concentration_ug_per_mL: 40
-            - compound: amino_acid_dropout_mix
-              concentration_g_per_L: 0.6
-            - compound: uracil
-              concentration_ug_per_mL: 2
-      "37":
-        description: >-
-          Heat shock condition for Hsf1 and Msn2 experiments. Equal volume of
-          44°C media added to 30°C culture, then incubated at 37°C for 10 min.
-        initial_temperature_celsius: 30
-        mixing_temperature_celsius: 44
-        final_temperature_celsius: 37
-        temperature_celsius: 37
-        incubation_duration_minutes: 10
-        growth_phase_at_harvest:
-          od600: 1.0
-        media:
-          name: synthetic_complete
-          supplements:
-            - compound: yeast_nitrogen_base_without_ammonium_sulfate_without_amino_acids
-              concentration_g_per_L: 1.7
-            - compound: ammonium_sulfate
-              concentration_g_per_L: 5
-            - compound: adenine_sulfate
-              concentration_ug_per_mL: 40
-            - compound: amino_acid_dropout_mix
-              concentration_g_per_L: 0.6
-            - compound: uracil
-              concentration_ug_per_mL: 2
-      galactose:
-        description: >-
-          Galactose induction condition for Gal4 experiments. Cells grown in
-          YEP-Raffinose then induced with 2% galactose for 2 hours prior to
-          RNA labelling.
-        temperature_celsius: 30
-        growth_phase_at_harvest:
-          od600: 1.0
-        media:
-          # Methods: YEP-Raffinose (1% yeast extract, 2% peptone, 2% raffinose)
-          # induced with 2% galactose for 2h
-          name: yeast_extract_peptone_raffinose_plus_galactose
-          carbon_source:
-            - compound: D-raffinose
-              concentration_percent: 2
-            - compound: D-galactose
-              concentration_percent: 2
-          nitrogen_source:
-            - compound: yeast_extract
-              concentration_percent: 1
-            - compound: peptone
-              concentration_percent: 2
-        galactose_induction_duration_hours: 2
-      raffinose:
-        description: >-
-          Uninduced raffinose condition for Gal4 experiments. Cells grown in
-          YEP-Raffinose without galactose addition.
-        temperature_celsius: 30
-        growth_phase_at_harvest:
-          od600: 1.0
-        media:
-          # Methods: YEP-Raffinose (1% yeast extract, 2% peptone, 2% raffinose)
-          name: yeast_extract_peptone_raffinose
-          carbon_source:
-            - compound: D-raffinose
-              concentration_percent: 2
-          nitrogen_source:
-            - compound: yeast_extract
-              concentration_percent: 1
-            - compound: peptone
-              concentration_percent: 2
-
-- applies_to:
-  - chec_mahendrawada_m2025_af_replicates_intergenic
-  - chec_mahendrawada_m2025_af_combined_intergenic
-  fields:
-  - name: ir_name
-    dtype: string
-    description: >-
-      Unique identifier of the intergenic region. See
-      yeast_genome_resources/intergenic_regions_metadata_5_1.csv for details on
-      the region (location, etc). Note that these intergenic regions are defined
-      as the region between the end of one ORF and the start of the next, and
-      are named according to the locus tags of the flanking ORFs (e.g.,
-      YAL001C-YAL002W). A intergenic  region is assigned to a promoter only when
-      the 5' end is continuous with the region.
-
-- applies_to:
-  - chec_mahendrawada_m2025_af_replicates
-  - chec_mahendrawada_m2025_af_combined
-  - chec_mahendrawada_m2025_af_replicates_mindel
-  - chec_mahendrawada_m2025_af_combined_mindel
-  - chec_mahendrawada_m2025_af_replicates_start_codon_500bp
-  - chec_mahendrawada_m2025_af_combined_start_codon_500bp
-  - chec_mahendrawada_m2025_af_replicates_intergenic
-  - chec_mahendrawada_m2025_af_combined_intergenic
-  fields:
-  - name: seqnames
-    dtype: string
-    description: Chromosome identifier (e.g., chrI, chrII)
-    role: coordinate
-  - name: start
-    dtype: int64
-    description: Promoter start position (1-based)
-    role: coordinate
-  - name: end
-    dtype: int64
-    description: Promoter end position (1-based, inclusive)
-    role: coordinate
-  - name: width
-    dtype: int64
-    description: Width of the peak in base pairs
-    role: coordinate
-  - name: strand
-    dtype: string
-    description: Strand orientation of the promoter (+ or -)
-    role: coordinate
-  - name: enrichment
-    dtype: float64
-    description: Enrichment score for the promoter (tagged TF sample vs free MNase control)
-    role: quantitative_measure
-  - name: poisson_pval
-    dtype: float64
-    description: P-value from Poisson distribution test for the enrichment
-    role: quantitative_measure
-  - name: log_poisson_pval
-    dtype: float64
-    description: Log-transformed Poisson p-value (using the log argument of the poisson function)
-    role: quantitative_measure
-  - name: hypergeometric_pval
-    dtype: float64
-    description: P-value from hypergeometric distribution test for the enrichment
-    role: quantitative_measure
-  - name: log_hypergeometric_pval
-    dtype: float64
-    description: Log-transformed hypergeometric p-value (using the log argument of the phyper function)
-    role: quantitative_measure
-  - name: poisson_qval
-    dtype: float64
-    description: FDR-adjusted q-value from Poisson test (multiple testing correction)
-    role: quantitative_measure
-  - name: hypergeometric_qval
-    dtype: float64
-    description: FDR-adjusted q-value from hypergeometric test (multiple testing correction)
-    role: quantitative_measure
-
-- applies_to:
-  - degron_counts_meta
-  - mnase_fusion_rnaseq_counts_meta
-  - wt_degron_control_counts_meta
-  - wt_baseline_counts_meta
-  fields:
-  - name: no_feature
-    dtype: float64
-    description: HTSeq count of reads not assigned to any feature
-    role: quantitative_measure
-  - name: ambiguous
-    dtype: float64
-    description: HTSeq count of reads mapping ambiguously to multiple features
-    role: quantitative_measure
-  - name: too_low_aQual
-    dtype: float64
-    description: HTSeq count of reads filtered due to low alignment quality
-    role: quantitative_measure
-  - name: alignment_not_unique
-    dtype: float64
-    description: HTSeq count of reads with non-unique alignments
-    role: quantitative_measure
-
 configs:
 - config_name: genomic_features
   description: Comprehensive genomic features and regulatory characteristics for yeast genes
@@ -637,46 +69,36 @@ configs:
     - name: chr
       dtype: string
       description: Chromosome number corresponding to gene
-      role: coordinate
     - name: strand
       dtype: string
       description: Strandedness of the gene (+ or -)
-      role: coordinate
     - name: start
-      dtype: float64
+      dtype: int64
       description: Start position of the ORF
-      role: coordinate
     - name: end
-      dtype: float64
+      dtype: int64
       description: End position of the ORF
-      role: coordinate
     - name: TSS
-      dtype: float64
+      dtype: int64
       description: Transcription start site based on Park et al., 2014 (doi:10.1093/nar/gkt1366)
-      role: coordinate
     - name: TATA_category
       dtype: string
       description: TATA box classification from Donczew et al., 2020 using consensus TATAWAW (doi:10.7554/eLife.50109)
     - name: expression
       dtype: float64
       description: Average signal normalized to gene length from Donczew et al., 2020 (doi:10.7554/eLife.50109)
-      role: quantitative_measure
     - name: +1 nucleosome
       dtype: float64
       description: Position of +1 nucleosome from Chereji et al., 2018 (doi:10.1186/S13059-018-1398-0)
-      role: quantitative_measure
     - name: -1 nucleosome
       dtype: float64
       description: Position of -1 nucleosome from Chereji et al., 2018 (doi:10.1186/S13059-018-1398-0)
-      role: quantitative_measure
     - name: NDR Center
       dtype: float64
       description: Center of nucleosome depleted region from Chereji et al., 2018 (doi:10.1186/S13059-018-1398-0)
-      role: quantitative_measure
     - name: NDR Width
       dtype: float64
       description: Width of nucleosome depletion region from Chereji et al., 2018 (doi:10.1186/S13059-018-1398-0)
-      role: quantitative_measure
     - name: tail-dependence
       dtype: string
       description: Tail classification based on Mediator tail dependence from Warfield L, Donczew R et al., 2022 (doi:10.1016/j.molcel.2022.09.016)
@@ -684,9 +106,8 @@ configs:
       dtype: string
       description: Coactivator classification based on TFIID and/or SAGA dependence from Donczew et al., 2020 (doi:10.7554/eLife.50109)
     - name: LCID_center
-      dtype: float64 
+      dtype: string
       description: Genes near boundaries of chromosomal interacting domains from Swygert et al., 2020 (doi:10.1016/j.molcel.2018.11.020)
-      role: quantitative_measure
     - name: Rossi_classes
       dtype: string
       description: Promoter classes from Rossi et al., 2021 (doi:10.1038/s41586-021-03314-8)
@@ -700,9 +121,8 @@ configs:
       dtype: string
       description: List of transcription factors bound to gene promoter (-400 to +200 bp from TSS; Homer peak calling)
     - name: number_of_bound_tfs
-      dtype: float64
+      dtype: int64
       description: Number of transcription factors bound to each promoter
-      role: quantitative_measure
     - name: locus_tag
       dtype: string
       description: Systematic gene identifier from yeast_genome_resources dataset
@@ -711,11 +131,7 @@ configs:
       description: Standard gene symbol from yeast_genome_resources dataset
 
 - config_name: mahendrawada_chec_seq
-  description: >-
-    ChEC-seq transcription factor binding data with peak scores
-    (original authors' processed data). Note that this is the only the standard
-    condition data for the 178 transcription factors in that condition in the
-    original authors' processed data.
+  description: ChEC-seq transcription factor binding data with peak scores (original authors' processed data)
   default: true
   dataset_type: annotated_features
   metadata_fields:
@@ -724,31 +140,36 @@ configs:
   data_files:
   - split: train
     path: chec_mahendrawada_2025.parquet
-  experimental_conditions:
-    # Every sample in this config is the standard condition.
-    condition: standard
   dataset_info:
     features:
     - name: sample_id
       dtype: integer
       description: >-
-        NOTE: this needs to be checked -- I think it should be deprecated/removed and 
-        replaced with the sample_id in the chec_genome_map_meta. This dataset was 
-        not used for awhile as the rest of the repo developed.
-      role: sample_id
+        unique identifier for a specific sample, which uniquely identifies one of the 178 TFs.
+        Across datasets in this repo, the a given sample_id identifies the same regulator.
+    - name: regulator_locus_tag
+      dtype: string
+      description: Systematic gene name (ORF identifier) of the transcription factor
+    - name: regulator_symbol
+      dtype: string
+      description: Standard gene symbol of the transcription factor
+    - name: target_locus_tag
+      dtype: string
+      description: Systematic gene name (ORF identifier) of the target gene
+    - name: target_symbol
+      dtype: string
+      description: Standard gene symbol of the target gene
     - name: peak_score
       dtype: float64
-      description: >-
-        ChEC signal around peak center (sum of ChEC signal from -150 to +150 bp
-        from peak summit) normalized to Drosophila spike-in control
-      role: quantitative_measure
+      description: ChEC signal around peak center (sum of ChEC signal from -150 to +150 bp from peak summit) normalized to Drosophila spike-in control
+    - name: processing_method
+      dtype: string
+      description: Method used for peak calling and quantification (original authors)
 
 - config_name: chec_genome_map_meta
-  description: >-
-    Sample-level metadata for ChEC-seq experiments including regulator information,
-    experimental conditions, and replicate structure
+  description: Sample-level metadata for ChEC-seq experiments including regulator information, experimental conditions, and replicate structure
   dataset_type: metadata
-  applies_to: ["chec_mahendrawada_m2025_af_replicates", "chec_mahendrawada_m2025_af_replicates_mindel", "chec_mahendrawada_m2025_af_replicates_start_codon_500bp", "chec_mahendrawada_m2025_af_replicates_intergenic", "chec_genome_map"]
+  applies_to: ["chec_mahendrawada_m2025_af_replicates", "chec_genome_map"]
   data_files:
   - split: train
     path: chec_genome_map_meta.parquet
@@ -756,31 +177,40 @@ configs:
     features:
     - name: sra_accession
       dtype: string
-      description: >-
-        SRA (Sequence Read Archive) accession identifier for this biological replicate.
-        Use this as the primary sample identifier for an individual replicate. Note
-        that there is also a `sample_id` column which identifies unique sets of
-        (regulator, condition).
+      description: SRA (Sequence Read Archive) accession identifier for this biological replicate
       role: sample_id
-    - name: sample_id
-      dtype: int64
-      description: >-
-        A unique identifier for a regulator/condition (replicate set). This is the
-        same sample_id that is used for the *_combined_* samples and can be used to
-        related sra_accessions to replicate sets in that data.
-      role: secondary_sample_id
     - name: mahendrawada_symbol
       dtype: string
       description: Transcription factor symbol as reported in Mahendrawada et al. 2025
     - name: replicate
       dtype: string
       description: Biological replicate identifier. One of A,B,C. All have 3 replicates
+    - name: condition
+      dtype:
+        class_label:
+          names: [
+            "standard", "SM", "WT", "WT_SM", "admut", "admut_SM", 
+            "cAD", "cAD_SM", "dbdmut", "dbdmut_SM", "nAD", "nAD_SM", 
+            "ncAD", "ncAD_SM", "30", "37", "galactose", "raffinose"]
+      description: Experimental condition for this sample
+      role: experimental_condition
+    - name: regulator_locus_tag
+      dtype: string
+      description: Systematic gene name (ORF identifier) of the depleted transcription factor
+      role: regulator_identifier
+    - name: regulator_symbol
+      dtype: string
+      description: Standard gene symbol of the depleted transcription factor
+      role: regulator_identifier
+    - name: sample_id
+      dtype: int
+      description: Unique identifier combining regulator, condition, and replicates (used in combined datasets)
 
 - config_name: chec_genome_map
   description: >-
     ChEC-seq data reprocessed in the Brent Lab. See scripts/ for more details. These are bed format,
     therefore intervals are 0-based, half open, eg chrI:0-10 in a bed format would be chr:1-10 in
-    IGV which is 1-indexed, closed interval. See https://github.com/BrentLab/checseq_promoter_enrichment_slurm_pipeline/tree/main/promoter_enrichment for scripts for creating the genome map files from alignments.
+    IGV which is 1-indexed, closed interval
   dataset_type: genome_map
   data_files:
   - split: train
@@ -797,26 +227,22 @@ configs:
     - name: chr
       dtype: string
       description: Chromosome identifier (e.g., chrI, chrII, chrXVI)
-      role: coordinate
     - name: start
-      dtype: float64
+      dtype: int
       description: Feature start position (0-based half open)
-      role: coordinate
     - name: end
-      dtype: float64
+      dtype: int
       description: Feature end position (0-based, half open)
-      role: coordinate
     - name: name
       dtype: string
       description: This stores the character `.`, one of the accepted characters for NA in bed6
     - name: score
-      dtype: float64
+      dtype: int
       description: The depth of 5 prime read ends at this location
       role: quantitative_measure
     - name: strand
       dtype: string
       description: Strand orientation of the mapped fragment from which the 5 prime end originates (+ or -)
-      role: coordinate
 
 - config_name: chec_genome_map_control_meta
   description: Sample-level metadata for ChEC free MNase experiments
@@ -830,7 +256,6 @@ configs:
     - name: sra_accession
       dtype: string
       description: SRA (Sequence Read Archive) accession identifier for this biological replicate
-      role: sample_id
     - name: replicate
       dtype: string
       description: Biological replicate identifier. One of A,B,C. All have 3 replicates
@@ -856,38 +281,26 @@ configs:
     - name: chr
       dtype: string
       description: Chromosome identifier (e.g., chrI, chrII, chrXVI)
-      role: coordinate
     - name: start
-      dtype: float64
+      dtype: int
       description: Feature start position (0-based half open)
-      role: coordinate
     - name: end
-      dtype: float64
+      dtype: int
       description: Feature end position (0-based, half open)
-      role: coordinate
     - name: name
       dtype: string
       description: This stores the character `.`, one of the accepted characters for NA in bed6
     - name: score
-      dtype: float64
+      dtype: int
       description: The depth of 5 prime read ends at this location
       role: quantitative_measure
     - name: strand
       dtype: string
       description: Strand orientation of the mapped fragment from which the 5 prime end originates (+ or -)
-      role: coordinate
       
 - config_name: chec_mahendrawada_m2025_af_replicates
-  description: >-
-    Promoter significance scores using the Yiming Kang promoters, calculated using the mahendrawada_annotated_features.R. This is a reprocessing of the original authors'
-    data which counts all tags over a specific promoter region in the TF tagged sample
-    and calculates an enrichment relative to the free MNase control.
+  description: ChEC-seq annotated features at biological replicate level with binding peaks and statistical significance metrics
   dataset_type: annotated_features
-  genome_resources:
-    region_sets:
-      Kang:
-        path: https://huggingface.co/datasets/BrentLab/yeast_genome_resources/blob/main/yiming_promoters.bed
-        join_column: target_locus_tag
   data_files:
   - split: train
     path: chec_mahendrawada_m2025_af_replicates.parquet
@@ -897,228 +310,90 @@ configs:
       dtype: string
       description: SRA (Sequence Read Archive) accession identifier for this biological replicate
       role: sample_id
-    - name: score
-      dtype: float64
-      description: >-
-        Score carried over from the promoter-set BED file (yiming_promoters.bed in
-        BrentLab/yeast_genome_resources, column 5). Every value is 100, so it is
-        likely a placeholder and carries no information about binding.
-
-- config_name: bp500_peaks
-  description: >-
-    HOMER peak calls according to the authors' published protocol, reproduced with the
-    pipeline at https://github.com/BrentLab/checseq_promoter_enrichment_slurm_pipeline
-    at commit cc6c050. The peaks were intersected with the promoters defined as 500bp
-    upstream of the start codon, and scored, by scripts/mahendrawada_peak_analysis.R in
-    this repository.
-
-    Every promoter in the set is reported for every sample, whether or not a peak was
-    called in it, so each sample contributes the same number of rows. A promoter is
-    scored by the nearest, median and max peak score (-log10(q-value) from HOMER) only
-    where a peak was called in at least 2 replicates; otherwise those three columns are
-    NA. The NA rows are therefore measurements, not missing data: they record that the
-    promoter was examined and nothing passing the threshold was found. Use n_replicates
-    and n_peaks to distinguish a promoter with no peak at all from one whose only peak
-    failed the two-replicate requirement.
-  dataset_type: annotated_features
-  data_files:
-  - split: train
-    path: bp500_peaks.parquet
-  genome_resources:
-    region_sets:
-      start_codon_500bp:
-        path: https://huggingface.co/datasets/BrentLab/yeast_genome_resources/blob/main/start_codon_500bp_upstream_promoters.bed
-        join_column: target_locus_tag
-  dataset_info:
-    features:
-    - name: sample_id
-      dtype: int64
-      description: Unique identifier for a sample.
-      role: sample_id
-
-- config_name: intergenic_peaks
-  description: >-
-    HOMER peak calls according to the authors' published protocol, reproduced with the
-    pipeline at https://github.com/BrentLab/checseq_promoter_enrichment_slurm_pipeline
-    at commit cc6c050. The peaks were intersected with the promoters defined as the
-    intergenic regions from SGD 5-1, and scored, by scripts/mahendrawada_peak_analysis.R
-    in this repository.
-
-    A region is quantified for a gene only where that gene's 5' end lies downstream of
-    it, so each gene is scored by the single intergenic region immediately upstream of
-    it. This gives 6040 promoters.
-
-    Every promoter in the set is reported for every sample, whether or not a peak was
-    called in it, so each sample contributes the same number of rows. A promoter is
-    scored by the nearest, median and max peak score (-log10(q-value) from HOMER) only
-    where a peak was called in at least 2 replicates; otherwise those three columns are
-    NA. The NA rows are therefore measurements, not missing data: they record that the
-    promoter was examined and nothing passing the threshold was found. Use n_replicates
-    and n_peaks to distinguish a promoter with no peak at all from one whose only peak
-    failed the two-replicate requirement.
-  dataset_type: annotated_features
-  data_files:
-  - split: train
-    path: intergenic_peaks.parquet
-  genome_resources:
-    region_sets:
-      intergenic:
-        path: https://huggingface.co/datasets/BrentLab/yeast_genome_resources/blob/main/intergenic_regions_metadata_5_1.csv
-        join_column: ir_name
-  dataset_info:
-    features:
-    - name: sample_id
+    - name: target_locus_tag
+      dtype: string
+      description: Systematic gene identifier for the target gene
+      role: target_identifier
+    - name: target_symbol
+      dtype: string
+      description: Standard gene symbol for the target gene
+      role: target_identifier
+    - name: seqnames
+      dtype: string
+      description: Chromosome identifier (e.g., chrI, chrII)
+    - name: start
       dtype: int64
-      description: Unique identifier for a sample.
-      role: sample_id
-
-- config_name: kang_peaks
-  description: >-
-    HOMER peak calls according to the authors' published protocol, reproduced with the
-    pipeline at https://github.com/BrentLab/checseq_promoter_enrichment_slurm_pipeline
-    at commit cc6c050. The peaks were intersected with the promoters defined as 700bp
-    upstream of the start codon, truncated by upstream features, and scored, by
-    scripts/mahendrawada_peak_analysis.R in this repository.
-
-    Every promoter in the set is reported for every sample, whether or not a peak was
-    called in it, so each sample contributes the same number of rows. A promoter is
-    scored by the nearest, median and max peak score (-log10(q-value) from HOMER) only
-    where a peak was called in at least 2 replicates; otherwise those three columns are
-    NA. The NA rows are therefore measurements, not missing data: they record that the
-    promoter was examined and nothing passing the threshold was found. Use n_replicates
-    and n_peaks to distinguish a promoter with no peak at all from one whose only peak
-    failed the two-replicate requirement.
-  dataset_type: annotated_features
-  data_files:
-  - split: train
-    path: kang_peaks.parquet
-  genome_resources:
-    region_sets:
-      Kang:
-        path: https://huggingface.co/datasets/BrentLab/yeast_genome_resources/blob/main/yiming_promoters.bed
-        join_column: target_locus_tag
-  dataset_info:
-    features:
-    - name: sample_id
+      description: Peak start position (0-based coordinate)
+    - name: end
       dtype: int64
-      description: Unique identifier for a sample.
-      role: sample_id
-
-- config_name: mindel_peaks
-  description: >-
-    HOMER peak calls according to the authors' published protocol, reproduced with the
-    pipeline at https://github.com/BrentLab/checseq_promoter_enrichment_slurm_pipeline
-    at commit cc6c050. The peaks were intersected with the promoters defined by Mindel
-    et al. (see huggingface/BrentLab/yeast_genome_resources), and scored, by
-    scripts/mahendrawada_peak_analysis.R in this repository.
-
-    Every promoter in the set is reported for every sample, whether or not a peak was
-    called in it, so each sample contributes the same number of rows. A promoter is
-    scored by the nearest, median and max peak score (-log10(q-value) from HOMER) only
-    where a peak was called in at least 2 replicates; otherwise those three columns are
-    NA. The NA rows are therefore measurements, not missing data: they record that the
-    promoter was examined and nothing passing the threshold was found. Use n_replicates
-    and n_peaks to distinguish a promoter with no peak at all from one whose only peak
-    failed the two-replicate requirement.
-  dataset_type: annotated_features
-  data_files:
-  - split: train
-    path: mindel_peaks.parquet
-  genome_resources:
-    region_sets:
-      Mindel:
-        path: https://huggingface.co/datasets/BrentLab/yeast_genome_resources/blob/main/mindel_promoters.csv.gz
-        join_column: target_locus_tag
-  dataset_info:
-    features:
-    - name: sample_id
+      description: Peak end position (0-based, exclusive)
+    - name: width
       dtype: int64
-      description: Unique identifier for a sample.
-      role: sample_id
-
-- config_name: chec_mahendrawada_m2025_af_replicates_mindel
-  description: >-
-    Promoter significance scores using the Mindel promoters, calculated using the mahendrawada_annotated_features.R. This is a reprocessing of the original authors'
-    data which counts all tags over a specific promoter region in the TF tagged sample
-    and calculates an enrichment relative to the free MNase control.
-  dataset_type: annotated_features
-  genome_resources:
-    region_sets:
-      Mindel:
-        path: https://huggingface.co/datasets/BrentLab/yeast_genome_resources/blob/main/mindel_promoters.csv.gz
-        join_column: target_locus_tag
-  data_files:
-  - split: train
-    path: chec_mahendrawada_m2025_af_replicates_mindel.parquet
-  dataset_info:
-    features:
-    - name: sra_accession
-      dtype: string
-      description: SRA (Sequence Read Archive) accession identifier for this biological replicate
-      role: sample_id
-
-- config_name: chec_mahendrawada_m2025_af_replicates_start_codon_500bp
-  description: >-
-    Promoter significance scores using promoters defined as 500bp upstream of the 
-    start codon. See scripts/mahendrawada_annotated_features.R. This is a reprocessing
-    of the original authors' data which counts all tags over a specific promoter
-    region in the TF tagged sample and calculates an enrichment relative to the free
-    MNase control.
-  dataset_type: annotated_features
-  genome_resources:
-    region_sets:
-      start_codon_500bp:
-        path: https://huggingface.co/datasets/BrentLab/yeast_genome_resources/blob/main/start_codon_500bp_upstream_promoters.bed
-        join_column: target_locus_tag
-  data_files:
-  - split: train
-    path: chec_mahendrawada_m2025_af_replicates_start_codon_500bp.parquet
-  dataset_info:
-    features:
-    - name: sra_accession
-      dtype: string
-      description: SRA (Sequence Read Archive) accession identifier for this biological replicate
-      role: sample_id
-
-- config_name: chec_mahendrawada_m2025_af_replicates_intergenic
-  description: >-
-    Promoter significance scores using intergenic regions that are continuous with 
-    the 5' end of a target feature. See scripts/mahendrawada_annotated_features.R.
-    This is a reprocessing of the original authors' data which counts all tags over a
-    specific promoter region in the TF tagged sample and calculates an enrichment
-    relative to the free MNase control.
-  dataset_type: annotated_features
-  genome_resources:
-    region_sets:
-      intergenic:
-        path: https://huggingface.co/datasets/BrentLab/yeast_genome_resources/blob/main/intergenic_regions_metadata_5_1.csv
-        join_column: ir_name
-  data_files:
-  - split: train
-    path: chec_mahendrawada_m2025_af_replicates_intergenic.parquet
-  dataset_info:
-    features:
-    - name: sra_accession
+      description: Width of the peak in base pairs
+    - name: strand
       dtype: string
-      description: SRA (Sequence Read Archive) accession identifier for this biological replicate
-      role: sample_id
+      description: Strand orientation (+ or -)
+    - name: enrichment
+      dtype: float64
+      description: Enrichment score for the binding peak
+      role: quantitative_measure
+    - name: poisson_pval
+      dtype: float64
+      description: P-value from Poisson distribution test for peak significance
+      role: quantitative_measure
+    - name: log_poisson_pval
+      dtype: float64
+      description: Log-transformed Poisson p-value
+      role: quantitative_measure
+    - name: hypergeometric_pval
+      dtype: float64
+      description: P-value from hypergeometric distribution test for peak significance
+      role: quantitative_measure
+    - name: log_hypergeometric_pval
+      dtype: float64
+      description: Log-transformed hypergeometric p-value
+      role: quantitative_measure
+    - name: poisson_qval
+      dtype: float64
+      description: FDR-adjusted q-value from Poisson test (multiple testing correction)
+      role: quantitative_measure
+    - name: hypergeometric_qval
+      dtype: float64
+      description: FDR-adjusted q-value from hypergeometric test (multiple testing correction)
+      role: quantitative_measure
 
 - config_name: chec_mahendrawada_m2025_af_combined_meta
   description: Sample-level metadata for combined ChEC-seq experiments with regulator information and experimental conditions
   dataset_type: metadata
-  applies_to: ["chec_mahendrawada_m2025_af_combined","chec_mahendrawada_m2025_af_combined_mindel", "chec_mahendrawada_m2025_af_combined_start_codon_500bp", "chec_mahendrawada_m2025_af_combined_intergenic", "bp500_peaks", "intergenic_peaks", "kang_peaks", "mindel_peaks"]
+  applies_to: ["chec_mahendrawada_m2025_af_combined"]
   data_files:
   - split: train
     path: chec_mahendrawada_m2025_af_combined_meta.parquet
   dataset_info:
     features:
     - name: sample_id
-      dtype: int64
+      dtype: string
       description: Unique identifier combining regulator, condition, and replicates
-      role: sample_id
+    - name: regulator_locus_tag
+      dtype: string
+      description: Systematic gene name (ORF identifier) of the depleted transcription factor
+      role: regulator_identifier
+    - name: regulator_symbol
+      dtype: string
+      description: Standard gene symbol of the depleted transcription factor
+      role: regulator_identifier
     - name: mahendrawada_symbol
       dtype: string
       description: Transcription factor symbol as reported in Mahendrawada et al. 2025
+    - name: condition
+      dtype:
+        class_label:
+          names: [
+            "standard", "SM", "WT", "WT_SM", "admut", "admut_SM", 
+            "cAD", "cAD_SM", "dbdmut", "dbdmut_SM", "nAD", "nAD_SM", 
+            "ncAD", "ncAD_SM", "30", "37", "galactose", "raffinose"]
+      description: Experimental condition for this sample
+      role: experimental_condition
 
 - config_name: chec_mahendrawada_m2025_af_combined
   description: >-
@@ -1127,97 +402,64 @@ configs:
   data_files:
   - split: train
     path: chec_mahendrawada_m2025_af_combined.parquet
-  genome_resources:
-    region_sets:
-      Kang:
-        path: https://huggingface.co/datasets/BrentLab/yeast_genome_resources/blob/main/yiming_promoters.bed
-        join_column: target_locus_tag
   dataset_info:
     features:
     - name: sample_id
-      dtype: int64
-      description: >-
-        Unique identifier for a sample. Each sample is the combination of replicates
-        for a given regulator and condition prior to having promoter enrichment
-        and significance calculated. 
-      role: sample_id
-    - name: score
-      dtype: float64
+      dtype: string
       description: >-
-        Score carried over from the promoter-set BED file (yiming_promoters.bed in
-        BrentLab/yeast_genome_resources, column 5). Every value is 100, so it is
-        likely a placeholder and carries no information about binding.
-
-- config_name: chec_mahendrawada_m2025_af_combined_mindel
-  description: >-
-    Brent Lab reprocessed data from Mahendrawada 2025. See scripts/ for more details.
-  dataset_type: annotated_features
-  genome_resources:
-    region_sets:
-      Mindel:
-        path: https://huggingface.co/datasets/BrentLab/yeast_genome_resources/blob/main/mindel_promoters.csv.gz
-        join_column: target_locus_tag
-  data_files:
-  - split: train
-    path: chec_mahendrawada_m2025_af_combined_mindel.parquet
-  dataset_info:
-    features:
-    - name: sample_id
+        Unique identifier for a specific regulator/condition. These are made up of the replicates marked as
+        `combine == TRUE` in the replicate level metadata
+    - name: target_locus_tag
+      dtype: string
+      description: Systematic gene identifier for the target gene
+      role: target_identifier
+    - name: target_symbol
+      dtype: string
+      description: Standard gene symbol for the target gene
+      role: target_identifier
+    - name: seqnames
+      dtype: string
+      description: Chromosome identifier (e.g., chrI, chrII)
+    - name: start
       dtype: int64
-      description: >-
-        Unique identifier for a sample. Each sample is the combination of replicates
-        for a given regulator and condition prior to having promoter enrichment
-        and significance calculated. 
-      role: sample_id
-
-- config_name: chec_mahendrawada_m2025_af_combined_start_codon_500bp
-  description: >-
-    Annotated feature dataset with binding score and statistics performed on combined
-    replicates for a single sample per regulator/condition, using promoters defined as
-    500bp upstream of the start codon. See scripts/mahendrawada_annotated_features.R.
-  dataset_type: annotated_features
-  genome_resources:
-    region_sets:
-      start_codon_500bp:
-        path: https://huggingface.co/datasets/BrentLab/yeast_genome_resources/blob/main/start_codon_500bp_upstream_promoters.bed
-        join_column: target_locus_tag
-  data_files:
-  - split: train
-    path: chec_mahendrawada_m2025_af_combined_start_codon_500bp.parquet
-  dataset_info:
-    features:
-    - name: sample_id
+      description: Peak start position (1-based)
+    - name: end
       dtype: int64
-      description: >-
-        Unique identifier for a sample. Each sample is the combination of replicates
-        for a given regulator and condition prior to having promoter enrichment
-        and significance calculated. 
-      role: sample_id
-
-- config_name: chec_mahendrawada_m2025_af_combined_intergenic
-  description: >-
-    Annotated feature dataset with binding score and statistics performed on combined
-    replicates for a single sample per regulator/condition, using intergenic regions
-    that are continuous with the 5' end of a target feature.
-    See scripts/mahendrawada_annoted_features.R.
-  dataset_type: annotated_features
-  genome_resources:
-    region_sets:
-      intergenic:
-        path: https://huggingface.co/datasets/BrentLab/yeast_genome_resources/blob/main/intergenic_regions_metadata_5_1.csv
-        join_column: ir_name
-  data_files:
-  - split: train
-    path: chec_mahendrawada_m2025_af_combined_intergenic.parquet
-  dataset_info:
-    features:
-    - name: sample_id
+      description: Peak end position (1-based, inclusive)
+    - name: width
       dtype: int64
-      description: >-
-        Unique identifier for a sample. Each sample is the combination of replicates
-        for a given regulator and condition prior to having promoter enrichment
-        and significance calculated. 
-      role: sample_id
+      description: Width of the peak in base pairs
+    - name: strand
+      dtype: string
+      description: Strand orientation (+ or -) 
+    - name: enrichment
+      dtype: float64
+      description: Enrichment of experiment vs background
+      role: quantitative_measure
+    - name: poisson_pval
+      dtype: float64
+      description: P-value from Poisson distribution test for peak significance
+      role: quantitative_measure
+    - name: log_poisson_pval
+      dtype: float64
+      description: Log-transformed Poisson p-value
+      role: quantitative_measure
+    - name: hypergeometric_pval
+      dtype: float64
+      description: P-value from hypergeometric distribution test for peak significance
+      role: quantitative_measure
+    - name: log_hypergeometric_pval
+      dtype: float64
+      description: Log-transformed hypergeometric p-value
+      role: quantitative_measure
+    - name: poisson_qval
+      dtype: float64
+      description: FDR-adjusted q-value from Poisson test (multiple testing correction)
+      role: quantitative_measure
+    - name: hypergeometric_qval
+      dtype: float64
+      description: FDR-adjusted q-value from hypergeometric test (multiple testing correction)
+      role: quantitative_measure
 
 - config_name: rna_seq
   description: Nascent RNA-seq differential expression data following transcription factor depletion using 4TU metabolic labeling
@@ -1235,15 +477,25 @@ configs:
       description: >-
         unique identifier for a specific sample, which uniquely identifies one of the 178 TFs.
         Across datasets in this repo, the a given sample_id identifies the same regulator.
-      role: sample_id
     - name: db_id
-      dtype: float64
+      dtype: integer
       description: >-
         an old unique identifer, for use internally only. Deprecated and will be removed eventually.
         Do not use in analysis.
+    - name: regulator_locus_tag
+      dtype: string
+      description: Systematic gene name (ORF identifier) of the depleted transcription factor
+    - name: regulator_symbol
+      dtype: string
+      description: Standard gene symbol of the depleted transcription factor
+    - name: target_locus_tag
+      dtype: string
+      description: Systematic gene name (ORF identifier) of the differentially expressed target gene
+    - name: target_symbol
+      dtype: string
+      description: Standard gene symbol of the differentially expressed target gene
     - name: log2fc
       dtype: float64
-      role: quantitative_measure
       description: Log2 fold change (IAA/DMSO) for significantly affected genes (DESeq2, padj <0.1, FC >= 1.3)
 
 - config_name: rnaseq_reprocessed
@@ -1264,77 +516,32 @@ configs:
       dtype: string
       description: Composite identifier combining regulator, condition, timepoint, and treatment information from the merged IAA and DMSO sample IDs
       role: sample_id
+    - name: regulator_locus_tag
+      dtype: string
+      description: Systematic gene identifier for the depleted transcription factor
+      role: regulator_identifier
+    - name: regulator_symbol
+      dtype: string
+      description: Standard gene symbol for the depleted transcription factor
+      role: regulator_identifier
     - name: env_condition
       dtype:
         class_label:
           names: ["standard_30C", "SM", "galactose", "raffinose", "heat_shock_37C"]
       description: Environmental growth condition for this experiment
       role: experimental_condition
-      definitions:
-        standard_30C:
-          description: Standard synthetic complete medium at 30°C; the baseline growth condition.
-          temperature_celsius: 30
-          media:
-            name: synthetic_complete
-        SM:
-          description: >-
-            Amino acid starvation induced by sulfometuron methyl (SM) in
-            synthetic complete medium lacking Ile/Val.
-          temperature_celsius: 30
-          media:
-            name: synthetic_complete_minus_ile_val
-          chemical_treatment:
-            compound: sulfometuron_methyl
-            concentration_ug_per_mL: 0.5
-            duration_minutes: 60
-        galactose:
-          description: >-
-            Galactose induction condition for Gal4 experiments; cells grown
-            in YEP-Raffinose then induced with 2% galactose for 2 hours.
-          temperature_celsius: 30
-          media:
-            # Methods: YEP-Raffinose (1% yeast extract, 2% peptone, 2% raffinose)
-            # induced with 2% galactose for 2h
-            name: yeast_extract_peptone_raffinose_plus_galactose
-            carbon_source:
-              - compound: D-raffinose
-                concentration_percent: 2
-              - compound: D-galactose
-                concentration_percent: 2
-            nitrogen_source:
-              - compound: yeast_extract
-                concentration_percent: 1
-              - compound: peptone
-                concentration_percent: 2
-          galactose_induction_duration_hours: 2
-        raffinose:
-          description: >-
-            Uninduced raffinose condition for Gal4 experiments; cells grown
-            in YEP-Raffinose without galactose addition.
-          temperature_celsius: 30
-          media:
-            # Methods: YEP-Raffinose (1% yeast extract, 2% peptone, 2% raffinose)
-            name: yeast_extract_peptone_raffinose
-            carbon_source:
-              - compound: D-raffinose
-                concentration_percent: 2
-            nitrogen_source:
-              - compound: yeast_extract
-                concentration_percent: 1
-              - compound: peptone
-                concentration_percent: 2
-        heat_shock_37C:
-          description: >-
-            Heat shock to 37°C for 10 minutes, used for Hsf1 and Msn2
-            experiments; equal volume of 44°C medium added to 30°C culture.
-          initial_temperature_celsius: 30
-          mixing_temperature_celsius: 44
-          final_temperature_celsius: 37
-          incubation_duration_minutes: 10
     - name: timepoint
-      dtype: int64
+      dtype: float64
       description: Time point in minutes (standard is 30 minutes post-treatment. very few other timepoints)
       role: experimental_condition
+    - name: target_locus_tag
+      dtype: string
+      description: Systematic gene identifier for the differentially expressed target gene
+      role: target_identifier
+    - name: target_symbol
+      dtype: string
+      description: Standard gene symbol for the differentially expressed target gene
+      role: target_identifier
     - name: baseMean
       dtype: float64
       description: Mean of normalized counts across all samples (DESeq2 output)
@@ -1369,33 +576,27 @@ configs:
     path: degron_counts_meta.parquet
   dataset_info:
     features:
-    - name: sample_id
-      dtype: float64
-      description: Unique sample identifier combining replicates by treatment
-      role: secondary_sample_id
     - name: sra_accession
       dtype: string
       description: SRA run accession identifier for this sample
-      role: sample_id
+      role: sample_identifier
     - name: gsm_accession
       dtype: string
       description: GEO sample accession identifier (GSM ID)
+    - name: regulator_locus_tag
+      dtype: string
+      description: Systematic gene identifier for the transcription factor
+      role: regulator_identifier
+    - name: regulator_symbol
+      dtype: string
+      description: Standard gene symbol for the transcription factor
+      role: regulator_identifier
     - name: degron_treatment
       dtype:
         class_label:
           names: ["DMSO", "IAA"]
       description: Degron treatment condition (DMSO control or IAA degradation)
       role: experimental_condition
-      definitions:
-        DMSO:
-          description: DMSO vehicle control; the auxin-inducible degron tag is inactive and the transcription factor is present.
-        IAA:
-          description: Indole-3-acetic acid (auxin) treatment to induce degradation of the IAA7-tagged transcription factor.
-          chemical_treatment:
-            compound: indole-3-acetic_acid
-            # Methods: 500 μM IAA for 30 min
-            concentration_uM: 500
-            duration_minutes: 30
     - name: degron_variant
       dtype:
         class_label:
@@ -1404,70 +605,30 @@ configs:
     - name: env_condition
       dtype:
         class_label:
-          names: ["standard_30C", "SM", "galactose", "raffinose", "no_galactose", "heat_shock_37C"]
+          names: ["standard_30C", "SM", "galactose", "raffinose", "heat_shock_37C"]
       description: Environmental growth condition
       role: experimental_condition
-      definitions:
-        standard_30C:
-          description: Standard synthetic complete medium at 30°C; the baseline growth condition.
-          temperature_celsius: 30
-          media:
-            name: synthetic_complete
-        SM:
-          description: >-
-            Amino acid starvation induced by sulfometuron methyl (SM) in
-            synthetic complete medium lacking Ile/Val.
-          temperature_celsius: 30
-          media:
-            name: synthetic_complete_minus_ile_val
-          chemical_treatment:
-            compound: sulfometuron_methyl
-            concentration_ug_per_mL: 0.5
-            duration_minutes: 60
-        galactose:
-          description: >-
-            Galactose induction condition for Gal4 experiments; cells grown in
-            YEP-Raffinose then induced with 2% galactose for 2 hours.
-          temperature_celsius: 30
-          media:
-            name: yeast_extract_peptone
-            carbon_source:
-              - compound: D-raffinose
-                concentration_percent: 2
-              - compound: D-galactose
-                concentration_percent: 2
-          galactose_induction_duration_hours: 2
-        raffinose:
-          description: >-
-            Uninduced raffinose condition for Gal4 experiments; cells grown in
-            YEP-Raffinose without galactose addition.
-          temperature_celsius: 30
-          media:
-            name: yeast_extract_peptone
-            carbon_source:
-              - compound: D-raffinose
-                concentration_percent: 2
-        no_galactose:
-          description: Same medium as the galactose samples, without the galactose.
-          temperature_celsius: 30
-          media:
-            name: yeast_extract_peptone
-            carbon_source:
-              - compound: D-raffinose
-                concentration_percent: 2
-        heat_shock_37C:
-          description: >-
-            Heat shock to 37°C for 10 minutes, used for Hsf1 and Msn2
-            experiments; equal volume of 44°C medium added to 30°C culture.
-          initial_temperature_celsius: 30
-          final_temperature_celsius: 37
-          incubation_duration_minutes: 10
     - name: timepoint
-      dtype: int32
+      dtype: float64
       description: Time point for time-series experiments (minutes)
     - name: replicate
       dtype: string
       description: Biological replicate identifier (A, B, or C)
+    - name: no_feature
+      dtype: int64
+      description: HTSeq count of reads not assigned to any feature
+    - name: ambiguous
+      dtype: int64
+      description: HTSeq count of reads mapping ambiguously to multiple features
+    - name: too_low_aQual
+      dtype: int64
+      description: HTSeq count of reads filtered due to low alignment quality
+    - name: alignment_not_unique
+      dtype: int64
+      description: HTSeq count of reads with non-unique alignments 
+    - name: sample_id
+      dtype: string
+      description: Unique sample identifier combining replicates by treatment
 
 - config_name: degron_counts
   description: HTSeq gene-level read counts for auxin-inducible degron perturbation experiments
@@ -1481,11 +642,19 @@ configs:
       dtype: string
       description: SRA run accession identifier linking to sample metadata
       role: sample_id
+    - name: target_locus_tag
+      dtype: string
+      description: Systematic gene identifier from BrentLab yeast genomic features (compatible with BrentLab yeast collection)
+      role: target_identifier
+    - name: target_symbol
+      dtype: string
+      description: Standard gene symbol from BrentLab yeast genomic features (compatible with BrentLab yeast collection)
+      role: target_identifier
     - name: orig_locus_tag
       dtype: string
       description: Original systematic gene identifier from R64-1-1 genome annotation as reported by Mahendrawada et al. 2025
     - name: count
-      dtype: float64
+      dtype: int64
       description: HTSeq gene-level read count from R64-1-1 genome annotation
       role: quantitative_measure
 
@@ -1501,70 +670,42 @@ configs:
     - name: sra_accession
       dtype: string
       description: SRA run accession identifier for this sample
-      role: sample_id
+      role: sample_identifier
     - name: gsm_accession
       dtype: string
       description: GEO sample accession identifier (GSM ID)
+    - name: regulator_locus_tag
+      dtype: string
+      description: Systematic gene identifier for the MNase-tagged transcription factor
+      role: regulator_identifier
+    - name: regulator_symbol
+      dtype: string
+      description: Standard gene symbol for the MNase-tagged transcription factor
+      role: regulator_identifier
     - name: env_condition
       dtype:
         class_label:
           names: ["standard_30C", "SM", "galactose", "raffinose", "heat_shock_37C"]
       description: Environmental growth condition
       role: experimental_condition
-      definitions:
-        standard_30C:
-          description: Standard synthetic complete medium at 30°C; the baseline growth condition.
-          temperature_celsius: 30
-          media:
-            name: synthetic_complete
-        SM:
-          description: >-
-            Amino acid starvation induced by sulfometuron methyl (SM) in
-            synthetic complete medium lacking Ile/Val.
-          temperature_celsius: 30
-          media:
-            name: synthetic_complete_minus_ile_val
-          chemical_treatment:
-            compound: sulfometuron_methyl
-            concentration_ug_per_mL: 0.5
-            duration_minutes: 60
-        galactose:
-          description: >-
-            Galactose induction condition for Gal4 experiments; cells grown in
-            YEP-Raffinose then induced with 2% galactose for 2 hours.
-          temperature_celsius: 30
-          media:
-            name: yeast_extract_peptone
-            carbon_source:
-              - compound: D-raffinose
-                concentration_percent: 2
-              - compound: D-galactose
-                concentration_percent: 2
-          galactose_induction_duration_hours: 2
-        raffinose:
-          description: >-
-            Uninduced raffinose condition for Gal4 experiments; cells grown in
-            YEP-Raffinose without galactose addition.
-          temperature_celsius: 30
-          media:
-            name: yeast_extract_peptone
-            carbon_source:
-              - compound: D-raffinose
-                concentration_percent: 2
-        heat_shock_37C:
-          description: >-
-            Heat shock to 37°C for 10 minutes, used for Hsf1 and Msn2
-            experiments; equal volume of 44°C medium added to 30°C culture.
-          initial_temperature_celsius: 30
-          final_temperature_celsius: 37
-          incubation_duration_minutes: 10
     - name: replicate
       dtype: string
       description: Biological replicate identifier (A, B, or C)
+    - name: no_feature
+      dtype: int64
+      description: HTSeq count of reads not assigned to any feature
+    - name: ambiguous
+      dtype: int64
+      description: HTSeq count of reads mapping ambiguously to multiple features
+    - name: too_low_aQual
+      dtype: int64
+      description: HTSeq count of reads filtered due to low alignment quality
+    - name: alignment_not_unique
+      dtype: int64
+      description: HTSeq count of reads with non-unique alignments
     - name: sample_id
-      dtype: float64
+      dtype: string
       description: Unique sample identifier combining replicates by treatment
-      role: secondary_sample_id
 
 - config_name: mnase_fusion_rnaseq_counts
   description: HTSeq gene-level read counts for MNase fusion strain RNA-seq experiments
@@ -1578,11 +719,19 @@ configs:
       dtype: string
       description: SRA run accession identifier linking to sample metadata
       role: sample_id
+    - name: target_locus_tag
+      dtype: string
+      description: Systematic gene identifier from BrentLab yeast genomic features (compatible with BrentLab yeast collection)
+      role: target_identifier
+    - name: target_symbol
+      dtype: string
+      description: Standard gene symbol from BrentLab yeast genomic features (compatible with BrentLab yeast collection)
+      role: target_identifier
     - name: orig_locus_tag
       dtype: string
       description: Original systematic gene identifier from R64-1-1 genome annotation as reported by Mahendrawada et al. 2025
     - name: count
-      dtype: float64
+      dtype: int64
       description: HTSeq gene-level read count from R64-1-1 genome annotation
       role: quantitative_measure
 
@@ -1595,14 +744,10 @@ configs:
     path: wt_baseline_counts_meta.parquet
   dataset_info:
     features:
-    - name: sample_id
-      dtype: float64
-      description: Unique sample identifier combining replicates by treatment
-      role: secondary_sample_id
     - name: sra_accession
       dtype: string
       description: SRA run accession identifier for this sample
-      role: sample_id
+      role: sample_identifier
     - name: gsm_accession
       dtype: string
       description: GEO sample accession identifier (GSM ID)
@@ -1612,56 +757,24 @@ configs:
           names: ["standard_30C", "SM", "galactose", "raffinose", "heat_shock_37C"]
       description: Environmental growth condition
       role: experimental_condition
-      definitions:
-        standard_30C:
-          description: Standard synthetic complete medium at 30°C; the baseline growth condition.
-          temperature_celsius: 30
-          media:
-            name: synthetic_complete
-        SM:
-          description: >-
-            Amino acid starvation induced by sulfometuron methyl (SM) in
-            synthetic complete medium lacking Ile/Val.
-          temperature_celsius: 30
-          media:
-            name: synthetic_complete_minus_ile_val
-          chemical_treatment:
-            compound: sulfometuron_methyl
-            concentration_ug_per_mL: 0.5
-            duration_minutes: 60
-        galactose:
-          description: >-
-            Galactose induction condition for Gal4 experiments; cells grown in
-            YEP-Raffinose then induced with 2% galactose for 2 hours.
-          temperature_celsius: 30
-          media:
-            name: yeast_extract_peptone
-            carbon_source:
-              - compound: D-raffinose
-                concentration_percent: 2
-              - compound: D-galactose
-                concentration_percent: 2
-          galactose_induction_duration_hours: 2
-        raffinose:
-          description: >-
-            Uninduced raffinose condition for Gal4 experiments; cells grown in
-            YEP-Raffinose without galactose addition.
-          temperature_celsius: 30
-          media:
-            name: yeast_extract_peptone
-            carbon_source:
-              - compound: D-raffinose
-                concentration_percent: 2
-        heat_shock_37C:
-          description: >-
-            Heat shock to 37°C for 10 minutes, used for Hsf1 and Msn2
-            experiments; equal volume of 44°C medium added to 30°C culture.
-          initial_temperature_celsius: 30
-          final_temperature_celsius: 37
-          incubation_duration_minutes: 10
     - name: replicate
       dtype: string
       description: Biological replicate identifier (A, B, or C)
+    - name: no_feature
+      dtype: int64
+      description: HTSeq count of reads not assigned to any feature
+    - name: ambiguous
+      dtype: int64
+      description: HTSeq count of reads mapping ambiguously to multiple features
+    - name: too_low_aQual
+      dtype: int64
+      description: HTSeq count of reads filtered due to low alignment quality
+    - name: alignment_not_unique
+      dtype: int64
+      description: HTSeq count of reads with non-unique alignments 
+    - name: sample_id
+      dtype: string
+      description: Unique sample identifier combining replicates by treatment
 
 - config_name: wt_baseline_counts
   description: HTSeq gene-level read counts for wild-type baseline RNA-seq experiments
@@ -1675,11 +788,19 @@ configs:
       dtype: string
       description: SRA run accession identifier linking to sample metadata
       role: sample_id
+    - name: target_locus_tag
+      dtype: string
+      description: Systematic gene identifier from BrentLab yeast genomic features (compatible with BrentLab yeast collection)
+      role: target_identifier
+    - name: target_symbol
+      dtype: string
+      description: Standard gene symbol from BrentLab yeast genomic features (compatible with BrentLab yeast collection)
+      role: target_identifier
     - name: orig_locus_tag
       dtype: string
       description: Original systematic gene identifier from R64-1-1 genome annotation as reported by Mahendrawada et al. 2025
     - name: count
-      dtype: float64
+      dtype: int64
       description: HTSeq gene-level read count from R64-1-1 genome annotation
       role: quantitative_measure
 
@@ -1692,14 +813,10 @@ configs:
     path: wt_degron_control_counts_meta.parquet
   dataset_info:
     features:
-    - name: sample_id
-      dtype: float64
-      description: Unique sample identifier combining replicates by treatment
-      role: secondary_sample_id
     - name: sra_accession
       dtype: string
       description: SRA run accession identifier for this sample
-      role: sample_id
+      role: sample_identifier
     - name: gsm_accession
       dtype: string
       description: GEO sample accession identifier (GSM ID)
@@ -1709,19 +826,24 @@ configs:
           names: ["DMSO", "IAA"]
       description: Degron treatment condition (DMSO control or IAA degradation)
       role: experimental_condition
-      definitions:
-        DMSO:
-          description: DMSO vehicle control; the auxin-inducible degron tag is inactive and the transcription factor is present.
-        IAA:
-          description: Indole-3-acetic acid (auxin) treatment to induce degradation of the IAA7-tagged transcription factor.
-          chemical_treatment:
-            compound: indole-3-acetic_acid
-            # Methods: 500 μM IAA for 30 min
-            concentration_uM: 500
-            duration_minutes: 30
     - name: replicate
       dtype: string
       description: Biological replicate identifier (A, B, or C)
+    - name: no_feature
+      dtype: int64
+      description: HTSeq count of reads not assigned to any feature
+    - name: ambiguous
+      dtype: int64
+      description: HTSeq count of reads mapping ambiguously to multiple features
+    - name: too_low_aQual
+      dtype: int64
+      description: HTSeq count of reads filtered due to low alignment quality
+    - name: alignment_not_unique
+      dtype: int64
+      description: HTSeq count of reads with non-unique alignments
+    - name: sample_id
+      dtype: string
+      description: Unique sample identifier combining replicates by treatment
 
 - config_name: wt_degron_control_counts
   description: HTSeq gene-level read counts for wild-type degron control RNA-seq experiments
@@ -1735,11 +857,19 @@ configs:
       dtype: string
       description: SRA run accession identifier linking to sample metadata
       role: sample_id
+    - name: target_locus_tag
+      dtype: string
+      description: Systematic gene identifier from BrentLab yeast genomic features (compatible with BrentLab yeast collection)
+      role: target_identifier
+    - name: target_symbol
+      dtype: string
+      description: Standard gene symbol from BrentLab yeast genomic features (compatible with BrentLab yeast collection)
+      role: target_identifier
     - name: orig_locus_tag
       dtype: string
       description: Original systematic gene identifier from R64-1-1 genome annotation as reported by Mahendrawada et al. 2025
     - name: count
-      dtype: float64
+      dtype: int64
       description: HTSeq gene-level read count from R64-1-1 genome annotation
       role: quantitative_measure
 ---
@@ -1750,75 +880,3 @@ This data is taken from the Supplement of
 [Mahendrawada, L., Warfield, L., Donczew, R. et al. Low overlap of transcription factor DNA binding and regulatory targets. Nature 642, 796–804 (2025). https://doi.org/10.1038/s41586-025-08916-0](https://doi.org/10.1038/s41586-025-08916-0)
 
 and [GSE236948](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE236948)
-
-## Accessing Data
-
-The examples below require
-[labretriever](https://github.com/cmatKhan/labretriever#installation)
-(`pip install labretriever`) and/or the
-[HuggingFace Hub client](https://huggingface.co/docs/huggingface_hub/installation)
-(`pip install huggingface_hub`).
-
-### Accessing Data with labretriever
-
-This repository is part of a collection configured as a unified database using
-[labretriever.VirtualDB](https://cmatkhan.github.io/labretriever/virtual_db_configuration/).
-Download the
-[collection config](https://github.com/BrentLab/tfbpshiny/blob/main/tfbpshiny/brentlab_yeast_collection.yaml)
-and use it to query the data directly in Python, or with an AI assistant using the
-[labretriever plugin](https://cmatkhan.github.io/labretriever/mcp_server/#quick-install-claude-code-plugin).
-
-```python
-from labretriever.virtual_db import VirtualDB
-from labretriever.datacard import DataCard
-
-# Citation and metadata
-card = DataCard("BrentLab/mahendrawada_2025")
-info = card.info()
-print(info["doi"])
-print(info["citation"])
-
-# path to the downloaded brentlab_yeast_collection.yaml
-vdb = VirtualDB("/path/to/brentlab_yeast_collection.yaml")
-
-print(vdb.get_dataset_description("chec_m2025_500bp"))
-print(vdb.get_dataset_description("degron"))
-vdb.query("SELECT * FROM chec_m2025_500bp LIMIT 5")
-```
-
-### Direct parquet access
-
-The repository contains more data than what is exposed through the collection
-configuration. Use `DataCard.info()` to inspect available files, then download
-and query with DuckDB.
-
-Most files in this repository are single parquet files and can be read directly.
-The example below downloads the ChEC-seq annotated features; the degron RNA-seq
-dataset is available as `rnaseq_reprocessed.parquet`.
-
-```python
-from huggingface_hub import snapshot_download
-import duckdb
-
-repo_path = snapshot_download(
-    repo_id="BrentLab/mahendrawada_2025",
-    repo_type="dataset",
-    allow_patterns="chec_mahendrawada_m2025_af_combined.parquet",
-)
-conn = duckdb.connect()
-# returns a pandas DataFrame with the first 5 rows
-conn.execute(
-    "SELECT * FROM read_parquet(?) LIMIT 5",
-    [f"{repo_path}/chec_mahendrawada_m2025_af_combined.parquet"],
-).df()
-```
-
-### Accessing using R
-
-Clone the repository and read parquet files directly with
-[arrow](https://arrow.apache.org/docs/r/):
-
-```r
-# install.packages("arrow")
-arrow::read_parquet("chec_mahendrawada_m2025_af_combined.parquet")
-```

bp500_peaks.parquet

@@ -1,3 +0,0 @@
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-size 5145245

chec_mahendrawada_m2025_af_combined.parquet

@@ -1,3 +1,3 @@
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-oid sha256:db305f6af390c7434c10e226625ff9111f1664c3182a22aebb54c5cf1026d18b
-size 65646671
+oid sha256:2593b0cd31b7c822b281ca76e469ef269574fd6369ad4aa025c767d7cdeb5327
+size 74047926

chec_mahendrawada_m2025_af_combined_intergenic.parquet

@@ -1,3 +0,0 @@
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-oid sha256:1b8ef203f73dd77e208a815cbcaf463e4ad650bd2db475d2eecc3ca953b7b329
-size 59936002

chec_mahendrawada_m2025_af_combined_mindel.parquet

@@ -1,3 +0,0 @@
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-oid sha256:c474e3ab522310539d2b62c08d08495c895722f31eed8de6db9df88609be51dd
-size 330421828

chec_mahendrawada_m2025_af_combined_start_codon_500bp.parquet

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-oid sha256:784a976a3fa226a5f636681f60110ffaab07e0bf7d3dbc45b55393ccc85e20a8
-size 65744248

chec_mahendrawada_m2025_af_replicates.parquet

@@ -1,3 +1,3 @@
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-oid sha256:3b8426f1c4655734fd92a3fa1a975a5b38b0c81008b257f756f23c155bc619fe
-size 196807870
+oid sha256:fe42de1478934bc52f8ca027c088301b4dc7965043e94b769008e94eb27603c6
+size 220350616

chec_mahendrawada_m2025_af_replicates_intergenic.parquet

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:8bb1b590bd65bbb49d306027a7ca42bb44d6d8c89d68f1f2330f270924b381d4
-size 179917201

chec_mahendrawada_m2025_af_replicates_mindel.parquet

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:7b53571237fd363d2a98911d2d5f9cf0e29ced834038b003d6a971c1cdbde6a9
-size 993537212

chec_mahendrawada_m2025_af_replicates_start_codon_500bp.parquet

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:1ea9d6831517002c6720186efdb1d33ab05d79189e3b0527057833561d97b0c6
-size 196609887

intergenic_peaks.parquet

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:e59d194a482a91361e9c6ddf709d6985bdcbe97e37ab4453d7774bc8dc4877da
-size 5233403

kang_peaks.parquet

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:341eef9fece5b79198b32c8e22bf3dfa0008b55deb8a4ca9bcdbf9ee096dfa56
-size 5754120

mindel_peaks.parquet

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:be550377965567c72b0d149c51e75ee939604d8df7851ac2514b8e25c4785fcc
-size 4816242

rnaseq_reprocessed.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:dcedb4a208453a78d09315f06feb7417595b0df719dc842a44db7ae5a0b83032
-size 41575001
+oid sha256:66a53db51bfadb326f663f90a9da4a64d8e4724da679ad17851a530541ea3fb4
+size 43776387

scripts/compare_peak_vs_enrich_vs_orig_method.R

@@ -1,225 +0,0 @@
-library(tidyverse)
-library(here)
-library(arrow)
-library(readxl)
-
-files <- list()
-
-files$hahn <- list.files("~/Downloads/authors_repro/hahn_region_scoring",
-    "_summary.tsv",
-    recursive = TRUE, full.names = TRUE
-)
-names(files$hahn) <- str_remove(basename(dirname(files$hahn)), "_summary.tsv")
-
-files$enrich <- list.files("~/Downloads/authors_repro/promoter_scoring",
-    "_combined.tsv",
-    recursive = TRUE, full.names = TRUE
-)
-names(files$enrich) <- str_remove(basename(dirname(files$enrich)), "_combined.tsv")
-
-files$peaks <- list.files("~/Downloads/authors_repro/peaks",
-    "_annotated_peaks.txt",
-    recursive = TRUE,
-    full.names = TRUE
-)
-names(files$peaks) <- str_remove(basename(files$peaks), "_annotated_peaks.txt")
-
-read_in_annotated_peaks <- function(peak_path) {
-    df <- readr::read_tsv(peak_path, show_col_types = FALSE) |>
-        dplyr::rename(peakid = 1) |>
-        janitor::clean_names() |>
-        dplyr::select(
-            peakid, chr, start, end, strand, peak_score,
-            distance_to_tss, gene_name
-        )
-
-    if (nrow(df) == 0) {
-        warning(sprintf("Skipping empty annotation file: %s", basename(peak_path)))
-        return(NULL)
-    }
-    df
-}
-
-# Extract regulator + replicate from names like "ABF1_A" -> regulator "ABF1", replicate "A"
-parse_regulator_replicate <- function(names_vec) {
-    tibble::tibble(
-        id = names_vec,
-        regulator = sub("_[^_]+$", "", names_vec),
-        replicate = sub("^.*_", "", names_vec)
-    )
-}
-
-tmp_peaks <- purrr::map(files$peaks, read_in_annotated_peaks)
-
-meta <- parse_regulator_replicate(names(tmp_peaks))
-
-# attach regulator/replicate to each replicate's df, then bind all into one long table
-tmp_peaks_df <- purrr::imap(tmp_peaks, function(df, nm) {
-    if (is.null(df)) {
-        return(NULL)
-    }
-    df |>
-        dplyr::mutate(
-            regulator = meta$regulator[meta$id == nm],
-            replicate = meta$replicate[meta$id == nm]
-        )
-}) |>
-    dplyr::bind_rows()
-
-score_targets <- function(df, min_dist = 0, max_dist = 500) {
-    df |>
-        dplyr::filter(
-            peak_score > -log10(0.1),
-            dplyr::between(distance_to_tss, min_dist, max_dist)
-        ) |>
-        dplyr::group_by(regulator, gene_name) |>
-        dplyr::reframe(
-            n_peaks       = dplyr::n(),
-            n_replicates  = dplyr::n_distinct(replicate),
-            nearest_score = peak_score[which.min(abs(distance_to_tss))],
-            median_score  = median(peak_score),
-            max_score     = max(peak_score)
-        )
-}
-
-
-tmp_peaks_scored <- score_targets(tmp_peaks_df)
-
-
-hackett_30 <- arrow::read_parquet("~/projects/huggingface/hackett_2020/hackett_2020_analysis_set.parquet") |>
-    dplyr::filter(time == 30) |>
-    dplyr::group_by(regulator_symbol, target_locus_tag) |>
-    dplyr::arrange(dplyr::desc(responsive), .by_group = TRUE) |>
-    dplyr::slice(1) |>
-    dplyr::ungroup()
-
-
-hackett_targets <- unique(hackett_30$target_locus_tag)
-
-read_in_hahn_repro <- function(path) {
-    read_tsv(path) |>
-        filter(bound) |>
-        mutate(score = log2(tagged_tag_count)) |>
-        dplyr::select(
-            regulator_symbol = regulator,
-            target_locus_tag = locus_tag,
-            score
-        ) |>
-        filter(target_locus_tag %in% hackett_targets)
-}
-
-read_in_prom_enrich <- function(path) {
-    read_tsv(path) |>
-        dplyr::select(
-            regulator_symbol = regulator,
-            target_locus_tag = locus_tag,
-            score = log_poisson_pval
-        ) |>
-        filter(target_locus_tag %in% hackett_targets) |>
-        filter(!target_locus_tag %in% c(
-            "YOR201C", "YOR202W", "YOR203W",
-            "YCL018W", "YEL021W"
-        ))
-}
-
-dfs <- list()
-dfs$peaks <- tmp_peaks_scored |>
-    filter(n_replicates > 1) |>
-    dplyr::select(
-        regulator_symbol = regulator,
-        target_locus_tag = gene_name,
-        score = max_score
-    ) |>
-    filter(target_locus_tag %in% hackett_targets) |>
-    group_by(regulator_symbol) |>
-    filter(n() >= 25) |>
-    arrange(desc(score), .by_group = TRUE) |>
-    slice_head(n = 25) |>
-    ungroup() |>
-    left_join(dplyr::select(
-        hackett_30, regulator_symbol,
-        target_locus_tag, responsive
-    ))
-
-dfs$hahn <- map(files$hahn, read_in_hahn_repro) |>
-    bind_rows() |>
-    group_by(regulator_symbol) |>
-    filter(n() >= 25) |>
-    arrange(desc(score), .by_group = TRUE) |>
-    slice_head(n = 25) |>
-    ungroup() |>
-    left_join(dplyr::select(hackett_30, regulator_symbol, target_locus_tag, responsive))
-
-dfs$enrich <- map(files$enrich, read_in_prom_enrich) |>
-    bind_rows() |>
-    group_by(regulator_symbol) |>
-    arrange(score, .by_group = TRUE) |>
-    slice_head(n = 25) |>
-    ungroup() |>
-    left_join(dplyr::select(hackett_30, regulator_symbol, target_locus_tag, responsive))
-
-topn_df <- bind_rows(dfs, .id = "method") |>
-    mutate(method = factor(method,
-        levels = c("enrich", "hahn", "peaks"),
-        labels = c("Promoter Enrichment", "Hahn Method", "Max Peak Score")
-    )) |>
-    filter(!is.na(responsive)) |>
-    group_by(regulator_symbol, method) |>
-    reframe(
-        responsive = sum(responsive),
-        total = n(),
-        responsive_rate = (responsive / total) * 100
-    )
-
-text_size <- 15
-method_comp_plot <- ggplot(topn_df, aes(method, responsive_rate, fill = method)) +
-    geom_boxplot() +
-    theme_bw(base_size = text_size) +
-    ggtitle("Responsive Rate in Top 25 by Binding",
-        subtitle = "Perturbation Source: Hackett 2020"
-    ) +
-    theme(
-        axis.title.y = element_blank(),
-        axis.text.x = element_blank(),
-        axis.title.x = element_blank(),
-        plot.title = element_text(size = text_size),
-        axis.text.y = element_text(size = text_size),
-        legend.text = element_text(size = text_size),
-        legend.title = element_text(size = text_size),
-        legend.position = c(0.75, 0.85),
-        legend.background = element_rect(fill = "white", color = "grey80")
-    )
-
-ggsave(
-    filename = "method_comparison.svg",
-    plot = method_comp_plot,
-    width = 6, height = 7, units = "in"
-)
-
-
-method_comp_plot_reduced <- topn_df |>
-    filter(method %in% c("Promoter Enrichment", "Max Peak Score")) |>
-    droplevels() |>
-    ggplot(aes(method, responsive_rate, fill = method)) +
-    geom_boxplot() +
-    theme_bw(base_size = text_size) +
-    ggtitle("Responsive Rate in Top 25 by Binding",
-        subtitle = "Perturbation Source: Hackett 2020"
-    ) +
-    theme(
-        axis.title.y = element_blank(),
-        axis.text.x = element_blank(),
-        axis.title.x = element_blank(),
-        plot.title = element_text(size = text_size),
-        axis.text.y = element_text(size = text_size),
-        legend.text = element_text(size = text_size),
-        legend.title = element_text(size = text_size),
-        legend.position = c(0.75, 0.85),
-        legend.background = element_rect(fill = "white", color = "grey80")
-    )
-
-ggsave(
-    filename = "method_comparison_reduced.svg",
-    plot = method_comp_plot_reduced,
-    width = 6, height = 7, units = "in"
-)

scripts/data/FMNASEBDF2_A_R1.fastq.gz

@@ -1,3 +0,0 @@
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-oid sha256:5571918a5dc3aeb87b11e8c39bb15bbce07bca3a7ba520702f8ee8e74364bd8b
-size 240067188

scripts/data/FMNASEBDF2_A_R2.fastq.gz

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:52b9b5014ca3972f820b4b262d774bf1ea6c022ffe2b806d7b04c84a8187797a
-size 247313040

scripts/data/README

@@ -1,14 +0,0 @@
-## FMNASE*.fastq.gz
-
-These are the controls that are used by the authors for Mahendrawada 2025.
-These were shared via correspondance. The controls in the GEO accession
-did not reproduce the published results. These do.
-
-## reprocessed_mahendrawada_results
-
-this is the output of the scripts in this repo:
-
-https://github.com/BrentLab/checseq_promoter_enrichment_slurm_pipeline
-
-I confirmed that these peaks do reproduce the authors original 
-results when used in their protocol (also included in that repo)

scripts/data/reprocessed_mahendrawada_results/peaks/ABF1xstandard/A/ABF1xstandard_A_annotatePeaks.err

@@ -1,46 +0,0 @@
-
-	Using Custom Genome
-	Peak file = results/peaks/ABF1xstandard/A/ABF1xstandard_A_peaks.txt
-	Genome = S288C_reference_sequence_R64-5-1_20240529_chr_normalized.fa
-	Organism = unknown
-	Custom annotation GTF file: /ref/mblab/data/yeast_data/reprocess_mahendrawada/mahendrawada_slurm_pipeline/sacCer3.ensGene.gtf (using transcript_id)
-	Peak/BED file conversion summary:
-		BED/Header formatted lines: 0
-		peakfile formatted lines: 1380
-		Duplicated Peak IDs: 0
-
-	Peak File Statistics:
-		Total Peaks: 1380
-		Redundant Peak IDs: 0
-		Peaks lacking information: 0 (need at least 5 columns per peak)
-		Peaks with misformatted coordinates: 0 (should be integer)
-		Peaks with misformatted strand: 0 (should be either +/- or 0/1)
-
-	Peak file looks good!
-
-	Reading Positions...
-	-----------------------
-	offset=0
-	Finding Closest TSS...
-	Processing custom annotation file...
-	Features that will be considered:
-		exon
-
-	7507 lines contained useful feature information
-	Parsing GTF to make an annotation table from attributes...
-	Features that will be considered:
-		exon
-
-	7507 lines contained useful feature information
-assignGenomeAnnotation: error while loading shared libraries: libstdc++.so.6: cannot open shared object file: No such file or directory
-	Could not find basic annotation file (0.64947198222308.2.tmp)
-	Features that will be considered:
-		exon
-
-	7507 lines contained useful feature information
-assignGenomeAnnotation: error while loading shared libraries: libstdc++.so.6: cannot open shared object file: No such file or directory
-	Counting Tags in Peaks from each directory...
-	Organism: unknown
-	Outputing Annotation File...
-	Done annotating peaks file
-

scripts/data/reprocessed_mahendrawada_results/peaks/ABF1xstandard/A/ABF1xstandard_A_peaks.bed

@@ -1,1417 +0,0 @@
-# HOMER Peaks
-# Peak finding parameters:
-# tag directory = results/tag_dirs/ABF1xstandard/A
-#
-# total peaks = 1380
-# peak size = 162
-# peaks found using tags on both strands
-# minimum distance between peaks = 324
-# fragment length = 162
-# genome size = 12157100
-# Total tags = 21053664.0
-# Total tags in peaks = 5619996.0
-# Approximate IP efficiency = 26.69%
-# tags per bp = 1.511419
-# expected tags per peak = 244.850
-# maximum tags considered per bp = 173.0
-# effective number of tags used for normalization = 10000000.0
-# Peaks have been centered at maximum tag pile-up
-# FDR rate threshold = 0.001000000
-# FDR effective poisson threshold = 2.712212e-05
-# FDR tag threshold = 311.0
-# number of putative peaks = 4311
-#
-# input tag directory = checseq_promoter_enrichment_slurm_pipeline/control_data/from_correspondance/tag_dir
-# Fold over input required = 10.00
-# Poisson p-value over input required = 1.00e-04
-# Putative peaks filtered by input = 2722
-#
-# size of region used for local filtering = 10000
-# Fold over local region required = 6.00
-# Poisson p-value over local region required = 1.00e-04
-# Putative peaks filtered by local signal = 209
-#
-# cmd = findPeaks results/tag_dirs/ABF1xstandard/A -style factor -i checseq_promoter_enrichment_slurm_pipeline/control_data/from_correspondance/tag_dir -o auto -C 0 -L 6 -F 10
-#
-# Column Headers:
-#PeakID	chr	start	end	strand	Normalized Tag Count	focus ratio	findPeaks Score	Total Tags (normalized to Control Experiment)	Control Tags	Fold Change vs Control	p-value vs Control	Fold Change vs Local	p-value vs Local
-chrXV	1084677	1084840	chrXV-5	17911	+
-chrVIII	557048	557211	chrVIII-5	8791	+
-chrXII	5489	5652	chrXII-22	8597	+
-chrVI	4480	4643	chrVI-3	7535	+
-chrIV	1525534	1525697	chrIV-9	7345	+
-chrI	70976	71139	chrI-1	7322	+
-chrII	5646	5809	chrII-2	7289	+
-chrV	6238	6401	chrV-13	6997	+
-chrVII	905583	905746	chrVII-2	6901	+
-chrVIII	122316	122479	chrVIII-1	6665	+
-chrIV	1429185	1429348	chrIV-1	6664	+
-chrXV	511376	511539	chrXV-2	6656	+
-chrVII	428156	428319	chrVII-4	6621	+
-chrXII	10995	11158	chrXII-27	6620	+
-chrXII	1071714	1071877	chrXII-19	6408	+
-chrIV	1011547	1011710	chrIV-2	6305	+
-chrVII	1084385	1084548	chrVII-3	6136	+
-chrXI	99753	99916	chrXI-1	5924	+
-chrXIV	6417	6580	chrXIV-7	5902	+
-chrII	452223	452386	chrII-13	5876	+
-chrXII	704425	704588	chrXII-20	5844	+
-chrXV	988334	988497	chrXV-1	5547	+
-chrIV	867701	867864	chrIV-6	5485	+
-chrV	192029	192192	chrV-9	5366	+
-chrXVI	339488	339651	chrXVI-2	5339	+
-chrXIII	408292	408455	chrXIII-1	5315	+
-chrXIV	349972	350135	chrXIV-1	5285	+
-chrIV	1267036	1267199	chrIV-4	5267	+
-chrXII	253264	253427	chrXII-25	5198	+
-chrIX	254331	254494	chrIX-1	5161	+
-chrXI	80741	80904	chrXI-13	5091	+
-chrVI	225120	225283	chrVI-2	5086	+
-chrXII	1065266	1065429	chrXII-21	5034	+
-chrII	136045	136208	chrII-1	5029	+
-chrXVI	6321	6484	chrXVI-11	5017	+
-chrXIV	57827	57990	chrXIV-4	4990	+
-chrXVI	257076	257239	chrXVI-5	4971	+
-chrXIV	355497	355660	chrXIV-8	4966	+
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-chrXV	606261	606424	chrXV-17	3626	+
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-chrI	68397	68560	chrI-4	3329	+
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-chrXV	1083996	1084159	chrXV-19	3289	+
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-chrXII	605368	605531	chrXII-30	3229	+
-chrXIII	701340	701503	chrXIII-7	3223	+
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-chrII	140880	141043	chrII-9	3212	+
-chrIV	1524694	1524857	chrIV-14	3205	+
-chrXV	168018	168181	chrXV-10	3190	+
-chrXVI	207742	207905	chrXVI-18	3187	+
-chrVII	397955	398118	chrVII-8	3166	+
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-chrXV	825697	825860	chrXV-13	3154	+
-chrIV	848091	848254	chrIV-8	3152	+
-chrIV	836098	836261	chrIV-45	3149	+
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-chrIV	1195105	1195268	chrIV-12	3135	+
-chrVII	547399	547562	chrVII-12	3128	+
-chrXV	494321	494484	chrXV-14	3126	+
-chrIV	1084747	1084910	chrIV-26	3115	+
-chrIV	1362445	1362608	chrIV-25	3113	+
-chrX	6679	6842	chrX-15	3108	+
-chrIV	215841	216004	chrIV-13	3106	+
-chrIX	321143	321306	chrIX-13	3102	+
-chrXV	443841	444004	chrXV-15	3091	+
-chrIV	807995	808158	chrIV-16	3086	+
-chrXV	377886	378049	chrXV-21	3079	+
-chrXIII	453657	453820	chrXIII-9	3076	+
-chrXIII	209151	209314	chrXIII-13	3075	+
-chrXI	317291	317454	chrXI-15	3071	+
-chrIV	501480	501643	chrIV-17	3069	+
-chrXIII	923645	923808	chrXIII-21	3064	+
-chrV	569671	569834	chrV-14	3052	+
-chrXII	924602	924765	chrXII-37	3042	+
-chrI	190197	190360	chrI-5	3038	+
-chrX	256936	257099	chrX-8	3028	+
-chrXV	128253	128416	chrXV-25	3016	+
-chrX	744979	745142	chrX-7	3012	+
-chrIV	1201840	1202003	chrIV-10	2994	+
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-chrIV	1242581	1242744	chrIV-19	2987	+
-chrXV	186818	186981	chrXV-72	2983	+
-chrXV	109745	109908	chrXV-24	2980	+
-chrX	7548	7711	chrX-11	2969	+
-chrVII	547	710	chrVII-10	2966	+
-chrVII	677683	677846	chrVII-7	2965	+
-chrXV	836727	836890	chrXV-20	2964	+
-chrIV	341336	341499	chrIV-51	2957	+
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-chrX	116411	116574	chrX-22	2953	+
-chrXII	108299	108462	chrXII-40	2950	+
-chrXI	402242	402405	chrXI-12	2925	+
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-chrXI	338941	339104	chrXI-18	2913	+
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-chrIV	369260	369423	chrIV-23	2900	+
-chrI	569	732	chrI-6	2893	+
-chrIV	1080716	1080879	chrIV-40	2891	+
-chrIV	1229764	1229927	chrIV-30	2890	+
-chrIV	156030	156193	chrIV-20	2869	+
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-chrIII	315859	316022	chrIII-3	2861	+
-chrIV	1013902	1014065	chrIV-22	2859	+
-chrIII	862	1025	chrIII-4	2853	+
-chrIV	132948	133111	chrIV-29	2842	+
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-chrX	545376	545539	chrX-9	2824	+
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-chrX	623290	623453	chrX-13	2823	+
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-chrII	555875	556038	chrII-14	2810	+
-chrXVI	610026	610189	chrXVI-28	2810	+
-chrVIII	375231	375394	chrVIII-13	2808	+
-chrVII	560246	560409	chrVII-15	2806	+
-chrVII	974565	974728	chrVII-13	2805	+
-chrIV	673	836	chrIV-21	2800	+
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-chrXI	408173	408336	chrXI-21	2788	+
-chrIV	392438	392601	chrIV-37	2782	+
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-chrIV	1062958	1063121	chrIV-59	2764	+
-chrXV	493063	493226	chrXV-29	2764	+
-chrXIII	379252	379415	chrXIII-18	2760	+
-chrXIII	517398	517561	chrXIII-15	2758	+
-chrIV	62169	62332	chrIV-53	2758	+
-chrVI	176724	176887	chrVI-8	2757	+
-chrVII	384628	384791	chrVII-23	2757	+
-chrXV	882133	882296	chrXV-33	2749	+
-chrXVI	411622	411785	chrXVI-16	2744	+
-chrV	492124	492287	chrV-20	2740	+
-chrV	284574	284737	chrV-18	2739	+
-chrIX	439137	439300	chrIX-8	2732	+
-chrIV	56746	56909	chrIV-33	2731	+
-chrIV	286815	286978	chrIV-36	2725	+
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-chrXI	321769	321932	chrXI-17	2711	+
-chrXVI	75317	75480	chrXVI-15	2708	+
-chrII	6378	6541	chrII-18	2707	+
-chrX	83136	83299	chrX-21	2706	+
-chrXIV	7198	7361	chrXIV-11	2706	+
-chrIV	909548	909711	chrIV-18	2698	+
-chrXV	505393	505556	chrXV-18	2694	+
-chrVII	1083737	1083900	chrVII-17	2692	+
-chrIV	1277380	1277543	chrIV-44	2687	+
-chrXV	1009838	1010001	chrXV-53	2682	+
-chrXV	216376	216539	chrXV-28	2674	+
-chrXII	658321	658484	chrXII-34	2659	+
-chrXIII	557147	557310	chrXIII-16	2654	+
-chrXIII	433767	433930	chrXIII-14	2649	+
-chrIV	1289063	1289226	chrIV-24	2644	+
-chrX	521786	521949	chrX-52	2634	+
-chrXII	504162	504325	chrXII-84	2631	+
-chrXII	903447	903610	chrXII-39	2613	+
-chrXIII	540140	540303	chrXIII-19	2607	+
-chrX	173274	173437	chrX-10	2606	+
-chrVII	190886	191049	chrVII-26	2606	+
-chrVII	859570	859733	chrVII-43	2605	+
-chrXV	472418	472581	chrXV-27	2603	+
-chrXII	260679	260842	chrXII-51	2599	+
-chrXV	1091040	1091203	chrXV-26	2597	+
-chrXI	577	740	chrXI-10	2592	+
-chrII	595748	595911	chrII-21	2591	+
-chrVII	1026869	1027032	chrVII-32	2589	+
-chrXVI	942476	942639	chrXVI-32	2583	+
-chrXVI	639178	639341	chrXVI-22	2581	+
-chrX	524589	524752	chrX-19	2576	+
-chrIX	177688	177851	chrIX-10	2570	+
-chrXVI	822142	822305	chrXVI-23	2558	+
-chrXI	571096	571259	chrXI-16	2557	+
-chrXV	27532	27695	chrXV-23	2555	+
-chrIV	546119	546282	chrIV-28	2554	+
-chrXVI	586206	586369	chrXVI-20	2552	+
-chrIX	21776	21939	chrIX-6	2551	+
-chrV	435678	435841	chrV-23	2547	+
-chrVIII	54494	54657	chrVIII-15	2540	+
-chrXVI	163830	163993	chrXVI-34	2525	+
-chrIV	636231	636394	chrIV-48	2524	+
-chrXI	665980	666143	chrXI-9	2519	+
-chrXII	514905	515068	chrXII-32	2519	+
-chrX	432318	432481	chrX-23	2511	+
-chrVII	809962	810125	chrVII-30	2504	+
-chrXIV	507370	507533	chrXIV-22	2499	+
-chrI	29812	29975	chrI-7	2498	+
-chrIX	166088	166251	chrIX-11	2496	+
-chrII	697532	697695	chrII-23	2494	+
-chrXVI	666059	666222	chrXVI-43	2493	+
-chrV	303534	303697	chrV-15	2492	+
-chrVI	184180	184343	chrVI-9	2492	+
-chrXII	809061	809224	chrXII-35	2484	+
-chrIV	217310	217473	chrIV-32	2482	+
-chrXII	839491	839654	chrXII-45	2482	+
-chrVIII	521922	522085	chrVIII-25	2479	+
-chrXV	232169	232332	chrXV-37	2479	+
-chrIV	1087172	1087335	chrIV-43	2477	+
-chrIX	292187	292350	chrIX-12	2469	+
-chrVI	5299	5462	chrVI-7	2464	+
-chrII	74857	75020	chrII-25	2463	+
-chrIX	113449	113612	chrIX-15	2460	+
-chrIII	24478	24641	chrIII-7	2452	+
-chrXII	566446	566609	chrXII-36	2443	+
-chrX	525698	525861	chrX-18	2439	+
-chrII	770590	770753	chrII-24	2434	+
-chrXV	218692	218855	chrXV-38	2428	+
-chrXII	76	239	chrXII-46	2428	+
-chrXII	796598	796761	chrXII-43	2421	+
-chrIV	746398	746561	chrIV-42	2421	+
-chrXII	241873	242036	chrXII-44	2418	+
-chrXV	611	774	chrXV-30	2410	+
-chrX	160240	160403	chrX-16	2409	+
-chrXIII	302843	303006	chrXIII-22	2406	+
-chrIV	599963	600126	chrIV-34	2387	+
-chrII	371011	371174	chrII-22	2386	+
-chrXII	84327	84490	chrXII-49	2382	+
-chrV	265983	266146	chrV-21	2378	+
-chrXIII	26129	26292	chrXIII-20	2374	+
-chrXIV	427325	427488	chrXIV-16	2370	+
-chrIV	1222478	1222641	chrIV-78	2369	+
-chrXI	514535	514698	chrXI-19	2366	+
-chrIV	755288	755451	chrIV-35	2358	+
-chrXV	479893	480056	chrXV-39	2355	+
-chrXV	444420	444583	chrXV-32	2354	+
-chrVIII	126020	126183	chrVIII-19	2346	+
-chrI	124521	124684	chrI-9	2342	+
-chrVIII	461398	461561	chrVIII-18	2334	+
-chrVII	823581	823744	chrVII-16	2332	+
-chrXII	198155	198318	chrXII-73	2324	+
-chrXII	932461	932624	chrXII-41	2324	+
-chrXII	11849	12012	chrXII-42	2311	+
-chrII	561101	561264	chrII-40	2310	+
-chrX	207613	207776	chrX-24	2306	+
-chrVII	609747	609910	chrVII-22	2298	+
-chrII	668533	668696	chrII-28	2295	+
-chrIV	628711	628874	chrIV-56	2293	+
-chrVII	785746	785909	chrVII-18	2292	+
-chrVI	74758	74921	chrVI-10	2290	+
-chrXV	304858	305021	chrXV-40	2289	+
-chrXIV	783360	783523	chrXIV-17	2278	+
-chrVII	423100	423263	chrVII-25	2274	+
-chrXIV	138090	138253	chrXIV-21	2269	+
-chrXVI	752027	752190	chrXVI-63	2268	+
-chrV	302464	302627	chrV-24	2258	+
-chrX	154780	154943	chrX-37	2250	+
-chrXVI	857066	857229	chrXVI-30	2247	+
-chrXII	585966	586129	chrXII-58	2246	+
-chrXV	370938	371101	chrXV-49	2245	+
-chrVIII	209345	209508	chrVIII-39	2245	+
-chrX	573027	573190	chrX-17	2244	+
-chrVII	56185	56348	chrVII-39	2236	+
-chrXV	487118	487281	chrXV-31	2235	+
-chrXI	93513	93676	chrXI-24	2231	+
-chrXII	1064390	1064553	chrXII-38	2231	+
-chrVII	167536	167699	chrVII-29	2227	+
-chrIII	50478	50641	chrIII-6	2224	+
-chrXI	519034	519197	chrXI-20	2224	+
-chrII	618640	618803	chrII-52	2217	+
-chrXIII	91901	92064	chrXIII-27	2199	+
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-chrXV	117552	117715	chrXV-61	1725	+
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-chrXV	1061257	1061420	chrXV-54	1705	+
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-chrXV	384923	385086	chrXV-57	1679	+
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-chrXV	619364	619527	chrXV-69	1649	+
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-chrVIII	115198	115361	chrVIII-32	1629	+
-chrXIII	831448	831611	chrXIII-48	1628	+
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-chrXIII	26567	26730	chrXIII-41	1614	+
-chrXV	733641	733804	chrXV-59	1612	+
-chrVIII	81788	81951	chrVIII-34	1609	+
-chrXV	1059013	1059176	chrXV-56	1609	+
-chrXII	212400	212563	chrXII-66	1607	+
-chrVII	433206	433369	chrVII-41	1605	+
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-chrIII	279892	280055	chrIII-22	1602	+
-chrIV	489270	489433	chrIV-81	1601	+
-chrV	208562	208725	chrV-40	1599	+
-chrXII	539694	539857	chrXII-115	1597	+
-chrII	504533	504696	chrII-51	1595	+
-chrII	378812	378975	chrII-48	1595	+
-chrIV	589539	589702	chrIV-83	1594	+
-chrXI	263111	263274	chrXI-38	1592	+
-chrXIV	380898	381061	chrXIV-33	1590	+
-chrVII	848341	848504	chrVII-54	1589	+
-chrXV	160783	160946	chrXV-66	1586	+
-chrXII	855633	855796	chrXII-74	1586	+
-chrXV	371395	371558	chrXV-65	1585	+
-chrX	90279	90442	chrX-38	1578	+
-chrXII	416902	417065	chrXII-77	1578	+
-chrII	718282	718445	chrII-50	1578	+
-chrXII	795325	795488	chrXII-70	1577	+
-chrXV	638862	639025	chrXV-62	1576	+
-chrXV	304328	304491	chrXV-74	1576	+
-chrXV	1043302	1043465	chrXV-64	1576	+
-chrXII	289718	289881	chrXII-75	1572	+
-chrXIV	466710	466873	chrXIV-40	1571	+
-chrVII	601349	601512	chrVII-45	1570	+
-chrXVI	919114	919277	chrXVI-77	1569	+
-chrXI	554640	554803	chrXI-41	1566	+
-chrIV	130605	130768	chrIV-90	1565	+
-chrXIII	777361	777524	chrXIII-45	1562	+
-chrV	522826	522989	chrV-38	1559	+
-chrXV	69113	69276	chrXV-60	1556	+
-chrXVI	463999	464162	chrXVI-44	1556	+
-chrXIII	472858	473021	chrXIII-42	1555	+
-chrXVI	828271	828434	chrXVI-55	1553	+
-chrX	609034	609197	chrX-48	1548	+
-chrXIV	417539	417702	chrXIV-36	1548	+
-chrXVI	593195	593358	chrXVI-53	1546	+
-chrXVI	352501	352664	chrXVI-52	1545	+
-chrII	490563	490726	chrII-60	1544	+
-chrXIV	739370	739533	chrXIV-32	1543	+
-chrXIV	619801	619964	chrXIV-34	1542	+
-chrIV	471623	471786	chrIV-87	1540	+
-chrXV	780611	780774	chrXV-73	1539	+
-chrIV	199693	199856	chrIV-110	1530	+
-chrXIII	68073	68236	chrXIII-49	1529	+
-chrXV	742359	742522	chrXV-68	1528	+
-chrXV	592666	592829	chrXV-97	1527	+
-chrIV	1328497	1328660	chrIV-99	1527	+
-chrV	404429	404592	chrV-39	1524	+
-chrXIV	295660	295823	chrXIV-39	1524	+
-chrXII	787361	787524	chrXII-86	1521	+
-chrIV	221318	221481	chrIV-113	1519	+
-chrX	106162	106325	chrX-55	1515	+
-chrVII	810886	811049	chrVII-47	1513	+
-chrVIII	217977	218140	chrVIII-42	1513	+
-chrX	455800	455963	chrX-45	1512	+
-chrXII	130868	131031	chrXII-88	1508	+
-chrII	216509	216672	chrII-53	1507	+
-chrVII	557704	557867	chrVII-46	1506	+
-chrX	421792	421955	chrX-51	1504	+
-chrXII	193387	193550	chrXII-87	1504	+
-chrXIV	723193	723356	chrXIV-43	1504	+
-chrXVI	267690	267853	chrXVI-61	1504	+
-chrXIV	167944	168107	chrXIV-38	1502	+
-chrXI	114859	115022	chrXI-33	1499	+
-chrX	195399	195562	chrX-42	1497	+
-chrXV	830783	830946	chrXV-76	1496	+
-chrXI	581248	581411	chrXI-36	1495	+
-chrII	84429	84592	chrII-47	1492	+
-chrIV	1031667	1031830	chrIV-86	1490	+
-chrXI	359778	359941	chrXI-39	1490	+
-chrV	509982	510145	chrV-35	1488	+
-chrXII	668986	669149	chrXII-96	1486	+
-chrIV	539007	539170	chrIV-91	1484	+
-chrII	145866	146029	chrII-55	1482	+
-chrXIV	663954	664117	chrXIV-37	1482	+
-chrXIII	353227	353390	chrXIII-55	1479	+
-chrXV	471654	471817	chrXV-94	1479	+
-chrXVI	280137	280300	chrXVI-54	1479	+
-chrX	337835	337998	chrX-41	1477	+
-chrXV	969950	970113	chrXV-87	1477	+
-chrXVI	309831	309994	chrXVI-60	1475	+
-chrXII	48758	48921	chrXII-80	1475	+
-chrIV	1411241	1411404	chrIV-98	1474	+
-chrXII	234756	234919	chrXII-79	1472	+
-chrIX	193335	193498	chrIX-29	1468	+
-chrIV	491222	491385	chrIV-104	1468	+
-chrXV	464456	464619	chrXV-84	1465	+
-chrVII	98692	98855	chrVII-55	1461	+
-chrXV	99411	99574	chrXV-86	1461	+
-chrXII	370176	370339	chrXII-78	1461	+
-chrXV	727189	727352	chrXV-88	1461	+
-chrXVI	114444	114607	chrXVI-66	1458	+
-chrVII	726700	726863	chrVII-51	1456	+
-chrV	424416	424579	chrV-41	1456	+
-chrXIII	477827	477990	chrXIII-54	1455	+
-chrIII	47052	47215	chrIII-19	1452	+
-chrXIII	420288	420451	chrXIII-58	1446	+
-chrXII	332183	332346	chrXII-92	1445	+
-chrX	136348	136511	chrX-47	1444	+
-chrVII	739266	739429	chrVII-53	1443	+
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-chrXVI	882954	883117	chrXVI-96	1077	+
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-chrXI	533669	533832	chrXI-54	1076	+
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-chrXV	579857	580020	chrXV-115	1074	+
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-chrXII	737825	737988	chrXII-112	1072	+
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-chrXV	1028800	1028963	chrXV-120	1069	+
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-chrXV	642164	642327	chrXV-136	1052	+
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-chrIII	238696	238859	chrIII-31	1042	+
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-chrIV	1125192	1125355	chrIV-177	1038	+
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-chrIV	410887	411050	chrIV-193	1036	+
-chrXV	201906	202069	chrXV-126	1035	+
-chrXII	36771	36934	chrXII-117	1034	+
-chrXVI	572417	572580	chrXVI-102	1033	+
-chrX	559200	559363	chrX-71	1033	+
-chrXVI	281774	281937	chrXVI-90	1032	+
-chrIV	524941	525104	chrIV-166	1031	+
-chrXVI	834360	834523	chrXVI-109	1030	+
-chrXI	452023	452186	chrXI-73	1029	+
-chrV	39762	39925	chrV-70	1028	+
-chrV	354993	355156	chrV-71	1028	+
-chrIX	207466	207629	chrIX-46	1026	+
-chrXI	24930	25093	chrXI-66	1026	+
-chrVIII	201410	201573	chrVIII-59	1025	+
-chrII	533476	533639	chrII-80	1024	+
-chrII	492922	493085	chrII-87	1018	+
-chrII	36490	36653	chrII-84	1018	+
-chrIV	42418	42581	chrIV-175	1018	+
-chrXV	683701	683864	chrXV-133	1017	+
-chrXVI	56112	56275	chrXVI-104	1016	+
-chrIV	411428	411591	chrIV-172	1016	+
-chrIV	403516	403679	chrIV-178	1016	+
-chrXI	245708	245871	chrXI-69	1016	+
-chrIV	1172073	1172236	chrIV-169	1015	+
-chrVII	67302	67465	chrVII-118	1014	+
-chrXI	335060	335223	chrXI-75	1014	+
-chrXV	1018823	1018986	chrXV-123	1014	+
-chrXI	340646	340809	chrXI-63	1014	+
-chrXII	950701	950864	chrXII-120	1012	+
-chrXVI	770856	771019	chrXVI-106	1011	+
-chrXV	781564	781727	chrXV-135	1011	+
-chrVIII	242261	242424	chrVIII-60	1008	+
-chrII	356130	356293	chrII-82	1007	+
-chrIII	216350	216513	chrIII-27	1005	+
-chrII	332530	332693	chrII-77	1005	+
-chrXIII	832055	832218	chrXIII-91	1004	+
-chrXIII	661875	662038	chrXIII-92	1004	+
-chrXI	134242	134405	chrXI-70	1003	+
-chrII	45316	45479	chrII-81	1003	+
-chrXIV	631281	631444	chrXIV-71	1003	+
-chrXI	334050	334213	chrXI-72	1002	+
-chrVII	166101	166264	chrVII-103	1002	+
-chrXVI	302801	302964	chrXVI-111	1000	+
-chrVII	205529	205692	chrVII-104	998	+
-chrVIII	74613	74776	chrVIII-58	996	+
-chrIII	142619	142782	chrIII-38	995	+
-chrV	99568	99731	chrV-74	994	+
-chrIV	462383	462546	chrIV-174	994	+
-chrIV	453873	454036	chrIV-173	993	+
-chrVII	31642	31805	chrVII-105	992	+
-chrIV	1276310	1276473	chrIV-168	991	+
-chrXVI	381534	381697	chrXVI-103	991	+
-chrXV	117973	118136	chrXV-127	991	+
-chrXI	284745	284908	chrXI-76	989	+
-chrXII	576476	576639	chrXII-130	989	+
-chrVIII	229012	229175	chrVIII-55	988	+
-chrXII	897841	898004	chrXII-123	987	+
-chrXI	178217	178380	chrXI-71	986	+
-chrI	62689	62852	chrI-18	986	+
-chrI	61164	61327	chrI-17	984	+
-chrXII	651071	651234	chrXII-127	984	+
-chrVII	17918	18081	chrVII-101	983	+
-chrV	153085	153248	chrV-69	983	+
-chrIV	575909	576072	chrIV-188	981	+
-chrXIV	342189	342352	chrXIV-67	980	+
-chrIV	1178266	1178429	chrIV-176	979	+
-chrII	269979	270142	chrII-78	978	+
-chrX	228509	228672	chrX-72	976	+
-chrXI	434929	435092	chrXI-68	975	+
-chrXIV	270000	270163	chrXIV-78	974	+
-chrV	131468	131631	chrV-85	973	+
-chrXI	578227	578390	chrXI-74	971	+
-chrIV	816529	816692	chrIV-153	970	+
-chrXV	712510	712673	chrXV-128	968	+
-chrXVI	627047	627210	chrXVI-116	966	+
-chrXIV	73	236	chrXIV-69	965	+
-chrVIII	170502	170665	chrVIII-66	963	+
-chrXIV	478139	478302	chrXIV-77	963	+
-chrXIV	116671	116834	chrXIV-74	958	+
-chrXII	540585	540748	chrXII-137	957	+
-chrXIV	289657	289820	chrXIV-86	957	+
-chrVII	667853	668016	chrVII-120	955	+
-chrII	310387	310550	chrII-86	954	+
-chrXVI	576162	576325	chrXVI-114	954	+
-chrXV	343360	343523	chrXV-130	953	+
-chrIV	1126072	1126235	chrIV-205	952	+
-chrV	237215	237378	chrV-78	951	+
-chrXIII	625612	625775	chrXIII-94	948	+
-chrXV	925296	925459	chrXV-129	948	+
-chrVII	661802	661965	chrVII-106	947	+
-chrXIII	880617	880780	chrXIII-98	947	+
-chrIV	1020362	1020525	chrIV-181	946	+
-chrV	207339	207502	chrV-79	946	+
-chrII	356697	356860	chrII-83	946	+
-chrIII	157647	157810	chrIII-36	946	+
-chrXI	75512	75675	chrXI-78	946	+
-chrXIII	668191	668354	chrXIII-83	946	+
-chrII	589321	589484	chrII-88	945	+
-chrXIII	751427	751590	chrXIII-96	944	+
-chrXII	611822	611985	chrXII-134	944	+
-chrIX	84834	84997	chrIX-50	943	+
-chrXV	412530	412693	chrXV-132	942	+
-chrXI	307006	307169	chrXI-79	940	+
-chrXVI	251900	252063	chrXVI-112	937	+
-chrXV	391559	391722	chrXV-131	936	+
-chrV	16021	16184	chrV-76	936	+
-chrVI	169610	169773	chrVI-28	934	+
-chrXII	757235	757398	chrXII-133	934	+
-chrXI	173875	174038	chrXI-80	934	+
-chrXV	544477	544640	chrXV-134	933	+
-chrVII	709381	709544	chrVII-113	932	+
-chrXII	545870	546033	chrXII-124	929	+
-chrXV	745304	745467	chrXV-137	927	+
-chrIX	268522	268685	chrIX-52	926	+
-chrV	503865	504028	chrV-80	925	+
-chrXIII	413529	413692	chrXIII-105	925	+
-chrXIV	707494	707657	chrXIV-79	925	+
-chrII	400967	401130	chrII-85	921	+
-chrX	445167	445330	chrX-75	920	+
-chrXIV	233816	233979	chrXIV-81	917	+
-chrXI	130298	130461	chrXI-81	917	+
-chrXIV	310246	310409	chrXIV-85	916	+
-chrXVI	128207	128370	chrXVI-118	916	+
-chrVI	119229	119392	chrVI-30	915	+
-chrXVI	729505	729668	chrXVI-120	915	+
-chrIV	437798	437961	chrIV-186	915	+
-chrVIII	368067	368230	chrVIII-69	914	+
-chrXIV	576213	576376	chrXIV-83	912	+
-chrVII	581736	581899	chrVII-116	912	+
-chrIV	892463	892626	chrIV-190	911	+
-chrXIII	605822	605985	chrXIII-118	910	+
-chrXV	618500	618663	chrXV-139	908	+
-chrV	362351	362514	chrV-84	908	+
-chrXI	143314	143477	chrXI-85	907	+
-chrXIII	540671	540834	chrXIII-99	906	+
-chrII	281015	281178	chrII-92	903	+
-chrXVI	305000	305163	chrXVI-121	902	+
-chrIV	765352	765515	chrIV-182	902	+
-chrIV	148082	148245	chrIV-192	900	+
-chrXII	1011345	1011508	chrXII-140	900	+
-chrXVI	736735	736898	chrXVI-124	898	+
-chrVII	310696	310859	chrVII-117	897	+
-chrXIII	510955	511118	chrXIII-101	893	+
-chrVII	958501	958664	chrVII-123	892	+
-chrXV	316541	316704	chrXV-141	892	+
-chrXI	231628	231791	chrXI-87	891	+
-chrXIII	366785	366948	chrXIII-130	891	+
-chrXV	673797	673960	chrXV-144	890	+
-chrVII	914943	915106	chrVII-122	889	+
-chrIV	940890	941053	chrIV-198	888	+
-chrVII	330707	330870	chrVII-124	887	+
-chrVII	920233	920396	chrVII-111	883	+
-chrIV	693351	693514	chrIV-194	882	+
-chrVIII	423484	423647	chrVIII-70	882	+
-chrIV	699617	699780	chrIV-201	876	+
-chrVII	306417	306580	chrVII-125	873	+
-chrXIII	841734	841897	chrXIII-109	866	+
-chrVIII	67551	67714	chrVIII-78	863	+
-chrVII	131372	131535	chrVII-128	862	+
-chrVIII	296942	297105	chrVIII-72	862	+
-chrXIII	590031	590194	chrXIII-102	862	+
-chrVI	162215	162378	chrVI-35	855	+
-chrX	434845	435008	chrX-79	855	+
-chrII	798939	799102	chrII-98	854	+
-chrVII	452070	452233	chrVII-132	853	+
-chrXIV	301915	302078	chrXIV-89	851	+
-chrVII	307230	307393	chrVII-131	847	+
-chrXIII	195928	196091	chrXIII-106	847	+
-chrVIII	488374	488537	chrVIII-75	846	+
-chrXV	921387	921550	chrXV-143	844	+
-chrIV	617266	617429	chrIV-215	843	+
-chrVII	1065138	1065301	chrVII-127	839	+
-chrX	142	305	chrX-77	838	+
-chrVI	210611	210774	chrVI-31	834	+
-chrVII	576624	576787	chrVII-133	833	+
-chrXIII	146128	146291	chrXIII-108	831	+
-chrXVI	406368	406531	chrXVI-127	831	+
-chrXIII	178259	178422	chrXIII-117	827	+
-chrX	280761	280924	chrX-82	826	+
-chrXV	884100	884263	chrXV-145	822	+
-chrVII	770348	770511	chrVII-148	820	+
-chrXI	127134	127297	chrXI-97	820	+
-chrII	221493	221656	chrII-102	819	+
-chrII	63463	63626	chrII-100	818	+
-chrVIII	382833	382996	chrVIII-80	818	+
-chrII	642682	642845	chrII-104	816	+
-chrIV	447725	447888	chrIV-212	815	+
-chrXVI	135544	135707	chrXVI-134	815	+
-chrVII	1090723	1090886	chrVII-138	814	+
-chrIII	299178	299341	chrIII-39	811	+
-chrVI	153208	153371	chrVI-32	811	+
-chrV	576622	576785	chrV-88	809	+
-chrVIII	505731	505894	chrVIII-76	809	+
-chrIX	355611	355774	chrIX-57	809	+
-chrIV	1181441	1181604	chrIV-218	808	+
-chrVII	640472	640635	chrVII-146	808	+
-chrVII	671981	672144	chrVII-141	806	+
-chrXII	728260	728423	chrXII-154	805	+
-chrXVI	271062	271225	chrXVI-138	805	+
-chrVI	31197	31360	chrVI-33	801	+
-chrXIII	236231	236394	chrXIII-112	800	+
-chrII	484450	484613	chrII-109	797	+
-chrVII	1072807	1072970	chrVII-144	797	+
-chrXIII	510456	510619	chrXIII-119	797	+
-chrXIII	362314	362477	chrXIII-114	793	+
-chrVIII	466970	467133	chrVIII-82	792	+
-chrXIV	372279	372442	chrXIV-105	792	+
-chrIX	220825	220988	chrIX-60	789	+
-chrXIII	253178	253341	chrXIII-120	789	+
-chrVII	987365	987528	chrVII-134	787	+
-chrXII	39562	39725	chrXII-157	784	+
-chrXIV	694830	694993	chrXIV-103	784	+
-chrXIII	127485	127648	chrXIII-127	783	+
-chrIX	394859	395022	chrIX-70	782	+
-chrIV	1261454	1261617	chrIV-219	779	+
-chrXVI	840755	840918	chrXVI-140	777	+
-chrVII	206370	206533	chrVII-151	776	+
-chrX	585835	585998	chrX-89	773	+
-chrII	408623	408786	chrII-110	773	+
-chrXI	614857	615020	chrXI-102	771	+
-chrXVI	730378	730541	chrXVI-141	771	+
-chrIV	657557	657720	chrIV-241	766	+
-chrIV	955360	955523	chrIV-223	761	+
-chrIV	1005336	1005499	chrIV-229	756	+
-chrII	28812	28975	chrII-113	755	+
-chrIV	1436787	1436950	chrIV-227	752	+
-chrXIV	228805	228968	chrXIV-101	752	+
-chrXV	94550	94713	chrXV-154	749	+
-chrXV	299251	299414	chrXV-160	747	+
-chrXV	816981	817144	chrXV-156	746	+
-chrV	414324	414487	chrV-101	745	+
-chrXI	237177	237340	chrXI-106	743	+
-chrIV	1450918	1451081	chrIV-235	735	+
-chrVI	44583	44746	chrVI-34	733	+
-chrVII	986870	987033	chrVII-164	730	+
-chrXV	587998	588161	chrXV-164	724	+
-chrVII	650926	651089	chrVII-154	723	+
-chrIV	386691	386854	chrIV-247	723	+
-chrIV	768160	768323	chrIV-245	722	+
-chrXIII	627934	628097	chrXIII-132	721	+
-chrVII	836809	836972	chrVII-165	718	+
-chrVII	620010	620173	chrVII-167	715	+
-chrIV	1305719	1305882	chrIV-248	713	+
-chrXV	424396	424559	chrXV-167	713	+
-chrIV	721696	721859	chrIV-249	700	+
-chrVI	138502	138665	chrVI-36	697	+
-chrXVI	667446	667609	chrXVI-152	697	+
-chrXVI	529365	529528	chrXVI-153	696	+
-chrI	108644	108807	chrI-26	694	+
-chrVII	968796	968959	chrVII-175	678	+
-chrXI	590020	590183	chrXI-115	670	+
-chrIV	621699	621862	chrIV-257	659	+
-chrV	512183	512346	chrV-103	645	+
-chrXV	716896	717059	chrXV-186	645	+
-chrXV	796999	797162	chrXV-176	641	+
-chrIV	770054	770217	chrIV-264	640	+
-chrIII	197273	197436	chrIII-48	635	+
-chrIV	1090164	1090327	chrIV-268	630	+
-chrXIII	158371	158534	chrXIII-151	630	+
-chrXIV	653122	653285	chrXIV-128	629	+
-chrXIV	51738	51901	chrXIV-129	625	+
-chrIX	102440	102603	chrIX-73	625	+
-chrIII	178835	178998	chrIII-52	622	+
-chrIV	265064	265227	chrIV-280	589	+
-chrXVI	947822	947985	chrXVI-170	588	+
-chrV	545313	545476	chrV-110	581	+
-chrIV	619891	620054	chrIV-292	552	+
-chrIV	1183642	1183805	chrIV-295	545	+
-chrVI	155973	156136	chrVI-46	543	+
-chrIV	690599	690762	chrIV-301	538	+
-chrX	578676	578839	chrX-134	515	+
-chrXII	341117	341280	chrXII-226	492	+
-chrIII	90838	91001	chrIII-102	226	+

scripts/data/reprocessed_mahendrawada_results/peaks/ABF1xstandard/A/ABF1xstandard_A_peaks_summits.txt

@@ -1,1380 +0,0 @@
-chrXV	1084759	1084760	chrXV-5	0	+
-chrVIII	557130	557131	chrVIII-5	0	+
-chrXII	5571	5572	chrXII-22	0	+
-chrVI	4562	4563	chrVI-3	0	+
-chrIV	1525616	1525617	chrIV-9	0	+
-chrI	71058	71059	chrI-1	0	+
-chrII	5728	5729	chrII-2	0	+
-chrV	6320	6321	chrV-13	0	+
-chrVII	905665	905666	chrVII-2	0	+
-chrVIII	122398	122399	chrVIII-1	0	+
-chrIV	1429267	1429268	chrIV-1	0	+
-chrXV	511458	511459	chrXV-2	0	+
-chrVII	428238	428239	chrVII-4	0	+
-chrXII	11077	11078	chrXII-27	0	+
-chrXII	1071796	1071797	chrXII-19	0	+
-chrIV	1011629	1011630	chrIV-2	0	+
-chrVII	1084467	1084468	chrVII-3	0	+
-chrXI	99835	99836	chrXI-1	0	+
-chrXIV	6499	6500	chrXIV-7	0	+
-chrII	452305	452306	chrII-13	0	+
-chrXII	704507	704508	chrXII-20	0	+
-chrXV	988416	988417	chrXV-1	0	+
-chrIV	867783	867784	chrIV-6	0	+
-chrV	192111	192112	chrV-9	0	+
-chrXVI	339570	339571	chrXVI-2	0	+
-chrXIII	408374	408375	chrXIII-1	0	+
-chrXIV	350054	350055	chrXIV-1	0	+
-chrIV	1267118	1267119	chrIV-4	0	+
-chrXII	253346	253347	chrXII-25	0	+
-chrIX	254413	254414	chrIX-1	0	+
-chrXI	80823	80824	chrXI-13	0	+
-chrVI	225202	225203	chrVI-2	0	+
-chrXII	1065348	1065349	chrXII-21	0	+
-chrII	136127	136128	chrII-1	0	+
-chrXVI	6403	6404	chrXVI-11	0	+
-chrXIV	57909	57910	chrXIV-4	0	+
-chrXVI	257158	257159	chrXVI-5	0	+
-chrXIV	355579	355580	chrXIV-8	0	+
-chrXVI	214985	214986	chrXVI-1	0	+
-chrV	123383	123384	chrV-2	0	+
-chrVII	272061	272062	chrVII-6	0	+
-chrVII	23525	23526	chrVII-5	0	+
-chrV	222443	222444	chrV-3	0	+
-chrIX	96658	96659	chrIX-4	0	+
-chrV	85440	85441	chrV-7	0	+
-chrVII	277242	277243	chrVII-1	0	+
-chrX	123401	123402	chrX-2	0	+
-chrXV	83250	83251	chrXV-4	0	+
-chrXIV	283865	283866	chrXIV-5	0	+
-chrVI	95268	95269	chrVI-1	0	+
-chrV	281034	281035	chrV-4	0	+
-chrXVI	645178	645179	chrXVI-3	0	+
-chrXIV	441089	441090	chrXIV-2	0	+
-chrIII	137402	137403	chrIII-1	0	+
-chrVIII	50823	50824	chrVIII-6	0	+
-chrVI	183177	183178	chrVI-5	0	+
-chrV	491234	491235	chrV-6	0	+
-chrXVI	431774	431775	chrXVI-4	0	+
-chrXVI	594151	594152	chrXVI-12	0	+
-chrII	458603	458604	chrII-7	0	+
-chrXV	968210	968211	chrXV-7	0	+
-chrIV	930666	930667	chrIV-5	0	+
-chrXIII	861234	861235	chrXIII-2	0	+
-chrXIII	104418	104419	chrXIII-4	0	+
-chrIV	330750	330751	chrIV-7	0	+
-chrXII	636455	636456	chrXII-24	0	+
-chrXI	385346	385347	chrXI-2	0	+
-chrXI	226188	226189	chrXI-4	0	+
-chrXV	909063	909064	chrXV-3	0	+
-chrIII	61408	61409	chrIII-2	0	+
-chrII	662651	662652	chrII-6	0	+
-chrIV	551120	551121	chrIV-3	0	+
-chrVIII	450920	450921	chrVIII-2	0	+
-chrVI	103433	103434	chrVI-4	0	+
-chrVIII	316185	316186	chrVIII-12	0	+
-chrII	477386	477387	chrII-5	0	+
-chrXV	234040	234041	chrXV-9	0	+
-chrXII	424137	424138	chrXII-28	0	+
-chrVIII	422673	422674	chrVIII-9	0	+
-chrV	268592	268593	chrV-1	0	+
-chrII	193598	193599	chrII-4	0	+
-chrXIII	5326	5327	chrXIII-11	0	+
-chrV	117860	117861	chrV-5	0	+
-chrX	663167	663168	chrX-3	0	+
-chrII	202416	202417	chrII-26	0	+
-chrXIII	675299	675300	chrXIII-3	0	+
-chrXI	38459	38460	chrXI-14	0	+
-chrII	159907	159908	chrII-19	0	+
-chrXV	285818	285819	chrXV-6	0	+
-chrX	94790	94791	chrX-20	0	+
-chrXV	380854	380855	chrXV-22	0	+
-chrI	45410	45411	chrI-2	0	+
-chrXIV	217491	217492	chrXIV-9	0	+
-chrXI	68930	68931	chrXI-22	0	+
-chrVIII	56155	56156	chrVIII-7	0	+
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-chrXI	173957	173958	chrXI-80	0	+
-chrXV	544559	544560	chrXV-134	0	+
-chrVII	709463	709464	chrVII-113	0	+
-chrXII	545952	545953	chrXII-124	0	+
-chrXV	745386	745387	chrXV-137	0	+
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-chrV	503947	503948	chrV-80	0	+
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-chrXI	130380	130381	chrXI-81	0	+
-chrXIV	310328	310329	chrXIV-85	0	+
-chrXVI	128289	128290	chrXVI-118	0	+
-chrVI	119311	119312	chrVI-30	0	+
-chrXVI	729587	729588	chrXVI-120	0	+
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-chrXIV	576295	576296	chrXIV-83	0	+
-chrVII	581818	581819	chrVII-116	0	+
-chrIV	892545	892546	chrIV-190	0	+
-chrXIII	605904	605905	chrXIII-118	0	+
-chrXV	618582	618583	chrXV-139	0	+
-chrV	362433	362434	chrV-84	0	+
-chrXI	143396	143397	chrXI-85	0	+
-chrXIII	540753	540754	chrXIII-99	0	+
-chrII	281097	281098	chrII-92	0	+
-chrXVI	305082	305083	chrXVI-121	0	+
-chrIV	765434	765435	chrIV-182	0	+
-chrIV	148164	148165	chrIV-192	0	+
-chrXII	1011427	1011428	chrXII-140	0	+
-chrXVI	736817	736818	chrXVI-124	0	+
-chrVII	310778	310779	chrVII-117	0	+
-chrXIII	511037	511038	chrXIII-101	0	+
-chrVII	958583	958584	chrVII-123	0	+
-chrXV	316623	316624	chrXV-141	0	+
-chrXI	231710	231711	chrXI-87	0	+
-chrXIII	366867	366868	chrXIII-130	0	+
-chrXV	673879	673880	chrXV-144	0	+
-chrVII	915025	915026	chrVII-122	0	+
-chrIV	940972	940973	chrIV-198	0	+
-chrVII	330789	330790	chrVII-124	0	+
-chrVII	920315	920316	chrVII-111	0	+
-chrIV	693433	693434	chrIV-194	0	+
-chrVIII	423566	423567	chrVIII-70	0	+
-chrIV	699699	699700	chrIV-201	0	+
-chrVII	306499	306500	chrVII-125	0	+
-chrXIII	841816	841817	chrXIII-109	0	+
-chrVIII	67633	67634	chrVIII-78	0	+
-chrVII	131454	131455	chrVII-128	0	+
-chrVIII	297024	297025	chrVIII-72	0	+
-chrXIII	590113	590114	chrXIII-102	0	+
-chrVI	162297	162298	chrVI-35	0	+
-chrX	434927	434928	chrX-79	0	+
-chrII	799021	799022	chrII-98	0	+
-chrVII	452152	452153	chrVII-132	0	+
-chrXIV	301997	301998	chrXIV-89	0	+
-chrVII	307312	307313	chrVII-131	0	+
-chrXIII	196010	196011	chrXIII-106	0	+
-chrVIII	488456	488457	chrVIII-75	0	+
-chrXV	921469	921470	chrXV-143	0	+
-chrIV	617348	617349	chrIV-215	0	+
-chrVII	1065220	1065221	chrVII-127	0	+
-chrX	224	225	chrX-77	0	+
-chrVI	210693	210694	chrVI-31	0	+
-chrVII	576706	576707	chrVII-133	0	+
-chrXIII	146210	146211	chrXIII-108	0	+
-chrXVI	406450	406451	chrXVI-127	0	+
-chrXIII	178341	178342	chrXIII-117	0	+
-chrX	280843	280844	chrX-82	0	+
-chrXV	884182	884183	chrXV-145	0	+
-chrVII	770430	770431	chrVII-148	0	+
-chrXI	127216	127217	chrXI-97	0	+
-chrII	221575	221576	chrII-102	0	+
-chrII	63545	63546	chrII-100	0	+
-chrVIII	382915	382916	chrVIII-80	0	+
-chrII	642764	642765	chrII-104	0	+
-chrIV	447807	447808	chrIV-212	0	+
-chrXVI	135626	135627	chrXVI-134	0	+
-chrVII	1090805	1090806	chrVII-138	0	+
-chrIII	299260	299261	chrIII-39	0	+
-chrVI	153290	153291	chrVI-32	0	+
-chrV	576704	576705	chrV-88	0	+
-chrVIII	505813	505814	chrVIII-76	0	+
-chrIX	355693	355694	chrIX-57	0	+
-chrIV	1181523	1181524	chrIV-218	0	+
-chrVII	640554	640555	chrVII-146	0	+
-chrVII	672063	672064	chrVII-141	0	+
-chrXII	728342	728343	chrXII-154	0	+
-chrXVI	271144	271145	chrXVI-138	0	+
-chrVI	31279	31280	chrVI-33	0	+
-chrXIII	236313	236314	chrXIII-112	0	+
-chrII	484532	484533	chrII-109	0	+
-chrVII	1072889	1072890	chrVII-144	0	+
-chrXIII	510538	510539	chrXIII-119	0	+
-chrXIII	362396	362397	chrXIII-114	0	+
-chrVIII	467052	467053	chrVIII-82	0	+
-chrXIV	372361	372362	chrXIV-105	0	+
-chrIX	220907	220908	chrIX-60	0	+
-chrXIII	253260	253261	chrXIII-120	0	+
-chrVII	987447	987448	chrVII-134	0	+
-chrXII	39644	39645	chrXII-157	0	+
-chrXIV	694912	694913	chrXIV-103	0	+
-chrXIII	127567	127568	chrXIII-127	0	+
-chrIX	394941	394942	chrIX-70	0	+
-chrIV	1261536	1261537	chrIV-219	0	+
-chrXVI	840837	840838	chrXVI-140	0	+
-chrVII	206452	206453	chrVII-151	0	+
-chrX	585917	585918	chrX-89	0	+
-chrII	408705	408706	chrII-110	0	+
-chrXI	614939	614940	chrXI-102	0	+
-chrXVI	730460	730461	chrXVI-141	0	+
-chrIV	657639	657640	chrIV-241	0	+
-chrIV	955442	955443	chrIV-223	0	+
-chrIV	1005418	1005419	chrIV-229	0	+
-chrII	28894	28895	chrII-113	0	+
-chrIV	1436869	1436870	chrIV-227	0	+
-chrXIV	228887	228888	chrXIV-101	0	+
-chrXV	94632	94633	chrXV-154	0	+
-chrXV	299333	299334	chrXV-160	0	+
-chrXV	817063	817064	chrXV-156	0	+
-chrV	414406	414407	chrV-101	0	+
-chrXI	237259	237260	chrXI-106	0	+
-chrIV	1451000	1451001	chrIV-235	0	+
-chrVI	44665	44666	chrVI-34	0	+
-chrVII	986952	986953	chrVII-164	0	+
-chrXV	588080	588081	chrXV-164	0	+
-chrVII	651008	651009	chrVII-154	0	+
-chrIV	386773	386774	chrIV-247	0	+
-chrIV	768242	768243	chrIV-245	0	+
-chrXIII	628016	628017	chrXIII-132	0	+
-chrVII	836891	836892	chrVII-165	0	+
-chrVII	620092	620093	chrVII-167	0	+
-chrIV	1305801	1305802	chrIV-248	0	+
-chrXV	424478	424479	chrXV-167	0	+
-chrIV	721778	721779	chrIV-249	0	+
-chrVI	138584	138585	chrVI-36	0	+
-chrXVI	667528	667529	chrXVI-152	0	+
-chrXVI	529447	529448	chrXVI-153	0	+
-chrI	108726	108727	chrI-26	0	+
-chrVII	968878	968879	chrVII-175	0	+
-chrXI	590102	590103	chrXI-115	0	+
-chrIV	621781	621782	chrIV-257	0	+
-chrV	512265	512266	chrV-103	0	+
-chrXV	716978	716979	chrXV-186	0	+
-chrXV	797081	797082	chrXV-176	0	+
-chrIV	770136	770137	chrIV-264	0	+
-chrIII	197355	197356	chrIII-48	0	+
-chrIV	1090246	1090247	chrIV-268	0	+
-chrXIII	158453	158454	chrXIII-151	0	+
-chrXIV	653204	653205	chrXIV-128	0	+
-chrXIV	51820	51821	chrXIV-129	0	+
-chrIX	102522	102523	chrIX-73	0	+
-chrIII	178917	178918	chrIII-52	0	+
-chrIV	265146	265147	chrIV-280	0	+
-chrXVI	947904	947905	chrXVI-170	0	+
-chrV	545395	545396	chrV-110	0	+
-chrIV	619973	619974	chrIV-292	0	+
-chrIV	1183724	1183725	chrIV-295	0	+
-chrVI	156055	156056	chrVI-46	0	+
-chrIV	690681	690682	chrIV-301	0	+
-chrX	578758	578759	chrX-134	0	+
-chrXII	341199	341200	chrXII-226	0	+
-chrIII	90920	90921	chrIII-102	0	+

scripts/data/reprocessed_mahendrawada_results/peaks/ABF1xstandard/B/ABF1xstandard_B_annotatePeaks.err

@@ -1,46 +0,0 @@
-
-	Using Custom Genome
-	Peak file = results/peaks/ABF1xstandard/B/ABF1xstandard_B_peaks.txt
-	Genome = S288C_reference_sequence_R64-5-1_20240529_chr_normalized.fa
-	Organism = unknown
-	Custom annotation GTF file: /ref/mblab/data/yeast_data/reprocess_mahendrawada/mahendrawada_slurm_pipeline/sacCer3.ensGene.gtf (using transcript_id)
-	Peak/BED file conversion summary:
-		BED/Header formatted lines: 0
-		peakfile formatted lines: 1363
-		Duplicated Peak IDs: 0
-
-	Peak File Statistics:
-		Total Peaks: 1363
-		Redundant Peak IDs: 0
-		Peaks lacking information: 0 (need at least 5 columns per peak)
-		Peaks with misformatted coordinates: 0 (should be integer)
-		Peaks with misformatted strand: 0 (should be either +/- or 0/1)
-
-	Peak file looks good!
-
-	Reading Positions...
-	-----------------------
-	offset=0
-	Finding Closest TSS...
-	Processing custom annotation file...
-	Features that will be considered:
-		exon
-
-	7507 lines contained useful feature information
-	Parsing GTF to make an annotation table from attributes...
-	Features that will be considered:
-		exon
-
-	7507 lines contained useful feature information
-assignGenomeAnnotation: error while loading shared libraries: libstdc++.so.6: cannot open shared object file: No such file or directory
-	Could not find basic annotation file (0.0731365239053083.2.tmp)
-	Features that will be considered:
-		exon
-
-	7507 lines contained useful feature information
-assignGenomeAnnotation: error while loading shared libraries: libstdc++.so.6: cannot open shared object file: No such file or directory
-	Counting Tags in Peaks from each directory...
-	Organism: unknown
-	Outputing Annotation File...
-	Done annotating peaks file
-

scripts/data/reprocessed_mahendrawada_results/peaks/ABF1xstandard/B/ABF1xstandard_B_peaks.bed

@@ -1,1400 +0,0 @@
-# HOMER Peaks
-# Peak finding parameters:
-# tag directory = results/tag_dirs/ABF1xstandard/B
-#
-# total peaks = 1363
-# peak size = 158
-# peaks found using tags on both strands
-# minimum distance between peaks = 316
-# fragment length = 158
-# genome size = 12157101
-# Total tags = 23802183.0
-# Total tags in peaks = 5657640.5
-# Approximate IP efficiency = 23.77%
-# tags per bp = 1.715908
-# expected tags per peak = 271.113
-# maximum tags considered per bp = 195.0
-# effective number of tags used for normalization = 10000000.0
-# Peaks have been centered at maximum tag pile-up
-# FDR rate threshold = 0.001000000
-# FDR effective poisson threshold = 2.444523e-05
-# FDR tag threshold = 341.0
-# number of putative peaks = 4471
-#
-# input tag directory = checseq_promoter_enrichment_slurm_pipeline/control_data/from_correspondance/tag_dir
-# Fold over input required = 10.00
-# Poisson p-value over input required = 1.00e-04
-# Putative peaks filtered by input = 2908
-#
-# size of region used for local filtering = 10000
-# Fold over local region required = 6.00
-# Poisson p-value over local region required = 1.00e-04
-# Putative peaks filtered by local signal = 200
-#
-# cmd = findPeaks results/tag_dirs/ABF1xstandard/B -style factor -i checseq_promoter_enrichment_slurm_pipeline/control_data/from_correspondance/tag_dir -o auto -C 0 -L 6 -F 10
-#
-# Column Headers:
-#PeakID	chr	start	end	strand	Normalized Tag Count	focus ratio	findPeaks Score	Total Tags (normalized to Control Experiment)	Control Tags	Fold Change vs Control	p-value vs Control	Fold Change vs Local	p-value vs Local
-chrXV	1084661	1084820	chrXV-5	12712	+
-chrXII	5491	5650	chrXII-21	8296	+
-chrV	6243	6402	chrV-12	6487	+
-chrI	70965	71124	chrI-1	6344	+
-chrVII	905588	905747	chrVII-1	6184	+
-chrII	5643	5802	chrII-1	6172	+
-chrVIII	557028	557187	chrVIII-6	6043	+
-chrIV	1429201	1429360	chrIV-1	5553	+
-chrVII	1084386	1084545	chrVII-2	5498	+
-chrXI	99751	99910	chrXI-1	5497	+
-chrVIII	122323	122482	chrVIII-1	5487	+
-chrXV	511383	511542	chrXV-3	5414	+
-chrVI	4482	4641	chrVI-3	5350	+
-chrXII	704429	704588	chrXII-20	5280	+
-chrVII	428157	428316	chrVII-6	5257	+
-chrII	452216	452375	chrII-12	5208	+
-chrV	192027	192186	chrV-10	5169	+
-chrXII	1071719	1071878	chrXII-19	5005	+
-chrXII	10994	11153	chrXII-28	4936	+
-chrV	123237	123396	chrV-1	4830	+
-chrXV	988334	988493	chrXV-1	4749	+
-chrIV	867699	867858	chrIV-6	4654	+
-chrVII	271549	271708	chrVII-4	4645	+
-chrXIV	6416	6575	chrXIV-9	4563	+
-chrIV	1011549	1011708	chrIV-4	4542	+
-chrIV	1267037	1267196	chrIV-5	4503	+
-chrIX	254364	254523	chrIX-1	4464	+
-chrXVI	339490	339649	chrXVI-2	4420	+
-chrIII	137321	137480	chrIII-1	4412	+
-chrXIV	355502	355661	chrXIV-5	4385	+
-chrXVI	257066	257225	chrXVI-5	4358	+
-chrVII	23442	23601	chrVII-5	4322	+
-chrXII	253271	253430	chrXII-27	4280	+
-chrXIV	349970	350129	chrXIV-1	4261	+
-chrXI	80746	80905	chrXI-12	4251	+
-chrXIII	408299	408458	chrXIII-2	4251	+
-chrVI	95187	95346	chrVI-1	4237	+
-chrXII	424052	424211	chrXII-26	4228	+
-chrXVI	214892	215051	chrXVI-1	4223	+
-chrX	123333	123492	chrX-2	4199	+
-chrXV	83176	83335	chrXV-4	4179	+
-chrV	491139	491298	chrV-6	4173	+
-chrV	85360	85519	chrV-8	4103	+
-chrIV	930577	930736	chrIV-3	4094	+
-chrIV	1525520	1525679	chrIV-15	4089	+
-chrXII	1065268	1065427	chrXII-22	4056	+
-chrXIV	57826	57985	chrXIV-4	4053	+
-chrII	135982	136141	chrII-4	4024	+
-chrV	280958	281117	chrV-5	3966	+
-chrII	159847	160006	chrII-18	3965	+
-chrII	477306	477465	chrII-5	3943	+
-chrXVI	6323	6482	chrXVI-11	3926	+
-chrXII	636376	636535	chrXII-24	3922	+
-chrVIII	50744	50903	chrVIII-9	3913	+
-chrVIII	450842	451001	chrVIII-2	3908	+
-chrXVI	645098	645257	chrXVI-3	3892	+
-chrV	117779	117938	chrV-3	3891	+
-chrXV	233965	234124	chrXV-9	3877	+
-chrV	222359	222518	chrV-4	3870	+
-chrVI	225182	225341	chrVI-2	3866	+
-chrIV	551144	551303	chrIV-2	3864	+
-chrII	202347	202506	chrII-26	3841	+
-chrIX	96603	96762	chrIX-4	3834	+
-chrXIV	441007	441166	chrXIV-3	3832	+
-chrXVI	594086	594245	chrXVI-10	3827	+
-chrXIV	217415	217574	chrXIV-6	3820	+
-chrXV	908981	909140	chrXV-2	3815	+
-chrIII	61329	61488	chrIII-2	3757	+
-chrI	141787	141946	chrI-2	3747	+
-chrIV	330669	330828	chrIV-7	3700	+
-chrV	268533	268692	chrV-2	3693	+
-chrXVI	431698	431857	chrXVI-4	3683	+
-chrXIII	5242	5401	chrXIII-12	3677	+
-chrII	662570	662729	chrII-2	3663	+
-chrVIII	422591	422750	chrVIII-10	3647	+
-chrXIII	861154	861313	chrXIII-1	3647	+
-chrVII	277128	277287	chrVII-3	3638	+
-chrV	225510	225669	chrV-9	3637	+
-chrIX	384299	384458	chrIX-2	3637	+
-chrXIII	675163	675322	chrXIII-3	3634	+
-chrXI	327800	327959	chrXI-3	3626	+
-chrXV	968127	968286	chrXV-7	3611	+
-chrXV	1015133	1015292	chrXV-19	3610	+
-chrVI	103349	103508	chrVI-4	3609	+
-chrXI	226102	226261	chrXI-5	3599	+
-chrXIII	104341	104500	chrXIII-5	3595	+
-chrXIV	283790	283949	chrXIV-8	3588	+
-chrXV	285738	285897	chrXV-6	3568	+
-chrXI	429035	429194	chrXI-4	3558	+
-chrII	458530	458689	chrII-8	3504	+
-chrII	466355	466514	chrII-24	3503	+
-chrXI	382167	382326	chrXI-6	3484	+
-chrVIII	56082	56241	chrVIII-8	3451	+
-chrXII	921683	921842	chrXII-23	3431	+
-chrXIV	559336	559495	chrXIV-2	3419	+
-chrXV	931255	931414	chrXV-12	3402	+
-chrXI	68857	69016	chrXI-19	3400	+
-chrVI	90548	90707	chrVI-5	3400	+
-chrXI	38382	38541	chrXI-17	3390	+
-chrX	455024	455183	chrX-1	3388	+
-chrX	647170	647329	chrX-7	3380	+
-chrVIII	316141	316300	chrVIII-12	3377	+
-chrX	663086	663245	chrX-3	3360	+
-chrV	69339	69498	chrV-15	3350	+
-chrX	94704	94863	chrX-18	3336	+
-chrXV	380772	380931	chrXV-27	3335	+
-chrV	295114	295273	chrV-13	3331	+
-chrXI	385266	385425	chrXI-2	3327	+
-chrVIII	267179	267338	chrVIII-5	3314	+
-chrIX	382273	382432	chrIX-3	3292	+
-chrVIII	98348	98507	chrVIII-11	3281	+
-chrII	392450	392609	chrII-3	3266	+
-chrXII	187413	187572	chrXII-29	3263	+
-chrIV	211164	211323	chrIV-44	3260	+
-chrXIII	30246	30405	chrXIII-16	3249	+
-chrI	68401	68560	chrI-3	3232	+
-chrV	349572	349731	chrV-21	3225	+
-chrXIII	69924	70083	chrXIII-6	3223	+
-chrII	564983	565142	chrII-16	3222	+
-chrXIV	187786	187945	chrXIV-15	3196	+
-chrVI	183114	183273	chrVI-6	3194	+
-chrV	342536	342695	chrV-17	3193	+
-chrXV	825703	825862	chrXV-8	3190	+
-chrVII	413288	413447	chrVII-12	3181	+
-chrXVI	899835	899994	chrXVI-14	3161	+
-chrXII	789974	790133	chrXII-25	3158	+
-chrXVI	412009	412168	chrXVI-6	3157	+
-chrII	164208	164367	chrII-11	3154	+
-chrX	104678	104837	chrX-13	3143	+
-chrVII	625312	625471	chrVII-14	3136	+
-chrX	683616	683775	chrX-5	3111	+
-chrV	141098	141257	chrV-7	3106	+
-chrXV	109528	109687	chrXV-17	3105	+
-chrXV	431806	431965	chrXV-31	3100	+
-chrI	45324	45483	chrI-4	3084	+
-chrIV	1468773	1468932	chrIV-8	3069	+
-chrII	615104	615263	chrII-9	3050	+
-chrVIII	148835	148994	chrVIII-4	3040	+
-chrXV	168021	168180	chrXV-11	3028	+
-chrXVI	678865	679024	chrXVI-8	3025	+
-chrV	284577	284736	chrV-18	3025	+
-chrII	341752	341911	chrII-6	3003	+
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-chrVIII	236364	236523	chrVIII-7	2990	+
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-chrXIII	557145	557304	chrXIII-15	2301	+
-chrXII	504162	504321	chrXII-86	2289	+
-chrIII	24477	24636	chrIII-7	2284	+
-chrXIV	427329	427488	chrXIV-17	2284	+
-chrXI	665979	666138	chrXI-9	2278	+
-chrXIII	26123	26282	chrXIII-17	2277	+
-chrX	83134	83293	chrX-19	2270	+
-chrVII	76625	76784	chrVII-15	2265	+
-chrXV	479899	480058	chrXV-35	2263	+
-chrXII	108300	108459	chrXII-45	2255	+
-chrXV	472418	472577	chrXV-30	2251	+
-chrVI	184114	184273	chrVI-9	2249	+
-chrVI	5299	5458	chrVI-7	2249	+
-chrXI	258760	258919	chrXI-20	2241	+
-chrXV	186820	186979	chrXV-89	2240	+
-chrXV	493065	493224	chrXV-34	2239	+
-chrIV	1289069	1289228	chrIV-32	2228	+
-chrIV	217336	217495	chrIV-27	2227	+
-chrVII	974549	974708	chrVII-20	2224	+
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-chrVII	1026870	1027029	chrVII-34	2220	+
-chrXV	1009839	1009998	chrXV-64	2219	+
-chrIV	286818	286977	chrIV-42	2219	+
-chrIV	1490358	1490517	chrIV-36	2214	+
-chrXVI	586164	586323	chrXVI-19	2209	+
-chrXIII	517413	517572	chrXIII-21	2206	+
-chrVIII	55369	55528	chrVIII-20	2203	+
-chrXII	566445	566604	chrXII-35	2203	+
-chrII	668601	668760	chrII-31	2200	+
-chrX	525873	526032	chrX-16	2197	+
-chrXI	519041	519200	chrXI-15	2195	+
-chrVI	106386	106545	chrVI-10	2172	+
-chrII	614145	614304	chrII-25	2169	+
-chrIV	1087176	1087335	chrIV-45	2169	+
-chrXV	679006	679165	chrXV-42	2161	+
-chrXV	27532	27691	chrXV-26	2160	+
-chrXII	796597	796756	chrXII-44	2152	+
-chrXII	11845	12004	chrXII-42	2148	+
-chrX	160178	160337	chrX-15	2144	+
-chrVII	859572	859731	chrVII-44	2139	+
-chrVIII	521921	522080	chrVIII-26	2136	+
-chrXVI	425264	425423	chrXVI-25	2129	+
-chrXII	932409	932568	chrXII-46	2128	+
-chrXIII	91904	92063	chrXIII-26	2127	+
-chrXVI	639183	639342	chrXVI-29	2118	+
-chrXVI	666062	666221	chrXVI-50	2115	+
-chrXI	308802	308961	chrXI-25	2114	+
-chrIV	746377	746536	chrIV-43	2112	+
-chrXII	658159	658318	chrXII-39	2111	+
-chrXV	671126	671285	chrXV-38	2105	+
-chrII	336956	337115	chrII-36	2104	+
-chrXVI	942484	942643	chrXVI-41	2104	+
-chrII	74871	75030	chrII-29	2104	+
-chrIV	556661	556820	chrIV-54	2103	+
-chrXVI	502386	502545	chrXVI-20	2099	+
-chrVII	371061	371220	chrVII-22	2091	+
-chrIV	652473	652632	chrIV-69	2082	+
-chrVII	823553	823712	chrVII-18	2076	+
-chrXVI	297152	297311	chrXVI-34	2074	+
-chrIV	1277384	1277543	chrIV-59	2068	+
-chrVII	609750	609909	chrVII-23	2067	+
-chrXII	84238	84397	chrXII-57	2063	+
-chrVII	528644	528803	chrVII-25	2060	+
-chrII	561095	561254	chrII-42	2060	+
-chrXVI	856999	857158	chrXVI-27	2058	+
-chrVIII	10473	10632	chrVIII-18	2058	+
-chrII	697511	697670	chrII-30	2057	+
-chrXV	617	776	chrXV-33	2046	+
-chrXVI	794645	794804	chrXVI-24	2044	+
-chrXIV	783333	783492	chrXIV-18	2037	+
-chrXI	571087	571246	chrXI-21	2035	+
-chrXII	1012181	1012340	chrXII-47	2035	+
-chrIV	909550	909709	chrIV-30	2029	+
-chrXII	585965	586124	chrXII-62	2024	+
-chrV	335466	335625	chrV-24	2023	+
-chrXI	321776	321935	chrXI-23	2022	+
-chrX	432323	432482	chrX-28	2020	+
-chrXIV	507368	507527	chrXIV-26	2019	+
-chrIV	357208	357367	chrIV-35	2017	+
-chrXV	866748	866907	chrXV-39	2014	+
-chrXII	440063	440222	chrXII-48	2014	+
-chrXVI	752028	752187	chrXVI-75	2011	+
-chrIV	628716	628875	chrIV-61	2009	+
-chrXI	513273	513432	chrXI-31	2008	+
-chrII	415581	415740	chrII-23	2007	+
-chrVII	167540	167699	chrVII-29	2000	+
-chrVIII	143673	143832	chrVIII-33	2000	+
-chrVIII	5220	5379	chrVIII-19	1998	+
-chrIX	139358	139517	chrIX-12	1993	+
-chrX	524590	524749	chrX-23	1991	+
-chrXII	721526	721685	chrXII-53	1988	+
-chrVII	229870	230029	chrVII-43	1984	+
-chrII	444769	444928	chrII-48	1983	+
-chrX	651476	651635	chrX-22	1982	+
-chrXIII	754330	754489	chrXIII-24	1979	+
-chrVII	401457	401616	chrVII-30	1978	+
-chrVII	56188	56347	chrVII-38	1978	+
-chrVII	1058815	1058974	chrVII-33	1976	+
-chrXIII	388129	388288	chrXIII-22	1975	+
-chrXII	1064340	1064499	chrXII-43	1972	+
-chrIX	21778	21937	chrIX-11	1969	+
-chrII	164955	165114	chrII-27	1967	+
-chrIV	239733	239892	chrIV-46	1966	+
-chrX	639127	639286	chrX-31	1966	+
-chrIV	894081	894240	chrIV-63	1965	+
-chrXV	304878	305037	chrXV-44	1958	+
-chrIX	166130	166289	chrIX-13	1952	+
-chrXII	198158	198317	chrXII-83	1951	+
-chrV	302469	302628	chrV-23	1945	+
-chrVIII	116025	116184	chrVIII-25	1944	+
-chrIII	163590	163749	chrIII-9	1940	+
-chrXIII	258904	259063	chrXIII-27	1939	+
-chrIV	461418	461577	chrIV-57	1938	+
-chrIV	755290	755449	chrIV-47	1937	+
-chrX	391497	391656	chrX-27	1937	+
-chrXII	673984	674143	chrXII-55	1937	+
-chrXIV	503067	503226	chrXIV-23	1935	+
-chrVIII	461396	461555	chrVIII-22	1930	+
-chrXII	875298	875457	chrXII-51	1930	+
-chrIII	122619	122778	chrIII-10	1928	+
-chrXV	273802	273961	chrXV-43	1922	+
-chrI	29814	29973	chrI-8	1918	+
-chrX	268490	268649	chrX-25	1916	+
-chrX	360867	361026	chrX-29	1915	+
-chrVII	733383	733542	chrVII-26	1914	+
-chrXIII	245895	246054	chrXIII-28	1913	+
-chrIX	292192	292351	chrIX-14	1911	+
-chrXII	837584	837743	chrXII-52	1906	+
-chrXI	518585	518744	chrXI-24	1905	+
-chrIII	225267	225426	chrIII-11	1904	+
-chrVII	423106	423265	chrVII-31	1903	+
-chrXIV	479278	479437	chrXIV-24	1903	+
-chrIV	599967	600126	chrIV-48	1901	+
-chrIV	1459518	1459677	chrIV-52	1898	+
-chrI	124536	124695	chrI-9	1897	+
-chrXV	436610	436769	chrXV-40	1897	+
-chrIV	76988	77147	chrIV-64	1896	+
-chrXIV	138102	138261	chrXIV-25	1895	+
-chrXIV	281743	281902	chrXIV-22	1895	+
-chrII	770584	770743	chrII-32	1894	+
-chrVI	74755	74914	chrVI-12	1893	+
-chrXIII	306592	306751	chrXIII-29	1888	+
-chrXV	949436	949595	chrXV-51	1887	+
-chrXV	218706	218865	chrXV-41	1884	+
-chrIV	507425	507584	chrIV-56	1879	+
-chrXV	1061259	1061418	chrXV-37	1878	+
-chrXIII	551551	551710	chrXIII-25	1877	+
-chrXVI	386639	386798	chrXVI-42	1874	+
-chrXVI	700151	700310	chrXVI-48	1871	+
-chrIX	332740	332899	chrIX-18	1867	+
-chrX	154787	154946	chrX-44	1858	+
-chrIV	307959	308118	chrIV-53	1856	+
-chrII	375981	376140	chrII-33	1855	+
-chrXVI	404248	404407	chrXVI-35	1849	+
-chrIV	432087	432246	chrIV-67	1849	+
-chrXV	762290	762449	chrXV-45	1849	+
-chrX	294437	294596	chrX-24	1848	+
-chrIV	1345345	1345504	chrIV-60	1847	+
-chrX	236622	236781	chrX-40	1845	+
-chrIV	593487	593646	chrIV-74	1844	+
-chrXIV	602477	602636	chrXIV-21	1842	+
-chrX	424267	424426	chrX-32	1837	+
-chrXVI	40473	40632	chrXVI-33	1833	+
-chrXVI	812817	812976	chrXVI-30	1833	+
-chrXV	487124	487283	chrXV-36	1830	+
-chrXII	1028463	1028622	chrXII-49	1826	+
-chrXV	446832	446991	chrXV-69	1825	+
-chrV	409441	409600	chrV-26	1818	+
-chrXII	784458	784617	chrXII-50	1817	+
-chrXVI	581279	581438	chrXVI-47	1813	+
-chrVIII	209350	209509	chrVIII-44	1808	+
-chrVII	884197	884356	chrVII-28	1808	+
-chrXIII	119217	119376	chrXIII-32	1803	+
-chrXVI	108332	108491	chrXVI-39	1791	+
-chrIV	130604	130763	chrIV-62	1786	+
-chrII	618641	618800	chrII-56	1785	+
-chrXI	355767	355926	chrXI-27	1783	+
-chrXVI	527059	527218	chrXVI-32	1776	+
-chrXV	58600	58759	chrXV-49	1775	+
-chrXVI	874967	875126	chrXVI-38	1773	+
-chrII	258136	258295	chrII-40	1773	+
-chrII	426891	427050	chrII-34	1771	+
-chrII	586277	586436	chrII-37	1769	+
-chrVII	74386	74545	chrVII-37	1769	+
-chrXII	665201	665360	chrXII-54	1764	+
-chrXV	160787	160946	chrXV-46	1764	+
-chrXV	161174	161333	chrXV-78	1762	+
-chrIV	1222492	1222651	chrIV-93	1761	+
-chrXIII	347088	347247	chrXIII-33	1760	+
-chrXII	390538	390697	chrXII-56	1756	+
-chrXIII	653359	653518	chrXIII-31	1752	+
-chrX	598455	598614	chrX-35	1750	+
-chrII	760961	761120	chrII-38	1749	+
-chrII	360415	360574	chrII-35	1747	+
-chrIV	512375	512534	chrIV-58	1747	+
-chrIX	267989	268148	chrIX-16	1746	+
-chrII	101247	101406	chrII-44	1746	+
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-chrX	573028	573187	chrX-21	1743	+
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-chrXV	631890	632049	chrXV-55	1729	+
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-chrXV	252800	252959	chrXV-54	1709	+
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-chrXV	619364	619523	chrXV-60	1694	+
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-chrXIII	472880	473039	chrXIII-35	1676	+
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-chrVIII	498803	498962	chrVIII-24	1673	+
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-chrVIII	81790	81949	chrVIII-30	1672	+
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-chrXV	464462	464621	chrXV-62	1660	+
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-chrII	504533	504692	chrII-39	1657	+
-chrXV	1043309	1043468	chrXV-59	1656	+
-chrXV	742386	742545	chrXV-52	1655	+
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-chrXV	370935	371094	chrXV-61	1652	+
-chrXI	21493	21652	chrXI-29	1651	+
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-chrIX	197662	197821	chrIX-21	1643	+
-chrVIII	374455	374614	chrVIII-45	1643	+
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-chrIV	1385743	1385902	chrIV-81	1624	+
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-chrXV	737970	738129	chrXV-57	1623	+
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-chrIV	87289	87448	chrIV-111	1613	+
-chrIV	992825	992984	chrIV-76	1607	+
-chrIV	769221	769380	chrIV-80	1601	+
-chrXV	1059012	1059171	chrXV-48	1601	+
-chrV	100424	100583	chrV-29	1596	+
-chrXII	932056	932215	chrXII-64	1593	+
-chrXIV	739375	739534	chrXIV-28	1593	+
-chrXIII	401436	401595	chrXIII-43	1591	+
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-chrXI	260623	260782	chrXI-30	1587	+
-chrVIII	150825	150984	chrVIII-29	1584	+
-chrXIII	26572	26731	chrXIII-34	1584	+
-chrV	159265	159424	chrV-33	1581	+
-chrX	415872	416031	chrX-39	1580	+
-chrIV	573884	574043	chrIV-98	1580	+
-chrXIV	340072	340231	chrXIV-65	1580	+
-chrIV	1489168	1489327	chrIV-85	1579	+
-chrIV	1224587	1224746	chrIV-75	1577	+
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-chrXV	304336	304495	chrXV-65	1573	+
-chrX	90277	90436	chrX-33	1572	+
-chrXVI	280152	280311	chrXVI-44	1570	+
-chrXVI	719394	719553	chrXVI-73	1570	+
-chrVI	148770	148929	chrVI-16	1569	+
-chrXIV	619798	619957	chrXIV-29	1569	+
-chrIV	126491	126650	chrIV-102	1569	+
-chrIV	452746	452905	chrIV-73	1568	+
-chrVII	598979	599138	chrVII-40	1567	+
-chrXII	212401	212560	chrXII-61	1566	+
-chrII	378811	378970	chrII-43	1566	+
-chrX	608109	608268	chrX-34	1566	+
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-chrXV	69112	69271	chrXV-58	1562	+
-chrXIII	872719	872878	chrXIII-44	1559	+
-chrIV	491226	491385	chrIV-82	1559	+
-chrXIV	412462	412621	chrXIV-30	1559	+
-chrVIII	302063	302222	chrVIII-34	1556	+
-chrXVI	463999	464158	chrXVI-45	1553	+
-chrII	490565	490724	chrII-50	1548	+
-chrXII	826714	826873	chrXII-82	1546	+
-chrIII	127826	127985	chrIII-15	1546	+
-chrXIII	132	291	chrXIII-39	1546	+
-chrXIII	664454	664613	chrXIII-38	1545	+
-chrIII	292593	292752	chrIII-14	1543	+
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-chrXV	901345	901504	chrXV-68	1542	+
-chrII	124853	125012	chrII-52	1540	+
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-chrXIII	287498	287657	chrXIII-45	1534	+
-chrIV	1490757	1490916	chrIV-79	1533	+
-chrXIII	777359	777518	chrXIII-37	1532	+
-chrXIV	663954	664113	chrXIV-33	1531	+
-chrV	522837	522996	chrV-30	1530	+
-chrVI	58324	58483	chrVI-14	1530	+
-chrXII	202703	202862	chrXII-75	1529	+
-chrVI	56067	56226	chrVI-20	1529	+
-chrXII	645862	646021	chrXII-73	1527	+
-chrVIII	245823	245982	chrVIII-32	1525	+
-chrXII	677658	677817	chrXII-65	1522	+
-chrX	609048	609207	chrX-43	1520	+
-chrXII	65489	65648	chrXII-76	1519	+
-chrXII	370179	370338	chrXII-66	1516	+
-chrVII	999302	999461	chrVII-48	1516	+
-chrXII	289721	289880	chrXII-71	1515	+
-chrXIV	418687	418846	chrXIV-35	1514	+
-chrVII	319702	319861	chrVII-74	1514	+
-chrIV	539014	539173	chrIV-83	1512	+
-chrVIII	280291	280450	chrVIII-31	1512	+
-chrXVI	309821	309980	chrXVI-56	1509	+
-chrVII	871623	871782	chrVII-36	1506	+
-chrIV	506137	506296	chrIV-77	1504	+
-chrX	337838	337997	chrX-38	1504	+
-chrVII	557710	557869	chrVII-42	1502	+
-chrXII	404264	404423	chrXII-74	1498	+
-chrXVI	153246	153405	chrXVI-58	1497	+
-chrX	150592	150751	chrX-50	1495	+
-chrXII	722444	722603	chrXII-67	1493	+
-chrVII	726697	726856	chrVII-41	1492	+
-chrXV	552948	553107	chrXV-67	1492	+
-chrXVI	352390	352549	chrXVI-53	1491	+
-chrXIV	662046	662205	chrXIV-34	1490	+
-chrVII	548172	548331	chrVII-47	1487	+
-chrVII	249632	249791	chrVII-60	1486	+
-chrX	195396	195555	chrX-37	1482	+
-chrIX	282994	283153	chrIX-22	1480	+
-chrI	181078	181237	chrI-11	1476	+
-chrXV	733662	733821	chrXV-74	1472	+
-chrII	483619	483778	chrII-49	1472	+
-chrVIII	62669	62828	chrVIII-42	1471	+
-chrXII	54017	54176	chrXII-80	1470	+
-chrII	153819	153978	chrII-45	1469	+
-chrXII	522344	522503	chrXII-72	1465	+
-chrXV	770216	770375	chrXV-71	1465	+
-chrXII	198552	198711	chrXII-81	1465	+
-chrXIII	353226	353385	chrXIII-47	1463	+
-chrXI	417093	417252	chrXI-33	1461	+
-chrXV	417902	418061	chrXV-73	1459	+
-chrXI	114861	115020	chrXI-35	1458	+
-chrXV	371388	371547	chrXV-72	1457	+
-chrII	718286	718445	chrII-46	1456	+
-chrXV	616985	617144	chrXV-84	1453	+
-chrX	554911	555070	chrX-47	1452	+
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-chrV	422604	422763	chrV-35	1449	+
-chrXV	21466	21625	chrXV-75	1449	+
-chrV	242835	242994	chrV-32	1448	+
-chrXII	234559	234718	chrXII-68	1442	+
-chrXV	27957	28116	chrXV-80	1442	+
-chrXI	551374	551533	chrXI-41	1441	+
-chrXIII	895513	895672	chrXIII-52	1436	+
-chrXIV	413377	413536	chrXIV-44	1434	+
-chrXV	274663	274822	chrXV-81	1432	+
-chrIV	471625	471784	chrIV-86	1430	+
-chrVIII	116	275	chrVIII-36	1429	+
-chrXI	164613	164772	chrXI-32	1428	+
-chrXII	764215	764374	chrXII-79	1427	+
-chrIV	227009	227168	chrIV-88	1425	+
-chrXI	581195	581354	chrXI-37	1424	+
-chrXVI	731939	732098	chrXVI-51	1423	+
-chrVIII	255915	256074	chrVIII-37	1423	+
-chrXI	216899	217058	chrXI-34	1422	+
-chrXV	1003653	1003812	chrXV-79	1422	+
-chrXIV	495136	495295	chrXIV-37	1417	+
-chrIV	589541	589700	chrIV-89	1415	+
-chrXV	426250	426409	chrXV-76	1413	+
-chrX	106161	106320	chrX-56	1413	+
-chrVII	483087	483246	chrVII-46	1411	+
-chrIV	234458	234617	chrIV-97	1409	+
-chrVIII	341462	341621	chrVIII-35	1409	+
-chrXVI	653867	654026	chrXVI-57	1407	+
-chrVII	147883	148042	chrVII-49	1406	+
-chrXVI	114452	114611	chrXVI-66	1403	+
-chrXV	384928	385087	chrXV-77	1402	+
-chrIV	1355744	1355903	chrIV-109	1402	+
-chrXIII	68076	68235	chrXIII-51	1400	+
-chrVII	848344	848503	chrVII-64	1398	+
-chrII	645248	645407	chrII-58	1397	+
-chrXVI	340612	340771	chrXVI-55	1392	+
-chrX	538531	538690	chrX-53	1392	+
-chrIII	246707	246866	chrIII-21	1390	+
-chrXII	130883	131042	chrXII-85	1390	+
-chrXIV	335810	335969	chrXIV-40	1389	+
-chrXIV	289107	289266	chrXIV-46	1387	+
-chrIV	199691	199850	chrIV-113	1384	+
-chrXVI	866507	866666	chrXVI-77	1383	+
-chrVIII	151329	151488	chrVIII-39	1382	+
-chrXVI	378571	378730	chrXVI-64	1382	+
-chrV	260179	260338	chrV-34	1382	+
-chrXV	780582	780741	chrXV-82	1381	+
-chrXII	539696	539855	chrXII-114	1381	+
-chrIV	1135570	1135729	chrIV-101	1380	+
-chrXI	463542	463701	chrXI-43	1380	+
-chrXIV	380897	381056	chrXIV-42	1380	+
-chrIV	172221	172380	chrIV-124	1377	+
-chrXVI	450850	451009	chrXVI-61	1375	+
-chrXV	253739	253898	chrXV-86	1373	+
-chrIV	229629	229788	chrIV-99	1373	+
-chrXIII	483568	483727	chrXIII-50	1372	+
-chrXIII	892467	892626	chrXIII-48	1371	+
-chrXIV	723195	723354	chrXIV-52	1369	+
-chrXIV	417559	417718	chrXIV-43	1368	+
-chrXIV	63079	63238	chrXIV-38	1366	+
-chrIV	562889	563048	chrIV-92	1363	+
-chrV	343246	343405	chrV-46	1363	+
-chrX	448938	449097	chrX-54	1362	+
-chrVII	702752	702911	chrVII-58	1361	+
-chrIV	1420870	1421029	chrIV-91	1360	+
-chrXV	55264	55423	chrXV-83	1355	+
-chrXIV	568112	568271	chrXIV-39	1354	+
-chrVII	433254	433413	chrVII-51	1352	+
-chrXII	668991	669150	chrXII-101	1351	+
-chrVII	366106	366265	chrVII-52	1351	+
-chrVII	84374	84533	chrVII-73	1350	+
-chrX	646639	646798	chrX-45	1349	+
-chrX	211776	211935	chrX-41	1347	+
-chrIV	489268	489427	chrIV-94	1347	+
-chrVII	810894	811053	chrVII-56	1346	+
-chrXV	117556	117715	chrXV-88	1345	+
-chrIV	321918	322077	chrIV-100	1344	+
-chrXV	471658	471817	chrXV-99	1343	+
-chrII	297930	298089	chrII-53	1341	+
-chrIV	976497	976656	chrIV-96	1340	+
-chrI	139141	139300	chrI-12	1340	+
-chrXIV	651895	652054	chrXIV-48	1339	+
-chrXI	263111	263270	chrXI-40	1338	+
-chrXII	589067	589226	chrXII-90	1337	+
-chrXIII	652046	652205	chrXIII-49	1335	+
-chrIX	415804	415963	chrIX-30	1333	+
-chrIV	1251780	1251939	chrIV-108	1329	+
-chrIX	173757	173916	chrIX-28	1329	+
-chrXIII	798051	798210	chrXIII-53	1329	+
-chrVIII	293684	293843	chrVIII-38	1329	+
-chrXI	592678	592837	chrXI-38	1328	+
-chrIII	279894	280053	chrIII-23	1327	+
-chrII	186622	186781	chrII-57	1326	+
-chrIV	1050361	1050520	chrIV-90	1326	+
-chrXVI	746960	747119	chrXVI-54	1325	+
-chrV	400908	401067	chrV-41	1325	+
-chrXV	288178	288337	chrXV-85	1324	+
-chrII	84430	84589	chrII-47	1322	+
-chrX	466307	466466	chrX-48	1322	+
-chrXVI	227914	228073	chrXVI-63	1320	+
-chrVII	555523	555682	chrVII-67	1317	+
-chrXIV	518987	519146	chrXIV-41	1316	+
-chrII	628587	628746	chrII-51	1315	+
-chrVII	788350	788509	chrVII-55	1314	+
-chrV	509986	510145	chrV-37	1313	+
-chrXIII	773031	773190	chrXIII-57	1312	+
-chrXVI	593198	593357	chrXVI-59	1312	+
-chrIX	338756	338915	chrIX-27	1311	+
-chrII	145870	146029	chrII-54	1310	+
-chrXVI	919116	919275	chrXVI-82	1310	+
-chrV	174758	174917	chrV-47	1309	+
-chrVII	601356	601515	chrVII-57	1308	+
-chrVII	123368	123527	chrVII-62	1308	+
-chrXV	755106	755265	chrXV-94	1307	+
-chrV	424489	424648	chrV-49	1307	+
-chrVIII	227289	227448	chrVIII-41	1306	+
-chrXIII	482521	482680	chrXIII-55	1306	+
-chrIX	232649	232808	chrIX-29	1305	+
-chrII	407311	407470	chrII-55	1305	+
-chrXV	779560	779719	chrXV-87	1303	+
-chrXV	99410	99569	chrXV-98	1302	+
-chrIV	1411235	1411394	chrIV-106	1299	+
-chrIX	99632	99791	chrIX-26	1299	+
-chrXVI	267688	267847	chrXVI-71	1299	+
-chrVII	591668	591827	chrVII-70	1295	+
-chrXIV	295653	295812	chrXIV-49	1294	+
-chrVII	739119	739278	chrVII-59	1294	+
-chrV	27312	27471	chrV-42	1294	+
-chrI	76215	76374	chrI-15	1293	+
-chrXIII	886619	886778	chrXIII-56	1293	+
-chrXIV	167943	168102	chrXIV-50	1292	+
-chrXV	649075	649234	chrXV-112	1291	+
-chrV	462282	462441	chrV-40	1290	+
-chrII	782338	782497	chrII-64	1289	+
-chrX	189497	189656	chrX-51	1289	+
-chrIV	1031989	1032148	chrIV-105	1285	+
-chrXI	11653	11812	chrXI-39	1284	+
-chrXII	505896	506055	chrXII-89	1283	+
-chrXIII	204225	204384	chrXIII-58	1283	+
-chrIV	74179	74338	chrIV-118	1282	+
-chrIV	1168871	1169030	chrIV-121	1282	+
-chrXVI	695072	695231	chrXVI-60	1282	+
-chrVII	700773	700932	chrVII-54	1281	+
-chrXI	82736	82895	chrXI-52	1280	+
-chrXII	781526	781685	chrXII-110	1280	+
-chrIV	1328494	1328653	chrIV-110	1277	+
-chrXII	282610	282769	chrXII-91	1277	+
-chrVII	534897	535056	chrVII-61	1276	+
-chrVII	976841	977000	chrVII-65	1276	+
-chrVII	149096	149255	chrVII-53	1276	+
-chrXV	592674	592833	chrXV-105	1274	+
-chrXIV	631962	632121	chrXIV-53	1273	+
-chrXVI	462171	462330	chrXVI-68	1267	+
-chrII	216517	216676	chrII-60	1267	+
-chrXV	891780	891939	chrXV-97	1267	+
-chrIV	926981	927140	chrIV-126	1264	+
-chrVII	951327	951486	chrVII-63	1261	+
-chrIII	78259	78418	chrIII-19	1260	+
-chrV	42165	42324	chrV-45	1260	+
-chrX	136345	136504	chrX-49	1256	+
-chrXV	410085	410244	chrXV-92	1256	+
-chrXV	830770	830929	chrXV-95	1256	+
-chrXIV	301224	301383	chrXIV-47	1256	+
-chrXIII	124327	124486	chrXIII-62	1255	+
-chrXII	48761	48920	chrXII-84	1254	+
-chrII	60908	61067	chrII-59	1250	+
-chrXII	787362	787521	chrXII-100	1250	+
-chrIV	465245	465404	chrIV-104	1249	+
-chrXIII	220932	221091	chrXIII-61	1249	+
-chrIV	117384	117543	chrIV-114	1246	+
-chrXV	1039518	1039677	chrXV-91	1246	+
-chrV	212134	212293	chrV-53	1246	+
-chrII	45313	45472	chrII-62	1243	+
-chrXII	193386	193545	chrXII-103	1243	+
-chrXI	462815	462974	chrXI-44	1242	+
-chrVI	54980	55139	chrVI-18	1241	+
-chrV	453118	453277	chrV-44	1239	+
-chrXIV	276110	276269	chrXIV-51	1237	+
-chrXV	520606	520765	chrXV-96	1237	+
-chrXV	61142	61301	chrXV-100	1236	+
-chrXV	1004320	1004479	chrXV-90	1236	+
-chrII	605952	606111	chrII-61	1234	+
-chrII	36472	36631	chrII-71	1232	+
-chrVIII	217984	218143	chrVIII-48	1231	+
-chrVII	185728	185887	chrVII-68	1229	+
-chrXIII	901419	901578	chrXIII-80	1229	+
-chrII	89560	89719	chrII-63	1229	+
-chrXVI	572423	572582	chrXVI-70	1228	+
-chrIV	519750	519909	chrIV-115	1227	+
-chrVII	649067	649226	chrVII-71	1225	+
-chrIV	410889	411048	chrIV-148	1223	+
-chrVII	324752	324911	chrVII-69	1221	+
-chrIV	1189757	1189916	chrIV-112	1218	+
-chrXI	554639	554798	chrXI-49	1218	+
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-chrXV	391561	391720	chrXV-120	1017	+
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-chrII	589325	589484	chrII-80	1003	+
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-chrXV	898501	898660	chrXV-121	1000	+
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-chrXIII	243887	244046	chrXIII-85	998	+
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-chrXI	362253	362412	chrXI-65	990	+
-chrXV	943448	943607	chrXV-127	990	+
-chrXIII	424677	424836	chrXIII-72	989	+
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-chrXII	47516	47675	chrXII-119	987	+
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-chrVIII	21191	21350	chrVIII-57	986	+
-chrXIII	625624	625783	chrXIII-87	985	+
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-chrVII	656564	656723	chrVII-89	983	+
-chrXVI	627055	627214	chrXVI-104	983	+
-chrXIII	545732	545891	chrXIII-101	983	+
-chrXIV	230708	230867	chrXIV-74	981	+
-chrXI	288562	288721	chrXI-63	978	+
-chrIV	1476794	1476953	chrIV-157	976	+
-chrV	464839	464998	chrV-62	975	+
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-chrXV	618502	618661	chrXV-123	975	+
-chrXVI	246640	246799	chrXVI-100	974	+
-chrV	207343	207502	chrV-71	973	+
-chrVII	576625	576784	chrVII-104	973	+
-chrXI	284728	284887	chrXI-66	973	+
-chrX	445139	445298	chrX-70	972	+
-chrXIV	116673	116832	chrXIV-72	972	+
-chrXV	807079	807238	chrXV-133	971	+
-chrXVI	576165	576324	chrXVI-102	969	+
-chrXV	925309	925468	chrXV-122	968	+
-chrXVI	882952	883111	chrXVI-111	966	+
-chrIV	1005335	1005494	chrIV-166	964	+
-chrVII	914928	915087	chrVII-106	963	+
-chrIII	238697	238856	chrIII-31	962	+
-chrV	382354	382513	chrV-51	962	+
-chrV	16024	16183	chrV-68	960	+
-chrIV	1288069	1288228	chrIV-168	960	+
-chrVII	310698	310857	chrVII-102	959	+
-chrIV	520941	521100	chrIV-169	957	+
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-chrIV	453879	454038	chrIV-170	957	+
-chrIV	765351	765510	chrIV-159	955	+
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-chrVIII	382830	382989	chrVIII-62	955	+
-chrV	503866	504025	chrV-72	954	+
-chrVI	263248	263407	chrVI-29	954	+
-chrXIII	896826	896985	chrXIII-96	952	+
-chrXV	673799	673958	chrXV-135	952	+
-chrVII	67305	67464	chrVII-125	951	+
-chrXI	635263	635422	chrXI-57	951	+
-chrXIV	258216	258375	chrXIV-75	950	+
-chrXI	38852	39011	chrXI-67	950	+
-chrI	84571	84730	chrI-17	948	+
-chrXVI	406370	406529	chrXVI-103	947	+
-chrV	237197	237356	chrV-70	946	+
-chrVII	1022012	1022171	chrVII-82	946	+
-chrVIII	170517	170676	chrVIII-65	945	+
-chrII	798940	799099	chrII-88	943	+
-chrVI	269878	270037	chrVI-25	942	+
-chrXIII	413520	413679	chrXIII-103	942	+
-chrXIV	332229	332388	chrXIV-88	938	+
-chrV	13400	13559	chrV-74	937	+
-chrVIII	296943	297102	chrVIII-66	936	+
-chrXIII	56204	56363	chrXIII-95	933	+
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-chrIV	645073	645232	chrIV-173	931	+
-chrI	20914	21073	chrI-16	931	+
-chrXII	1043514	1043673	chrXII-124	930	+
-chrIII	103479	103638	chrIII-26	929	+
-chrIV	892473	892632	chrIV-172	927	+
-chrXV	315540	315699	chrXV-128	927	+
-chrXIII	832057	832216	chrXIII-99	925	+
-chrII	786968	787127	chrII-87	923	+
-chrII	408592	408751	chrII-86	923	+
-chrXI	178220	178379	chrXI-68	923	+
-chrVII	779898	780057	chrVII-112	920	+
-chrIV	88030	88189	chrIV-175	920	+
-chrXVI	76370	76529	chrXVI-107	920	+
-chrII	269978	270137	chrII-85	917	+
-chrVII	750234	750393	chrVII-105	916	+
-chrI	48313	48472	chrI-18	914	+
-chrXVI	271064	271223	chrXVI-108	912	+
-chrX	138	297	chrX-71	908	+
-chrXI	549400	549559	chrXI-72	908	+
-chrIX	83097	83256	chrIX-49	906	+
-chrIX	78	237	chrIX-46	905	+
-chrXIV	310249	310408	chrXIV-80	903	+
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-chrIV	1301058	1301217	chrIV-174	902	+
-chrVIII	242257	242416	chrVIII-63	902	+
-chrX	342178	342337	chrX-72	901	+
-chrVII	1069318	1069477	chrVII-117	901	+
-chrXIV	233814	233973	chrXIV-77	900	+
-chrXV	642160	642319	chrXV-146	896	+
-chrIV	310197	310356	chrIV-177	896	+
-chrIV	1386510	1386669	chrIV-180	896	+
-chrVI	31196	31355	chrVI-24	895	+
-chrXII	611824	611983	chrXII-130	894	+
-chrXVI	801969	802128	chrXVI-109	893	+
-chrXI	143307	143466	chrXI-75	891	+
-chrXI	153015	153174	chrXI-76	891	+
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-chrXII	39549	39708	chrXII-132	890	+
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-chrXII	633409	633568	chrXII-131	889	+
-chrXV	400114	400273	chrXV-131	888	+
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-chrXI	231627	231786	chrXI-71	886	+
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-chrX	442612	442771	chrX-75	881	+
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-chrXV	201909	202068	chrXV-134	877	+
-chrVII	987363	987522	chrVII-110	875	+
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-chrXII	728260	728419	chrXII-127	870	+
-chrX	434844	435003	chrX-73	870	+
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-chrXI	614855	615014	chrXI-77	866	+
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-chrXVI	95200	95359	chrXVI-118	861	+
-chrIV	721698	721857	chrIV-193	860	+
-chrXV	299243	299402	chrXV-137	859	+
-chrVII	1065144	1065303	chrVII-123	859	+
-chrXII	395667	395826	chrXII-139	859	+
-chrXIII	223947	224106	chrXIII-107	856	+
-chrXVI	99150	99309	chrXVI-122	856	+
-chrXIV	301888	302047	chrXIV-84	855	+
-chrXIII	236229	236388	chrXIII-106	854	+
-chrVIII	423488	423647	chrVIII-71	854	+
-chrIV	1049549	1049708	chrIV-182	852	+
-chrXII	540585	540744	chrXII-152	852	+
-chrVII	770335	770494	chrVII-135	851	+
-chrVI	162218	162377	chrVI-33	850	+
-chrIII	65697	65856	chrIII-38	849	+
-chrXII	1011334	1011493	chrXII-137	846	+
-chrVII	1050226	1050385	chrVII-136	844	+
-chrXIV	107304	107463	chrXIV-86	844	+
-chrXIII	195922	196081	chrXIII-108	843	+
-chrII	356126	356285	chrII-95	843	+
-chrIV	814232	814391	chrIV-199	838	+
-chrVII	1090741	1090900	chrVII-121	837	+
-chrVIII	229012	229171	chrVIII-67	837	+
-chrXIII	605820	605979	chrXIII-120	837	+
-chrXVI	251888	252047	chrXVI-125	835	+
-chrII	28817	28976	chrII-96	835	+
-chrIV	955359	955518	chrIV-195	835	+
-chrI	61191	61350	chrI-19	833	+
-chrII	642670	642829	chrII-94	833	+
-chrXV	745308	745467	chrXV-139	833	+
-chrVII	650906	651065	chrVII-131	833	+
-chrVIII	488378	488537	chrVIII-74	830	+
-chrXVI	326350	326509	chrXVI-126	830	+
-chrXI	173875	174034	chrXI-69	827	+
-chrXV	1040622	1040781	chrXV-141	824	+
-chrVIII	466972	467131	chrVIII-78	822	+
-chrXV	94553	94712	chrXV-140	822	+
-chrXVI	56798	56957	chrXVI-127	819	+
-chrVIII	67553	67712	chrVIII-81	819	+
-chrVII	774426	774585	chrVII-133	817	+
-chrXII	828047	828206	chrXII-143	817	+
-chrXIII	500844	501003	chrXIII-109	817	+
-chrVII	412216	412375	chrVII-139	816	+
-chrXII	410274	410433	chrXII-154	814	+
-chrIV	940894	941053	chrIV-200	814	+
-chrXI	75509	75668	chrXI-78	813	+
-chrXVI	840761	840920	chrXVI-129	812	+
-chrVI	169597	169756	chrVI-31	812	+
-chrII	63406	63565	chrII-100	812	+
-chrXVI	128197	128356	chrXVI-132	810	+
-chrX	280763	280922	chrX-77	808	+
-chrVII	584130	584289	chrVII-137	808	+
-chrVII	17917	18076	chrVII-132	806	+
-chrVII	640513	640672	chrVII-144	806	+
-chrIV	447728	447887	chrIV-202	805	+
-chrIV	1125220	1125379	chrIV-198	804	+
-chrXIII	905966	906125	chrXIII-110	804	+
-chrXI	452032	452191	chrXI-87	803	+
-chrXII	553875	554034	chrXII-150	797	+
-chrXV	761386	761545	chrXV-136	795	+
-chrXIII	366786	366945	chrXIII-135	795	+
-chrVII	620015	620174	chrVII-143	794	+
-chrV	53435	53594	chrV-91	794	+
-chrV	39762	39921	chrV-82	793	+
-chrIV	657561	657720	chrIV-220	792	+
-chrIX	394875	395034	chrIX-63	791	+
-chrXI	630528	630687	chrXI-91	791	+
-chrXIV	372279	372438	chrXIV-92	790	+
-chrIV	617274	617433	chrIV-212	790	+
-chrIV	386915	387074	chrIV-194	789	+
-chrXI	434927	435086	chrXI-82	787	+
-chrXIII	668196	668355	chrXIII-104	787	+
-chrXI	130300	130459	chrXI-92	785	+
-chrXVI	729510	729669	chrXVI-134	783	+
-chrXIII	627947	628106	chrXIII-115	782	+
-chrIV	462382	462541	chrIV-204	780	+
-chrXIV	707495	707654	chrXIV-89	779	+
-chrXIII	178265	178424	chrXIII-126	778	+
-chrXV	424399	424558	chrXV-148	778	+
-chrIX	220829	220988	chrIX-59	777	+
-chrIV	1181443	1181602	chrIV-217	777	+
-chrIX	268528	268687	chrIX-51	777	+
-chrX	414857	415016	chrX-85	776	+
-chrIV	768177	768336	chrIV-205	774	+
-chrVII	772070	772229	chrVII-148	774	+
-chrIV	1236235	1236394	chrIV-207	772	+
-chrIV	403511	403670	chrIV-208	772	+
-chrXIII	510458	510617	chrXIII-113	770	+
-chrVII	1072815	1072974	chrVII-151	767	+
-chrIV	770055	770214	chrIV-215	766	+
-chrXI	127144	127303	chrXI-96	766	+
-chrVII	228479	228638	chrVII-150	766	+
-chrIX	84825	84984	chrIX-55	760	+
-chrXIV	694827	694986	chrXIV-105	759	+
-chrVI	233747	233906	chrVI-34	756	+
-chrIV	1020367	1020526	chrIV-216	753	+
-chrVII	206376	206535	chrVII-154	752	+
-chrXII	828419	828578	chrXII-162	752	+
-chrX	75612	75771	chrX-86	750	+
-chrXIII	253179	253338	chrXIII-117	746	+
-chrXIII	667213	667372	chrXIII-122	746	+
-chrII	602289	602448	chrII-108	744	+
-chrXV	588002	588161	chrXV-154	744	+
-chrX	73541	73700	chrX-92	740	+
-chrXVI	67060	67219	chrXVI-139	736	+
-chrIX	150275	150434	chrIX-62	733	+
-chrXI	590022	590181	chrXI-102	733	+
-chrVII	968810	968969	chrVII-162	725	+
-chrIV	1450941	1451100	chrIV-222	717	+
-chrIII	299181	299340	chrIII-40	714	+
-chrXVI	730384	730543	chrXVI-148	713	+
-chrX	68963	69122	chrX-89	712	+
-chrXIII	590027	590186	chrXIII-123	709	+
-chrVII	836814	836973	chrVII-161	702	+
-chrIV	715463	715622	chrIV-233	698	+
-chrIX	310848	311007	chrIX-66	697	+
-chrIV	1305713	1305872	chrIV-230	695	+
-chrX	36524	36683	chrX-97	693	+
-chrIX	102424	102583	chrIX-65	685	+
-chrVII	306430	306589	chrVII-164	684	+
-chrV	545312	545471	chrV-98	683	+
-chrXIII	127483	127642	chrXIII-138	671	+
-chrX	59001	59160	chrX-103	669	+
-chrVI	44586	44745	chrVI-35	667	+
-chrXV	796997	797156	chrXV-172	660	+
-chrXIII	158405	158564	chrXIII-144	659	+
-chrIV	621704	621863	chrIV-247	657	+
-chrIX	131938	132097	chrIX-72	647	+
-chrIV	1261462	1261621	chrIV-249	645	+
-chrXVI	947825	947984	chrXVI-158	645	+
-chrXV	716897	717056	chrXV-184	637	+
-chrIII	178837	178996	chrIII-46	634	+
-chrXII	730539	730698	chrXII-190	633	+
-chrIV	619897	620056	chrIV-254	624	+
-chrXIV	51729	51888	chrXIV-122	618	+
-chrXVI	77	236	chrXVI-156	607	+
-chrIII	197274	197433	chrIII-50	606	+
-chrXIV	653103	653262	chrXIV-125	600	+
-chrVI	138560	138719	chrVI-43	587	+
-chrXII	341119	341278	chrXII-204	582	+
-chrIV	1183642	1183801	chrIV-273	581	+
-chrI	198566	198725	chrI-31	558	+
-chrV	311513	311672	chrV-112	542	+
-chrVI	155987	156146	chrVI-45	534	+
-chrIV	265057	265216	chrIV-311	530	+
-chrX	578692	578851	chrX-134	525	+
-chrIII	90853	91012	chrIII-107	200	+

scripts/data/reprocessed_mahendrawada_results/peaks/ABF1xstandard/B/ABF1xstandard_B_peaks_summits.txt

@@ -1,1363 +0,0 @@
-chrXV	1084741	1084742	chrXV-5	0	+
-chrXII	5571	5572	chrXII-21	0	+
-chrV	6323	6324	chrV-12	0	+
-chrI	71045	71046	chrI-1	0	+
-chrVII	905668	905669	chrVII-1	0	+
-chrII	5723	5724	chrII-1	0	+
-chrVIII	557108	557109	chrVIII-6	0	+
-chrIV	1429281	1429282	chrIV-1	0	+
-chrVII	1084466	1084467	chrVII-2	0	+
-chrXI	99831	99832	chrXI-1	0	+
-chrVIII	122403	122404	chrVIII-1	0	+
-chrXV	511463	511464	chrXV-3	0	+
-chrVI	4562	4563	chrVI-3	0	+
-chrXII	704509	704510	chrXII-20	0	+
-chrVII	428237	428238	chrVII-6	0	+
-chrII	452296	452297	chrII-12	0	+
-chrV	192107	192108	chrV-10	0	+
-chrXII	1071799	1071800	chrXII-19	0	+
-chrXII	11074	11075	chrXII-28	0	+
-chrV	123317	123318	chrV-1	0	+
-chrXV	988414	988415	chrXV-1	0	+
-chrIV	867779	867780	chrIV-6	0	+
-chrVII	271629	271630	chrVII-4	0	+
-chrXIV	6496	6497	chrXIV-9	0	+
-chrIV	1011629	1011630	chrIV-4	0	+
-chrIV	1267117	1267118	chrIV-5	0	+
-chrIX	254444	254445	chrIX-1	0	+
-chrXVI	339570	339571	chrXVI-2	0	+
-chrIII	137401	137402	chrIII-1	0	+
-chrXIV	355582	355583	chrXIV-5	0	+
-chrXVI	257146	257147	chrXVI-5	0	+
-chrVII	23522	23523	chrVII-5	0	+
-chrXII	253351	253352	chrXII-27	0	+
-chrXIV	350050	350051	chrXIV-1	0	+
-chrXI	80826	80827	chrXI-12	0	+
-chrXIII	408379	408380	chrXIII-2	0	+
-chrVI	95267	95268	chrVI-1	0	+
-chrXII	424132	424133	chrXII-26	0	+
-chrXVI	214972	214973	chrXVI-1	0	+
-chrX	123413	123414	chrX-2	0	+
-chrXV	83256	83257	chrXV-4	0	+
-chrV	491219	491220	chrV-6	0	+
-chrV	85440	85441	chrV-8	0	+
-chrIV	930657	930658	chrIV-3	0	+
-chrIV	1525600	1525601	chrIV-15	0	+
-chrXII	1065348	1065349	chrXII-22	0	+
-chrXIV	57906	57907	chrXIV-4	0	+
-chrII	136062	136063	chrII-4	0	+
-chrV	281038	281039	chrV-5	0	+
-chrII	159927	159928	chrII-18	0	+
-chrII	477386	477387	chrII-5	0	+
-chrXVI	6403	6404	chrXVI-11	0	+
-chrXII	636456	636457	chrXII-24	0	+
-chrVIII	50824	50825	chrVIII-9	0	+
-chrVIII	450922	450923	chrVIII-2	0	+
-chrXVI	645178	645179	chrXVI-3	0	+
-chrV	117859	117860	chrV-3	0	+
-chrXV	234045	234046	chrXV-9	0	+
-chrV	222439	222440	chrV-4	0	+
-chrVI	225262	225263	chrVI-2	0	+
-chrIV	551224	551225	chrIV-2	0	+
-chrII	202427	202428	chrII-26	0	+
-chrIX	96683	96684	chrIX-4	0	+
-chrXIV	441087	441088	chrXIV-3	0	+
-chrXVI	594166	594167	chrXVI-10	0	+
-chrXIV	217495	217496	chrXIV-6	0	+
-chrXV	909061	909062	chrXV-2	0	+
-chrIII	61409	61410	chrIII-2	0	+
-chrI	141867	141868	chrI-2	0	+
-chrIV	330749	330750	chrIV-7	0	+
-chrV	268613	268614	chrV-2	0	+
-chrXVI	431778	431779	chrXVI-4	0	+
-chrXIII	5322	5323	chrXIII-12	0	+
-chrII	662650	662651	chrII-2	0	+
-chrVIII	422671	422672	chrVIII-10	0	+
-chrXIII	861234	861235	chrXIII-1	0	+
-chrVII	277208	277209	chrVII-3	0	+
-chrV	225590	225591	chrV-9	0	+
-chrIX	384379	384380	chrIX-2	0	+
-chrXIII	675243	675244	chrXIII-3	0	+
-chrXI	327880	327881	chrXI-3	0	+
-chrXV	968207	968208	chrXV-7	0	+
-chrXV	1015213	1015214	chrXV-19	0	+
-chrVI	103429	103430	chrVI-4	0	+
-chrXI	226182	226183	chrXI-5	0	+
-chrXIII	104421	104422	chrXIII-5	0	+
-chrXIV	283870	283871	chrXIV-8	0	+
-chrXV	285818	285819	chrXV-6	0	+
-chrXI	429115	429116	chrXI-4	0	+
-chrII	458610	458611	chrII-8	0	+
-chrII	466435	466436	chrII-24	0	+
-chrXI	382247	382248	chrXI-6	0	+
-chrVIII	56162	56163	chrVIII-8	0	+
-chrXII	921763	921764	chrXII-23	0	+
-chrXIV	559416	559417	chrXIV-2	0	+
-chrXV	931335	931336	chrXV-12	0	+
-chrXI	68937	68938	chrXI-19	0	+
-chrVI	90628	90629	chrVI-5	0	+
-chrXI	38462	38463	chrXI-17	0	+
-chrX	455104	455105	chrX-1	0	+
-chrX	647250	647251	chrX-7	0	+
-chrVIII	316221	316222	chrVIII-12	0	+
-chrX	663166	663167	chrX-3	0	+
-chrV	69419	69420	chrV-15	0	+
-chrX	94784	94785	chrX-18	0	+
-chrXV	380852	380853	chrXV-27	0	+
-chrV	295194	295195	chrV-13	0	+
-chrXI	385346	385347	chrXI-2	0	+
-chrVIII	267259	267260	chrVIII-5	0	+
-chrIX	382353	382354	chrIX-3	0	+
-chrVIII	98428	98429	chrVIII-11	0	+
-chrII	392530	392531	chrII-3	0	+
-chrXII	187493	187494	chrXII-29	0	+
-chrIV	211244	211245	chrIV-44	0	+
-chrXIII	30326	30327	chrXIII-16	0	+
-chrI	68481	68482	chrI-3	0	+
-chrV	349652	349653	chrV-21	0	+
-chrXIII	70004	70005	chrXIII-6	0	+
-chrII	565063	565064	chrII-16	0	+
-chrXIV	187866	187867	chrXIV-15	0	+
-chrVI	183194	183195	chrVI-6	0	+
-chrV	342616	342617	chrV-17	0	+
-chrXV	825783	825784	chrXV-8	0	+
-chrVII	413368	413369	chrVII-12	0	+
-chrXVI	899915	899916	chrXVI-14	0	+
-chrXII	790054	790055	chrXII-25	0	+
-chrXVI	412089	412090	chrXVI-6	0	+
-chrII	164288	164289	chrII-11	0	+
-chrX	104758	104759	chrX-13	0	+
-chrVII	625392	625393	chrVII-14	0	+
-chrX	683696	683697	chrX-5	0	+
-chrV	141178	141179	chrV-7	0	+
-chrXV	109608	109609	chrXV-17	0	+
-chrXV	431886	431887	chrXV-31	0	+
-chrI	45404	45405	chrI-4	0	+
-chrIV	1468853	1468854	chrIV-8	0	+
-chrII	615184	615185	chrII-9	0	+
-chrVIII	148915	148916	chrVIII-4	0	+
-chrXV	168101	168102	chrXV-11	0	+
-chrXVI	678945	678946	chrXVI-8	0	+
-chrV	284657	284658	chrV-18	0	+
-chrII	341832	341833	chrII-6	0	+
-chrXI	500023	500024	chrXI-10	0	+
-chrVIII	236444	236445	chrVIII-7	0	+
-chrII	203268	203269	chrII-7	0	+
-chrXIV	34441	34442	chrXIV-13	0	+
-chrII	193594	193595	chrII-10	0	+
-chrXIII	170053	170054	chrXIII-4	0	+
-chrIV	43839	43840	chrIV-39	0	+
-chrXVI	520440	520441	chrXVI-12	0	+
-chrXV	514902	514903	chrXV-13	0	+
-chrXVI	493294	493295	chrXVI-7	0	+
-chrIV	836179	836180	chrIV-41	0	+
-chrX	120145	120146	chrX-12	0	+
-chrIX	7649	7650	chrIX-5	0	+
-chrXI	322530	322531	chrXI-8	0	+
-chrXIII	434497	434498	chrXIII-7	0	+
-chrXVI	455166	455167	chrXVI-16	0	+
-chrXIII	271885	271886	chrXIII-11	0	+
-chrVIII	48239	48240	chrVIII-3	0	+
-chrXII	605447	605448	chrXII-30	0	+
-chrV	570533	570534	chrV-14	0	+
-chrXI	118530	118531	chrXI-7	0	+
-chrVII	398027	398028	chrVII-8	0	+
-chrIV	222112	222113	chrIV-23	0	+
-chrIII	262822	262823	chrIII-13	0	+
-chrXIV	604896	604897	chrXIV-7	0	+
-chrIV	1524776	1524777	chrIV-14	0	+
-chrI	229565	229566	chrI-7	0	+
-chrXV	494403	494404	chrXV-14	0	+
-chrXIV	622668	622669	chrXIV-19	0	+
-chrXIV	400753	400754	chrXIV-16	0	+
-chrII	812523	812524	chrII-15	0	+
-chrXV	1091133	1091134	chrXV-18	0	+
-chrXV	1084073	1084074	chrXV-21	0	+
-chrIV	884461	884462	chrIV-10	0	+
-chrXV	978772	978773	chrXV-10	0	+
-chrIV	133032	133033	chrIV-12	0	+
-chrXV	443914	443915	chrXV-16	0	+
-chrXIII	209233	209234	chrXIII-13	0	+
-chrXII	158	159	chrXII-36	0	+
-chrV	569749	569750	chrV-16	0	+
-chrIV	1195164	1195165	chrIV-13	0	+
-chrIV	1362534	1362535	chrIV-26	0	+
-chrV	303621	303622	chrV-11	0	+
-chrIX	321231	321232	chrIX-10	0	+
-chrX	521864	521865	chrX-46	0	+
-chrXV	505467	505468	chrXV-15	0	+
-chrIV	501567	501568	chrIV-18	0	+
-chrX	745043	745044	chrX-6	0	+
-chrXIII	701420	701421	chrXIII-10	0	+
-chrXV	216447	216448	chrXV-22	0	+
-chrIV	1013981	1013982	chrIV-16	0	+
-chrX	703814	703815	chrX-4	0	+
-chrXI	408259	408260	chrXI-14	0	+
-chrXII	924757	924758	chrXII-37	0	+
-chrIV	848184	848185	chrIV-11	0	+
-chrII	292289	292290	chrII-19	0	+
-chrXII	839586	839587	chrXII-38	0	+
-chrIV	1242942	1242943	chrIV-9	0	+
-chrXI	317382	317383	chrXI-16	0	+
-chrXIII	6186	6187	chrXIII-9	0	+
-chrII	555951	555952	chrII-13	0	+
-chrVI	176809	176810	chrVI-8	0	+
-chrXV	606397	606398	chrXV-32	0	+
-chrV	492216	492217	chrV-20	0	+
-chrVII	547476	547477	chrVII-13	0	+
-chrVII	677765	677766	chrVII-7	0	+
-chrI	190281	190282	chrI-5	0	+
-chrX	7628	7629	chrX-8	0	+
-chrXVI	491838	491839	chrXVI-15	0	+
-chrVII	640	641	chrVII-9	0	+
-chrX	257024	257025	chrX-9	0	+
-chrIX	6873	6874	chrIX-9	0	+
-chrIII	315937	315938	chrIII-3	0	+
-chrVIII	190318	190319	chrVIII-21	0	+
-chrI	661	662	chrI-6	0	+
-chrIV	369339	369340	chrIV-19	0	+
-chrXVI	7071	7072	chrXVI-18	0	+
-chrXIV	405819	405820	chrXIV-20	0	+
-chrX	6760	6761	chrX-17	0	+
-chrIII	953	954	chrIII-5	0	+
-chrIV	417084	417085	chrIV-38	0	+
-chrIV	215921	215922	chrIV-25	0	+
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-chrIV	1261542	1261543	chrIV-249	0	+
-chrXVI	947905	947906	chrXVI-158	0	+
-chrXV	716977	716978	chrXV-184	0	+
-chrIII	178917	178918	chrIII-46	0	+
-chrXII	730619	730620	chrXII-190	0	+
-chrIV	619977	619978	chrIV-254	0	+
-chrXIV	51809	51810	chrXIV-122	0	+
-chrXVI	157	158	chrXVI-156	0	+
-chrIII	197354	197355	chrIII-50	0	+
-chrXIV	653183	653184	chrXIV-125	0	+
-chrVI	138640	138641	chrVI-43	0	+
-chrXII	341199	341200	chrXII-204	0	+
-chrIV	1183722	1183723	chrIV-273	0	+
-chrI	198646	198647	chrI-31	0	+
-chrV	311593	311594	chrV-112	0	+
-chrVI	156067	156068	chrVI-45	0	+
-chrIV	265137	265138	chrIV-311	0	+
-chrX	578772	578773	chrX-134	0	+
-chrIII	90933	90934	chrIII-107	0	+

scripts/data/reprocessed_mahendrawada_results/peaks/ABF1xstandard/C/ABF1xstandard_C_annotatePeaks.err

@@ -1,46 +0,0 @@
-
-	Using Custom Genome
-	Peak file = results/peaks/ABF1xstandard/C/ABF1xstandard_C_peaks.txt
-	Genome = S288C_reference_sequence_R64-5-1_20240529_chr_normalized.fa
-	Organism = unknown
-	Custom annotation GTF file: /ref/mblab/data/yeast_data/reprocess_mahendrawada/mahendrawada_slurm_pipeline/sacCer3.ensGene.gtf (using transcript_id)
-	Peak/BED file conversion summary:
-		BED/Header formatted lines: 0
-		peakfile formatted lines: 1279
-		Duplicated Peak IDs: 0
-
-	Peak File Statistics:
-		Total Peaks: 1279
-		Redundant Peak IDs: 0
-		Peaks lacking information: 0 (need at least 5 columns per peak)
-		Peaks with misformatted coordinates: 0 (should be integer)
-		Peaks with misformatted strand: 0 (should be either +/- or 0/1)
-
-	Peak file looks good!
-
-	Reading Positions...
-	-----------------------
-	offset=0
-	Finding Closest TSS...
-	Processing custom annotation file...
-	Features that will be considered:
-		exon
-
-	7507 lines contained useful feature information
-	Parsing GTF to make an annotation table from attributes...
-	Features that will be considered:
-		exon
-
-	7507 lines contained useful feature information
-assignGenomeAnnotation: error while loading shared libraries: libstdc++.so.6: cannot open shared object file: No such file or directory
-	Could not find basic annotation file (0.280391523688198.2.tmp)
-	Features that will be considered:
-		exon
-
-	7507 lines contained useful feature information
-assignGenomeAnnotation: error while loading shared libraries: libstdc++.so.6: cannot open shared object file: No such file or directory
-	Counting Tags in Peaks from each directory...
-	Organism: unknown
-	Outputing Annotation File...
-	Done annotating peaks file
-

scripts/data/reprocessed_mahendrawada_results/peaks/ABF1xstandard/C/ABF1xstandard_C_peaks.bed

@@ -1,1316 +0,0 @@
-# HOMER Peaks
-# Peak finding parameters:
-# tag directory = results/tag_dirs/ABF1xstandard/C
-#
-# total peaks = 1279
-# peak size = 162
-# peaks found using tags on both strands
-# minimum distance between peaks = 324
-# fragment length = 162
-# genome size = 12157099
-# Total tags = 26325081.0
-# Total tags in peaks = 5871964.0
-# Approximate IP efficiency = 22.31%
-# tags per bp = 1.905920
-# expected tags per peak = 308.759
-# maximum tags considered per bp = 216.0
-# effective number of tags used for normalization = 10000000.0
-# Peaks have been centered at maximum tag pile-up
-# FDR rate threshold = 0.001000000
-# FDR effective poisson threshold = 2.523649e-05
-# FDR tag threshold = 383.0
-# number of putative peaks = 4459
-#
-# input tag directory = checseq_promoter_enrichment_slurm_pipeline/control_data/from_correspondance/tag_dir
-# Fold over input required = 10.00
-# Poisson p-value over input required = 1.00e-04
-# Putative peaks filtered by input = 2981
-#
-# size of region used for local filtering = 10000
-# Fold over local region required = 6.00
-# Poisson p-value over local region required = 1.00e-04
-# Putative peaks filtered by local signal = 199
-#
-# cmd = findPeaks results/tag_dirs/ABF1xstandard/C -style factor -i checseq_promoter_enrichment_slurm_pipeline/control_data/from_correspondance/tag_dir -o auto -C 0 -L 6 -F 10
-#
-# Column Headers:
-#PeakID	chr	start	end	strand	Normalized Tag Count	focus ratio	findPeaks Score	Total Tags (normalized to Control Experiment)	Control Tags	Fold Change vs Control	p-value vs Control	Fold Change vs Local	p-value vs Local
-chrXV	1084676	1084839	chrXV-7	10451	+
-chrXII	5489	5652	chrXII-17	7294	+
-chrI	70976	71139	chrI-1	6144	+
-chrV	6238	6401	chrV-13	5670	+
-chrVII	905586	905749	chrVII-2	5527	+
-chrII	452203	452366	chrII-9	5126	+
-chrXI	99781	99944	chrXI-1	5059	+
-chrVIII	122316	122479	chrVIII-1	5027	+
-chrII	5646	5809	chrII-7	5018	+
-chrVIII	557025	557188	chrVIII-12	4993	+
-chrVII	428156	428319	chrVII-4	4930	+
-chrVI	4480	4643	chrVI-5	4925	+
-chrXV	511376	511539	chrXV-3	4859	+
-chrV	123232	123395	chrV-1	4819	+
-chrXII	704428	704591	chrXII-16	4802	+
-chrIV	867701	867864	chrIV-3	4788	+
-chrXII	1071477	1071640	chrXII-15	4757	+
-chrXV	988332	988495	chrXV-1	4593	+
-chrV	192029	192192	chrV-10	4551	+
-chrXI	80740	80903	chrXI-14	4448	+
-chrIV	1429185	1429348	chrIV-1	4443	+
-chrIV	1267036	1267199	chrIV-4	4426	+
-chrVII	1084461	1084624	chrVII-5	4395	+
-chrVII	271546	271709	chrVII-1	4374	+
-chrIX	254331	254494	chrIX-1	4344	+
-chrXII	10992	11155	chrXII-24	4289	+
-chrIII	137319	137482	chrIII-1	4251	+
-chrXIV	355497	355660	chrXIV-6	4234	+
-chrII	136045	136208	chrII-1	4211	+
-chrIV	1525534	1525697	chrIV-24	4196	+
-chrXIV	57813	57976	chrXIV-4	4174	+
-chrXVI	257076	257239	chrXVI-5	4151	+
-chrXII	424055	424218	chrXII-20	4145	+
-chrVII	23449	23612	chrVII-3	4085	+
-chrXII	253276	253439	chrXII-22	4074	+
-chrII	159834	159997	chrII-21	4050	+
-chrXV	233958	234121	chrXV-8	4048	+
-chrXVI	594081	594244	chrXVI-8	3999	+
-chrXVI	339488	339651	chrXVI-4	3911	+
-chrIII	61325	61488	chrIII-2	3910	+
-chrIV	330668	330831	chrIV-6	3864	+
-chrIX	96577	96740	chrIX-4	3844	+
-chrIV	930574	930737	chrIV-5	3820	+
-chrXVI	214944	215107	chrXVI-1	3806	+
-chrX	123319	123482	chrX-3	3798	+
-chrIV	1011547	1011710	chrIV-9	3777	+
-chrXV	83168	83331	chrXV-4	3773	+
-chrVI	95186	95349	chrVI-1	3768	+
-chrXV	978686	978849	chrXV-5	3763	+
-chrVIII	50717	50880	chrVIII-10	3751	+
-chrXIV	349955	350118	chrXIV-1	3748	+
-chrVI	90531	90694	chrVI-2	3731	+
-chrXIV	217407	217570	chrXIV-5	3727	+
-chrXV	908983	909146	chrXV-2	3727	+
-chrVIII	422615	422778	chrVIII-7	3727	+
-chrV	280953	281116	chrV-3	3709	+
-chrXI	226106	226269	chrXI-4	3689	+
-chrVIII	450838	451001	chrVIII-2	3688	+
-chrXII	636373	636536	chrXII-21	3682	+
-chrXIV	6417	6580	chrXIV-12	3682	+
-chrV	85358	85521	chrV-9	3672	+
-chrXIV	440955	441118	chrXIV-3	3669	+
-chrXI	327795	327958	chrXI-3	3664	+
-chrII	477304	477467	chrII-3	3636	+
-chrXIV	283783	283946	chrXIV-7	3634	+
-chrXVI	645097	645260	chrXVI-2	3617	+
-chrXIII	104336	104499	chrXIII-3	3610	+
-chrV	117778	117941	chrV-2	3597	+
-chrXIII	675216	675379	chrXIII-2	3585	+
-chrII	466355	466518	chrII-23	3549	+
-chrVI	103351	103514	chrVI-4	3546	+
-chrVIII	267171	267334	chrVIII-3	3541	+
-chrXI	38377	38540	chrXI-17	3540	+
-chrIV	551038	551201	chrIV-2	3533	+
-chrIX	384269	384432	chrIX-2	3527	+
-chrI	141879	142042	chrI-3	3526	+
-chrVIII	98338	98501	chrVIII-6	3505	+
-chrXV	968128	968291	chrXV-11	3476	+
-chrXI	68860	69023	chrXI-19	3476	+
-chrXVI	431692	431855	chrXVI-3	3475	+
-chrV	225503	225666	chrV-6	3467	+
-chrVI	224949	225112	chrVI-3	3465	+
-chrV	491152	491315	chrV-8	3440	+
-chrXI	382161	382324	chrXI-6	3412	+
-chrXII	921686	921849	chrXII-19	3400	+
-chrII	202348	202511	chrII-30	3381	+
-chrII	458531	458694	chrII-5	3372	+
-chrI	68396	68559	chrI-2	3368	+
-chrV	222361	222524	chrV-5	3356	+
-chrXIII	30246	30409	chrXIII-16	3348	+
-chrV	349571	349734	chrV-19	3344	+
-chrVII	413292	413455	chrVII-11	3342	+
-chrX	454942	455105	chrX-1	3333	+
-chrXI	428974	429137	chrXI-5	3326	+
-chrX	94707	94870	chrX-21	3323	+
-chrVIII	316136	316299	chrVIII-13	3321	+
-chrXVI	899829	899992	chrXVI-9	3313	+
-chrXVI	6323	6486	chrXVI-15	3295	+
-chrXII	789964	790127	chrXII-18	3291	+
-chrV	268530	268693	chrV-4	3286	+
-chrX	683610	683773	chrX-2	3280	+
-chrXV	1091053	1091216	chrXV-9	3268	+
-chrXIII	861152	861315	chrXIII-5	3265	+
-chrXV	285738	285901	chrXV-6	3258	+
-chrX	104676	104839	chrX-10	3230	+
-chrXIV	559338	559501	chrXIV-2	3214	+
-chrVIII	56073	56236	chrVIII-8	3210	+
-chrII	662569	662732	chrII-6	3210	+
-chrV	342537	342700	chrV-17	3195	+
-chrXV	109527	109690	chrXV-17	3193	+
-chrXV	431802	431965	chrXV-26	3183	+
-chrXII	76	239	chrXII-27	3180	+
-chrIX	7567	7730	chrIX-5	3165	+
-chrXV	931253	931416	chrXV-15	3165	+
-chrIX	382272	382435	chrIX-3	3157	+
-chrXV	1015108	1015271	chrXV-25	3149	+
-chrXIII	69950	70113	chrXIII-6	3138	+
-chrIV	1468768	1468931	chrIV-7	3135	+
-chrV	69337	69500	chrV-18	3124	+
-chrII	392554	392717	chrII-2	3122	+
-chrIV	884386	884549	chrIV-13	3121	+
-chrXII	1065266	1065429	chrXII-23	3095	+
-chrVIII	148829	148992	chrVIII-5	3087	+
-chrXI	385389	385552	chrXI-2	3076	+
-chrXII	605369	605532	chrXII-26	3067	+
-chrV	295111	295274	chrV-15	3055	+
-chrVII	277125	277288	chrVII-6	3048	+
-chrXV	168019	168182	chrXV-10	3045	+
-chrVIII	48160	48323	chrVIII-4	3025	+
-chrXI	499937	500100	chrXI-10	3022	+
-chrXV	216377	216540	chrXV-20	3019	+
-chrV	141116	141279	chrV-7	2985	+
-chrI	229486	229649	chrI-7	2980	+
-chrXVI	678856	679019	chrXVI-7	2973	+
-chrXVI	493210	493373	chrXVI-6	2971	+
-chrIII	262744	262907	chrIII-13	2970	+
-chrV	284660	284823	chrV-12	2969	+
-chrXIV	622599	622762	chrXIV-20	2969	+
-chrXIII	408502	408665	chrXIII-1	2959	+
-chrXIV	187675	187838	chrXIV-14	2959	+
-chrII	812445	812608	chrII-12	2951	+
-chrX	647172	647335	chrX-12	2950	+
-chrXII	187413	187576	chrXII-25	2945	+
-chrXIII	5456	5619	chrXIII-12	2944	+
-chrXIV	400675	400838	chrXIV-16	2944	+
-chrXIV	34363	34526	chrXIV-15	2935	+
-chrIV	1524689	1524852	chrIV-14	2925	+
-chrXII	924602	924765	chrXII-31	2922	+
-chrX	662996	663159	chrX-5	2913	+
-chrIV	501480	501643	chrIV-11	2910	+
-chrII	564982	565145	chrII-19	2905	+
-chrXV	1083996	1084159	chrXV-19	2901	+
-chrXIII	169978	170141	chrXIII-4	2893	+
-chrII	193517	193680	chrII-10	2887	+
-chrII	615094	615257	chrII-11	2885	+
-chrXVI	520435	520598	chrXVI-11	2883	+
-chrIV	132948	133111	chrIV-10	2880	+
-chrI	190195	190358	chrI-4	2878	+
-chrXV	514826	514989	chrXV-12	2871	+
-chrXV	825698	825861	chrXV-13	2868	+
-chrVII	397955	398118	chrVII-7	2860	+
-chrXI	322447	322610	chrXI-9	2844	+
-chrXIII	271787	271950	chrXIII-11	2839	+
-chrVII	625395	625558	chrVII-14	2834	+
-chrX	744970	745133	chrX-6	2834	+
-chrII	203189	203352	chrII-4	2832	+
-chrXV	494321	494484	chrXV-16	2807	+
-chrXIII	6111	6274	chrXIII-7	2805	+
-chrXVI	412014	412177	chrXVI-10	2802	+
-chrXI	317295	317458	chrXI-16	2800	+
-chrXIII	701340	701503	chrXIII-10	2795	+
-chrI	579	742	chrI-6	2790	+
-chrV	569671	569834	chrV-16	2783	+
-chrIX	321143	321306	chrIX-9	2782	+
-chrII	164207	164370	chrII-16	2774	+
-chrXV	505393	505556	chrXV-14	2772	+
-chrVIII	236366	236529	chrVIII-9	2768	+
-chrIV	221953	222116	chrIV-21	2767	+
-chrXIII	434416	434579	chrXIII-9	2762	+
-chrXI	118452	118615	chrXI-7	2758	+
-chrV	570152	570315	chrV-14	2756	+
-chrVII	559	722	chrVII-8	2751	+
-chrX	7548	7711	chrX-9	2746	+
-chrIV	1242864	1243027	chrIV-8	2739	+
-chrXVI	6984	7147	chrXVI-14	2738	+
-chrII	292207	292370	chrII-20	2728	+
-chrI	45323	45486	chrI-5	2724	+
-chrIV	1362445	1362608	chrIV-26	2714	+
-chrIV	1195084	1195247	chrIV-16	2707	+
-chrII	341750	341913	chrII-13	2705	+
-chrIII	867	1030	chrIII-4	2704	+
-chrXV	443778	443941	chrXV-18	2699	+
-chrIV	674	837	chrIV-17	2692	+
-chrXIII	453660	453823	chrXIII-8	2689	+
-chrX	703819	703982	chrX-4	2674	+
-chrIII	315859	316022	chrIII-3	2656	+
-chrVI	176724	176887	chrVI-7	2652	+
-chrXIV	604830	604993	chrXIV-8	2650	+
-chrIV	211162	211325	chrIV-52	2647	+
-chrX	120060	120223	chrX-14	2647	+
-chrIV	43756	43919	chrIV-50	2642	+
-chrX	545375	545538	chrX-8	2630	+
-chrIV	848091	848254	chrIV-12	2626	+
-chrXVI	455087	455250	chrXVI-21	2623	+
-chrXIII	209148	209311	chrXIII-14	2619	+
-chrIV	369211	369374	chrIV-20	2618	+
-chrXI	402248	402411	chrXI-11	2618	+
-chrX	116412	116575	chrX-18	2612	+
-chrIV	1084737	1084900	chrIV-23	2609	+
-chrXII	877574	877737	chrXII-28	2607	+
-chrXIII	923645	923808	chrXIII-23	2599	+
-chrX	256937	257100	chrX-7	2595	+
-chrIII	228859	229022	chrIII-6	2571	+
-chrVIII	556172	556335	chrVIII-17	2561	+
-chrIV	836097	836260	chrIV-48	2559	+
-chrXIV	198599	198762	chrXIV-9	2557	+
-chrIX	439137	439300	chrIX-6	2554	+
-chrX	521787	521950	chrX-44	2547	+
-chrVII	953648	953811	chrVII-20	2546	+
-chrII	140880	141043	chrII-8	2546	+
-chrIV	807995	808158	chrIV-19	2543	+
-chrVI	183095	183258	chrVI-10	2535	+
-chrXII	125163	125326	chrXII-30	2526	+
-chrXV	232155	232318	chrXV-24	2525	+
-chrIV	1013888	1014051	chrIV-15	2522	+
-chrVII	1000329	1000492	chrVII-9	2521	+
-chrXIII	379251	379414	chrXIII-20	2519	+
-chrII	595747	595910	chrII-18	2511	+
-chrXVI	88145	88308	chrXVI-22	2504	+
-chrII	6378	6541	chrII-15	2503	+
-chrIV	1062969	1063132	chrIV-58	2501	+
-chrVIII	54494	54657	chrVIII-14	2490	+
-chrV	303534	303697	chrV-11	2481	+
-chrXVI	610026	610189	chrXVI-31	2480	+
-chrXV	128253	128416	chrXV-29	2480	+
-chrXVI	75316	75479	chrXVI-13	2468	+
-chrXI	408173	408336	chrXI-20	2457	+
-chrIV	546135	546298	chrIV-18	2456	+
-chrII	555875	556038	chrII-14	2455	+
-chrXIII	302842	303005	chrXIII-17	2455	+
-chrXII	241873	242036	chrXII-33	2452	+
-chrVIII	126048	126211	chrVIII-18	2434	+
-chrXII	260667	260830	chrXII-54	2433	+
-chrV	492124	492287	chrV-20	2430	+
-chrIV	392436	392599	chrIV-28	2430	+
-chrXVI	163830	163993	chrXVI-29	2429	+
-chrVII	809960	810123	chrVII-26	2428	+
-chrVII	560247	560410	chrVII-15	2428	+
-chrXVI	491716	491879	chrXVI-16	2428	+
-chrIV	1080629	1080792	chrIV-29	2427	+
-chrIV	1229766	1229929	chrIV-30	2415	+
-chrXV	836718	836881	chrXV-21	2414	+
-chrIV	417002	417165	chrIV-45	2408	+
-chrII	371045	371208	chrII-17	2404	+
-chrVII	1083737	1083900	chrVII-17	2403	+
-chrIV	272098	272261	chrIV-51	2401	+
-chrXI	577	740	chrXI-15	2399	+
-chrXIII	433763	433926	chrXIII-13	2398	+
-chrIX	212183	212346	chrIX-7	2391	+
-chrXV	1009838	1010001	chrXV-58	2390	+
-chrIII	50477	50640	chrIII-5	2382	+
-chrVII	1026869	1027032	chrVII-27	2376	+
-chrXIV	7198	7361	chrXIV-11	2373	+
-chrVII	677683	677846	chrVII-10	2373	+
-chrXV	606318	606481	chrXV-39	2371	+
-chrXIV	500616	500779	chrXIV-10	2369	+
-chrXII	809061	809224	chrXII-29	2367	+
-chrIX	113450	113613	chrIX-15	2365	+
-chrVI	184116	184279	chrVI-8	2358	+
-chrXI	665980	666143	chrXI-8	2358	+
-chrII	415583	415746	chrII-22	2341	+
-chrXIII	557147	557310	chrXIII-15	2340	+
-chrXII	839454	839617	chrXII-40	2337	+
-chrXVI	822215	822378	chrXVI-23	2335	+
-chrIV	1289065	1289228	chrIV-22	2335	+
-chrIII	24478	24641	chrIII-7	2335	+
-chrVIII	375230	375393	chrVIII-15	2335	+
-chrXV	882133	882296	chrXV-28	2328	+
-chrX	83136	83299	chrX-17	2327	+
-chrVII	547399	547562	chrVII-13	2325	+
-chrXIV	198197	198360	chrXIV-13	2324	+
-chrXI	518989	519152	chrXI-12	2321	+
-chrX	623241	623404	chrX-13	2319	+
-chrXV	380740	380903	chrXV-32	2317	+
-chrXIII	540223	540386	chrXIII-21	2317	+
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-chrXI	258659	258822	chrXI-18	2200	+
-chrXII	514905	515068	chrXII-32	2200	+
-chrVII	785665	785828	chrVII-12	2197	+
-chrX	173274	173437	chrX-11	2194	+
-chrXVI	794656	794819	chrXVI-17	2192	+
-chrXV	678990	679153	chrXV-37	2189	+
-chrV	435671	435834	chrV-24	2188	+
-chrXIV	405810	405973	chrXIV-22	2187	+
-chrIV	1201840	1202003	chrIV-27	2185	+
-chrXVI	425357	425520	chrXVI-24	2184	+
-chrX	6679	6842	chrX-22	2184	+
-chrXII	932403	932566	chrXII-42	2181	+
-chrXII	11849	12012	chrXII-38	2180	+
-chrVI	106386	106549	chrVI-9	2174	+
-chrX	651472	651635	chrX-16	2173	+
-chrXIV	783354	783517	chrXIV-17	2168	+
-chrXV	444436	444599	chrXV-22	2151	+
-chrIV	215841	216004	chrIV-34	2146	+
-chrIX	177688	177851	chrIX-8	2142	+
-chrIV	746372	746535	chrIV-39	2137	+
-chrV	265982	266145	chrV-21	2133	+
-chrII	625021	625184	chrII-26	2128	+
-chrIX	332738	332901	chrIX-13	2128	+
-chrXII	1064348	1064511	chrXII-35	2126	+
-chrVIII	10451	10614	chrVIII-16	2123	+
-chrX	525691	525854	chrX-19	2123	+
-chrVII	371059	371222	chrVII-16	2118	+
-chrXVI	700147	700310	chrXVI-38	2117	+
-chrXII	875270	875433	chrXII-41	2113	+
-chrXII	84234	84397	chrXII-51	2111	+
-chrXV	866749	866912	chrXV-30	2110	+
-chrIV	239749	239912	chrIV-31	2101	+
-chrXIII	388133	388296	chrXIII-19	2100	+
-chrXV	949429	949592	chrXV-42	2086	+
-chrXI	338887	339050	chrXI-22	2086	+
-chrVII	229870	230033	chrVII-39	2082	+
-chrVII	384745	384908	chrVII-24	2082	+
-chrIV	556658	556821	chrIV-61	2078	+
-chrXV	611	774	chrXV-27	2075	+
-chrVII	401453	401616	chrVII-28	2073	+
-chrXVI	502384	502547	chrXVI-20	2071	+
-chrXI	308812	308975	chrXI-24	2071	+
-chrXIV	602487	602650	chrXIV-19	2066	+
-chrXV	671083	671246	chrXV-38	2061	+
-chrIV	56745	56908	chrIV-42	2059	+
-chrVII	167536	167699	chrVII-29	2057	+
-chrXIII	306585	306748	chrXIII-26	2055	+
-chrXII	566445	566608	chrXII-36	2055	+
-chrXII	673960	674123	chrXII-46	2055	+
-chrIV	217335	217498	chrIV-35	2053	+
-chrXV	377886	378049	chrXV-41	2053	+
-chrXII	1012184	1012347	chrXII-44	2052	+
-chrIV	62166	62329	chrIV-56	2049	+
-chrII	165047	165210	chrII-28	2039	+
-chrX	294428	294591	chrX-20	2037	+
-chrIII	163570	163733	chrIII-8	2036	+
-chrIV	357195	357358	chrIV-32	2032	+
-chrVI	74759	74922	chrVI-12	2029	+
-chrVII	823545	823708	chrVII-18	2027	+
-chrIV	894081	894244	chrIV-47	2021	+
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-chrIII	225271	225434	chrIII-11	2017	+
-chrVII	76622	76785	chrVII-22	2016	+
-chrX	432318	432481	chrX-23	2015	+
-chrXIII	754323	754486	chrXIII-25	2015	+
-chrIV	1490344	1490507	chrIV-49	2009	+
-chrIV	1166474	1166637	chrIV-46	2006	+
-chrXII	586053	586216	chrXII-61	2004	+
-chrIV	307950	308113	chrIV-38	2001	+
-chrXII	440064	440227	chrXII-50	1990	+
-chrXV	762288	762451	chrXV-40	1987	+
-chrXVI	207783	207946	chrXVI-35	1986	+
-chrXI	513267	513430	chrXI-31	1981	+
-chrXV	479899	480062	chrXV-45	1979	+
-chrII	376049	376212	chrII-31	1979	+
-chrX	160164	160327	chrX-15	1978	+
-chrI	124522	124685	chrI-8	1975	+
-chrV	335678	335841	chrV-22	1975	+
-chrXVI	857013	857176	chrXVI-26	1974	+
-chrIV	461412	461575	chrIV-53	1970	+
-chrII	336959	337122	chrII-36	1969	+
-chrXVI	40467	40630	chrXVI-28	1967	+
-chrXV	487142	487305	chrXV-31	1957	+
-chrXVI	297144	297307	chrXVI-39	1955	+
-chrXII	658169	658332	chrXII-39	1951	+
-chrXII	837598	837761	chrXII-49	1951	+
-chrX	268490	268653	chrX-25	1946	+
-chrIV	600108	600271	chrIV-40	1944	+
-chrVII	884193	884356	chrVII-23	1933	+
-chrIX	139361	139524	chrIX-11	1927	+
-chrXIII	551544	551707	chrXIII-24	1927	+
-chrIV	1150677	1150840	chrIV-60	1923	+
-chrVII	528456	528619	chrVII-19	1916	+
-chrIV	755287	755450	chrIV-41	1908	+
-chrXVI	527054	527217	chrXVI-27	1907	+
-chrVIII	5230	5393	chrVIII-19	1906	+
-chrXII	504146	504309	chrXII-95	1906	+
-chrXIV	479281	479444	chrXIV-23	1898	+
-chrIV	286814	286977	chrIV-59	1898	+
-chrXIV	507363	507526	chrXIV-29	1895	+
-chrX	360861	361024	chrX-24	1894	+
-chrVIII	521922	522085	chrVIII-28	1891	+
-chrIV	507423	507586	chrIV-54	1890	+
-chrXIV	503056	503219	chrXIV-24	1886	+
-chrXVI	29876	30039	chrXVI-44	1880	+
-chrVII	74387	74550	chrVII-32	1876	+
-chrXVI	386613	386776	chrXVI-42	1874	+
-chrX	424272	424435	chrX-29	1866	+
-chrXV	1061256	1061419	chrXV-35	1865	+
-chrXV	27530	27693	chrXV-36	1863	+
-chrIV	909548	909711	chrIV-43	1863	+
-chrXII	784452	784615	chrXII-47	1860	+
-chrV	302442	302605	chrV-23	1856	+
-chrXV	161169	161332	chrXV-68	1856	+
-chrVII	974513	974676	chrVII-31	1855	+
-chrXV	186818	186981	chrXV-99	1855	+
-chrIX	292167	292330	chrIX-17	1854	+
-chrXIII	258901	259064	chrXIII-31	1854	+
-chrX	639130	639293	chrX-32	1853	+
-chrXIII	119259	119422	chrXIII-33	1849	+
-chrXIV	138090	138253	chrXIV-27	1849	+
-chrIV	1459518	1459681	chrIV-55	1839	+
-chrVII	423101	423264	chrVII-36	1839	+
-chrII	426944	427107	chrII-32	1839	+
-chrVIII	143671	143834	chrVIII-36	1837	+
-chrVII	609748	609911	chrVII-30	1835	+
-chrXV	436612	436775	chrXV-43	1832	+
-chrIX	249225	249388	chrIX-16	1828	+
-chrXVI	497794	497957	chrXVI-53	1827	+
-chrIV	130601	130764	chrIV-57	1825	+
-chrVIII	461398	461561	chrVIII-23	1824	+
-chrVI	210231	210394	chrVI-14	1822	+
-chrXI	355768	355931	chrXI-23	1819	+
-chrIX	21776	21939	chrIX-12	1818	+
-chrXIII	653370	653533	chrXIII-29	1812	+
-chrVII	733377	733540	chrVII-25	1811	+
-chrXV	472418	472581	chrXV-48	1810	+
-chrII	697509	697672	chrII-33	1801	+
-chrXV	58601	58764	chrXV-59	1801	+
-chrIV	432082	432245	chrIV-67	1797	+
-chrXV	1059013	1059176	chrXV-34	1795	+
-chrXII	390512	390675	chrXII-48	1794	+
-chrIV	1345336	1345499	chrIV-62	1788	+
-chrXV	252798	252961	chrXV-46	1781	+
-chrVII	141894	142057	chrVII-46	1778	+
-chrXV	446830	446993	chrXV-73	1778	+
-chrXII	416902	417065	chrXII-58	1776	+
-chrIX	316492	316655	chrIX-21	1775	+
-chrX	391488	391651	chrX-30	1774	+
-chrXII	819002	819165	chrXII-52	1773	+
-chrXV	304892	305055	chrXV-49	1771	+
-chrX	236624	236787	chrX-36	1769	+
-chrXV	638862	639025	chrXV-44	1768	+
-chrXVI	812815	812978	chrXVI-33	1768	+
-chrIV	1056200	1056363	chrIV-63	1761	+
-chrXII	323058	323221	chrXII-56	1759	+
-chrXVI	404247	404410	chrXVI-37	1759	+
-chrXI	93515	93678	chrXI-21	1756	+
-chrXIII	245789	245952	chrXIII-28	1751	+
-chrXV	619363	619526	chrXV-56	1745	+
-chrXIV	444460	444623	chrXIV-26	1744	+
-chrIV	1359598	1359761	chrIV-65	1743	+
-chrVIII	115199	115362	chrVIII-20	1742	+
-chrXVI	666059	666222	chrXVI-58	1738	+
-chrIV	769217	769380	chrIV-66	1736	+
-chrVII	598987	599150	chrVII-37	1735	+
-chrII	504535	504698	chrII-34	1733	+
-chrXV	160782	160945	chrXV-47	1733	+
-chrIII	236677	236840	chrIII-12	1729	+
-chrXII	932049	932212	chrXII-57	1727	+
-chrXVI	172854	173017	chrXVI-45	1725	+
-chrV	409442	409605	chrV-28	1724	+
-chrXIII	159105	159268	chrXIII-37	1724	+
-chrX	137042	137205	chrX-27	1722	+
-chrXVI	482187	482350	chrXVI-32	1721	+
-chrXVI	463997	464160	chrXVI-30	1720	+
-chrVII	1058816	1058979	chrVII-41	1720	+
-chrXVI	108357	108520	chrXVI-41	1717	+
-chrXV	273874	274037	chrXV-51	1713	+
-chrIV	76984	77147	chrIV-71	1709	+
-chrXIII	852259	852422	chrXIII-30	1707	+
-chrII	561101	561264	chrII-54	1707	+
-chrVIII	462131	462294	chrVIII-26	1705	+
-chrXV	69112	69275	chrXV-50	1704	+
-chrX	90279	90442	chrX-26	1704	+
-chrIX	267984	268147	chrIX-19	1701	+
-chrV	298441	298604	chrV-25	1701	+
-chrVIII	498798	498961	chrVIII-24	1700	+
-chrI	29885	30048	chrI-9	1700	+
-chrVII	726695	726858	chrVII-33	1693	+
-chrXII	665205	665368	chrXII-53	1692	+
-chrIV	652470	652633	chrIV-85	1692	+
-chrXII	721524	721687	chrXII-62	1689	+
-chrXIV	281692	281855	chrXIV-21	1688	+
-chrXIII	122	285	chrXIII-35	1687	+
-chrII	258152	258315	chrII-39	1685	+
-chrXIII	347104	347267	chrXIII-32	1685	+
-chrXVI	752028	752191	chrXVI-87	1684	+
-chrXII	677746	677909	chrXII-59	1680	+
-chrIX	166129	166292	chrIX-20	1679	+
-chrXV	742359	742522	chrXV-53	1678	+
-chrX	573026	573189	chrX-28	1678	+
-chrX	154779	154942	chrX-46	1676	+
-chrII	378787	378950	chrII-37	1676	+
-chrV	386900	387063	chrV-32	1676	+
-chrII	770581	770744	chrII-38	1670	+
-chrXIII	472874	473037	chrXIII-34	1669	+
-chrII	444761	444924	chrII-57	1668	+
-chrXII	237875	238038	chrXII-72	1668	+
-chrII	760955	761118	chrII-42	1663	+
-chrXV	464456	464619	chrXV-61	1663	+
-chrVIII	116026	116189	chrVIII-30	1663	+
-chrXV	218800	218963	chrXV-52	1656	+
-chrXIV	739373	739536	chrXIV-25	1654	+
-chrIV	998543	998706	chrIV-70	1649	+
-chrII	490578	490741	chrII-44	1648	+
-chrIV	593490	593653	chrIV-77	1646	+
-chrVII	319700	319863	chrVII-60	1640	+
-chrIX	197580	197743	chrIX-22	1639	+
-chrIV	491206	491369	chrIV-68	1637	+
-chrXII	65489	65652	chrXII-66	1636	+
-chrXV	901353	901516	chrXV-54	1633	+
-chrXII	522337	522500	chrXII-60	1631	+
-chrII	586266	586429	chrII-40	1630	+
-chrXIII	401436	401599	chrXIII-40	1627	+
-chrXV	737965	738128	chrXV-57	1623	+
-chrII	360414	360577	chrII-35	1621	+
-chrXVI	280158	280321	chrXVI-40	1619	+
-chrXIII	915207	915370	chrXIII-41	1617	+
-chrXV	860493	860656	chrXV-62	1616	+
-chrXII	212393	212556	chrXII-55	1615	+
-chrVII	56188	56351	chrVII-52	1614	+
-chrXV	1043302	1043465	chrXV-60	1613	+
-chrVII	20360	20523	chrVII-35	1612	+
-chrV	396414	396577	chrV-26	1611	+
-chrVI	148773	148936	chrVI-15	1609	+
-chrXIII	287501	287664	chrXIII-38	1607	+
-chrX	524589	524752	chrX-33	1601	+
-chrVIII	280383	280546	chrVIII-25	1598	+
-chrXVI	581282	581445	chrXVI-52	1598	+
-chrV	159276	159439	chrV-35	1597	+
-chrXI	164604	164767	chrXI-27	1596	+
-chrVIII	302142	302305	chrVIII-32	1595	+
-chrIV	1224662	1224825	chrIV-73	1591	+
-chrVIII	81782	81945	chrVIII-31	1585	+
-chrXVI	309804	309967	chrXVI-51	1585	+
-chrX	415870	416033	chrX-34	1585	+
-chrVIII	245819	245982	chrVIII-27	1583	+
-chrXIII	26554	26717	chrXIII-36	1579	+
-chrV	522831	522994	chrV-29	1578	+
-chrVII	871616	871779	chrVII-34	1572	+
-chrXIII	353227	353390	chrXIII-44	1567	+
-chrII	101240	101403	chrII-52	1564	+
-chrXIV	663927	664090	chrXIV-30	1564	+
-chrVII	609224	609387	chrVII-40	1559	+
-chrXIV	619801	619964	chrXIV-31	1559	+
-chrX	150592	150755	chrX-49	1558	+
-chrXII	407082	407245	chrXII-73	1558	+
-chrVII	84376	84539	chrVII-56	1558	+
-chrVII	999274	999437	chrVII-47	1553	+
-chrXV	21469	21632	chrXV-64	1552	+
-chrX	195399	195562	chrX-31	1551	+
-chrV	270347	270510	chrV-27	1551	+
-chrVIII	111	274	chrVIII-29	1550	+
-chrI	181076	181239	chrI-12	1550	+
-chrVIII	62673	62836	chrVIII-38	1543	+
-chrXIV	412454	412617	chrXIV-33	1542	+
-chrXIV	91585	91748	chrXIV-34	1536	+
-chrXIV	662050	662213	chrXIV-32	1536	+
-chrXII	234554	234717	chrXII-64	1535	+
-chrXII	510526	510689	chrXII-63	1535	+
-chrXII	645761	645924	chrXII-67	1532	+
-chrXVI	106910	107073	chrXVI-49	1532	+
-chrIV	212821	212984	chrIV-74	1527	+
-chrVIII	209345	209508	chrVIII-42	1527	+
-chrIV	539007	539170	chrIV-69	1527	+
-chrXVI	132352	132515	chrXVI-46	1523	+
-chrXVI	653858	654021	chrXVI-47	1519	+
-chrI	229870	230033	chrI-10	1519	+
-chrXIII	798048	798211	chrXIII-43	1519	+
-chrXII	202700	202863	chrXII-70	1515	+
-chrV	242832	242995	chrV-30	1514	+
-chrXVI	731937	732100	chrXVI-43	1505	+
-chrXIII	777361	777524	chrXIII-39	1504	+
-chrXIV	495134	495297	chrXIV-37	1503	+
-chrXI	581169	581332	chrXI-34	1503	+
-chrIV	512368	512531	chrIV-72	1502	+
-chrIV	321897	322060	chrIV-78	1501	+
-chrX	337834	337997	chrX-35	1500	+
-chrXIV	568111	568274	chrXIV-35	1497	+
-chrXV	733641	733804	chrXV-70	1496	+
-chrIV	506138	506301	chrIV-75	1493	+
-chrXV	631888	632051	chrXV-71	1493	+
-chrXI	417079	417242	chrXI-29	1490	+
-chrIII	14615	14778	chrIII-16	1489	+
-chrIV	1277380	1277543	chrIV-98	1481	+
-chrXIII	872722	872885	chrXIII-46	1481	+
-chrVII	788346	788509	chrVII-43	1479	+
-chrIV	992828	992991	chrIV-79	1478	+
-chrVII	548171	548334	chrVII-48	1477	+
-chrIX	99639	99802	chrIX-23	1476	+
-chrXI	260623	260786	chrXI-33	1475	+
-chrVII	149101	149264	chrVII-44	1474	+
-chrX	448935	449098	chrX-50	1473	+
-chrII	153822	153985	chrII-43	1471	+
-chrXV	417926	418089	chrXV-66	1468	+
-chrVII	483081	483244	chrVII-42	1468	+
-chrXIII	664367	664530	chrXIII-42	1467	+
-chrII	618641	618804	chrII-68	1467	+
-chrXIV	174606	174769	chrXIV-36	1466	+
-chrII	645180	645343	chrII-56	1464	+
-chrV	306011	306174	chrV-33	1463	+
-chrIII	246718	246881	chrIII-19	1463	+
-chrV	422597	422760	chrV-38	1461	+
-chrX	455802	455965	chrX-38	1459	+
-chrXVI	378560	378723	chrXVI-61	1459	+
-chrIV	234462	234625	chrIV-86	1457	+
-chrVII	848341	848504	chrVII-58	1455	+
-chrV	194722	194885	chrV-31	1455	+
-chrXI	21506	21669	chrXI-32	1455	+
-chrVII	557707	557870	chrVII-45	1454	+
-chrIX	232647	232810	chrIX-25	1452	+
-chrXII	130884	131047	chrXII-75	1451	+
-chrX	609034	609197	chrX-41	1450	+
-chrIII	78252	78415	chrIII-14	1449	+
-chrXV	304328	304491	chrXV-67	1445	+
-chrXII	289718	289881	chrXII-69	1444	+
-chrXIV	63078	63241	chrXIV-38	1444	+
-chrXIV	651898	652061	chrXIV-44	1443	+
-chrII	681968	682131	chrII-47	1440	+
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-chrXV	727192	727355	chrXV-106	1129	+
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-chrXI	24931	25094	chrXI-47	1105	+
-chrVII	576624	576787	chrVII-84	1105	+
-chrXVI	901649	901812	chrXVI-89	1103	+
-chrXV	673797	673960	chrXV-116	1103	+
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-chrIV	198549	198712	chrIV-143	1101	+
-chrXV	391575	391738	chrXV-104	1101	+
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-chrV	461883	462046	chrV-55	1099	+
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-chrV	400814	400977	chrV-54	1088	+
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-chrXV	683701	683864	chrXV-115	1085	+
-chrIX	78	241	chrIX-36	1083	+
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-chrXIV	544942	545105	chrXIV-59	1083	+
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-chrXIV	251818	251981	chrXIV-61	1075	+
-chrXV	592673	592836	chrXV-117	1075	+
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-chrXI	245642	245805	chrXI-52	1073	+
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-chrXVI	870138	870301	chrXVI-92	1073	+
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-chrXV	930291	930454	chrXV-90	1071	+
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-chrX	228504	228667	chrX-62	1062	+
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-chrXV	830768	830931	chrXV-107	1057	+
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-chrXI	645389	645552	chrXI-55	1042	+
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-chrXI	288553	288716	chrXI-53	1039	+
-chrXV	117968	118131	chrXV-111	1039	+
-chrXIII	225633	225796	chrXIII-90	1038	+
-chrV	386346	386509	chrV-56	1038	+
-chrV	258109	258272	chrV-64	1038	+
-chrXIII	540671	540834	chrXIII-75	1038	+
-chrVIII	505731	505894	chrVIII-51	1037	+
-chrXIII	751416	751579	chrXIII-78	1036	+
-chrXII	871446	871609	chrXII-119	1034	+
-chrV	106987	107150	chrV-92	1032	+
-chrIV	426939	427102	chrIV-136	1029	+
-chrXVI	76370	76533	chrXVI-94	1029	+
-chrXIII	243888	244051	chrXIII-83	1028	+
-chrXII	47520	47683	chrXII-107	1027	+
-chrXIV	317799	317962	chrXIV-65	1027	+
-chrXV	925294	925457	chrXV-109	1027	+
-chrIV	699617	699780	chrIV-137	1026	+
-chrIV	1269749	1269912	chrIV-184	1026	+
-chrXIII	605799	605962	chrXIII-101	1023	+
-chrXI	554640	554803	chrXI-59	1022	+
-chrXVI	866533	866696	chrXVI-110	1021	+
-chrVIII	201424	201587	chrVIII-56	1021	+
-chrXII	759157	759320	chrXII-110	1020	+
-chrXV	781562	781725	chrXV-124	1020	+
-chrXVI	150362	150525	chrXVI-93	1019	+
-chrXIV	576213	576376	chrXIV-64	1019	+
-chrXII	473533	473696	chrXII-130	1019	+
-chrXI	559416	559579	chrXI-61	1018	+
-chrXV	316425	316588	chrXV-122	1018	+
-chrIV	575902	576065	chrIV-161	1017	+
-chrIV	1005334	1005497	chrIV-141	1017	+
-chrXII	581782	581945	chrXII-123	1014	+
-chrVIII	17482	17645	chrVIII-59	1013	+
-chrVII	661802	661965	chrVII-94	1010	+
-chrX	134	297	chrX-64	1010	+
-chrV	354993	355156	chrV-68	1008	+
-chrXIII	504903	505066	chrXIII-79	1008	+
-chrXV	649046	649209	chrXV-127	1007	+
-chrIV	645074	645237	chrIV-148	1005	+
-chrV	382349	382512	chrV-48	1005	+
-chrXIV	269999	270162	chrXIV-68	1004	+
-chrXVI	576162	576325	chrXVI-97	1002	+
-chrIV	106959	107122	chrIV-153	1002	+
-chrIV	323703	323866	chrIV-152	1001	+
-chrV	131499	131662	chrV-81	1001	+
-chrXII	380664	380827	chrXII-118	1001	+
-chrXVI	246641	246804	chrXVI-96	1000	+
-chrX	434845	435008	chrX-63	999	+
-chrXIII	424679	424842	chrXIII-74	999	+
-chrIV	520939	521102	chrIV-150	999	+
-chrX	189472	189635	chrX-66	999	+
-chrIV	442708	442871	chrIV-147	997	+
-chrXV	898502	898665	chrXV-114	992	+
-chrIV	626136	626299	chrIV-157	991	+
-chrXI	82734	82897	chrXI-68	990	+
-chrXIV	116671	116834	chrXIV-67	990	+
-chrX	559206	559369	chrX-69	986	+
-chrII	221478	221641	chrII-78	985	+
-chrVIII	74613	74776	chrVIII-58	984	+
-chrVII	667853	668016	chrVII-117	984	+
-chrVII	987365	987528	chrVII-93	984	+
-chrXIII	510955	511118	chrXIII-85	982	+
-chrIV	765353	765516	chrIV-138	982	+
-chrXIII	223996	224159	chrXIII-82	980	+
-chrXIV	107314	107477	chrXIV-69	979	+
-chrII	408635	408798	chrII-79	978	+
-chrI	84377	84540	chrI-17	977	+
-chrVII	914942	915105	chrVII-102	975	+
-chrV	16073	16236	chrV-70	975	+
-chrI	20907	21070	chrI-15	974	+
-chrXI	362223	362386	chrXI-66	973	+
-chrXVI	370739	370902	chrXVI-107	971	+
-chrXVI	100257	100420	chrXVI-104	970	+
-chrVII	754073	754236	chrVII-104	970	+
-chrIV	1402787	1402950	chrIV-164	965	+
-chrIV	121886	122049	chrIV-154	965	+
-chrVII	739672	739835	chrVII-106	964	+
-chrI	76211	76374	chrI-22	963	+
-chrXIII	362314	362477	chrXIII-86	963	+
-chrII	281029	281192	chrII-81	962	+
-chrXII	395637	395800	chrXII-114	962	+
-chrXV	522654	522817	chrXV-118	961	+
-chrIII	103480	103643	chrIII-26	960	+
-chrIV	521563	521726	chrIV-171	959	+
-chrXII	728444	728607	chrXII-115	958	+
-chrVII	197253	197416	chrVII-100	958	+
-chrV	292734	292897	chrV-71	957	+
-chrVII	581736	581899	chrVII-103	956	+
-chrVI	269864	270027	chrVI-24	956	+
-chrIV	721696	721859	chrIV-158	954	+
-chrXVI	188731	188894	chrXVI-95	954	+
-chrVII	67301	67464	chrVII-124	953	+
-chrXV	292203	292366	chrXV-121	953	+
-chrXIII	896813	896976	chrXIII-91	952	+
-chrVI	210607	210770	chrVI-25	952	+
-chrXIII	625621	625784	chrXIII-88	951	+
-chrXI	205400	205563	chrXI-63	950	+
-chrXIV	695305	695468	chrXIV-73	948	+
-chrVII	516410	516573	chrVII-109	947	+
-chrVIII	281186	281349	chrVIII-63	946	+
-chrVII	1069319	1069482	chrVII-107	942	+
-chrV	404526	404689	chrV-69	942	+
-chrXI	614862	615025	chrXI-62	939	+
-chrVII	1050229	1050392	chrVII-122	939	+
-chrXVI	406319	406482	chrXVI-105	937	+
-chrXVI	381534	381697	chrXVI-101	936	+
-chrII	798939	799102	chrII-85	935	+
-chrVIII	242261	242424	chrVIII-62	934	+
-chrXI	143314	143477	chrXI-67	931	+
-chrIX	394860	395023	chrIX-52	929	+
-chrII	533476	533639	chrII-84	927	+
-chrXI	178218	178381	chrXI-64	925	+
-chrVI	162215	162378	chrVI-30	925	+
-chrV	503865	504028	chrV-73	921	+
-chrVIII	491622	491785	chrVIII-60	919	+
-chrVII	640516	640679	chrVII-120	918	+
-chrIV	892494	892657	chrIV-169	918	+
-chrXIII	413530	413693	chrXIII-106	917	+
-chrIX	312566	312729	chrIX-45	916	+
-chrXII	1043481	1043644	chrXII-113	915	+
-chrIII	178319	178482	chrIII-32	911	+
-chrVII	1022007	1022170	chrVII-90	910	+
-chrV	33754	33917	chrV-80	906	+
-chrIV	147899	148062	chrIV-165	906	+
-chrIV	1172073	1172236	chrIV-175	905	+
-chrXIII	500845	501008	chrXIII-100	901	+
-chrIV	1445605	1445768	chrIV-176	901	+
-chrXI	635254	635417	chrXI-58	901	+
-chrV	237202	237365	chrV-74	901	+
-chrX	445148	445311	chrX-73	901	+
-chrVII	1090737	1090900	chrVII-108	900	+
-chrXIV	301835	301998	chrXIV-72	899	+
-chrIV	190675	190838	chrIV-179	899	+
-chrIV	304951	305114	chrIV-163	897	+
-chrVII	656566	656729	chrVII-105	896	+
-chrVIII	488325	488488	chrVIII-67	896	+
-chrV	207339	207502	chrV-76	896	+
-chrXIII	905974	906137	chrXIII-102	895	+
-chrXV	315534	315697	chrXV-125	892	+
-chrV	576671	576834	chrV-77	892	+
-chrXIII	195928	196091	chrXIII-103	892	+
-chrIX	222649	222812	chrIX-48	891	+
-chrXVI	627047	627210	chrXVI-112	891	+
-chrV	99568	99731	chrV-75	890	+
-chrXI	284732	284895	chrXI-73	889	+
-chrXII	611822	611985	chrXII-128	889	+
-chrXVI	271062	271225	chrXVI-109	889	+
-chrXIV	258218	258381	chrXIV-75	888	+
-chrIV	1049543	1049706	chrIV-181	886	+
-chrXIII	56207	56370	chrXIII-104	885	+
-chrXV	299235	299398	chrXV-131	885	+
-chrXV	201910	202073	chrXV-135	884	+
-chrVII	770336	770499	chrVII-129	882	+
-chrV	53437	53600	chrV-79	881	+
-chrXII	576475	576638	chrXII-136	880	+
-chrXV	618497	618660	chrXV-132	880	+
-chrXIII	545733	545896	chrXIII-111	880	+
-chrII	786964	787127	chrII-89	878	+
-chrXV	94555	94718	chrXV-129	878	+
-chrXIII	236230	236393	chrXIII-95	878	+
-chrVII	412218	412381	chrVII-130	876	+
-chrXVI	840755	840918	chrXVI-113	876	+
-chrXII	828010	828173	chrXII-137	875	+
-chrIX	268522	268685	chrIX-44	874	+
-chrXII	39562	39725	chrXII-135	873	+
-chrVII	17918	18081	chrVII-118	871	+
-chrXV	587998	588161	chrXV-134	870	+
-chrVIII	466973	467136	chrVIII-70	869	+
-chrXIII	46572	46735	chrXIII-108	869	+
-chrXI	38837	39000	chrXI-71	868	+
-chrXV	481884	482047	chrXV-138	868	+
-chrII	356150	356313	chrII-92	863	+
-chrIII	65698	65861	chrIII-37	861	+
-chrVII	650926	651089	chrVII-116	860	+
-chrVII	750235	750398	chrVII-119	859	+
-chrXII	1011335	1011498	chrXII-139	855	+
-chrVII	779904	780067	chrVII-128	854	+
-chrX	280761	280924	chrX-75	850	+
-chrII	642683	642846	chrII-94	843	+
-chrII	63398	63561	chrII-95	843	+
-chrXVI	128207	128370	chrXVI-117	843	+
-chrXVI	801962	802125	chrXVI-116	843	+
-chrXII	553872	554035	chrXII-140	841	+
-chrVII	766041	766204	chrVII-131	841	+
-chrXVI	135543	135706	chrXVI-118	841	+
-chrXIV	372255	372418	chrXIV-89	840	+
-chrVII	671981	672144	chrVII-136	839	+
-chrX	414866	415029	chrX-77	839	+
-chrIV	1276311	1276474	chrIV-186	838	+
-chrI	48312	48475	chrI-18	837	+
-chrXIV	310246	310409	chrXIV-82	836	+
-chrXIII	832055	832218	chrXIII-112	832	+
-chrVII	1065139	1065302	chrVII-138	829	+
-chrIII	299178	299341	chrIII-33	826	+
-chrI	211027	211190	chrI-19	825	+
-chrXIV	668178	668341	chrXIV-94	823	+
-chrIV	955368	955531	chrIV-188	823	+
-chrXI	630530	630693	chrXI-81	822	+
-chrXI	127154	127317	chrXI-83	821	+
-chrXII	828419	828582	chrXII-141	821	+
-chrVII	584162	584325	chrVII-134	819	+
-chrIX	84834	84997	chrIX-50	816	+
-chrVII	31616	31779	chrVII-140	815	+
-chrXIV	233900	234063	chrXIV-83	815	+
-chrXVI	565075	565238	chrXVI-134	813	+
-chrIV	1386508	1386671	chrIV-193	812	+
-chrIV	386911	387074	chrIV-182	812	+
-chrXI	173877	174040	chrXI-75	811	+
-chrIV	1450943	1451106	chrIV-194	810	+
-chrII	269945	270108	chrII-90	808	+
-chrX	75611	75774	chrX-78	807	+
-chrVII	774422	774585	chrVII-143	807	+
-chrIII	216350	216513	chrIII-31	803	+
-chrIV	657558	657721	chrIV-207	802	+
-chrXIII	251473	251636	chrXIII-99	801	+
-chrXV	424396	424559	chrXV-145	800	+
-chrV	162417	162580	chrV-82	798	+
-chrIV	617266	617429	chrIV-199	794	+
-chrXI	590018	590181	chrXI-89	788	+
-chrVII	620010	620173	chrVII-147	788	+
-chrVIII	229015	229178	chrVIII-71	786	+
-chrVII	228499	228662	chrVII-144	786	+
-chrXI	231584	231747	chrXI-87	785	+
-chrXI	153012	153175	chrXI-93	783	+
-chrXV	761410	761573	chrXV-142	782	+
-chrXI	75511	75674	chrXI-80	781	+
-chrXII	534553	534716	chrXII-157	781	+
-chrVIII	67559	67722	chrVIII-83	778	+
-chrII	602287	602450	chrII-100	777	+
-chrXVI	67058	67221	chrXVI-123	776	+
-chrVIII	423484	423647	chrVIII-81	773	+
-chrIV	1125222	1125385	chrIV-197	773	+
-chrVI	233711	233874	chrVI-33	772	+
-chrV	545313	545476	chrV-91	772	+
-chrII	28812	28975	chrII-99	770	+
-chrI	61185	61348	chrI-21	770	+
-chrXIII	667218	667381	chrXIII-121	760	+
-chrXIII	253178	253341	chrXIII-117	755	+
-chrV	39762	39925	chrV-86	754	+
-chrVII	968809	968972	chrVII-150	754	+
-chrIV	1236232	1236395	chrIV-206	748	+
-chrXIII	627934	628097	chrXIII-124	741	+
-chrIV	814319	814482	chrIV-213	740	+
-chrXI	247867	248030	chrXI-98	740	+
-chrIV	770052	770215	chrIV-214	739	+
-chrVII	772057	772220	chrVII-154	739	+
-chrXV	797005	797168	chrXV-156	739	+
-chrXIII	590026	590189	chrXIII-122	735	+
-chrIV	447726	447889	chrIV-217	734	+
-chrXIV	707491	707654	chrXIV-93	734	+
-chrX	73542	73705	chrX-86	733	+
-chrVII	836811	836974	chrVII-155	729	+
-chrX	68957	69120	chrX-83	725	+
-chrXIII	178259	178422	chrXIII-130	724	+
-chrIX	131917	132080	chrIX-62	717	+
-chrXIII	127480	127643	chrXIII-127	709	+
-chrXIV	694824	694987	chrXIV-113	706	+
-chrIV	1020357	1020520	chrIV-208	702	+
-chrIV	946234	946397	chrIV-223	698	+
-chrXVI	730378	730541	chrXVI-141	697	+
-chrXVI	95311	95474	chrXVI-125	695	+
-chrX	58990	59153	chrX-94	694	+
-chrVII	206431	206594	chrVII-149	693	+
-chrIX	102424	102587	chrIX-65	690	+
-chrVI	138554	138717	chrVI-36	680	+
-chrXVI	947834	947997	chrXVI-144	672	+
-chrIV	621699	621862	chrIV-239	668	+
-chrXIII	851709	851872	chrXIII-134	666	+
-chrXII	730547	730710	chrXII-182	658	+
-chrXIII	158381	158544	chrXIII-129	656	+
-chrIV	619892	620055	chrIV-242	652	+
-chrXVI	76	239	chrXVI-156	650	+
-chrVI	44583	44746	chrVI-35	630	+
-chrXIV	51738	51901	chrXIV-120	624	+
-chrXIV	653109	653272	chrXIV-119	622	+
-chrV	311491	311654	chrV-104	620	+
-chrXII	341117	341280	chrXII-194	611	+
-chrIV	1090164	1090327	chrIV-264	609	+
-chrIII	178823	178986	chrIII-49	594	+
-chrI	198553	198716	chrI-30	593	+
-chrIV	1183638	1183801	chrIV-299	531	+
-chrIV	265140	265303	chrIV-305	514	+
-chrX	578685	578848	chrX-138	468	+
-chrIII	90844	91007	chrIII-109	182	+

scripts/data/reprocessed_mahendrawada_results/peaks/ABF1xstandard/C/ABF1xstandard_C_peaks_summits.txt

@@ -1,1279 +0,0 @@
-chrXV	1084758	1084759	chrXV-7	0	+
-chrXII	5571	5572	chrXII-17	0	+
-chrI	71058	71059	chrI-1	0	+
-chrV	6320	6321	chrV-13	0	+
-chrVII	905668	905669	chrVII-2	0	+
-chrII	452285	452286	chrII-9	0	+
-chrXI	99863	99864	chrXI-1	0	+
-chrVIII	122398	122399	chrVIII-1	0	+
-chrII	5728	5729	chrII-7	0	+
-chrVIII	557107	557108	chrVIII-12	0	+
-chrVII	428238	428239	chrVII-4	0	+
-chrVI	4562	4563	chrVI-5	0	+
-chrXV	511458	511459	chrXV-3	0	+
-chrV	123314	123315	chrV-1	0	+
-chrXII	704510	704511	chrXII-16	0	+
-chrIV	867783	867784	chrIV-3	0	+
-chrXII	1071559	1071560	chrXII-15	0	+
-chrXV	988414	988415	chrXV-1	0	+
-chrV	192111	192112	chrV-10	0	+
-chrXI	80822	80823	chrXI-14	0	+
-chrIV	1429267	1429268	chrIV-1	0	+
-chrIV	1267118	1267119	chrIV-4	0	+
-chrVII	1084543	1084544	chrVII-5	0	+
-chrVII	271628	271629	chrVII-1	0	+
-chrIX	254413	254414	chrIX-1	0	+
-chrXII	11074	11075	chrXII-24	0	+
-chrIII	137401	137402	chrIII-1	0	+
-chrXIV	355579	355580	chrXIV-6	0	+
-chrII	136127	136128	chrII-1	0	+
-chrIV	1525616	1525617	chrIV-24	0	+
-chrXIV	57895	57896	chrXIV-4	0	+
-chrXVI	257158	257159	chrXVI-5	0	+
-chrXII	424137	424138	chrXII-20	0	+
-chrVII	23531	23532	chrVII-3	0	+
-chrXII	253358	253359	chrXII-22	0	+
-chrII	159916	159917	chrII-21	0	+
-chrXV	234040	234041	chrXV-8	0	+
-chrXVI	594163	594164	chrXVI-8	0	+
-chrXVI	339570	339571	chrXVI-4	0	+
-chrIII	61407	61408	chrIII-2	0	+
-chrIV	330750	330751	chrIV-6	0	+
-chrIX	96659	96660	chrIX-4	0	+
-chrIV	930656	930657	chrIV-5	0	+
-chrXVI	215026	215027	chrXVI-1	0	+
-chrX	123401	123402	chrX-3	0	+
-chrIV	1011629	1011630	chrIV-9	0	+
-chrXV	83250	83251	chrXV-4	0	+
-chrVI	95268	95269	chrVI-1	0	+
-chrXV	978768	978769	chrXV-5	0	+
-chrVIII	50799	50800	chrVIII-10	0	+
-chrXIV	350037	350038	chrXIV-1	0	+
-chrVI	90613	90614	chrVI-2	0	+
-chrXIV	217489	217490	chrXIV-5	0	+
-chrXV	909065	909066	chrXV-2	0	+
-chrVIII	422697	422698	chrVIII-7	0	+
-chrV	281035	281036	chrV-3	0	+
-chrXI	226188	226189	chrXI-4	0	+
-chrVIII	450920	450921	chrVIII-2	0	+
-chrXII	636455	636456	chrXII-21	0	+
-chrXIV	6499	6500	chrXIV-12	0	+
-chrV	85440	85441	chrV-9	0	+
-chrXIV	441037	441038	chrXIV-3	0	+
-chrXI	327877	327878	chrXI-3	0	+
-chrII	477386	477387	chrII-3	0	+
-chrXIV	283865	283866	chrXIV-7	0	+
-chrXVI	645179	645180	chrXVI-2	0	+
-chrXIII	104418	104419	chrXIII-3	0	+
-chrV	117860	117861	chrV-2	0	+
-chrXIII	675298	675299	chrXIII-2	0	+
-chrII	466437	466438	chrII-23	0	+
-chrVI	103433	103434	chrVI-4	0	+
-chrVIII	267253	267254	chrVIII-3	0	+
-chrXI	38459	38460	chrXI-17	0	+
-chrIV	551120	551121	chrIV-2	0	+
-chrIX	384351	384352	chrIX-2	0	+
-chrI	141961	141962	chrI-3	0	+
-chrVIII	98420	98421	chrVIII-6	0	+
-chrXV	968210	968211	chrXV-11	0	+
-chrXI	68942	68943	chrXI-19	0	+
-chrXVI	431774	431775	chrXVI-3	0	+
-chrV	225585	225586	chrV-6	0	+
-chrVI	225031	225032	chrVI-3	0	+
-chrV	491234	491235	chrV-8	0	+
-chrXI	382243	382244	chrXI-6	0	+
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-chrX	75693	75694	chrX-78	0	+
-chrVII	774504	774505	chrVII-143	0	+
-chrIII	216432	216433	chrIII-31	0	+
-chrIV	657640	657641	chrIV-207	0	+
-chrXIII	251555	251556	chrXIII-99	0	+
-chrXV	424478	424479	chrXV-145	0	+
-chrV	162499	162500	chrV-82	0	+
-chrIV	617348	617349	chrIV-199	0	+
-chrXI	590100	590101	chrXI-89	0	+
-chrVII	620092	620093	chrVII-147	0	+
-chrVIII	229097	229098	chrVIII-71	0	+
-chrVII	228581	228582	chrVII-144	0	+
-chrXI	231666	231667	chrXI-87	0	+
-chrXI	153094	153095	chrXI-93	0	+
-chrXV	761492	761493	chrXV-142	0	+
-chrXI	75593	75594	chrXI-80	0	+
-chrXII	534635	534636	chrXII-157	0	+
-chrVIII	67641	67642	chrVIII-83	0	+
-chrII	602369	602370	chrII-100	0	+
-chrXVI	67140	67141	chrXVI-123	0	+
-chrVIII	423566	423567	chrVIII-81	0	+
-chrIV	1125304	1125305	chrIV-197	0	+
-chrVI	233793	233794	chrVI-33	0	+
-chrV	545395	545396	chrV-91	0	+
-chrII	28894	28895	chrII-99	0	+
-chrI	61267	61268	chrI-21	0	+
-chrXIII	667300	667301	chrXIII-121	0	+
-chrXIII	253260	253261	chrXIII-117	0	+
-chrV	39844	39845	chrV-86	0	+
-chrVII	968891	968892	chrVII-150	0	+
-chrIV	1236314	1236315	chrIV-206	0	+
-chrXIII	628016	628017	chrXIII-124	0	+
-chrIV	814401	814402	chrIV-213	0	+
-chrXI	247949	247950	chrXI-98	0	+
-chrIV	770134	770135	chrIV-214	0	+
-chrVII	772139	772140	chrVII-154	0	+
-chrXV	797087	797088	chrXV-156	0	+
-chrXIII	590108	590109	chrXIII-122	0	+
-chrIV	447808	447809	chrIV-217	0	+
-chrXIV	707573	707574	chrXIV-93	0	+
-chrX	73624	73625	chrX-86	0	+
-chrVII	836893	836894	chrVII-155	0	+
-chrX	69039	69040	chrX-83	0	+
-chrXIII	178341	178342	chrXIII-130	0	+
-chrIX	131999	132000	chrIX-62	0	+
-chrXIII	127562	127563	chrXIII-127	0	+
-chrXIV	694906	694907	chrXIV-113	0	+
-chrIV	1020439	1020440	chrIV-208	0	+
-chrIV	946316	946317	chrIV-223	0	+
-chrXVI	730460	730461	chrXVI-141	0	+
-chrXVI	95393	95394	chrXVI-125	0	+
-chrX	59072	59073	chrX-94	0	+
-chrVII	206513	206514	chrVII-149	0	+
-chrIX	102506	102507	chrIX-65	0	+
-chrVI	138636	138637	chrVI-36	0	+
-chrXVI	947916	947917	chrXVI-144	0	+
-chrIV	621781	621782	chrIV-239	0	+
-chrXIII	851791	851792	chrXIII-134	0	+
-chrXII	730629	730630	chrXII-182	0	+
-chrXIII	158463	158464	chrXIII-129	0	+
-chrIV	619974	619975	chrIV-242	0	+
-chrXVI	158	159	chrXVI-156	0	+
-chrVI	44665	44666	chrVI-35	0	+
-chrXIV	51820	51821	chrXIV-120	0	+
-chrXIV	653191	653192	chrXIV-119	0	+
-chrV	311573	311574	chrV-104	0	+
-chrXII	341199	341200	chrXII-194	0	+
-chrIV	1090246	1090247	chrIV-264	0	+
-chrIII	178905	178906	chrIII-49	0	+
-chrI	198635	198636	chrI-30	0	+
-chrIV	1183720	1183721	chrIV-299	0	+
-chrIV	265222	265223	chrIV-305	0	+
-chrX	578767	578768	chrX-138	0	+
-chrIII	90926	90927	chrIII-109	0	+

scripts/data/reprocessed_mahendrawada_results/peaks/ACA1xstandard/A/ACA1xstandard_A_annotatePeaks.err

@@ -1,46 +0,0 @@
-
-	Using Custom Genome
-	Peak file = results/peaks/ACA1xstandard/A/ACA1xstandard_A_peaks.txt
-	Genome = S288C_reference_sequence_R64-5-1_20240529_chr_normalized.fa
-	Organism = unknown
-	Custom annotation GTF file: /ref/mblab/data/yeast_data/reprocess_mahendrawada/mahendrawada_slurm_pipeline/sacCer3.ensGene.gtf (using transcript_id)
-	Peak/BED file conversion summary:
-		BED/Header formatted lines: 0
-		peakfile formatted lines: 362
-		Duplicated Peak IDs: 0
-
-	Peak File Statistics:
-		Total Peaks: 362
-		Redundant Peak IDs: 0
-		Peaks lacking information: 0 (need at least 5 columns per peak)
-		Peaks with misformatted coordinates: 0 (should be integer)
-		Peaks with misformatted strand: 0 (should be either +/- or 0/1)
-
-	Peak file looks good!
-
-	Reading Positions...
-	-----------------------
-	offset=0
-	Finding Closest TSS...
-	Processing custom annotation file...
-	Features that will be considered:
-		exon
-
-	7507 lines contained useful feature information
-	Parsing GTF to make an annotation table from attributes...
-	Features that will be considered:
-		exon
-
-	7507 lines contained useful feature information
-assignGenomeAnnotation: error while loading shared libraries: libstdc++.so.6: cannot open shared object file: No such file or directory
-	Could not find basic annotation file (0.657028964794339.2.tmp)
-	Features that will be considered:
-		exon
-
-	7507 lines contained useful feature information
-assignGenomeAnnotation: error while loading shared libraries: libstdc++.so.6: cannot open shared object file: No such file or directory
-	Counting Tags in Peaks from each directory...
-	Organism: unknown
-	Outputing Annotation File...
-	Done annotating peaks file
-

scripts/data/reprocessed_mahendrawada_results/peaks/ACA1xstandard/A/ACA1xstandard_A_annotated_peaks.txt

@@ -1,363 +0,0 @@
-PeakID (cmd=annotatePeaks.pl results/peaks/ACA1xstandard/A/ACA1xstandard_A_peaks.txt /ref/mblab/data/S288C_R64/S288C_reference_genome_R64-5-1_20240529/S288C_reference_sequence_R64-5-1_20240529_chr_normalized.fa -gtf /ref/mblab/data/yeast_data/reprocess_mahendrawada/mahendrawada_slurm_pipeline/sacCer3.ensGene.gtf)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type
-chrVI-1	chrVI	31321	31387	+	2383.9	0.804	NA	NA	-814	YFL051C_mRNA	YFL051C	YFL051C_mRNA			YFL051C			
-chrXVI-1	chrXVI	678997	679063	+	2093.5	0.695	NA	NA	79	YPR064W_mRNA	YPR064W	YPR064W_mRNA			YPR064W			
-chrX-2	chrX	173267	173333	+	1460.2	0.758	NA	NA	-933	YJL130C_mRNA	YJL130C	YJL130C_mRNA			YJL130C			
-chrXIV-1	chrXIV	652042	652108	+	1376.5	0.753	NA	NA	-363	YNR013C_mRNA	YNR013C	YNR013C_mRNA			YNR013C			
-chrXIII-1	chrXIII	540614	540680	+	1360.8	0.620	NA	NA	-552	YMR136W_mRNA	YMR136W	YMR136W_mRNA			YMR136W			
-chrXV-1	chrXV	908698	908764	+	1311.0	0.641	NA	NA	-612	YOR317W_mRNA	YOR317W	YOR317W_mRNA			YOR317W			
-chrIX-2	chrIX	386566	386632	+	1298.0	0.717	NA	NA	-898	YIR018C-A_mRNA	YIR018C-A	YIR018C-A_mRNA			YIR018C-A			
-chrVII-1	chrVII	483651	483717	+	1274.4	0.672	NA	NA	424	YGL007W_mRNA	YGL007W	YGL007W_mRNA			YGL007W			
-chrXIII-2	chrXIII	306268	306334	+	1258.7	0.604	NA	NA	-708	YMR016C_mRNA	YMR016C	YMR016C_mRNA			YMR016C			
-chrXI-1	chrXI	231064	231130	+	1256.1	0.643	NA	NA	-1130	YKL109W_mRNA	YKL109W	YKL109W_mRNA			YKL109W			
-chrXV-3	chrXV	1084685	1084751	+	1248.2	0.736	NA	NA	-349	YOR394C-A_mRNA	YOR394C-A	YOR394C-A_mRNA			YOR394C-A			
-chrXV-2	chrXV	27995	28061	+	1164.5	0.746	NA	NA	944	YOL155W-A_mRNA	YOL155W-A	YOL155W-A_mRNA			YOL155W-A			
-chrX-3	chrX	703664	703730	+	1148.8	0.583	NA	NA	-188	YJR146W_mRNA	YJR146W	YJR146W_mRNA			YJR146W			
-chrXIII-4	chrXIII	306562	306628	+	1133.1	0.566	NA	NA	-894	YMR017W_mRNA	YMR017W	YMR017W_mRNA			YMR017W			
-chrXIV-2	chrXIV	6501	6567	+	1109.5	0.808	NA	NA	-27	YNL338W_mRNA	YNL338W	YNL338W_mRNA			YNL338W			
-chrXIII-3	chrXIII	540369	540435	+	1054.6	0.551	NA	NA	-346	YMR135C_mRNA	YMR135C	YMR135C_mRNA			YMR135C			
-chrXIII-5	chrXIII	5438	5504	+	934.2	0.710	NA	NA	-787	YML133C_mRNA	YML133C	YML133C_mRNA			YML133C			
-chrVII-3	chrVII	1084430	1084496	+	908.0	0.728	NA	NA	-401	YGR296W_mRNA	YGR296W	YGR296W_mRNA			YGR296W			
-chrIV-3	chrIV	1525552	1525618	+	900.2	0.633	NA	NA	-62	YDR544C_mRNA	YDR544C	YDR544C_mRNA			YDR544C			
-chrXVI-2	chrXVI	6426	6492	+	895.0	0.799	NA	NA	-452	YPL283C_mRNA	YPL283C	YPL283C_mRNA			YPL283C			
-chrIV-2	chrIV	976732	976798	+	879.3	0.708	NA	NA	464	YDR260C_mRNA	YDR260C	YDR260C_mRNA			YDR260C			
-chrXIV-3	chrXIV	301930	301996	+	871.4	0.593	NA	NA	-717	YNL178W_mRNA	YNL178W	YNL178W_mRNA			YNL178W			
-chrXII-47	chrXII	368374	368440	+	860.9	0.677	NA	NA	-283	YLR108C_mRNA	YLR108C	YLR108C_mRNA			YLR108C			
-chrXII-48	chrXII	5518	5584	+	855.7	0.791	NA	NA	-54	YLL066W-B_mRNA	YLL066W-B	YLL066W-B_mRNA			YLL066W-B			
-chrXVI-6	chrXVI	503051	503117	+	834.8	0.689	NA	NA	-54	YPL025C_mRNA	YPL025C	YPL025C_mRNA			YPL025C			
-chrVII-4	chrVII	208764	208830	+	821.7	0.732	NA	NA	-209	YGL157W_mRNA	YGL157W	YGL157W_mRNA			YGL157W			
-chrXIV-5	chrXIV	559594	559660	+	806.0	0.749	NA	NA	-187	YNL036W_mRNA	YNL036W	YNL036W_mRNA			YNL036W			
-chrVII-5	chrVII	884107	884173	+	800.8	0.700	NA	NA	-330	YGR192C_mRNA	YGR192C	YGR192C_mRNA			YGR192C			
-chrXIII-6	chrXIII	798026	798092	+	798.1	0.786	NA	NA	-134	YMR265C_mRNA	YMR265C	YMR265C_mRNA			YMR265C			
-chrXII-52	chrXII	11081	11147	+	761.5	0.812	NA	NA	-612	YLL065W_mRNA	YLL065W	YLL065W_mRNA			YLL065W			
-chrXIV-4	chrXIV	301273	301339	+	730.1	0.703	NA	NA	-203	YNL179C_mRNA	YNL179C	YNL179C_mRNA			YNL179C			
-chrXV-4	chrXV	232202	232268	+	724.9	0.651	NA	NA	-480	YOL052C-A_mRNA	YOL052C-A	YOL052C-A_mRNA			YOL052C-A			
-chrV-1	chrV	85041	85107	+	717.0	0.598	NA	NA	471	YEL035C_mRNA	YEL035C	YEL035C_mRNA			YEL035C			
-chrX-4	chrX	68993	69059	+	703.9	0.745	NA	NA	-244	YJL196C_mRNA	YJL196C	YJL196C_mRNA			YJL196C			
-chrIV-4	chrIV	1345408	1345474	+	696.1	0.723	NA	NA	-206	YDR442W_mRNA	YDR442W	YDR442W_mRNA			YDR442W			
-chrVII-2	chrVII	384910	384976	+	696.1	0.714	NA	NA	-253	YGL062W_mRNA	YGL062W	YGL062W_mRNA			YGL062W			
-chrI-1	chrI	29879	29945	+	693.5	0.642	NA	NA	-1655	YAL062W_mRNA	YAL062W	YAL062W_mRNA			YAL062W			
-chrXVI-3	chrXVI	214920	214986	+	683.0	0.631	NA	NA	-991	YPL177C_mRNA	YPL177C	YPL177C_mRNA			YPL177C			
-chrII-3	chrII	5694	5760	+	677.8	0.695	NA	NA	-63	YBL109W_mRNA	YBL109W	YBL109W_mRNA			YBL109W			
-chrXII-53	chrXII	5666	5732	+	672.5	0.715	NA	NA	94	YLL066W-B_mRNA	YLL066W-B	YLL066W-B_mRNA			YLL066W-B			
-chrXI-2	chrXI	356226	356292	+	672.5	0.663	NA	NA	-63	YKL044W_mRNA	YKL044W	YKL044W_mRNA			YKL044W			
-chrXVI-5	chrXVI	432056	432122	+	662.1	0.517	NA	NA	194	YPL062W_mRNA	YPL062W	YPL062W_mRNA			YPL062W			
-chrXVI-4	chrXVI	431919	431985	+	638.5	0.629	NA	NA	57	YPL062W_mRNA	YPL062W	YPL062W_mRNA			YPL062W			
-chrXI-3	chrXI	518246	518312	+	633.3	0.770	NA	NA	81	YKR041W_mRNA	YKR041W	YKR041W_mRNA			YKR041W			
-chrIX-3	chrIX	22346	22412	+	622.8	0.571	NA	NA	2532	YIL170W	YIL170W	YIL170W			YIL170W			NA
-chrXII-51	chrXII	1071646	1071712	+	620.2	0.674	NA	NA	31	YLR466C-B_mRNA	YLR466C-B	YLR466C-B_mRNA			YLR466C-B			
-chrVIII-1	chrVIII	557052	557118	+	612.3	0.659	NA	NA	-43	YHR217C_mRNA	YHR217C	YHR217C_mRNA			YHR217C			
-chrXI-4	chrXI	356092	356158	+	591.4	0.584	NA	NA	-197	YKL044W_mRNA	YKL044W	YKL044W_mRNA			YKL044W			
-chrVII-6	chrVII	987501	987567	+	588.8	0.555	NA	NA	-515	YGR249W_mRNA	YGR249W	YGR249W_mRNA			YGR249W			
-chrXIII-8	chrXIII	557206	557272	+	583.6	0.648	NA	NA	-764	YMR145C_mRNA	YMR145C	YMR145C_mRNA			YMR145C			
-chrXIV-6	chrXIV	739303	739369	+	578.3	0.601	NA	NA	-615	YNR060W_mRNA	YNR060W	YNR060W_mRNA			YNR060W			
-chrXIV-7	chrXIV	441081	441147	+	575.7	0.699	NA	NA	-195	YNL097C-B_mRNA	YNL097C-B	YNL097C-B_mRNA			YNL097C-B			
-chrIV-5	chrIV	976520	976586	+	573.1	0.620	NA	NA	676	YDR260C_mRNA	YDR260C	YDR260C_mRNA			YDR260C			
-chrVII-8	chrVII	483210	483276	+	562.6	0.588	NA	NA	-17	YGL007W_mRNA	YGL007W	YGL007W_mRNA			YGL007W			
-chrXIII-7	chrXIII	510994	511060	+	557.4	0.566	NA	NA	48	YMR122C_mRNA	YMR122C	YMR122C_mRNA			YMR122C			
-chrVII-7	chrVII	809906	809972	+	552.2	0.660	NA	NA	-288	YGR161W-C_mRNA	YGR161W-C	YGR161W-C_mRNA			YGR161W-C			
-chrIX-5	chrIX	254630	254696	+	552.2	0.624	NA	NA	120	YIL054W_mRNA	YIL054W	YIL054W_mRNA			YIL054W			
-chrIV-6	chrIV	132906	132972	+	546.9	0.596	NA	NA	-498	YDL182W_mRNA	YDL182W	YDL182W_mRNA			YDL182W			
-chrV-3	chrV	77688	77754	+	541.7	0.707	NA	NA	-332	YEL040W_mRNA	YEL040W	YEL040W_mRNA			YEL040W			
-chrVII-9	chrVII	23345	23411	+	539.1	0.662	NA	NA	-557	YGL253W_mRNA	YGL253W	YGL253W_mRNA			YGL253W			
-chrIV-8	chrIV	538967	539033	+	539.1	0.590	NA	NA	-533	YDR040C_mRNA	YDR040C	YDR040C_mRNA			YDR040C			
-chrVI-2	chrVI	4533	4599	+	536.5	0.737	NA	NA	-500	YFL063W_mRNA	YFL063W	YFL063W_mRNA			YFL063W			
-chrV-2	chrV	570325	570391	+	533.8	0.748	NA	NA	-451	YER188C-A_mRNA	YER188C-A	YER188C-A_mRNA			YER188C-A			
-chrIV-7	chrIV	593511	593577	+	533.8	0.710	NA	NA	-349	YDR074W_mRNA	YDR074W	YDR074W_mRNA			YDR074W			
-chrIX-6	chrIX	386815	386881	+	515.5	0.598	NA	NA	-1147	YIR018C-A_mRNA	YIR018C-A	YIR018C-A_mRNA			YIR018C-A			
-chrIII-1	chrIII	122525	122591	+	510.3	0.707	NA	NA	-230	YCR005C_mRNA	YCR005C	YCR005C_mRNA			YCR005C			
-chrVII-10	chrVII	483399	483465	+	510.3	0.685	NA	NA	172	YGL007W_mRNA	YGL007W	YGL007W_mRNA			YGL007W			
-chrIX-4	chrIX	254481	254547	+	507.7	0.676	NA	NA	-29	YIL054W_mRNA	YIL054W	YIL054W_mRNA			YIL054W			
-chrII-2	chrII	375936	376002	+	507.7	0.666	NA	NA	-279	YBR068C_mRNA	YBR068C	YBR068C_mRNA			YBR068C			
-chrXV-6	chrXV	904241	904307	+	499.8	0.651	NA	NA	-184	YOR314W-A_mRNA	YOR314W-A	YOR314W-A_mRNA			YOR314W-A			
-chrV-4	chrV	85346	85412	+	499.8	0.585	NA	NA	166	YEL035C_mRNA	YEL035C	YEL035C_mRNA			YEL035C			
-chrV-5	chrV	268600	268666	+	497.2	0.706	NA	NA	-520	YER056C_mRNA	YER056C	YER056C_mRNA			YER056C			
-chrXIII-10	chrXIII	287659	287725	+	494.6	0.624	NA	NA	-387	YMR011W_mRNA	YMR011W	YMR011W_mRNA			YMR011W			
-chrXI-7	chrXI	147020	147086	+	494.6	0.809	NA	NA	-979	YKL162C-A_mRNA	YKL162C-A	YKL162C-A_mRNA			YKL162C-A			
-chrX-5	chrX	525944	526010	+	492.0	0.588	NA	NA	-358	YJR048W_mRNA	YJR048W	YJR048W_mRNA			YJR048W			
-chrXI-6	chrXI	518907	518973	+	492.0	0.624	NA	NA	-374	YKR040C_mRNA	YKR040C	YKR040C_mRNA			YKR040C			
-chrXVI-7	chrXVI	340708	340774	+	486.7	0.640	NA	NA	797	YPL111W_mRNA	YPL111W	YPL111W_mRNA			YPL111W			
-chrXV-5	chrXV	988091	988157	+	486.7	0.646	NA	NA	658	YOR348C_mRNA	YOR348C	YOR348C_mRNA			YOR348C			
-chrXIV-8	chrXIV	281788	281854	+	478.9	0.789	NA	NA	-574	YNL190W_mRNA	YNL190W	YNL190W_mRNA			YNL190W			
-chrXV-7	chrXV	978848	978914	+	478.9	0.589	NA	NA	-812	YOR344C_mRNA	YOR344C	YOR344C_mRNA			YOR344C			
-chrXI-5	chrXI	355641	355707	+	476.3	0.583	NA	NA	-648	YKL044W_mRNA	YKL044W	YKL044W_mRNA			YKL044W			
-chrVII-12	chrVII	609885	609951	+	476.3	0.667	NA	NA	334	snR48_snoRNA	snR48	snR48_snoRNA			snR48			
-chrVII-11	chrVII	592720	592786	+	476.3	0.654	NA	NA	-311	YGR050C_mRNA	YGR050C	YGR050C_mRNA			YGR050C			
-chrV-6	chrV	225641	225707	+	473.6	0.832	NA	NA	-215	YER037W_mRNA	YER037W	YER037W_mRNA			YER037W			
-chrII-1	chrII	371054	371120	+	473.6	0.680	NA	NA	-388	YBR066C_mRNA	YBR066C	YBR066C_mRNA			YBR066C			
-chrXII-54	chrXII	370978	371044	+	471.0	0.637	NA	NA	220	YLR112W_mRNA	YLR112W	YLR112W_mRNA			YLR112W			
-chrXIII-11	chrXIII	302794	302860	+	471.0	0.652	NA	NA	-342	YMR015C_mRNA	YMR015C	YMR015C_mRNA			YMR015C			
-chrVIII-2	chrVIII	122465	122531	+	471.0	0.647	NA	NA	267	YHR007C-A_mRNA	YHR007C-A	YHR007C-A_mRNA			YHR007C-A			
-chrX-7	chrX	294505	294571	+	465.8	0.627	NA	NA	-261	YJL077W-A_mRNA	YJL077W-A	YJL077W-A_mRNA			YJL077W-A			
-chrXV-8	chrXV	909074	909140	+	463.2	0.676	NA	NA	-236	YOR317W_mRNA	YOR317W	YOR317W_mRNA			YOR317W			
-chrXIII-9	chrXIII	347166	347232	+	463.2	0.763	NA	NA	-682	YMR037C_mRNA	YMR037C	YMR037C_mRNA			YMR037C			
-chrV-7	chrV	123290	123356	+	463.2	0.564	NA	NA	-334	YEL017W_mRNA	YEL017W	YEL017W_mRNA			YEL017W			
-chrXV-11	chrXV	384969	385035	+	460.6	0.558	NA	NA	402	YOR029W_mRNA	YOR029W	YOR029W_mRNA			YOR029W			
-chrXVI-10	chrXVI	40632	40698	+	457.9	0.584	NA	NA	-378	YPL265W_mRNA	YPL265W	YPL265W_mRNA			YPL265W			
-chrXVI-9	chrXVI	527021	527087	+	452.7	0.638	NA	NA	-171	YPL015C_mRNA	YPL015C	YPL015C_mRNA			YPL015C			
-chrXIII-13	chrXIII	287277	287343	+	452.7	0.625	NA	NA	-769	YMR011W_mRNA	YMR011W	YMR011W_mRNA			YMR011W			
-chrXI-8	chrXI	355907	355973	+	452.7	0.564	NA	NA	-382	YKL044W_mRNA	YKL044W	YKL044W_mRNA			YKL044W			
-chrXIII-14	chrXIII	388271	388337	+	450.1	0.608	NA	NA	-60	YMR056C_mRNA	YMR056C	YMR056C_mRNA			YMR056C			
-chrXVI-17	chrXVI	40424	40490	+	444.9	0.601	NA	NA	-586	YPL265W_mRNA	YPL265W	YPL265W_mRNA			YPL265W			
-chrXVI-11	chrXVI	465718	465784	+	444.9	0.915	NA	NA	-211	YPL047W_mRNA	YPL047W	YPL047W_mRNA			YPL047W			
-chrVII-13	chrVII	484124	484190	+	442.2	0.621	NA	NA	897	YGL007W_mRNA	YGL007W	YGL007W_mRNA			YGL007W			
-chrII-5	chrII	466385	466451	+	437.0	0.689	NA	NA	-648	YBR112C_mRNA	YBR112C	YBR112C_mRNA			YBR112C			
-chrXI-9	chrXI	514583	514649	+	437.0	0.661	NA	NA	-447	YKR039W_mRNA	YKR039W	YKR039W_mRNA			YKR039W			
-chrXV-10	chrXV	988532	988598	+	434.4	0.627	NA	NA	217	YOR348C_mRNA	YOR348C	YOR348C_mRNA			YOR348C			
-chrIV-9	chrIV	159390	159456	+	434.4	0.747	NA	NA	-181	YDL168W_mRNA	YDL168W	YDL168W_mRNA			YDL168W			
-chrXVI-13	chrXVI	739665	739731	+	429.2	0.619	NA	NA	-129	YPR105C_mRNA	YPR105C	YPR105C_mRNA			YPR105C			
-chrXVI-12	chrXVI	193129	193195	+	429.2	0.644	NA	NA	-486	YPL187W_mRNA	YPL187W	YPL187W_mRNA			YPL187W			
-chrII-4	chrII	419700	419766	+	429.2	0.663	NA	NA	-569	YBR085C-A_mRNA	YBR085C-A	YBR085C-A_mRNA			YBR085C-A			
-chrXVI-14	chrXVI	840715	840781	+	426.5	0.754	NA	NA	-518	YPR157W_mRNA	YPR157W	YPR157W_mRNA			YPR157W			
-chrIV-11	chrIV	387057	387123	+	426.5	0.641	NA	NA	-1503	YDL037C_mRNA	YDL037C	YDL037C_mRNA			YDL037C			
-chrXV-12	chrXV	520653	520719	+	426.5	0.571	NA	NA	-667	YOR107W_mRNA	YOR107W	YOR107W_mRNA			YOR107W			
-chrIV-12	chrIV	369148	369214	+	426.5	0.743	NA	NA	-590	YDL047W_mRNA	YDL047W	YDL047W_mRNA			YDL047W			
-chrXIII-12	chrXIII	915259	915325	+	423.9	0.666	NA	NA	-754	YMR319C_mRNA	YMR319C	YMR319C_mRNA			YMR319C			
-chrV-8	chrV	6296	6362	+	423.9	0.733	NA	NA	203	YEL074W_mRNA	YEL074W	YEL074W_mRNA			YEL074W			
-chrXI-10	chrXI	230763	230829	+	423.9	0.567	NA	NA	-916	YKL110C_mRNA	YKL110C	YKL110C_mRNA			YKL110C			
-chrXVI-15	chrXVI	502500	502566	+	421.3	0.604	NA	NA	-350	YPL026C_mRNA	YPL026C	YPL026C_mRNA			YPL026C			
-chrXII-55	chrXII	809316	809382	+	421.3	0.582	NA	NA	-648	YLR342W_mRNA	YLR342W	YLR342W_mRNA			YLR342W			
-chrXII-56	chrXII	1065203	1065269	+	421.3	0.704	NA	NA	-720	YLR462W_mRNA	YLR462W	YLR462W_mRNA			YLR462W			
-chrII-6	chrII	419891	419957	+	416.1	0.617	NA	NA	-760	YBR085C-A_mRNA	YBR085C-A	YBR085C-A_mRNA			YBR085C-A			
-chrXV-13	chrXV	770361	770427	+	416.1	0.539	NA	NA	-406	YOR230W_mRNA	YOR230W	YOR230W_mRNA			YOR230W			
-chrV-9	chrV	491225	491291	+	413.5	0.705	NA	NA	-229	YER158W-A_mRNA	YER158W-A	YER158W-A_mRNA			YER158W-A			
-chrXVI-8	chrXVI	829292	829358	+	413.5	0.690	NA	NA	-593	YPR149W_mRNA	YPR149W	YPR149W_mRNA			YPR149W			
-chrII-8	chrII	140551	140617	+	413.5	0.632	NA	NA	-324	YBL042C_mRNA	YBL042C	YBL042C_mRNA			YBL042C			
-chrXIV-9	chrXIV	662198	662264	+	413.5	0.674	NA	NA	-682	YNR017W_mRNA	YNR017W	YNR017W_mRNA			YNR017W			
-chrIV-13	chrIV	410934	411000	+	410.8	0.804	NA	NA	588	tA(AGC)D_tRNA	tA(AGC)D	tA(AGC)D_tRNA			tA(AGC)D			
-chrVII-15	chrVII	20423	20489	+	408.2	0.563	NA	NA	-522	YGL255W_mRNA	YGL255W	YGL255W_mRNA			YGL255W			
-chrXIII-15	chrXIII	282987	283053	+	408.2	0.657	NA	NA	-436	YMR008C_mRNA	YMR008C	YMR008C_mRNA			YMR008C			
-chrXV-16	chrXV	55237	55303	+	405.6	0.647	NA	NA	-166	YOL143C_mRNA	YOL143C	YOL143C_mRNA			YOL143C			
-chrXV-17	chrXV	882195	882261	+	405.6	0.612	NA	NA	-537	YOR302W_mRNA	YOR302W	YOR302W_mRNA			YOR302W			
-chrIV-10	chrIV	1014041	1014107	+	403.0	0.664	NA	NA	-431	YDR276C_mRNA	YDR276C	YDR276C_mRNA			YDR276C			
-chrXV-19	chrXV	285783	285849	+	400.4	0.775	NA	NA	-356	YOL020W_mRNA	YOL020W	YOL020W_mRNA			YOL020W			
-chrXV-18	chrXV	43515	43581	+	400.4	0.856	NA	NA	-146	YOL151W_mRNA	YOL151W	YOL151W_mRNA			YOL151W			
-chrXII-57	chrXII	950814	950880	+	397.8	0.644	NA	NA	-309	YLR413W_mRNA	YLR413W	YLR413W_mRNA			YLR413W			
-chrXI-11	chrXI	231652	231718	+	397.8	0.662	NA	NA	-542	YKL109W_mRNA	YKL109W	YKL109W_mRNA			YKL109W			
-chrVII-16	chrVII	404861	404927	+	397.8	0.953	NA	NA	-576	tR(UCU)G1_tRNA	tR(UCU)G1	tR(UCU)G1_tRNA			tR(UCU)G1			
-chrXVI-23	chrXVI	38701	38767	+	397.8	0.648	NA	NA	-387	YPL266W_mRNA	YPL266W	YPL266W_mRNA			YPL266W			
-chrXIII-18	chrXIII	906059	906125	+	395.1	0.634	NA	NA	-119	YMR316C-A_mRNA	YMR316C-A	YMR316C-A_mRNA			YMR316C-A			
-chrXI-13	chrXI	518709	518775	+	395.1	0.571	NA	NA	-176	YKR040C_mRNA	YKR040C	YKR040C_mRNA			YKR040C			
-chrXI-12	chrXI	258890	258956	+	395.1	0.779	NA	NA	-10	YKL097C_mRNA	YKL097C	YKL097C_mRNA			YKL097C			
-chrIX-7	chrIX	21930	21996	+	395.1	0.628	NA	NA	2116	YIL170W	YIL170W	YIL170W			YIL170W			NA
-chrIV-17	chrIV	507465	507531	+	387.3	0.652	NA	NA	-649	YDR033W_mRNA	YDR033W	YDR033W_mRNA			YDR033W			
-chrV-10	chrV	284833	284899	+	384.7	0.648	NA	NA	-644	YER064C_mRNA	YER064C	YER064C_mRNA			YER064C			
-chrVII-17	chrVII	23622	23688	+	384.7	0.565	NA	NA	-280	YGL253W_mRNA	YGL253W	YGL253W_mRNA			YGL253W			
-chrXII-59	chrXII	370433	370499	+	384.7	0.637	NA	NA	75	YLR111W_mRNA	YLR111W	YLR111W_mRNA			YLR111W			
-chrII-7	chrII	555828	555894	+	382.1	0.633	NA	NA	-688	YBR158W_mRNA	YBR158W	YBR158W_mRNA			YBR158W			
-chrIV-14	chrIV	721745	721811	+	382.1	0.636	NA	NA	-481	YDR133C_mRNA	YDR133C	YDR133C_mRNA			YDR133C			
-chrXIII-19	chrXIII	653212	653278	+	382.1	0.636	NA	NA	-109	YMR194C-A_mRNA	YMR194C-A	YMR194C-A_mRNA			YMR194C-A			
-chrX-8	chrX	220367	220433	+	382.1	0.633	NA	NA	-384	YJL107C_mRNA	YJL107C	YJL107C_mRNA			YJL107C			
-chrIV-15	chrIV	543804	543870	+	382.1	0.670	NA	NA	-468	YDR043C_mRNA	YDR043C	YDR043C_mRNA			YDR043C			
-chrXVI-19	chrXVI	455215	455281	+	379.4	0.684	NA	NA	-258	YPL055C_mRNA	YPL055C	YPL055C_mRNA			YPL055C			
-chrII-16	chrII	5497	5563	+	379.4	0.795	NA	NA	-260	YBL109W_mRNA	YBL109W	YBL109W_mRNA			YBL109W			
-chrIV-19	chrIV	1161897	1161963	+	379.4	0.659	NA	NA	519	YDR344C_mRNA	YDR344C	YDR344C_mRNA			YDR344C			
-chrXV-22	chrXV	109599	109665	+	376.8	0.571	NA	NA	456	YOL110W_mRNA	YOL110W	YOL110W_mRNA			YOL110W			
-chrII-9	chrII	136042	136108	+	376.8	0.651	NA	NA	77	YBL044W_mRNA	YBL044W	YBL044W_mRNA			YBL044W			
-chrIII-2	chrIII	122814	122880	+	376.8	0.541	NA	NA	156	YCR006C_mRNA	YCR006C	YCR006C_mRNA			YCR006C			
-chrXII-58	chrXII	954964	955030	+	376.8	0.639	NA	NA	-13	YLR417W_mRNA	YLR417W	YLR417W_mRNA			YLR417W			
-chrV-11	chrV	69359	69425	+	374.2	0.652	NA	NA	-127	YEL045C_mRNA	YEL045C	YEL045C_mRNA			YEL045C			
-chrXII-61	chrXII	636318	636384	+	374.2	0.758	NA	NA	-429	YLR249W_mRNA	YLR249W	YLR249W_mRNA			YLR249W			
-chrIV-16	chrIV	599931	599997	+	371.6	0.680	NA	NA	-829	YDR077W_mRNA	YDR077W	YDR077W_mRNA			YDR077W			
-chrVII-20	chrVII	1083532	1083598	+	371.6	0.659	NA	NA	-836	YGR295C_mRNA	YGR295C	YGR295C_mRNA			YGR295C			
-chrIV-20	chrIV	1469012	1469078	+	371.6	0.653	NA	NA	-355	YDR510W_mRNA	YDR510W	YDR510W_mRNA			YDR510W			
-chrXII-60	chrXII	416930	416996	+	371.6	0.721	NA	NA	-43	YLR137W_mRNA	YLR137W	YLR137W_mRNA			YLR137W			
-chrXI-14	chrXI	615004	615070	+	369.0	0.703	NA	NA	-693	YKR093W_mRNA	YKR093W	YKR093W_mRNA			YKR093W			
-chrV-13	chrV	84775	84841	+	369.0	0.668	NA	NA	-256	YEL036C_mRNA	YEL036C	YEL036C_mRNA			YEL036C			
-chrII-13	chrII	419435	419501	+	366.4	0.590	NA	NA	-304	YBR085C-A_mRNA	YBR085C-A	YBR085C-A_mRNA			YBR085C-A			
-chrXII-66	chrXII	10852	10918	+	366.4	0.567	NA	NA	-841	YLL065W_mRNA	YLL065W	YLL065W_mRNA			YLL065W			
-chrXIII-20	chrXIII	119275	119341	+	366.4	0.709	NA	NA	-410	YML075C_mRNA	YML075C	YML075C_mRNA			YML075C			
-chrXVI-21	chrXVI	551937	552003	+	366.4	0.739	NA	NA	-50	YPL003W_mRNA	YPL003W	YPL003W_mRNA			YPL003W			
-chrVII-22	chrVII	592497	592563	+	366.4	0.536	NA	NA	-88	YGR050C_mRNA	YGR050C	YGR050C_mRNA			YGR050C			
-chrIV-21	chrIV	1011742	1011808	+	363.7	0.644	NA	NA	185	YDR274C_mRNA	YDR274C	YDR274C_mRNA			YDR274C			
-chrXV-23	chrXV	638827	638893	+	363.7	0.734	NA	NA	-302	YOR161C_mRNA	YOR161C	YOR161C_mRNA			YOR161C			
-chrXIV-12	chrXIV	6268	6334	+	361.1	0.763	NA	NA	-203	YNL339C_mRNA	YNL339C	YNL339C_mRNA			YNL339C			
-chrII-17	chrII	341870	341936	+	361.1	0.755	NA	NA	-1152	YBR053C_mRNA	YBR053C	YBR053C_mRNA			YBR053C			
-chrX-10	chrX	195662	195728	+	361.1	0.582	NA	NA	-592	YJL115W_mRNA	YJL115W	YJL115W_mRNA			YJL115W			
-chrXIII-16	chrXIII	472934	473000	+	358.5	0.606	NA	NA	297	YMR103C_mRNA	YMR103C	YMR103C_mRNA			YMR103C			
-chrVIII-3	chrVIII	462176	462242	+	358.5	0.719	NA	NA	-293	YHR179W_mRNA	YHR179W	YHR179W_mRNA			YHR179W			
-chrVIII-4	chrVIII	521969	522035	+	358.5	0.812	NA	NA	-265	YHR210C_mRNA	YHR210C	YHR210C_mRNA			YHR210C			
-chrII-11	chrII	561118	561184	+	358.5	0.691	NA	NA	-483	YBR161W_mRNA	YBR161W	YBR161W_mRNA			YBR161W			
-chrVII-26	chrVII	1000178	1000244	+	355.9	0.636	NA	NA	-716	YGR254W_mRNA	YGR254W	YGR254W_mRNA			YGR254W			
-chrXII-63	chrXII	677722	677788	+	355.9	0.703	NA	NA	-31	YLR266C_mRNA	YLR266C	YLR266C_mRNA			YLR266C			
-chrII-15	chrII	554774	554840	+	353.3	0.674	NA	NA	-497	YBR157C_mRNA	YBR157C	YBR157C_mRNA			YBR157C			
-chrXIV-11	chrXIV	576246	576312	+	353.3	0.642	NA	NA	-229	YNL031C_mRNA	YNL031C	YNL031C_mRNA			YNL031C			
-chrIV-22	chrIV	680224	680290	+	353.3	0.738	NA	NA	-493	YDR111C_mRNA	YDR111C	YDR111C_mRNA			YDR111C			
-chrXI-15	chrXI	382077	382143	+	353.3	0.624	NA	NA	38	YKL031W_mRNA	YKL031W	YKL031W_mRNA			YKL031W			
-chrXVI-25	chrXVI	280209	280275	+	353.3	0.700	NA	NA	-238	YPL144W_mRNA	YPL144W	YPL144W_mRNA			YPL144W			
-chrXVI-18	chrXVI	425618	425684	+	353.3	0.690	NA	NA	196	YPL067C_mRNA	YPL067C	YPL067C_mRNA			YPL067C			
-chrXV-21	chrXV	109766	109832	+	350.7	0.534	NA	NA	-498	YOL109W_mRNA	YOL109W	YOL109W_mRNA			YOL109W			
-chrIV-18	chrIV	551028	551094	+	348.0	0.564	NA	NA	-485	YDR046C_mRNA	YDR046C	YDR046C_mRNA			YDR046C			
-chrXVI-27	chrXVI	520495	520561	+	342.8	0.760	NA	NA	-295	YPL017C_mRNA	YPL017C	YPL017C_mRNA			YPL017C			
-chrIX-8	chrIX	388516	388582	+	342.8	0.548	NA	NA	-2848	YIR018C-A_mRNA	YIR018C-A	YIR018C-A_mRNA			YIR018C-A			
-chrVII-21	chrVII	599192	599258	+	342.8	0.690	NA	NA	-192	YGR055W_mRNA	YGR055W	YGR055W_mRNA			YGR055W			
-chrXVI-26	chrXVI	296837	296903	+	340.2	0.580	NA	NA	-223	YPL137C_mRNA	YPL137C	YPL137C_mRNA			YPL137C			
-chrXVI-28	chrXVI	297299	297365	+	337.6	0.514	NA	NA	-221	YPL135W_mRNA	YPL135W	YPL135W_mRNA			YPL135W			
-chrII-12	chrII	555958	556024	+	337.6	0.600	NA	NA	-558	YBR158W_mRNA	YBR158W	YBR158W_mRNA			YBR158W			
-chrX-11	chrX	268429	268495	+	337.6	0.601	NA	NA	-337	YJL088W_mRNA	YJL088W	YJL088W_mRNA			YJL088W			
-chrXV-31	chrXV	1043240	1043306	+	335.0	0.560	NA	NA	82	YOR376W_mRNA	YOR376W	YOR376W_mRNA			YOR376W			
-chrIV-23	chrIV	636198	636264	+	335.0	0.741	NA	NA	296	YDR095C_mRNA	YDR095C	YDR095C_mRNA			YDR095C			
-chrXIII-22	chrXIII	271961	272027	+	332.3	0.683	NA	NA	-199	YMR002W_mRNA	YMR002W	YMR002W_mRNA			YMR002W			
-chrIII-4	chrIII	1019	1085	+	332.3	0.545	NA	NA	-340	YCL076W_mRNA	YCL076W	YCL076W_mRNA			YCL076W			
-chrIV-26	chrIV	722467	722533	+	329.7	0.679	NA	NA	-1203	YDR133C_mRNA	YDR133C	YDR133C_mRNA			YDR133C			
-chrXV-20	chrXV	882480	882546	+	327.1	0.660	NA	NA	-252	YOR302W_mRNA	YOR302W	YOR302W_mRNA			YOR302W			
-chrXV-29	chrXV	27556	27622	+	327.1	0.644	NA	NA	505	YOL155W-A_mRNA	YOL155W-A	YOL155W-A_mRNA			YOL155W-A			
-chrVI-4	chrVI	176661	176727	+	327.1	0.598	NA	NA	-303	YFR015C_mRNA	YFR015C	YFR015C_mRNA			YFR015C			
-chrIV-25	chrIV	1016128	1016194	+	327.1	0.707	NA	NA	-459	YDR277C_mRNA	YDR277C	YDR277C_mRNA			YDR277C			
-chrVII-30	chrVII	371024	371090	+	327.1	0.619	NA	NA	305	YGL072C_mRNA	YGL072C	YGL072C_mRNA			YGL072C			
-chrVI-5	chrVI	255558	255624	+	327.1	0.681	NA	NA	-542	YFR053C_mRNA	YFR053C	YFR053C_mRNA			YFR053C			
-chrV-15	chrV	335521	335587	+	324.5	0.754	NA	NA	-366	YER088C_mRNA	YER088C	YER088C_mRNA			YER088C			
-chrVII-29	chrVII	959533	959599	+	324.5	0.637	NA	NA	-338	YGR234W_mRNA	YGR234W	YGR234W_mRNA			YGR234W			
-chrIV-27	chrIV	368691	368757	+	324.5	0.651	NA	NA	-513	YDL048C_mRNA	YDL048C	YDL048C_mRNA			YDL048C			
-chrVII-32	chrVII	785874	785940	+	324.5	0.617	NA	NA	-470	YGR146C-A_mRNA	YGR146C-A	YGR146C-A_mRNA			YGR146C-A			
-chrXI-16	chrXI	260670	260736	+	321.9	0.715	NA	NA	-429	YKL096W_mRNA	YKL096W	YKL096W_mRNA			YKL096W			
-chrXIV-15	chrXIV	440873	440939	+	321.9	0.542	NA	NA	13	YNL097C-B_mRNA	YNL097C-B	YNL097C-B_mRNA			YNL097C-B			
-chrIX-10	chrIX	142695	142761	+	321.9	0.701	NA	NA	-200	YIL116W_mRNA	YIL116W	YIL116W_mRNA			YIL116W			
-chrXVI-31	chrXVI	527237	527303	+	321.9	0.595	NA	NA	-277	YPL014W_mRNA	YPL014W	YPL014W_mRNA			YPL014W			
-chrX-12	chrX	663145	663211	+	321.9	0.649	NA	NA	-119	YJR127C_mRNA	YJR127C	YJR127C_mRNA			YJR127C			
-chrVII-14	chrVII	413397	413463	+	319.3	0.613	NA	NA	-672	YGL045W_mRNA	YGL045W	YGL045W_mRNA			YGL045W			
-chrVII-33	chrVII	809664	809730	+	319.3	0.650	NA	NA	-277	YGR161C_mRNA	YGR161C	YGR161C_mRNA			YGR161C			
-chrXI-17	chrXI	428951	429017	+	314.0	0.681	NA	NA	-318	YKL007W_mRNA	YKL007W	YKL007W_mRNA			YKL007W			
-chrVIII-8	chrVIII	296913	296979	+	314.0	0.700	NA	NA	-499	YHR096C_mRNA	YHR096C	YHR096C_mRNA			YHR096C			
-chrXIII-24	chrXIII	433642	433708	+	311.4	0.598	NA	NA	-1113	YMR083W_mRNA	YMR083W	YMR083W_mRNA			YMR083W			
-chrXV-30	chrXV	742462	742528	+	308.8	0.662	NA	NA	-415	YOR212W_mRNA	YOR212W	YOR212W_mRNA			YOR212W			
-chrXV-27	chrXV	671020	671086	+	308.8	0.778	NA	NA	-812	YOR178C_mRNA	YOR178C	YOR178C_mRNA			YOR178C			
-chrXIV-17	chrXIV	198338	198404	+	306.2	0.695	NA	NA	-428	YNL241C_mRNA	YNL241C	YNL241C_mRNA			YNL241C			
-chrXIII-21	chrXIII	388442	388508	+	306.2	0.656	NA	NA	-231	YMR056C_mRNA	YMR056C	YMR056C_mRNA			YMR056C			
-chrVII-28	chrVII	584191	584257	+	306.2	0.686	NA	NA	72	YGR045C_mRNA	YGR045C	YGR045C_mRNA			YGR045C			
-chrIV-24	chrIV	1080774	1080840	+	306.2	0.755	NA	NA	-608	YDR309C_mRNA	YDR309C	YDR309C_mRNA			YDR309C			
-chrXVI-35	chrXVI	641631	641697	+	306.2	0.673	NA	NA	-544	YPR035W_mRNA	YPR035W	YPR035W_mRNA			YPR035W			
-chrXVI-33	chrXVI	587168	587234	+	306.2	0.597	NA	NA	317	YPR014C_mRNA	YPR014C	YPR014C_mRNA			YPR014C			
-chrIX-11	chrIX	249468	249534	+	303.6	0.667	NA	NA	-490	YIL056W_mRNA	YIL056W	YIL056W_mRNA			YIL056W			
-chrXVI-36	chrXVI	645687	645753	+	303.6	0.570	NA	NA	-230	YPR036W-A_mRNA	YPR036W-A	YPR036W-A_mRNA			YPR036W-A			
-chrVII-31	chrVII	654143	654209	+	303.6	0.711	NA	NA	-458	YGR088W_mRNA	YGR088W	YGR088W_mRNA			YGR088W			
-chrXVI-37	chrXVI	75363	75429	+	303.6	0.719	NA	NA	-306	YPL250W-A_mRNA	YPL250W-A	YPL250W-A_mRNA			YPL250W-A			
-chrVII-24	chrVII	324010	324076	+	298.3	0.688	NA	NA	-1288	YGL096W_mRNA	YGL096W	YGL096W_mRNA			YGL096W			
-chrXV-34	chrXV	218724	218790	+	298.3	0.741	NA	NA	-454	YOL058W_mRNA	YOL058W	YOL058W_mRNA			YOL058W			
-chrXIII-23	chrXIII	287854	287920	+	298.3	0.678	NA	NA	-192	YMR011W_mRNA	YMR011W	YMR011W_mRNA			YMR011W			
-chrXVI-30	chrXVI	645264	645330	+	298.3	0.534	NA	NA	-653	YPR036W-A_mRNA	YPR036W-A	YPR036W-A_mRNA			YPR036W-A			
-chrIV-33	chrIV	546174	546240	+	295.7	0.601	NA	NA	-435	YDR044W_mRNA	YDR044W	YDR044W_mRNA			YDR044W			
-chrXI-18	chrXI	99952	100018	+	293.1	0.754	NA	NA	-686	YKL182W_mRNA	YKL182W	YKL182W_mRNA			YKL182W			
-chrIV-30	chrIV	62197	62263	+	293.1	0.731	NA	NA	219	YDL221W_mRNA	YDL221W	YDL221W_mRNA			YDL221W			
-chrVII-35	chrVII	428127	428193	+	293.1	0.808	NA	NA	-213	YGL037C_mRNA	YGL037C	YGL037C_mRNA			YGL037C			
-chrX-15	chrX	119991	120057	+	293.1	0.553	NA	NA	-425	YJL159W_mRNA	YJL159W	YJL159W_mRNA			YJL159W			
-chrIV-32	chrIV	1468719	1468785	+	290.5	0.580	NA	NA	-308	YDR508C_mRNA	YDR508C	YDR508C_mRNA			YDR508C			
-chrXIV-18	chrXIV	427050	427116	+	290.5	0.702	NA	NA	-329	YNL104C_mRNA	YNL104C	YNL104C_mRNA			YNL104C			
-chrVII-39	chrVII	206441	206507	+	287.9	0.719	NA	NA	-559	YGL158W_mRNA	YGL158W	YGL158W_mRNA			YGL158W			
-chrXV-40	chrXV	978454	978520	+	285.2	0.603	NA	NA	-418	YOR344C_mRNA	YOR344C	YOR344C_mRNA			YOR344C			
-chrIX-9	chrIX	139364	139430	+	285.2	0.584	NA	NA	-355	YIL118W_mRNA	YIL118W	YIL118W_mRNA			YIL118W			
-chrIV-38	chrIV	1011453	1011519	+	282.6	0.623	NA	NA	474	YDR274C_mRNA	YDR274C	YDR274C_mRNA			YDR274C			
-chrXIV-19	chrXIV	355438	355504	+	282.6	0.616	NA	NA	-429	YNL144C_mRNA	YNL144C	YNL144C_mRNA			YNL144C			
-chrVII-49	chrVII	780629	780695	+	282.6	0.707	NA	NA	263	YGR144W_mRNA	YGR144W	YGR144W_mRNA			YGR144W			
-chrIV-29	chrIV	636338	636404	+	282.6	0.589	NA	NA	156	YDR095C_mRNA	YDR095C	YDR095C_mRNA			YDR095C			
-chrXII-69	chrXII	187576	187642	+	280.0	0.614	NA	NA	-480	YLR023C_mRNA	YLR023C	YLR023C_mRNA			YLR023C			
-chrVII-43	chrVII	987036	987102	+	280.0	0.573	NA	NA	-980	YGR249W_mRNA	YGR249W	YGR249W_mRNA			YGR249W			
-chrXIV-20	chrXIV	276067	276133	+	277.4	0.647	NA	NA	-402	YNL192W_mRNA	YNL192W	YNL192W_mRNA			YNL192W			
-chrXI-19	chrXI	68041	68107	+	277.4	0.694	NA	NA	-608	YKL201C_mRNA	YKL201C	YKL201C_mRNA			YKL201C			
-chrXV-36	chrXV	216604	216670	+	277.4	0.684	NA	NA	-489	YOL059W_mRNA	YOL059W	YOL059W_mRNA			YOL059W			
-chrII-21	chrII	117010	117076	+	277.4	0.816	NA	NA	-214	YBL055C_mRNA	YBL055C	YBL055C_mRNA			YBL055C			
-chrXI-20	chrXI	99680	99746	+	277.4	0.629	NA	NA	-958	YKL182W_mRNA	YKL182W	YKL182W_mRNA			YKL182W			
-chrIV-28	chrIV	539361	539427	+	274.8	0.677	NA	NA	-409	YDR041W_mRNA	YDR041W	YDR041W_mRNA			YDR041W			
-chrIV-31	chrIV	722768	722834	+	274.8	0.620	NA	NA	-1504	YDR133C_mRNA	YDR133C	YDR133C_mRNA			YDR133C			
-chrXV-44	chrXV	825684	825750	+	272.2	0.587	NA	NA	215	YOR268C_mRNA	YOR268C	YOR268C_mRNA			YOR268C			
-chrXIII-33	chrXIII	362254	362320	+	272.2	0.596	NA	NA	340	YMR046C	YMR046C	YMR046C			YMR046C			NA
-chrIII-5	chrIII	123856	123922	+	272.2	0.595	NA	NA	-241	tP(AGG)C_tRNA	tP(AGG)C	tP(AGG)C_tRNA			tP(AGG)C			
-chrXV-48	chrXV	160940	161006	+	272.2	0.590	NA	NA	-379	YOL086C_mRNA	YOL086C	YOL086C_mRNA			YOL086C			
-chrXII-70	chrXII	322989	323055	+	269.5	0.670	NA	NA	-522	YLR092W_mRNA	YLR092W	YLR092W_mRNA			YLR092W			
-chrIV-40	chrIV	544322	544388	+	269.5	0.766	NA	NA	-986	YDR043C_mRNA	YDR043C	YDR043C_mRNA			YDR043C			
-chrV-17	chrV	284628	284694	+	266.9	0.572	NA	NA	-439	YER064C_mRNA	YER064C	YER064C_mRNA			YER064C			
-chrXV-47	chrXV	1059183	1059249	+	266.9	0.603	NA	NA	-315	YOR382W_mRNA	YOR382W	YOR382W_mRNA			YOR382W			
-chrXVI-40	chrXVI	641819	641885	+	264.3	0.610	NA	NA	-356	YPR035W_mRNA	YPR035W	YPR035W_mRNA			YPR035W			
-chrXIV-16	chrXIV	503098	503164	+	264.3	0.705	NA	NA	-593	YNL065W_mRNA	YNL065W	YNL065W_mRNA			YNL065W			
-chrXII-72	chrXII	660327	660393	+	264.3	0.543	NA	NA	-356	YLR258W_mRNA	YLR258W	YLR258W_mRNA			YLR258W			
-chrXIII-35	chrXIII	589728	589794	+	264.3	0.654	NA	NA	-211	YMR164C_mRNA	YMR164C	YMR164C_mRNA			YMR164C			
-chrI-6	chrI	68295	68361	+	261.7	0.569	NA	NA	-808	YAL040C_mRNA	YAL040C	YAL040C_mRNA			YAL040C			
-chrII-25	chrII	221334	221400	+	261.7	0.794	NA	NA	37	YBL005W-B	YBL005W-B	YBL005W-B			YBL005W-B			NA
-chrVII-45	chrVII	620086	620152	+	261.7	0.739	NA	NA	-261	YGR065C_mRNA	YGR065C	YGR065C_mRNA			YGR065C			
-chrII-26	chrII	195934	196000	+	261.7	0.592	NA	NA	-1527	tI(AAU)B_tRNA	tI(AAU)B	tI(AAU)B_tRNA			tI(AAU)B			
-chrXI-23	chrXI	2873	2939	+	261.7	0.769	NA	NA	517	YKL223W_mRNA	YKL223W	YKL223W_mRNA			YKL223W			
-chrV-19	chrV	268422	268488	+	261.7	0.605	NA	NA	-342	YER056C_mRNA	YER056C	YER056C_mRNA			YER056C			
-chrX-16	chrX	360705	360771	+	256.4	0.640	NA	NA	-511	YJL042W_mRNA	YJL042W	YJL042W_mRNA			YJL042W			
-chrII-22	chrII	555448	555514	+	256.4	0.597	NA	NA	-1068	YBR158W_mRNA	YBR158W	YBR158W_mRNA			YBR158W			
-chrXV-46	chrXV	391497	391563	+	256.4	0.652	NA	NA	-455	YOR032C_mRNA	YOR032C	YOR032C_mRNA			YOR032C			
-chrVIII-13	chrVIII	48306	48372	+	253.8	0.669	NA	NA	-371	YHL029C_mRNA	YHL029C	YHL029C_mRNA			YHL029C			
-chrXIII-39	chrXIII	653023	653089	+	253.8	0.623	NA	NA	80	YMR194C-A_mRNA	YMR194C-A	YMR194C-A_mRNA			YMR194C-A			
-chrII-29	chrII	477124	477190	+	251.2	0.662	NA	NA	-514	YBR118W_mRNA	YBR118W	YBR118W_mRNA			YBR118W			
-chrIV-41	chrIV	591884	591950	+	251.2	0.634	NA	NA	-522	YDR073W_mRNA	YDR073W	YDR073W_mRNA			YDR073W			
-chrI-8	chrI	68600	68666	+	251.2	0.596	NA	NA	892	YAL039C_mRNA	YAL039C	YAL039C_mRNA			YAL039C			
-chrXIII-32	chrXIII	653531	653597	+	248.6	0.553	NA	NA	-428	YMR194C-A_mRNA	YMR194C-A	YMR194C-A_mRNA			YMR194C-A			
-chrIV-43	chrIV	1490402	1490468	+	248.6	0.622	NA	NA	-161	YDR525W-A_mRNA	YDR525W-A	YDR525W-A_mRNA			YDR525W-A			
-chrXIV-22	chrXIV	662503	662569	+	248.6	0.745	NA	NA	-377	YNR017W_mRNA	YNR017W	YNR017W_mRNA			YNR017W			
-chrII-31	chrII	476748	476814	+	248.6	0.692	NA	NA	-344	YBR117C_mRNA	YBR117C	YBR117C_mRNA			YBR117C			
-chrXI-24	chrXI	463688	463754	+	246.0	0.743	NA	NA	-238	YKR013W_mRNA	YKR013W	YKR013W_mRNA			YKR013W			
-chrX-18	chrX	123584	123650	+	246.0	0.667	NA	NA	-669	YJL158C_mRNA	YJL158C	YJL158C_mRNA			YJL158C			
-chrXII-77	chrXII	954604	954670	+	246.0	0.568	NA	NA	-40	YLR415C_mRNA	YLR415C	YLR415C_mRNA			YLR415C			
-chrII-19	chrII	165085	165151	+	243.4	0.567	NA	NA	-346	YBL029C-A_mRNA	YBL029C-A	YBL029C-A_mRNA			YBL029C-A			
-chrXV-45	chrXV	1039472	1039538	+	243.4	0.593	NA	NA	-335	YOR374W_mRNA	YOR374W	YOR374W_mRNA			YOR374W			
-chrIV-42	chrIV	909633	909699	+	243.4	0.605	NA	NA	-388	YDR222W_mRNA	YDR222W	YDR222W_mRNA			YDR222W			
-chrVII-46	chrVII	557735	557801	+	243.4	0.706	NA	NA	203	YGR035W-A_mRNA	YGR035W-A	YGR035W-A_mRNA			YGR035W-A			
-chrXVI-41	chrXVI	828915	828981	+	240.7	0.651	NA	NA	-808	YPR148C_mRNA	YPR148C	YPR148C_mRNA			YPR148C			
-chrXVI-43	chrXVI	453749	453815	+	240.7	0.560	NA	NA	-47	YPL056C_mRNA	YPL056C	YPL056C_mRNA			YPL056C			
-chrIII-8	chrIII	163607	163673	+	238.1	0.609	NA	NA	216	YCR025C_mRNA	YCR025C	YCR025C_mRNA			YCR025C			
-chrV-28	chrV	222394	222460	+	238.1	0.607	NA	NA	-212	YER035W_mRNA	YER035W	YER035W_mRNA			YER035W			
-chrXI-26	chrXI	258609	258675	+	235.5	0.640	NA	NA	271	YKL097C_mRNA	YKL097C	YKL097C_mRNA			YKL097C			
-chrXIII-43	chrXIII	362062	362128	+	232.9	0.593	NA	NA	532	YMR046C	YMR046C	YMR046C			YMR046C			NA
-chrIV-55	chrIV	1420927	1420993	+	232.9	0.686	NA	NA	-122	YDR482C_mRNA	YDR482C	YDR482C_mRNA			YDR482C			
-chrIV-44	chrIV	357369	357435	+	230.3	0.601	NA	NA	-643	YDL055C_mRNA	YDL055C	YDL055C_mRNA			YDL055C			
-chrXIII-37	chrXIII	271730	271796	+	227.7	0.630	NA	NA	-186	YMR001C-A_mRNA	YMR001C-A	YMR001C-A_mRNA			YMR001C-A			
-chrII-33	chrII	221628	221694	+	227.7	0.585	NA	NA	331	YBL005W-B	YBL005W-B	YBL005W-B			YBL005W-B			NA
-chrIII-9	chrIII	163461	163527	+	227.7	0.671	NA	NA	362	YCR025C_mRNA	YCR025C	YCR025C_mRNA			YCR025C			
-chrIV-63	chrIV	1087122	1087188	+	219.8	0.884	NA	NA	-426	YDR312W_mRNA	YDR312W	YDR312W_mRNA			YDR312W			
-chrXIII-44	chrXIII	653741	653807	+	219.8	0.589	NA	NA	-260	YMR195W_mRNA	YMR195W	YMR195W_mRNA			YMR195W			
-chrVII-57	chrVII	968942	969008	+	217.2	0.628	NA	NA	-288	YGR238C_mRNA	YGR238C	YGR238C_mRNA			YGR238C			
-chrXIII-41	chrXIII	852264	852330	+	214.6	0.637	NA	NA	-333	YMR291W_mRNA	YMR291W	YMR291W_mRNA			YMR291W			
-chrIII-11	chrIII	137337	137403	+	214.6	0.649	NA	NA	-376	YCR012W_mRNA	YCR012W	YCR012W_mRNA			YCR012W			
-chrXII-86	chrXII	728344	728410	+	214.6	0.681	NA	NA	-374	YLR299C-A_mRNA	YLR299C-A	YLR299C-A_mRNA			YLR299C-A			
-chrV-20	chrV	141206	141272	+	214.6	0.622	NA	NA	-421	YEL008C-A_mRNA	YEL008C-A	YEL008C-A_mRNA			YEL008C-A			
-chrIX-22	chrIX	139187	139253	+	214.6	0.573	NA	NA	-532	YIL118W_mRNA	YIL118W	YIL118W_mRNA			YIL118W			
-chrIV-59	chrIV	1213736	1213802	+	214.6	0.750	NA	NA	-135	YDR368W_mRNA	YDR368W	YDR368W_mRNA			YDR368W			
-chrVIII-20	chrVIII	390074	390140	+	214.6	0.754	NA	NA	-193	YHR146W_mRNA	YHR146W	YHR146W_mRNA			YHR146W			
-chrXIII-48	chrXIII	434337	434403	+	209.3	0.543	NA	NA	-418	YMR083W_mRNA	YMR083W	YMR083W_mRNA			YMR083W			
-chrXII-97	chrXII	921637	921703	+	206.7	0.667	NA	NA	-74	YLR399C_mRNA	YLR399C	YLR399C_mRNA			YLR399C			
-chrVII-63	chrVII	856933	856999	+	206.7	0.717	NA	NA	525	tL(CAA)G3_tRNA	tL(CAA)G3	tL(CAA)G3_tRNA			tL(CAA)G3			
-chrX-24	chrX	337790	337856	+	206.7	0.610	NA	NA	180	YJL052C-A_mRNA	YJL052C-A	YJL052C-A_mRNA			YJL052C-A			
-chrV-36	chrV	311589	311655	+	206.7	0.645	NA	NA	-423	YER075C_mRNA	YER075C	YER075C_mRNA			YER075C			
-chrVII-58	chrVII	271503	271569	+	204.1	0.676	NA	NA	539	YGL126W_mRNA	YGL126W	YGL126W_mRNA			YGL126W			
-chrXII-103	chrXII	710566	710632	+	201.5	0.661	NA	NA	-463	YLR286C_mRNA	YLR286C	YLR286C_mRNA			YLR286C			
-chrX-28	chrX	639769	639835	+	201.5	0.617	NA	NA	-140	YJR115W_mRNA	YJR115W	YJR115W_mRNA			YJR115W			
-chrX-23	chrX	455200	455266	+	201.5	0.586	NA	NA	-552	YJR009C_mRNA	YJR009C	YJR009C_mRNA			YJR009C			
-chrXIII-52	chrXIII	349883	349949	+	198.9	0.683	NA	NA	-394	YMR039C_mRNA	YMR039C	YMR039C_mRNA			YMR039C			
-chrVI-11	chrVI	95235	95301	+	198.9	0.641	NA	NA	-258	YFL022C_mRNA	YFL022C	YFL022C_mRNA			YFL022C			
-chrX-25	chrX	454966	455032	+	198.9	0.652	NA	NA	-318	YJR009C_mRNA	YJR009C	YJR009C_mRNA			YJR009C			
-chrX-30	chrX	360945	361011	+	196.3	0.674	NA	NA	-271	YJL042W_mRNA	YJL042W	YJL042W_mRNA			YJL042W			
-chrIII-12	chrIII	85421	85487	+	193.6	0.726	NA	NA	352	YCL019W	YCL019W	YCL019W			YCL019W			NA
-chrXV-61	chrXV	430053	430119	+	193.6	0.903	NA	NA	-229	YOR054C_mRNA	YOR054C	YOR054C_mRNA			YOR054C			
-chrX-33	chrX	224130	224196	+	193.6	0.691	NA	NA	-892	YJL105W_mRNA	YJL105W	YJL105W_mRNA			YJL105W			
-chrXV-77	chrXV	837367	837433	+	191.0	0.642	NA	NA	-274	YOR274W_mRNA	YOR274W	YOR274W_mRNA			YOR274W			
-chrIV-85	chrIV	927123	927189	+	188.4	0.743	NA	NA	-246	YDR231C_mRNA	YDR231C	YDR231C_mRNA			YDR231C			
-chrVII-76	chrVII	371448	371514	+	188.4	0.667	NA	NA	-119	YGL072C_mRNA	YGL072C	YGL072C_mRNA			YGL072C			
-chrIV-69	chrIV	504905	504971	+	185.8	0.848	NA	NA	-243	YDR032C_mRNA	YDR032C	YDR032C_mRNA			YDR032C			
-chrXV-81	chrXV	1055156	1055222	+	185.8	0.656	NA	NA	-356	YOR381W_mRNA	YOR381W	YOR381W_mRNA			YOR381W			
-chrXV-78	chrXV	109283	109349	+	180.6	0.707	NA	NA	140	YOL110W_mRNA	YOL110W	YOL110W_mRNA			YOL110W			
-chrXVI-60	chrXVI	189051	189117	+	177.9	0.514	NA	NA	-70	YPL189W_mRNA	YPL189W	YPL189W_mRNA			YPL189W			
-chrXIII-56	chrXIII	759033	759099	+	177.9	0.612	NA	NA	-235	YMR244C-A_mRNA	YMR244C-A	YMR244C-A_mRNA			YMR244C-A			
-chrX-39	chrX	160357	160423	+	172.7	0.735	NA	NA	-229	YJL133W_mRNA	YJL133W	YJL133W_mRNA			YJL133W			
-chrII-48	chrII	378900	378966	+	172.7	0.556	NA	NA	-500	YBR069C_mRNA	YBR069C	YBR069C_mRNA			YBR069C			
-chrX-26	chrX	639611	639677	+	167.5	0.576	NA	NA	-298	YJR115W_mRNA	YJR115W	YJR115W_mRNA			YJR115W			
-chrX-43	chrX	663318	663384	+	167.5	0.656	NA	NA	-292	YJR127C_mRNA	YJR127C	YJR127C_mRNA			YJR127C			
-chrXII-121	chrXII	875194	875260	+	164.9	0.810	NA	NA	-149	tK(UUU)L_tRNA	tK(UUU)L	tK(UUU)L_tRNA			tK(UUU)L			
-chrXII-98	chrXII	796422	796488	+	164.9	0.707	NA	NA	-556	YLR333C_mRNA	YLR333C	YLR333C_mRNA			YLR333C			
-chrVII-86	chrVII	733228	733294	+	159.6	0.562	NA	NA	-151	YGR121W-A_mRNA	YGR121W-A	YGR121W-A_mRNA			YGR121W-A			
-chrX-51	chrX	392024	392090	+	159.6	0.767	NA	NA	192	YJL027C_mRNA	YJL027C	YJL027C_mRNA			YJL027C			
-chrX-50	chrX	391521	391587	+	159.6	0.741	NA	NA	243	YJL028W_mRNA	YJL028W	YJL028W_mRNA			YJL028W			
-chrXVI-79	chrXVI	67110	67176	+	159.6	0.733	NA	NA	-529	YPL256C_mRNA	YPL256C	YPL256C_mRNA			YPL256C			
-chrVII-94	chrVII	959153	959219	+	157.0	0.615	NA	NA	-718	YGR234W_mRNA	YGR234W	YGR234W_mRNA			YGR234W			
-chrV-58	chrV	311917	311983	+	151.8	0.744	NA	NA	145	tA(UGC)E_tRNA	tA(UGC)E	tA(UGC)E_tRNA			tA(UGC)E			
-chrII-64	chrII	731457	731523	+	149.2	0.617	NA	NA	1103	YBR259W_mRNA	YBR259W	YBR259W_mRNA			YBR259W			
-chrV-62	chrV	483170	483236	+	146.5	0.822	NA	NA	-355	YER155C_mRNA	YER155C	YER155C_mRNA			YER155C			
-chrVI-18	chrVI	225189	225255	+	146.5	0.619	NA	NA	-453	YFR033C_mRNA	YFR033C	YFR033C_mRNA			YFR033C			
-chrXIV-59	chrXIV	427482	427548	+	143.9	0.734	NA	NA	-220	YNL103W_mRNA	YNL103W	YNL103W_mRNA			YNL103W			
-chrIII-23	chrIII	205499	205565	+	143.9	0.871	NA	NA	-135	YCR042C_mRNA	YCR042C	YCR042C_mRNA			YCR042C			
-chrII-72	chrII	452138	452204	+	141.3	0.616	NA	NA	-202	YBR105C_mRNA	YBR105C	YBR105C_mRNA			YBR105C			
-chrII-68	chrII	392609	392675	+	136.1	0.645	NA	NA	-349	YBR077C_mRNA	YBR077C	YBR077C_mRNA			YBR077C			
-chrV-65	chrV	474538	474604	+	136.1	0.787	NA	NA	234	YER153C_mRNA	YER153C	YER153C_mRNA			YER153C			
-chrVII-115	chrVII	271913	271979	+	130.8	0.613	NA	NA	-574	YGL125W_mRNA	YGL125W	YGL125W_mRNA			YGL125W			

scripts/data/reprocessed_mahendrawada_results/peaks/ACA1xstandard/A/ACA1xstandard_A_peaks.bed

@@ -1,399 +0,0 @@
-# HOMER Peaks
-# Peak finding parameters:
-# tag directory = results/tag_dirs/ACA1xstandard/A
-#
-# total peaks = 362
-# peak size = 67
-# peaks found using tags on both strands
-# minimum distance between peaks = 134
-# fragment length = 64
-# genome size = 12156904
-# Total tags = 1910704.0
-# Total tags in peaks = 28733.0
-# Approximate IP efficiency = 1.50%
-# tags per bp = 0.136575
-# expected tags per peak = 9.151
-# maximum tags considered per bp = 15.0
-# effective number of tags used for normalization = 10000000.0
-# Peaks have been centered at maximum tag pile-up
-# FDR rate threshold = 0.001000000
-# FDR effective poisson threshold = 3.925818e-06
-# FDR tag threshold = 26.0
-# number of putative peaks = 1496
-#
-# input tag directory = checseq_promoter_enrichment_slurm_pipeline/control_data/from_correspondance/tag_dir
-# Fold over input required = 10.00
-# Poisson p-value over input required = 1.00e-04
-# Putative peaks filtered by input = 1122
-#
-# size of region used for local filtering = 10000
-# Fold over local region required = 6.00
-# Poisson p-value over local region required = 1.00e-04
-# Putative peaks filtered by local signal = 12
-#
-# cmd = findPeaks results/tag_dirs/ACA1xstandard/A -style factor -i checseq_promoter_enrichment_slurm_pipeline/control_data/from_correspondance/tag_dir -o auto -C 0 -L 6 -F 10
-#
-# Column Headers:
-#PeakID	chr	start	end	strand	Normalized Tag Count	focus ratio	findPeaks Score	Total Tags	Control Tags (normalized to IP Experiment)	Fold Change vs Control	p-value vs Control	Fold Change vs Local	p-value vs Local
-chrVI	31320	31387	chrVI-1	2384	+
-chrXVI	678996	679063	chrXVI-1	2094	+
-chrX	173266	173333	chrX-2	1460	+
-chrXIV	652041	652108	chrXIV-1	1377	+
-chrXIII	540613	540680	chrXIII-1	1361	+
-chrXV	908697	908764	chrXV-1	1311	+
-chrIX	386565	386632	chrIX-2	1298	+
-chrVII	483650	483717	chrVII-1	1274	+
-chrXIII	306267	306334	chrXIII-2	1259	+
-chrXI	231063	231130	chrXI-1	1256	+
-chrXV	1084684	1084751	chrXV-3	1248	+
-chrXV	27994	28061	chrXV-2	1165	+
-chrX	703663	703730	chrX-3	1149	+
-chrXIII	306561	306628	chrXIII-4	1133	+
-chrXIV	6500	6567	chrXIV-2	1110	+
-chrXIII	540368	540435	chrXIII-3	1055	+
-chrXIII	5437	5504	chrXIII-5	934	+
-chrVII	1084429	1084496	chrVII-3	908	+
-chrIV	1525551	1525618	chrIV-3	900	+
-chrXVI	6425	6492	chrXVI-2	895	+
-chrIV	976731	976798	chrIV-2	879	+
-chrXIV	301929	301996	chrXIV-3	871	+
-chrXII	368373	368440	chrXII-47	861	+
-chrXII	5517	5584	chrXII-48	856	+
-chrXVI	503050	503117	chrXVI-6	835	+
-chrVII	208763	208830	chrVII-4	822	+
-chrXIV	559593	559660	chrXIV-5	806	+
-chrVII	884106	884173	chrVII-5	801	+
-chrXIII	798025	798092	chrXIII-6	798	+
-chrXII	11080	11147	chrXII-52	762	+
-chrXIV	301272	301339	chrXIV-4	730	+
-chrXV	232201	232268	chrXV-4	725	+
-chrV	85040	85107	chrV-1	717	+
-chrX	68992	69059	chrX-4	704	+
-chrIV	1345407	1345474	chrIV-4	696	+
-chrVII	384909	384976	chrVII-2	696	+
-chrI	29878	29945	chrI-1	694	+
-chrXVI	214919	214986	chrXVI-3	683	+
-chrII	5693	5760	chrII-3	678	+
-chrXI	356225	356292	chrXI-2	673	+
-chrXII	5665	5732	chrXII-53	673	+
-chrXVI	432055	432122	chrXVI-5	662	+
-chrXVI	431918	431985	chrXVI-4	639	+
-chrXI	518245	518312	chrXI-3	633	+
-chrIX	22345	22412	chrIX-3	623	+
-chrXII	1071645	1071712	chrXII-51	620	+
-chrVIII	557051	557118	chrVIII-1	612	+
-chrXI	356091	356158	chrXI-4	591	+
-chrVII	987500	987567	chrVII-6	589	+
-chrXIII	557205	557272	chrXIII-8	584	+
-chrXIV	739302	739369	chrXIV-6	578	+
-chrXIV	441080	441147	chrXIV-7	576	+
-chrIV	976519	976586	chrIV-5	573	+
-chrVII	483209	483276	chrVII-8	563	+
-chrXIII	510993	511060	chrXIII-7	557	+
-chrVII	809905	809972	chrVII-7	552	+
-chrIX	254629	254696	chrIX-5	552	+
-chrIV	132905	132972	chrIV-6	547	+
-chrV	77687	77754	chrV-3	542	+
-chrIV	538966	539033	chrIV-8	539	+
-chrVII	23344	23411	chrVII-9	539	+
-chrVI	4532	4599	chrVI-2	537	+
-chrIV	593510	593577	chrIV-7	534	+
-chrV	570324	570391	chrV-2	534	+
-chrIX	386814	386881	chrIX-6	516	+
-chrIII	122524	122591	chrIII-1	510	+
-chrVII	483398	483465	chrVII-10	510	+
-chrII	375935	376002	chrII-2	508	+
-chrIX	254480	254547	chrIX-4	508	+
-chrV	85345	85412	chrV-4	500	+
-chrXV	904240	904307	chrXV-6	500	+
-chrV	268599	268666	chrV-5	497	+
-chrXI	147019	147086	chrXI-7	495	+
-chrXIII	287658	287725	chrXIII-10	495	+
-chrX	525943	526010	chrX-5	492	+
-chrXI	518906	518973	chrXI-6	492	+
-chrXV	988090	988157	chrXV-5	487	+
-chrXVI	340707	340774	chrXVI-7	487	+
-chrXIV	281787	281854	chrXIV-8	479	+
-chrXV	978847	978914	chrXV-7	479	+
-chrVII	592719	592786	chrVII-11	476	+
-chrVII	609884	609951	chrVII-12	476	+
-chrXI	355640	355707	chrXI-5	476	+
-chrII	371053	371120	chrII-1	474	+
-chrV	225640	225707	chrV-6	474	+
-chrVIII	122464	122531	chrVIII-2	471	+
-chrXII	370977	371044	chrXII-54	471	+
-chrXIII	302793	302860	chrXIII-11	471	+
-chrX	294504	294571	chrX-7	466	+
-chrV	123289	123356	chrV-7	463	+
-chrXIII	347165	347232	chrXIII-9	463	+
-chrXV	909073	909140	chrXV-8	463	+
-chrXV	384968	385035	chrXV-11	461	+
-chrXVI	40631	40698	chrXVI-10	458	+
-chrXI	355906	355973	chrXI-8	453	+
-chrXIII	287276	287343	chrXIII-13	453	+
-chrXVI	527020	527087	chrXVI-9	453	+
-chrXIII	388270	388337	chrXIII-14	450	+
-chrXVI	40423	40490	chrXVI-17	445	+
-chrXVI	465717	465784	chrXVI-11	445	+
-chrVII	484123	484190	chrVII-13	442	+
-chrII	466384	466451	chrII-5	437	+
-chrXI	514582	514649	chrXI-9	437	+
-chrIV	159389	159456	chrIV-9	434	+
-chrXV	988531	988598	chrXV-10	434	+
-chrII	419699	419766	chrII-4	429	+
-chrXVI	193128	193195	chrXVI-12	429	+
-chrXVI	739664	739731	chrXVI-13	429	+
-chrIV	369147	369214	chrIV-12	427	+
-chrIV	387056	387123	chrIV-11	427	+
-chrXV	520652	520719	chrXV-12	427	+
-chrXVI	840714	840781	chrXVI-14	427	+
-chrV	6295	6362	chrV-8	424	+
-chrXI	230762	230829	chrXI-10	424	+
-chrXIII	915258	915325	chrXIII-12	424	+
-chrXII	809315	809382	chrXII-55	421	+
-chrXII	1065202	1065269	chrXII-56	421	+
-chrXVI	502499	502566	chrXVI-15	421	+
-chrII	419890	419957	chrII-6	416	+
-chrXV	770360	770427	chrXV-13	416	+
-chrII	140550	140617	chrII-8	414	+
-chrV	491224	491291	chrV-9	414	+
-chrXIV	662197	662264	chrXIV-9	414	+
-chrXVI	829291	829358	chrXVI-8	414	+
-chrIV	410933	411000	chrIV-13	411	+
-chrVII	20422	20489	chrVII-15	408	+
-chrXIII	282986	283053	chrXIII-15	408	+
-chrXV	55236	55303	chrXV-16	406	+
-chrXV	882194	882261	chrXV-17	406	+
-chrIV	1014040	1014107	chrIV-10	403	+
-chrXV	43514	43581	chrXV-18	400	+
-chrXV	285782	285849	chrXV-19	400	+
-chrVII	404860	404927	chrVII-16	398	+
-chrXI	231651	231718	chrXI-11	398	+
-chrXII	950813	950880	chrXII-57	398	+
-chrXVI	38700	38767	chrXVI-23	398	+
-chrIX	21929	21996	chrIX-7	395	+
-chrXI	258889	258956	chrXI-12	395	+
-chrXI	518708	518775	chrXI-13	395	+
-chrXIII	906058	906125	chrXIII-18	395	+
-chrIV	507464	507531	chrIV-17	387	+
-chrV	284832	284899	chrV-10	385	+
-chrVII	23621	23688	chrVII-17	385	+
-chrXII	370432	370499	chrXII-59	385	+
-chrII	555827	555894	chrII-7	382	+
-chrIV	543803	543870	chrIV-15	382	+
-chrIV	721744	721811	chrIV-14	382	+
-chrX	220366	220433	chrX-8	382	+
-chrXIII	653211	653278	chrXIII-19	382	+
-chrII	5496	5563	chrII-16	379	+
-chrIV	1161896	1161963	chrIV-19	379	+
-chrXVI	455214	455281	chrXVI-19	379	+
-chrII	136041	136108	chrII-9	377	+
-chrIII	122813	122880	chrIII-2	377	+
-chrXII	954963	955030	chrXII-58	377	+
-chrXV	109598	109665	chrXV-22	377	+
-chrV	69358	69425	chrV-11	374	+
-chrXII	636317	636384	chrXII-61	374	+
-chrIV	599930	599997	chrIV-16	372	+
-chrIV	1469011	1469078	chrIV-20	372	+
-chrVII	1083531	1083598	chrVII-20	372	+
-chrXII	416929	416996	chrXII-60	372	+
-chrV	84774	84841	chrV-13	369	+
-chrXI	615003	615070	chrXI-14	369	+
-chrII	419434	419501	chrII-13	366	+
-chrVII	592496	592563	chrVII-22	366	+
-chrXII	10851	10918	chrXII-66	366	+
-chrXIII	119274	119341	chrXIII-20	366	+
-chrXVI	551936	552003	chrXVI-21	366	+
-chrIV	1011741	1011808	chrIV-21	364	+
-chrXV	638826	638893	chrXV-23	364	+
-chrII	341869	341936	chrII-17	361	+
-chrX	195661	195728	chrX-10	361	+
-chrXIV	6267	6334	chrXIV-12	361	+
-chrII	561117	561184	chrII-11	359	+
-chrVIII	462175	462242	chrVIII-3	359	+
-chrVIII	521968	522035	chrVIII-4	359	+
-chrXIII	472933	473000	chrXIII-16	359	+
-chrVII	1000177	1000244	chrVII-26	356	+
-chrXII	677721	677788	chrXII-63	356	+
-chrII	554773	554840	chrII-15	353	+
-chrIV	680223	680290	chrIV-22	353	+
-chrXI	382076	382143	chrXI-15	353	+
-chrXIV	576245	576312	chrXIV-11	353	+
-chrXVI	280208	280275	chrXVI-25	353	+
-chrXVI	425617	425684	chrXVI-18	353	+
-chrXV	109765	109832	chrXV-21	351	+
-chrIV	551027	551094	chrIV-18	348	+
-chrVII	599191	599258	chrVII-21	343	+
-chrIX	388515	388582	chrIX-8	343	+
-chrXVI	520494	520561	chrXVI-27	343	+
-chrXVI	296836	296903	chrXVI-26	340	+
-chrII	555957	556024	chrII-12	338	+
-chrX	268428	268495	chrX-11	338	+
-chrXVI	297298	297365	chrXVI-28	338	+
-chrIV	636197	636264	chrIV-23	335	+
-chrXV	1043239	1043306	chrXV-31	335	+
-chrIII	1018	1085	chrIII-4	332	+
-chrXIII	271960	272027	chrXIII-22	332	+
-chrIV	722466	722533	chrIV-26	330	+
-chrIV	1016127	1016194	chrIV-25	327	+
-chrVI	176660	176727	chrVI-4	327	+
-chrVI	255557	255624	chrVI-5	327	+
-chrVII	371023	371090	chrVII-30	327	+
-chrXV	27555	27622	chrXV-29	327	+
-chrXV	882479	882546	chrXV-20	327	+
-chrIV	368690	368757	chrIV-27	325	+
-chrV	335520	335587	chrV-15	325	+
-chrVII	785873	785940	chrVII-32	325	+
-chrVII	959532	959599	chrVII-29	325	+
-chrIX	142694	142761	chrIX-10	322	+
-chrX	663144	663211	chrX-12	322	+
-chrXI	260669	260736	chrXI-16	322	+
-chrXIV	440872	440939	chrXIV-15	322	+
-chrXVI	527236	527303	chrXVI-31	322	+
-chrVII	413396	413463	chrVII-14	319	+
-chrVII	809663	809730	chrVII-33	319	+
-chrVIII	296912	296979	chrVIII-8	314	+
-chrXI	428950	429017	chrXI-17	314	+
-chrXIII	433641	433708	chrXIII-24	311	+
-chrXV	671019	671086	chrXV-27	309	+
-chrXV	742461	742528	chrXV-30	309	+
-chrIV	1080773	1080840	chrIV-24	306	+
-chrVII	584190	584257	chrVII-28	306	+
-chrXIII	388441	388508	chrXIII-21	306	+
-chrXIV	198337	198404	chrXIV-17	306	+
-chrXVI	587167	587234	chrXVI-33	306	+
-chrXVI	641630	641697	chrXVI-35	306	+
-chrVII	654142	654209	chrVII-31	304	+
-chrIX	249467	249534	chrIX-11	304	+
-chrXVI	75362	75429	chrXVI-37	304	+
-chrXVI	645686	645753	chrXVI-36	304	+
-chrVII	324009	324076	chrVII-24	298	+
-chrXIII	287853	287920	chrXIII-23	298	+
-chrXV	218723	218790	chrXV-34	298	+
-chrXVI	645263	645330	chrXVI-30	298	+
-chrIV	546173	546240	chrIV-33	296	+
-chrIV	62196	62263	chrIV-30	293	+
-chrVII	428126	428193	chrVII-35	293	+
-chrX	119990	120057	chrX-15	293	+
-chrXI	99951	100018	chrXI-18	293	+
-chrIV	1468718	1468785	chrIV-32	291	+
-chrXIV	427049	427116	chrXIV-18	291	+
-chrVII	206440	206507	chrVII-39	288	+
-chrIX	139363	139430	chrIX-9	285	+
-chrXV	978453	978520	chrXV-40	285	+
-chrIV	636337	636404	chrIV-29	283	+
-chrIV	1011452	1011519	chrIV-38	283	+
-chrVII	780628	780695	chrVII-49	283	+
-chrXIV	355437	355504	chrXIV-19	283	+
-chrVII	987035	987102	chrVII-43	280	+
-chrXII	187575	187642	chrXII-69	280	+
-chrII	117009	117076	chrII-21	277	+
-chrXI	68040	68107	chrXI-19	277	+
-chrXI	99679	99746	chrXI-20	277	+
-chrXIV	276066	276133	chrXIV-20	277	+
-chrXV	216603	216670	chrXV-36	277	+
-chrIV	539360	539427	chrIV-28	275	+
-chrIV	722767	722834	chrIV-31	275	+
-chrIII	123855	123922	chrIII-5	272	+
-chrXIII	362253	362320	chrXIII-33	272	+
-chrXV	160939	161006	chrXV-48	272	+
-chrXV	825683	825750	chrXV-44	272	+
-chrIV	544321	544388	chrIV-40	270	+
-chrXII	322988	323055	chrXII-70	270	+
-chrV	284627	284694	chrV-17	267	+
-chrXV	1059182	1059249	chrXV-47	267	+
-chrXII	660326	660393	chrXII-72	264	+
-chrXIII	589727	589794	chrXIII-35	264	+
-chrXIV	503097	503164	chrXIV-16	264	+
-chrXVI	641818	641885	chrXVI-40	264	+
-chrI	68294	68361	chrI-6	262	+
-chrII	195933	196000	chrII-26	262	+
-chrII	221333	221400	chrII-25	262	+
-chrV	268421	268488	chrV-19	262	+
-chrVII	620085	620152	chrVII-45	262	+
-chrXI	2872	2939	chrXI-23	262	+
-chrII	555447	555514	chrII-22	256	+
-chrX	360704	360771	chrX-16	256	+
-chrXV	391496	391563	chrXV-46	256	+
-chrVIII	48305	48372	chrVIII-13	254	+
-chrXIII	653022	653089	chrXIII-39	254	+
-chrI	68599	68666	chrI-8	251	+
-chrII	477123	477190	chrII-29	251	+
-chrIV	591883	591950	chrIV-41	251	+
-chrII	476747	476814	chrII-31	249	+
-chrIV	1490401	1490468	chrIV-43	249	+
-chrXIII	653530	653597	chrXIII-32	249	+
-chrXIV	662502	662569	chrXIV-22	249	+
-chrX	123583	123650	chrX-18	246	+
-chrXI	463687	463754	chrXI-24	246	+
-chrXII	954603	954670	chrXII-77	246	+
-chrII	165084	165151	chrII-19	243	+
-chrIV	909632	909699	chrIV-42	243	+
-chrVII	557734	557801	chrVII-46	243	+
-chrXV	1039471	1039538	chrXV-45	243	+
-chrXVI	453748	453815	chrXVI-43	241	+
-chrXVI	828914	828981	chrXVI-41	241	+
-chrIII	163606	163673	chrIII-8	238	+
-chrV	222393	222460	chrV-28	238	+
-chrXI	258608	258675	chrXI-26	236	+
-chrIV	1420926	1420993	chrIV-55	233	+
-chrXIII	362061	362128	chrXIII-43	233	+
-chrIV	357368	357435	chrIV-44	230	+
-chrII	221627	221694	chrII-33	228	+
-chrIII	163460	163527	chrIII-9	228	+
-chrXIII	271729	271796	chrXIII-37	228	+
-chrIV	1087121	1087188	chrIV-63	220	+
-chrXIII	653740	653807	chrXIII-44	220	+
-chrVII	968941	969008	chrVII-57	217	+
-chrIII	137336	137403	chrIII-11	215	+
-chrIV	1213735	1213802	chrIV-59	215	+
-chrV	141205	141272	chrV-20	215	+
-chrVIII	390073	390140	chrVIII-20	215	+
-chrIX	139186	139253	chrIX-22	215	+
-chrXII	728343	728410	chrXII-86	215	+
-chrXIII	852263	852330	chrXIII-41	215	+
-chrXIII	434336	434403	chrXIII-48	209	+
-chrV	311588	311655	chrV-36	207	+
-chrVII	856932	856999	chrVII-63	207	+
-chrX	337789	337856	chrX-24	207	+
-chrXII	921636	921703	chrXII-97	207	+
-chrVII	271502	271569	chrVII-58	204	+
-chrX	455199	455266	chrX-23	202	+
-chrX	639768	639835	chrX-28	202	+
-chrXII	710565	710632	chrXII-103	202	+
-chrVI	95234	95301	chrVI-11	199	+
-chrX	454965	455032	chrX-25	199	+
-chrXIII	349882	349949	chrXIII-52	199	+
-chrX	360944	361011	chrX-30	196	+
-chrIII	85420	85487	chrIII-12	194	+
-chrX	224129	224196	chrX-33	194	+
-chrXV	430052	430119	chrXV-61	194	+
-chrXV	837366	837433	chrXV-77	191	+
-chrIV	927122	927189	chrIV-85	188	+
-chrVII	371447	371514	chrVII-76	188	+
-chrIV	504904	504971	chrIV-69	186	+
-chrXV	1055155	1055222	chrXV-81	186	+
-chrXV	109282	109349	chrXV-78	181	+
-chrXIII	759032	759099	chrXIII-56	178	+
-chrXVI	189050	189117	chrXVI-60	178	+
-chrII	378899	378966	chrII-48	173	+
-chrX	160356	160423	chrX-39	173	+
-chrX	639610	639677	chrX-26	168	+
-chrX	663317	663384	chrX-43	168	+
-chrXII	796421	796488	chrXII-98	165	+
-chrXII	875193	875260	chrXII-121	165	+
-chrVII	733227	733294	chrVII-86	160	+
-chrX	391520	391587	chrX-50	160	+
-chrX	392023	392090	chrX-51	160	+
-chrXVI	67109	67176	chrXVI-79	160	+
-chrVII	959152	959219	chrVII-94	157	+
-chrV	311916	311983	chrV-58	152	+
-chrII	731456	731523	chrII-64	149	+
-chrV	483169	483236	chrV-62	147	+
-chrVI	225188	225255	chrVI-18	147	+
-chrIII	205498	205565	chrIII-23	144	+
-chrXIV	427481	427548	chrXIV-59	144	+
-chrII	452137	452204	chrII-72	141	+
-chrII	392608	392675	chrII-68	136	+
-chrV	474537	474604	chrV-65	136	+
-chrVII	271912	271979	chrVII-115	131	+

scripts/data/reprocessed_mahendrawada_results/peaks/ACA1xstandard/A/ACA1xstandard_A_peaks.txt

@@ -1,399 +0,0 @@
-# HOMER Peaks
-# Peak finding parameters:
-# tag directory = results/tag_dirs/ACA1xstandard/A
-#
-# total peaks = 362
-# peak size = 67
-# peaks found using tags on both strands
-# minimum distance between peaks = 134
-# fragment length = 64
-# genome size = 12156904
-# Total tags = 1910704.0
-# Total tags in peaks = 28733.0
-# Approximate IP efficiency = 1.50%
-# tags per bp = 0.136575
-# expected tags per peak = 9.151
-# maximum tags considered per bp = 15.0
-# effective number of tags used for normalization = 10000000.0
-# Peaks have been centered at maximum tag pile-up
-# FDR rate threshold = 0.001000000
-# FDR effective poisson threshold = 3.925818e-06
-# FDR tag threshold = 26.0
-# number of putative peaks = 1496
-#
-# input tag directory = checseq_promoter_enrichment_slurm_pipeline/control_data/from_correspondance/tag_dir
-# Fold over input required = 10.00
-# Poisson p-value over input required = 1.00e-04
-# Putative peaks filtered by input = 1122
-#
-# size of region used for local filtering = 10000
-# Fold over local region required = 6.00
-# Poisson p-value over local region required = 1.00e-04
-# Putative peaks filtered by local signal = 12
-#
-# cmd = findPeaks results/tag_dirs/ACA1xstandard/A -style factor -i checseq_promoter_enrichment_slurm_pipeline/control_data/from_correspondance/tag_dir -o auto -C 0 -L 6 -F 10
-#
-# Column Headers:
-#PeakID	chr	start	end	strand	Normalized Tag Count	focus ratio	findPeaks Score	Total Tags	Control Tags (normalized to IP Experiment)	Fold Change vs Control	p-value vs Control	Fold Change vs Local	p-value vs Local
-chrVI-1	chrVI	31321	31387	+	2383.9	0.804	251.000000	455.5	6.8	66.50	0.00e+00	92.57	0.00e+00
-chrXVI-1	chrXVI	678997	679063	+	2093.5	0.695	334.000000	404.0	6.0	67.68	0.00e+00	51.95	0.00e+00
-chrX-2	chrX	173267	173333	+	1460.2	0.758	231.000000	279.0	6.0	46.74	0.00e+00	70.88	0.00e+00
-chrXIV-1	chrXIV	652042	652108	+	1376.5	0.753	233.500000	263.0	5.5	47.99	0.00e+00	84.21	0.00e+00
-chrXIII-1	chrXIII	540614	540680	+	1360.8	0.620	262.500000	260.0	5.5	47.45	0.00e+00	29.67	5.05e-276
-chrXV-1	chrXV	908698	908764	+	1311.0	0.641	233.000000	250.5	4.5	55.65	0.00e+00	19.40	2.57e-219
-chrIX-2	chrIX	386566	386632	+	1298.0	0.717	240.500000	248.0	3.5	70.40	0.00e+00	24.17	4.03e-242
-chrVII-1	chrVII	483651	483717	+	1274.4	0.672	233.500000	284.0	6.4	44.65	0.00e+00	18.79	2.49e-209
-chrXIII-2	chrXIII	306268	306334	+	1258.7	0.604	225.000000	240.5	3.5	68.27	0.00e+00	16.51	7.80e-195
-chrXI-1	chrXI	231064	231130	+	1256.1	0.643	237.000000	262.5	3.7	70.59	0.00e+00	25.08	6.90e-237
-chrXV-3	chrXV	1084685	1084751	+	1248.2	0.736	135.500000	238.5	6.6	36.38	4.75e-273	46.13	5.34e-297
-chrXV-2	chrXV	27995	28061	+	1164.5	0.746	211.000000	222.5	5.2	42.90	2.54e-270	41.28	1.05e-266
-chrX-3	chrX	703664	703730	+	1148.8	0.583	186.000000	219.5	4.5	48.76	1.31e-278	32.44	9.80e-240
-chrXIII-4	chrXIII	306562	306628	+	1133.1	0.566	177.000000	219.0	3.5	62.17	1.69e-301	14.84	1.28e-167
-chrXIV-2	chrXIV	6501	6567	+	1109.5	0.808	189.000000	212.0	6.7	31.86	8.76e-232	49.21	1.37e-255
-chrXIII-3	chrXIII	540369	540435	+	1054.6	0.551	199.000000	204.0	3.9	52.12	1.21e-265	21.85	2.90e-187
-chrXIII-5	chrXIII	5438	5504	+	934.2	0.710	159.500000	180.0	8.7	20.67	1.35e-164	42.32	1.10e-212
-chrVII-3	chrVII	1084430	1084496	+	908.0	0.728	148.500000	174.0	11.0	15.88	2.42e-140	34.15	1.40e-194
-chrIV-3	chrIV	1525552	1525618	+	900.2	0.633	137.000000	172.0	10.3	16.74	1.81e-142	45.62	1.53e-214
-chrXVI-2	chrXVI	6426	6492	+	895.0	0.799	176.500000	174.5	8.8	19.81	6.14e-156	36.74	1.25e-197
-chrIV-2	chrIV	976732	976798	+	879.3	0.708	155.000000	169.5	5.2	32.68	8.72e-187	26.75	8.74e-172
-chrXIV-3	chrXIV	301930	301996	+	871.4	0.593	162.000000	166.5	4.8	34.73	9.63e-188	19.56	5.76e-148
-chrXII-47	chrXII	368374	368440	+	860.9	0.677	170.000000	165.0	4.3	38.32	1.05e-193	18.20	1.74e-140
-chrXII-48	chrXII	5518	5584	+	855.7	0.791	135.500000	163.5	11.1	14.79	1.10e-126	46.52	1.42e-204
-chrXVI-6	chrXVI	503051	503117	+	834.8	0.689	112.000000	159.5	4.7	33.96	2.10e-178	24.75	2.48e-156
-chrVII-4	chrVII	208764	208830	+	821.7	0.732	140.000000	157.0	12.8	12.25	2.15e-110	40.03	2.66e-187
-chrXIV-5	chrXIV	559594	559660	+	806.0	0.749	130.500000	154.0	2.5	60.53	7.36e-211	33.18	1.45e-171
-chrVII-5	chrVII	884107	884173	+	800.8	0.700	137.500000	153.0	5.2	29.50	6.80e-163	39.14	3.93e-181
-chrXIII-6	chrXIII	798026	798092	+	798.1	0.786	145.500000	153.0	4.9	31.27	1.22e-166	46.52	1.30e-188
-chrXII-52	chrXII	11081	11147	+	761.5	0.812	117.000000	145.5	9.2	15.82	7.32e-117	30.88	4.68e-157
-chrXIV-4	chrXIV	301273	301339	+	730.1	0.703	145.500000	139.5	3.5	39.60	3.27e-165	16.09	4.68e-113
-chrXV-4	chrXV	232202	232268	+	724.9	0.651	121.000000	141.5	7.1	19.81	1.10e-126	36.80	9.42e-160
-chrV-1	chrV	85041	85107	+	717.0	0.598	138.000000	137.0	3.3	41.18	2.44e-165	18.80	2.17e-120
-chrX-4	chrX	68993	69059	+	703.9	0.745	150.500000	137.5	5.9	23.42	1.21e-132	58.14	4.55e-176
-chrIV-4	chrIV	1345408	1345474	+	696.1	0.723	131.500000	133.0	2.9	45.31	5.83e-166	59.39	2.69e-181
-chrVII-2	chrVII	384910	384976	+	696.1	0.714	149.000000	133.0	2.4	54.37	2.79e-176	35.62	2.04e-152
-chrI-1	chrI	29879	29945	+	693.5	0.642	136.500000	133.5	7.5	17.72	1.70e-113	23.31	9.35e-125
-chrXVI-3	chrXVI	214920	214986	+	683.0	0.631	138.500000	130.5	5.9	22.23	3.92e-123	23.45	3.18e-126
-chrII-3	chrII	5694	5760	+	677.8	0.695	96.000000	129.5	11.8	10.94	4.63e-85	32.00	7.61e-142
-chrXI-2	chrXI	356226	356292	+	672.5	0.663	136.500000	129.0	7.4	17.35	3.22e-109	15.24	1.98e-101
-chrXII-53	chrXII	5666	5732	+	672.5	0.715	112.000000	128.5	5.9	21.89	1.91e-120	33.99	5.17e-144
-chrXVI-5	chrXVI	432056	432122	+	662.1	0.517	128.000000	126.5	6.7	19.01	2.93e-111	21.74	3.00e-118
-chrXVI-4	chrXVI	431919	431985	+	638.5	0.629	129.500000	133.0	5.3	25.17	5.07e-133	20.17	3.49e-107
-chrXI-3	chrXI	518246	518312	+	633.3	0.770	114.000000	121.0	3.7	32.54	3.19e-134	14.73	1.68e-94
-chrIX-3	chrIX	22346	22412	+	622.8	0.571	136.500000	122.5	5.7	21.58	3.54e-114	23.15	4.40e-115
-chrXII-51	chrXII	1071646	1071712	+	620.2	0.674	120.000000	118.5	5.7	20.88	7.21e-109	30.71	7.28e-128
-chrVIII-1	chrVIII	557052	557118	+	612.3	0.659	110.500000	117.0	6.4	18.39	4.69e-102	33.58	2.10e-131
-chrXI-4	chrXI	356092	356158	+	591.4	0.584	113.000000	114.0	6.4	17.92	2.85e-98	13.03	2.21e-81
-chrVII-6	chrVII	987501	987567	+	588.8	0.555	113.000000	112.5	4.7	23.95	8.44e-110	19.12	1.49e-99
-chrXIII-8	chrXIII	557206	557272	+	583.6	0.648	111.500000	111.5	7.5	14.80	7.34e-87	23.56	4.42e-108
-chrXIV-6	chrXIV	739303	739369	+	578.3	0.601	110.500000	110.5	4.6	24.03	5.18e-108	27.94	6.45e-114
-chrXIV-7	chrXIV	441081	441147	+	575.7	0.699	106.000000	110.5	6.5	17.11	1.36e-92	26.51	9.86e-112
-chrIV-5	chrIV	976520	976586	+	573.1	0.620	116.000000	109.5	7.2	15.12	2.78e-86	15.36	2.96e-83
-chrVII-8	chrVII	483210	483276	+	562.6	0.588	110.000000	107.5	4.7	22.89	5.96e-103	7.89	2.61e-57
-chrXIII-7	chrXIII	510994	511060	+	557.4	0.566	118.000000	108.5	5.7	19.12	7.39e-96	23.07	2.39e-102
-chrVII-7	chrVII	809906	809972	+	552.2	0.660	110.500000	106.0	4.2	25.19	1.90e-106	19.54	3.48e-94
-chrIX-5	chrIX	254630	254696	+	552.2	0.624	106.500000	107.0	4.2	25.43	7.48e-108	21.86	1.99e-94
-chrIV-6	chrIV	132906	132972	+	546.9	0.596	108.000000	104.5	4.2	24.84	1.20e-103	24.39	6.39e-101
-chrV-3	chrV	77688	77754	+	541.7	0.707	103.500000	103.5	5.7	18.24	1.68e-89	39.39	1.21e-122
-chrIV-8	chrIV	538967	539033	+	539.1	0.590	103.500000	103.0	4.1	25.06	2.89e-103	14.31	1.57e-79
-chrVII-9	chrVII	23345	23411	+	539.1	0.662	101.500000	103.0	3.5	29.24	6.57e-110	14.54	1.25e-75
-chrVI-2	chrVI	4533	4599	+	536.5	0.737	108.500000	103.0	8.3	12.38	1.54e-73	34.26	1.87e-115
-chrIV-7	chrIV	593511	593577	+	533.8	0.710	105.500000	103.0	3.0	33.95	2.18e-116	19.66	5.11e-92
-chrV-2	chrV	570325	570391	+	533.8	0.748	104.000000	105.0	8.5	12.33	9.22e-75	21.78	2.83e-94
-chrIX-6	chrIX	386815	386881	+	515.5	0.598	101.000000	98.5	8.6	11.44	9.14e-67	8.81	9.33e-57
-chrIII-1	chrIII	122525	122591	+	510.3	0.707	101.000000	101.0	7.1	14.14	1.58e-77	12.81	1.71e-70
-chrVII-10	chrVII	483399	483465	+	510.3	0.685	101.500000	98.5	4.1	23.97	2.59e-96	7.12	2.37e-48
-chrII-2	chrII	375936	376002	+	507.7	0.666	98.000000	98.0	5.1	19.26	1.21e-87	10.18	7.91e-62
-chrIX-4	chrIX	254481	254547	+	507.7	0.676	106.500000	97.0	4.5	21.55	2.86e-91	20.18	1.21e-88
-chrV-4	chrV	85346	85412	+	499.8	0.585	102.500000	95.5	3.7	25.68	3.73e-96	12.79	5.33e-69
-chrXV-6	chrXV	904241	904307	+	499.8	0.651	101.000000	96.0	7.0	13.63	2.37e-72	7.75	6.45e-50
-chrV-5	chrV	268600	268666	+	497.2	0.706	96.500000	96.5	3.6	26.65	1.23e-98	19.57	1.18e-85
-chrXI-7	chrXI	147020	147086	+	494.6	0.809	93.500000	95.0	7.7	12.29	1.11e-67	33.98	4.44e-103
-chrXIII-10	chrXIII	287659	287725	+	494.6	0.624	97.500000	94.5	2.1	45.99	3.04e-118	12.17	1.97e-66
-chrX-5	chrX	525944	526010	+	492.0	0.588	96.000000	94.0	3.7	25.28	9.54e-95	28.82	6.62e-100
-chrXI-6	chrXI	518907	518973	+	492.0	0.624	94.000000	94.5	4.9	19.31	4.77e-84	10.97	5.81e-60
-chrXV-5	chrXV	988091	988157	+	486.7	0.646	101.500000	93.0	3.5	26.40	1.92e-95	10.62	6.42e-61
-chrXVI-7	chrXVI	340708	340774	+	486.7	0.640	99.500000	93.0	4.6	20.22	3.89e-85	22.33	5.93e-89
-chrXIV-8	chrXIV	281788	281854	+	478.9	0.789	94.000000	91.5	3.0	30.16	2.64e-98	40.49	1.31e-109
-chrXV-7	chrXV	978848	978914	+	478.9	0.589	99.000000	91.5	3.0	30.16	2.64e-98	13.72	9.71e-69
-chrVII-11	chrVII	592720	592786	+	476.3	0.654	96.000000	91.0	3.9	23.25	1.31e-88	13.80	9.80e-67
-chrVII-12	chrVII	609885	609951	+	476.3	0.667	92.000000	91.0	7.1	12.74	3.21e-66	24.73	5.68e-90
-chrXI-5	chrXI	355641	355707	+	476.3	0.583	102.500000	93.5	4.7	19.91	2.50e-84	10.56	2.00e-59
-chrII-1	chrII	371054	371120	+	473.6	0.680	100.500000	92.5	6.0	15.50	5.31e-74	11.87	9.08e-63
-chrV-6	chrV	225641	225707	+	473.6	0.832	93.500000	90.5	4.0	22.56	2.56e-86	28.46	4.84e-95
-chrVIII-2	chrVIII	122465	122531	+	471.0	0.647	91.500000	90.0	5.8	15.59	7.54e-73	19.71	1.70e-81
-chrXII-54	chrXII	370978	371044	+	471.0	0.637	90.500000	91.0	2.5	35.77	4.80e-105	9.56	1.70e-54
-chrXIII-11	chrXIII	302794	302860	+	471.0	0.652	95.000000	90.0	4.9	18.39	6.11e-79	6.11	4.69e-40
-chrX-7	chrX	294505	294571	+	465.8	0.627	90.500000	89.0	4.6	19.35	6.10e-80	19.58	2.30e-80
-chrV-7	chrV	123290	123356	+	463.2	0.564	89.500000	89.5	5.2	17.26	1.50e-75	24.69	9.74e-88
-chrXIII-9	chrXIII	347166	347232	+	463.2	0.763	99.500000	89.5	8.4	10.64	3.17e-58	26.47	2.77e-88
-chrXV-8	chrXV	909074	909140	+	463.2	0.676	93.000000	89.0	6.8	12.99	1.65e-65	6.51	4.10e-41
-chrXV-11	chrXV	384969	385035	+	460.6	0.558	88.000000	88.0	7.2	12.15	1.94e-62	18.16	9.30e-77
-chrXVI-10	chrXVI	40632	40698	+	457.9	0.584	91.000000	87.5	7.8	11.18	1.16e-58	12.65	6.05e-63
-chrXI-8	chrXI	355907	355973	+	452.7	0.564	93.500000	87.0	5.0	17.43	1.87e-74	9.70	3.21e-52
-chrXIII-13	chrXIII	287277	287343	+	452.7	0.625	88.000000	86.5	5.5	15.79	6.28e-70	11.01	1.74e-57
-chrXVI-9	chrXVI	527021	527087	+	452.7	0.638	94.000000	86.5	6.8	12.81	1.12e-62	22.64	1.11e-82
-chrXIII-14	chrXIII	388271	388337	+	450.1	0.608	88.000000	86.0	5.4	15.98	1.47e-70	19.08	1.01e-75
-chrXVI-17	chrXVI	40424	40490	+	444.9	0.601	78.000000	85.0	5.6	15.24	4.03e-68	12.25	1.24e-60
-chrXVI-11	chrXVI	465718	465784	+	444.9	0.915	89.000000	85.5	7.4	11.50	2.68e-58	42.15	3.81e-104
-chrVII-13	chrVII	484124	484190	+	442.2	0.621	87.500000	84.5	6.9	12.16	1.63e-59	6.62	8.34e-40
-chrII-5	chrII	466385	466451	+	437.0	0.689	83.500000	83.5	3.0	27.53	1.27e-86	29.94	1.52e-89
-chrXI-9	chrXI	514583	514649	+	437.0	0.661	85.500000	83.5	3.3	25.10	2.03e-83	9.80	9.69e-52
-chrIV-9	chrIV	159390	159456	+	434.4	0.747	93.000000	83.0	6.4	13.05	2.32e-61	39.13	4.01e-99
-chrXV-10	chrXV	988532	988598	+	434.4	0.627	90.500000	83.0	4.2	19.73	2.48e-75	9.22	1.28e-48
-chrII-4	chrII	419700	419766	+	429.2	0.663	88.000000	82.0	7.6	10.74	2.68e-54	13.52	8.44e-62
-chrXVI-12	chrXVI	193129	193195	+	429.2	0.644	85.500000	82.5	3.7	22.19	3.14e-78	17.76	6.62e-71
-chrXVI-13	chrXVI	739665	739731	+	429.2	0.619	85.500000	83.0	5.2	16.00	3.25e-68	28.67	3.29e-87
-chrIV-12	chrIV	369148	369214	+	426.5	0.743	81.500000	81.5	1.4	59.49	5.27e-111	13.45	6.63e-61
-chrIV-11	chrIV	387057	387123	+	426.5	0.641	83.500000	83.5	3.3	25.10	2.03e-83	22.93	2.13e-78
-chrXV-12	chrXV	520653	520719	+	426.5	0.571	83.000000	83.5	6.1	13.76	6.13e-63	25.97	1.31e-81
-chrXVI-14	chrXVI	840715	840781	+	426.5	0.754	84.000000	82.0	4.0	20.44	1.20e-75	17.37	1.86e-67
-chrV-8	chrV	6296	6362	+	423.9	0.733	78.000000	81.0	5.3	15.33	3.40e-65	37.01	7.16e-95
-chrXI-10	chrXI	230763	230829	+	423.9	0.567	82.500000	81.0	4.7	17.25	4.36e-69	7.50	2.10e-42
-chrXIII-12	chrXIII	915259	915325	+	423.9	0.666	90.000000	81.0	4.5	18.00	1.68e-70	21.89	4.70e-77
-chrXII-55	chrXII	809316	809382	+	421.3	0.582	88.500000	88.5	5.8	15.33	1.82e-70	23.31	5.31e-78
-chrXII-56	chrXII	1065203	1065269	+	421.3	0.704	87.000000	83.5	4.9	17.07	3.45e-70	20.49	4.03e-72
-chrXVI-15	chrXVI	502500	502566	+	421.3	0.604	83.500000	80.5	4.5	17.88	3.03e-69	11.13	4.01e-54
-chrII-6	chrII	419891	419957	+	416.1	0.617	82.000000	81.0	4.6	17.61	8.73e-70	12.90	3.34e-57
-chrXV-13	chrXV	770361	770427	+	416.1	0.539	82.000000	79.5	4.0	19.82	9.85e-72	21.37	1.71e-73
-chrII-8	chrII	140551	140617	+	413.5	0.632	79.000000	80.5	3.8	21.09	1.10e-74	15.56	5.83e-61
-chrV-9	chrV	491225	491291	+	413.5	0.705	77.500000	79.0	4.9	16.15	2.66e-65	23.26	3.47e-77
-chrXIV-9	chrXIV	662198	662264	+	413.5	0.674	80.500000	80.5	4.4	18.28	5.76e-70	19.29	4.52e-71
-chrXVI-8	chrXVI	829292	829358	+	413.5	0.690	98.500000	84.5	5.3	15.99	8.75e-69	13.54	1.15e-59
-chrIV-13	chrIV	410934	411000	+	410.8	0.804	81.000000	78.5	3.2	24.31	1.86e-77	24.84	2.29e-78
-chrVII-15	chrVII	20423	20489	+	408.2	0.563	78.000000	78.0	6.6	11.90	6.84e-55	10.15	3.15e-44
-chrXIII-15	chrXIII	282987	283053	+	408.2	0.657	87.500000	80.5	6.9	11.59	3.26e-55	9.37	1.42e-47
-chrXV-16	chrXV	55237	55303	+	405.6	0.647	79.500000	77.5	5.6	13.89	8.41e-59	30.12	2.20e-83
-chrXV-17	chrXV	882195	882261	+	405.6	0.612	78.000000	78.0	4.7	16.61	2.16e-65	18.49	9.31e-68
-chrIV-10	chrIV	1014041	1014107	+	403.0	0.664	93.000000	77.0	4.3	17.88	6.50e-67	12.57	6.59e-56
-chrXV-18	chrXV	43515	43581	+	400.4	0.856	76.500000	76.5	7.1	10.71	3.64e-50	44.74	4.98e-95
-chrXV-19	chrXV	285783	285849	+	400.4	0.775	76.500000	76.5	2.9	26.06	1.03e-77	30.12	2.50e-82
-chrVII-16	chrVII	404861	404927	+	397.8	0.953	78.000000	76.0	3.4	22.19	7.76e-73	29.50	7.26e-82
-chrXI-11	chrXI	231652	231718	+	397.8	0.662	80.000000	77.0	2.5	30.27	9.44e-84	7.41	1.44e-39
-chrXII-57	chrXII	950814	950880	+	397.8	0.644	78.000000	76.0	3.1	24.27	1.14e-75	11.93	1.30e-53
-chrXVI-23	chrXVI	38701	38767	+	397.8	0.648	72.500000	78.0	4.6	16.96	4.60e-66	10.72	2.15e-50
-chrIX-7	chrIX	21930	21996	+	395.1	0.628	76.000000	75.5	6.2	12.25	1.62e-53	13.85	3.17e-57
-chrXI-12	chrXI	258890	258956	+	395.1	0.779	79.000000	75.5	5.1	14.84	2.62e-59	16.68	1.93e-61
-chrXI-13	chrXI	518709	518775	+	395.1	0.571	76.000000	75.5	4.5	16.77	4.75e-63	9.07	1.19e-44
-chrXIII-18	chrXIII	906059	906125	+	395.1	0.634	76.000000	76.0	6.8	11.10	2.00e-51	20.35	5.22e-69
-chrIV-17	chrIV	507465	507531	+	387.3	0.652	74.500000	74.0	5.3	14.00	5.21e-57	20.11	5.93e-68
-chrV-10	chrV	284833	284899	+	384.7	0.648	76.500000	73.5	2.9	25.04	1.71e-73	15.98	5.79e-60
-chrVII-17	chrVII	23622	23688	+	384.7	0.565	75.500000	73.5	5.1	14.44	5.64e-57	10.72	1.84e-48
-chrXII-59	chrXII	370433	370499	+	384.7	0.637	76.500000	73.5	3.5	20.86	5.79e-68	7.64	3.21e-38
-chrII-7	chrII	555828	555894	+	382.1	0.633	81.500000	74.5	5.2	14.37	1.44e-57	11.04	4.68e-46
-chrIV-15	chrIV	543804	543870	+	382.1	0.670	77.500000	73.0	5.5	13.32	8.57e-55	7.20	2.91e-37
-chrIV-14	chrIV	721745	721811	+	382.1	0.636	78.000000	73.0	4.2	17.35	1.27e-62	16.10	1.36e-59
-chrX-8	chrX	220367	220433	+	382.1	0.633	81.000000	75.5	4.9	15.43	1.68e-60	18.20	5.28e-63
-chrXIII-19	chrXIII	653212	653278	+	382.1	0.636	75.000000	73.0	2.3	32.44	1.27e-81	14.82	6.32e-58
-chrII-16	chrII	5497	5563	+	379.4	0.795	69.500000	72.5	5.2	13.98	2.90e-55	16.77	1.39e-60
-chrIV-19	chrIV	1161897	1161963	+	379.4	0.659	73.000000	72.5	3.1	23.15	3.67e-70	14.15	7.15e-55
-chrXVI-19	chrXVI	455215	455281	+	379.4	0.684	74.500000	72.5	3.7	19.50	4.86e-65	14.07	1.89e-55
-chrII-9	chrII	136042	136108	+	376.8	0.651	78.500000	72.0	6.1	11.87	9.76e-51	15.47	2.02e-58
-chrIII-2	chrIII	122814	122880	+	376.8	0.541	84.000000	72.0	5.1	14.15	8.09e-56	9.05	1.69e-42
-chrXII-58	chrXII	954964	955030	+	376.8	0.639	78.000000	72.0	3.6	19.89	7.84e-66	12.01	4.51e-51
-chrXV-22	chrXV	109599	109665	+	376.8	0.571	72.500000	73.0	4.9	14.92	3.90e-58	13.55	1.28e-53
-chrV-11	chrV	69359	69425	+	374.2	0.652	72.500000	71.5	5.7	12.60	1.50e-51	20.21	3.28e-65
-chrXII-61	chrXII	636318	636384	+	374.2	0.758	74.500000	71.5	2.4	29.23	4.05e-76	27.86	1.08e-74
-chrIV-16	chrIV	599931	599997	+	371.6	0.680	75.000000	71.0	5.4	13.19	4.61e-53	18.07	1.90e-60
-chrIV-20	chrIV	1469012	1469078	+	371.6	0.653	72.000000	72.0	3.9	18.39	1.61e-63	21.14	9.87e-67
-chrVII-20	chrVII	1083532	1083598	+	371.6	0.659	72.000000	71.0	5.1	13.95	1.15e-54	12.13	1.14e-50
-chrXII-60	chrXII	416930	416996	+	371.6	0.721	75.500000	72.0	4.8	15.02	1.50e-57	39.87	1.26e-85
-chrV-13	chrV	84775	84841	+	369.0	0.668	70.500000	70.5	5.4	13.10	6.08e-52	8.50	4.78e-38
-chrXI-14	chrXI	615004	615070	+	369.0	0.703	75.000000	70.5	2.7	25.73	2.45e-71	21.93	1.10e-66
-chrII-13	chrII	419435	419501	+	366.4	0.590	71.500000	72.5	4.4	16.46	4.79e-60	11.44	2.41e-48
-chrVII-22	chrVII	592497	592563	+	366.4	0.536	70.000000	70.0	4.5	15.55	5.35e-57	10.62	2.65e-46
-chrXII-66	chrXII	10852	10918	+	366.4	0.567	63.000000	70.0	5.8	12.12	5.64e-50	13.26	1.72e-52
-chrXIII-20	chrXIII	119275	119341	+	366.4	0.709	73.500000	70.0	6.9	10.08	7.54e-45	30.98	5.46e-77
-chrXVI-21	chrXVI	551937	552003	+	366.4	0.739	73.500000	70.0	5.2	13.50	5.52e-53	31.35	2.42e-77
-chrIV-21	chrIV	1011742	1011808	+	363.7	0.644	69.500000	71.5	4.1	17.40	7.81e-61	10.90	7.21e-45
-chrXV-23	chrXV	638827	638893	+	363.7	0.734	72.500000	69.5	6.4	10.93	3.06e-46	24.47	3.81e-67
-chrII-17	chrII	341870	341936	+	361.1	0.755	69.500000	69.0	3.7	18.56	3.39e-61	18.04	2.13e-60
-chrX-10	chrX	195662	195728	+	361.1	0.582	69.000000	70.0	6.2	11.35	3.78e-48	17.92	1.14e-57
-chrXIV-12	chrXIV	6268	6334	+	361.1	0.763	69.000000	69.0	5.2	13.30	7.45e-52	13.88	4.96e-53
-chrII-11	chrII	561118	561184	+	358.5	0.691	73.500000	68.5	2.7	25.00	1.58e-68	21.75	8.53e-65
-chrVIII-3	chrVIII	462176	462242	+	358.5	0.719	70.000000	68.5	3.9	17.50	1.70e-58	30.27	5.70e-74
-chrVIII-4	chrVIII	521969	522035	+	358.5	0.812	69.500000	68.5	5.0	13.73	8.80e-52	33.69	6.28e-76
-chrXIII-16	chrXIII	472934	473000	+	358.5	0.606	77.000000	68.5	3.7	18.42	6.30e-60	19.28	2.12e-61
-chrVII-26	chrVII	1000178	1000244	+	355.9	0.636	65.500000	68.0	6.5	10.53	8.54e-45	19.11	3.68e-61
-chrXII-63	chrXII	677722	677788	+	355.9	0.703	72.000000	68.0	5.1	13.36	2.99e-51	21.50	1.83e-64
-chrII-15	chrII	554774	554840	+	353.3	0.674	71.000000	67.5	4.8	14.08	9.98e-52	11.24	1.09e-45
-chrIV-22	chrIV	680224	680290	+	353.3	0.738	68.500000	67.5	6.2	10.95	5.32e-45	33.92	4.05e-76
-chrXI-15	chrXI	382077	382143	+	353.3	0.624	70.500000	70.5	6.2	11.44	3.78e-48	14.97	2.16e-53
-chrXIV-11	chrXIV	576246	576312	+	353.3	0.642	74.000000	67.5	6.2	10.95	5.32e-45	23.41	1.05e-65
-chrXVI-25	chrXVI	280209	280275	+	353.3	0.700	69.500000	69.0	4.9	14.10	1.79e-53	28.27	5.53e-71
-chrXVI-18	chrXVI	425618	425684	+	353.3	0.690	74.500000	67.5	5.7	11.89	3.38e-47	28.31	5.04e-71
-chrXV-21	chrXV	109766	109832	+	350.7	0.534	73.500000	67.0	6.4	10.53	3.56e-44	12.59	6.44e-49
-chrIV-18	chrIV	551028	551094	+	348.0	0.564	74.500000	66.5	4.2	15.80	4.48e-54	15.21	4.71e-53
-chrVII-21	chrVII	599192	599258	+	342.8	0.690	71.000000	71.0	5.3	13.44	1.38e-53	22.89	1.90e-62
-chrIX-8	chrIX	388516	388582	+	342.8	0.548	68.000000	65.5	5.1	12.87	6.86e-48	6.00	7.64e-29
-chrXVI-27	chrXVI	520495	520561	+	342.8	0.760	68.000000	66.0	3.9	16.86	5.06e-56	30.54	5.12e-71
-chrXVI-26	chrXVI	296837	296903	+	340.2	0.580	68.500000	65.0	4.5	14.44	4.23e-51	14.69	1.50e-51
-chrII-12	chrII	555958	556024	+	337.6	0.600	72.000000	64.5	5.3	12.21	8.10e-46	10.38	1.06e-41
-chrX-11	chrX	268429	268495	+	337.6	0.601	66.500000	64.5	1.8	36.62	7.55e-75	25.40	5.19e-65
-chrXVI-28	chrXVI	297299	297365	+	337.6	0.514	65.500000	66.0	4.8	13.76	1.40e-50	14.55	1.53e-50
-chrIV-23	chrIV	636198	636264	+	335.0	0.741	68.000000	64.0	3.4	18.69	4.46e-57	31.01	1.43e-70
-chrXV-31	chrXV	1043240	1043306	+	335.0	0.560	64.000000	64.0	3.7	17.21	6.46e-55	13.54	1.14e-48
-chrIII-4	chrIII	1019	1085	+	332.3	0.545	65.000000	63.5	4.8	13.24	3.49e-47	26.90	1.57e-65
-chrXIII-22	chrXIII	271961	272027	+	332.3	0.683	65.500000	63.5	5.6	11.38	2.22e-43	21.62	8.52e-60
-chrIV-26	chrIV	722467	722533	+	329.7	0.679	63.000000	63.0	5.9	10.73	4.21e-42	13.54	1.52e-45
-chrIV-25	chrIV	1016128	1016194	+	327.1	0.707	63.500000	62.5	5.7	11.01	6.70e-42	9.70	8.11e-39
-chrVI-4	chrVI	176661	176727	+	327.1	0.598	63.500000	62.5	3.1	19.96	7.93e-57	23.37	7.05e-61
-chrVI-5	chrVI	255558	255624	+	327.1	0.681	63.500000	62.5	5.7	11.01	6.70e-42	23.64	3.58e-61
-chrVII-30	chrVII	371024	371090	+	327.1	0.619	62.500000	62.5	6.1	10.30	2.85e-40	16.39	8.34e-52
-chrXV-29	chrXV	27556	27622	+	327.1	0.644	64.500000	63.0	4.4	14.31	2.40e-49	9.42	1.59e-37
-chrXV-20	chrXV	882480	882546	+	327.1	0.660	74.500000	69.5	2.8	24.49	6.42e-69	14.53	8.72e-49
-chrIV-27	chrIV	368691	368757	+	324.5	0.651	62.000000	62.0	4.3	14.40	9.39e-49	9.23	1.80e-35
-chrV-15	chrV	335521	335587	+	324.5	0.754	66.000000	62.0	4.6	13.48	4.20e-47	23.97	9.73e-62
-chrVII-32	chrVII	785874	785940	+	324.5	0.617	62.000000	62.0	5.9	10.56	4.53e-41	13.61	2.11e-46
-chrVII-29	chrVII	959533	959599	+	324.5	0.637	63.000000	62.0	4.1	15.09	6.36e-50	20.45	1.18e-57
-chrIX-10	chrIX	142695	142761	+	321.9	0.701	64.000000	61.5	4.3	14.28	1.35e-47	8.97	7.68e-35
-chrX-12	chrX	663145	663211	+	321.9	0.649	64.000000	61.5	4.8	12.83	5.94e-45	19.36	3.64e-55
-chrXI-16	chrXI	260670	260736	+	321.9	0.715	64.500000	63.0	5.0	12.62	3.58e-46	13.41	4.87e-46
-chrXIV-15	chrXIV	440873	440939	+	321.9	0.542	62.500000	63.0	3.4	18.39	8.35e-56	13.25	1.67e-44
-chrXVI-31	chrXVI	527237	527303	+	321.9	0.595	62.500000	62.5	6.1	10.30	2.85e-40	15.38	2.05e-49
-chrVII-14	chrVII	413397	413463	+	319.3	0.613	80.000000	62.5	4.6	13.59	4.20e-47	21.38	7.10e-58
-chrVII-33	chrVII	809664	809730	+	319.3	0.650	62.000000	61.0	5.3	11.54	1.38e-42	10.49	1.21e-39
-chrVIII-8	chrVIII	296913	296979	+	314.0	0.700	60.500000	60.0	4.1	14.60	1.43e-47	14.44	2.63e-47
-chrXI-17	chrXI	428951	429017	+	314.0	0.681	60.500000	60.0	4.4	13.63	6.72e-46	23.05	7.07e-58
-chrXIII-24	chrXIII	433642	433708	+	311.4	0.598	60.000000	59.5	4.6	12.94	9.84e-44	10.20	3.66e-38
-chrXV-27	chrXV	671020	671086	+	308.8	0.778	66.500000	59.0	3.1	18.84	5.88e-53	19.48	9.09e-54
-chrXV-30	chrXV	742462	742528	+	308.8	0.662	64.000000	59.0	3.7	15.87	8.36e-49	26.24	4.63e-59
-chrIV-24	chrIV	1080774	1080840	+	306.2	0.755	64.500000	58.5	3.2	18.12	6.00e-51	24.92	1.32e-58
-chrVII-28	chrVII	584191	584257	+	306.2	0.686	64.000000	60.5	5.4	11.24	4.35e-41	21.52	4.55e-55
-chrXIII-21	chrXIII	388442	388508	+	306.2	0.656	69.500000	70.5	6.7	10.60	4.90e-46	12.34	3.22e-41
-chrXIV-17	chrXIV	198338	198404	+	306.2	0.695	59.000000	58.5	4.3	13.59	3.68e-44	17.56	2.29e-49
-chrXVI-33	chrXVI	587168	587234	+	306.2	0.597	59.500000	58.5	4.9	11.96	3.43e-41	9.09	6.19e-35
-chrXVI-35	chrXVI	641631	641697	+	306.2	0.673	58.500000	58.5	5.0	11.72	9.82e-41	8.59	1.11e-33
-chrVII-31	chrVII	654143	654209	+	303.6	0.711	62.500000	61.5	5.0	12.32	5.63e-44	14.18	2.34e-45
-chrIX-11	chrIX	249468	249534	+	303.6	0.667	59.000000	59.0	4.4	13.40	9.16e-45	13.49	3.43e-44
-chrXVI-37	chrXVI	75363	75429	+	303.6	0.719	58.000000	58.0	4.8	12.10	1.17e-41	19.02	2.56e-52
-chrXVI-36	chrXVI	645687	645753	+	303.6	0.570	58.500000	58.0	2.3	24.70	1.36e-58	8.24	5.90e-33
-chrVII-24	chrVII	324010	324076	+	298.3	0.688	68.000000	61.5	4.6	13.37	5.67e-46	13.65	9.78e-44
-chrXIII-23	chrXIII	287854	287920	+	298.3	0.678	62.500000	57.0	5.1	11.20	3.14e-39	7.21	1.57e-29
-chrXV-34	chrXV	218724	218790	+	298.3	0.741	58.000000	57.0	2.3	25.33	3.26e-58	16.16	1.24e-47
-chrXVI-30	chrXVI	645264	645330	+	298.3	0.534	64.000000	57.0	3.2	17.65	1.08e-49	8.08	5.63e-32
-chrIV-33	chrIV	546174	546240	+	295.7	0.601	56.500000	56.5	4.5	12.55	6.54e-41	6.48	9.60e-26
-chrIV-30	chrIV	62197	62263	+	293.1	0.731	58.000000	56.0	5.6	10.04	3.73e-36	28.05	1.30e-59
-chrVII-35	chrVII	428127	428193	+	293.1	0.808	60.000000	56.0	4.3	13.01	6.57e-42	19.24	7.75e-51
-chrX-15	chrX	119991	120057	+	293.1	0.553	57.000000	56.0	4.7	11.92	5.85e-40	12.08	2.27e-39
-chrXI-18	chrXI	99952	100018	+	293.1	0.754	58.500000	58.5	5.4	10.87	5.34e-39	15.92	1.73e-46
-chrIV-32	chrIV	1468719	1468785	+	290.5	0.580	57.500000	55.5	4.6	12.07	2.42e-39	15.73	1.97e-44
-chrXIV-18	chrXIV	427050	427116	+	290.5	0.702	58.500000	57.0	5.3	10.79	2.23e-38	20.93	9.30e-51
-chrVII-39	chrVII	206441	206507	+	287.9	0.719	57.500000	55.0	5.5	10.04	1.56e-35	12.49	2.72e-40
-chrIX-9	chrIX	139364	139430	+	285.2	0.584	64.500000	54.5	3.8	14.28	2.62e-42	7.50	3.79e-26
-chrXV-40	chrXV	978454	978520	+	285.2	0.603	54.500000	54.5	5.0	10.92	1.62e-36	7.88	1.11e-29
-chrIV-29	chrIV	636338	636404	+	282.6	0.589	58.500000	54.0	3.8	14.15	2.62e-42	25.06	8.24e-54
-chrIV-38	chrIV	1011453	1011519	+	282.6	0.623	54.000000	54.0	5.0	10.82	1.62e-36	8.69	6.70e-32
-chrVII-49	chrVII	780629	780695	+	282.6	0.707	47.500000	54.0	4.9	11.04	6.13e-37	13.44	1.58e-39
-chrXIV-19	chrXIV	355438	355504	+	282.6	0.616	58.000000	56.5	5.0	11.32	1.31e-38	17.55	5.36e-46
-chrVII-43	chrVII	987036	987102	+	280.0	0.573	54.000000	53.5	4.2	12.71	4.48e-39	8.33	2.75e-30
-chrXII-69	chrXII	187576	187642	+	280.0	0.614	53.500000	53.5	3.5	15.19	7.13e-43	19.62	1.24e-48
-chrII-21	chrII	117010	117076	+	277.4	0.816	54.000000	53.0	4.2	12.60	4.48e-39	27.67	3.28e-56
-chrXI-19	chrXI	68041	68107	+	277.4	0.694	57.000000	53.0	4.8	11.05	2.56e-36	13.07	7.23e-40
-chrXI-20	chrXI	99680	99746	+	277.4	0.629	57.000000	53.0	3.0	17.47	4.16e-46	14.90	1.17e-42
-chrXIV-20	chrXIV	276067	276133	+	277.4	0.647	54.500000	53.0	2.9	18.05	8.06e-47	18.25	5.39e-46
-chrXV-36	chrXV	216604	216670	+	277.4	0.684	57.000000	53.5	3.5	15.19	7.13e-43	15.20	4.32e-43
-chrIV-28	chrIV	539361	539427	+	274.8	0.677	61.500000	52.5	4.3	12.19	1.70e-37	6.57	4.15e-25
-chrIV-31	chrIV	722768	722834	+	274.8	0.620	58.000000	52.5	4.9	10.73	7.36e-35	11.40	4.26e-36
-chrIII-5	chrIII	123856	123922	+	272.2	0.595	57.000000	52.0	4.3	12.08	1.70e-37	6.42	7.78e-25
-chrXIII-33	chrXIII	362254	362320	+	272.2	0.596	52.500000	52.0	3.2	16.10	1.55e-43	14.96	5.37e-41
-chrXV-48	chrXV	160940	161006	+	272.2	0.590	52.000000	52.0	3.7	13.98	1.47e-40	13.81	2.40e-39
-chrXV-44	chrXV	825684	825750	+	272.2	0.587	53.500000	53.5	3.7	14.39	1.03e-41	25.96	8.53e-54
-chrIV-40	chrIV	544322	544388	+	269.5	0.766	53.000000	52.0	4.9	10.63	7.36e-35	6.82	2.38e-25
-chrXII-70	chrXII	322989	323055	+	269.5	0.670	53.500000	54.0	4.3	12.54	1.10e-39	15.27	1.23e-41
-chrV-17	chrV	284628	284694	+	266.9	0.572	64.500000	51.0	3.3	15.33	1.04e-41	10.60	3.54e-34
-chrXV-47	chrXV	1059183	1059249	+	266.9	0.603	52.500000	51.0	3.5	14.48	1.59e-40	10.74	1.97e-34
-chrXII-72	chrXII	660327	660393	+	264.3	0.543	53.000000	50.5	3.3	15.18	1.60e-40	13.13	1.33e-37
-chrXIII-35	chrXIII	589728	589794	+	264.3	0.654	50.500000	51.5	4.8	10.74	3.08e-34	24.40	2.14e-46
-chrXIV-16	chrXIV	503098	503164	+	264.3	0.705	62.000000	53.0	3.6	14.64	2.77e-42	12.52	6.06e-36
-chrXVI-40	chrXVI	641819	641885	+	264.3	0.610	52.000000	52.5	4.7	11.18	1.07e-35	7.26	3.02e-26
-chrI-6	chrI	68295	68361	+	261.7	0.569	50.000000	50.0	2.7	18.25	1.73e-44	9.19	5.73e-30
-chrII-26	chrII	195934	196000	+	261.7	0.592	50.000000	50.0	3.2	15.48	3.96e-41	13.67	1.16e-37
-chrII-25	chrII	221334	221400	+	261.7	0.794	51.000000	50.0	3.3	15.03	1.60e-40	12.89	1.03e-36
-chrV-19	chrV	268422	268488	+	261.7	0.605	53.000000	51.5	4.5	11.44	1.64e-35	9.75	6.71e-32
-chrVII-45	chrVII	620086	620152	+	261.7	0.739	53.000000	53.0	5.1	10.42	4.47e-35	23.89	6.39e-48
-chrXI-23	chrXI	2873	2939	+	261.7	0.769	50.000000	50.0	4.7	10.65	1.29e-33	18.63	3.48e-43
-chrII-22	chrII	555448	555514	+	256.4	0.597	52.000000	49.0	3.8	12.84	1.24e-36	7.88	2.92e-27
-chrX-16	chrX	360705	360771	+	256.4	0.640	49.000000	49.0	4.9	10.02	8.38e-32	18.56	5.72e-44
-chrXV-46	chrXV	391497	391563	+	256.4	0.652	52.500000	49.0	2.9	16.69	7.66e-42	18.94	2.19e-44
-chrVIII-13	chrVIII	48306	48372	+	253.8	0.669	51.500000	48.5	4.7	10.33	1.44e-31	16.14	3.67e-40
-chrXIII-39	chrXIII	653023	653089	+	253.8	0.623	48.500000	48.5	3.6	13.40	1.54e-36	9.31	4.73e-29
-chrI-8	chrI	68600	68666	+	251.2	0.596	48.500000	49.0	2.8	17.27	1.60e-42	8.42	7.13e-27
-chrII-29	chrII	477124	477190	+	251.2	0.662	48.000000	48.0	1.7	28.85	6.42e-52	18.90	1.80e-43
-chrIV-41	chrIV	591884	591950	+	251.2	0.634	52.000000	48.0	4.0	11.96	1.45e-34	8.35	2.86e-27
-chrII-31	chrII	476748	476814	+	248.6	0.692	47.500000	47.5	4.0	11.84	1.74e-33	18.80	2.68e-42
-chrIV-43	chrIV	1490402	1490468	+	248.6	0.622	50.500000	47.5	4.7	10.11	1.47e-30	10.24	8.55e-31
-chrXIII-32	chrXIII	653531	653597	+	248.6	0.553	53.500000	49.0	3.7	13.18	3.82e-37	9.28	5.43e-29
-chrXIV-22	chrXIV	662503	662569	+	248.6	0.745	53.500000	48.0	3.1	15.33	2.34e-39	11.05	3.42e-32
-chrX-18	chrX	123584	123650	+	246.0	0.667	47.500000	47.0	3.5	13.34	6.22e-36	10.13	3.58e-30
-chrXI-24	chrXI	463688	463754	+	246.0	0.743	49.000000	47.0	4.4	10.67	9.43e-32	19.63	2.47e-43
-chrXII-77	chrXII	954604	954670	+	246.0	0.568	47.500000	47.0	4.3	10.92	3.61e-32	7.30	3.54e-24
-chrII-19	chrII	165085	165151	+	243.4	0.567	56.000000	48.0	4.6	10.44	5.75e-32	10.51	1.24e-30
-chrIV-42	chrIV	909633	909699	+	243.4	0.605	51.000000	47.5	3.4	13.87	1.82e-36	20.13	1.01e-42
-chrVII-46	chrVII	557735	557801	+	243.4	0.706	50.000000	46.5	4.0	11.59	2.04e-32	18.53	3.73e-41
-chrXV-45	chrXV	1039472	1039538	+	243.4	0.593	53.500000	46.5	2.3	20.66	3.23e-43	9.88	1.58e-29
-chrXVI-43	chrXVI	453749	453815	+	240.7	0.560	49.000000	46.0	3.9	11.75	7.22e-33	8.57	3.60e-27
-chrXVI-41	chrXVI	828915	828981	+	240.7	0.651	52.000000	46.0	4.2	10.93	1.51e-31	7.57	5.38e-25
-chrIII-8	chrIII	163607	163673	+	238.1	0.609	50.000000	49.0	4.3	11.38	2.83e-34	13.66	3.63e-34
-chrV-28	chrV	222394	222460	+	238.1	0.607	45.500000	45.5	4.3	10.57	4.23e-30	12.21	8.51e-31
-chrXI-26	chrXI	258609	258675	+	235.5	0.640	45.000000	45.0	3.9	11.50	8.50e-32	9.01	5.31e-25
-chrIV-55	chrIV	1420927	1420993	+	232.9	0.686	44.500000	44.5	3.9	11.37	9.79e-31	17.40	1.72e-38
-chrXIII-43	chrXIII	362062	362128	+	232.9	0.593	44.500000	44.5	2.5	17.49	2.19e-38	12.27	4.46e-32
-chrIV-44	chrIV	357369	357435	+	230.3	0.601	50.000000	44.0	4.2	10.46	1.77e-29	15.55	1.78e-36
-chrII-33	chrII	221628	221694	+	227.7	0.585	45.000000	43.5	2.8	15.33	3.11e-35	10.18	4.28e-25
-chrIII-9	chrIII	163461	163527	+	227.7	0.671	46.500000	43.5	3.1	13.89	1.61e-33	13.63	3.40e-33
-chrXIII-37	chrXIII	271730	271796	+	227.7	0.630	49.500000	45.5	4.5	10.11	2.58e-29	13.77	2.32e-33
-chrIV-63	chrIV	1087122	1087188	+	219.8	0.884	42.000000	42.0	3.2	13.01	7.34e-32	23.45	5.27e-42
-chrXIII-44	chrXIII	653741	653807	+	219.8	0.589	44.500000	42.0	4.0	10.47	3.11e-28	8.12	4.26e-24
-chrVII-57	chrVII	968942	969008	+	217.2	0.628	42.500000	41.5	2.5	16.31	1.06e-34	20.42	1.39e-37
-chrIII-11	chrIII	137337	137403	+	214.6	0.649	44.500000	41.5	3.8	10.87	5.09e-28	18.31	7.62e-37
-chrIV-59	chrIV	1213736	1213802	+	214.6	0.750	43.500000	41.5	4.1	10.10	7.98e-27	21.10	3.28e-37
-chrV-20	chrV	141206	141272	+	214.6	0.622	52.000000	43.0	3.8	11.27	4.09e-30	8.99	1.36e-24
-chrVIII-20	chrVIII	390074	390140	+	214.6	0.754	42.500000	41.0	3.9	10.47	1.31e-27	20.47	9.97e-39
-chrIX-22	chrIX	139187	139253	+	214.6	0.573	42.500000	42.5	3.6	11.74	6.12e-30	6.17	2.46e-19
-chrXII-86	chrXII	728344	728410	+	214.6	0.681	44.000000	43.5	2.2	20.21	4.21e-40	11.69	2.16e-29
-chrXIII-41	chrXIII	852264	852330	+	214.6	0.637	45.500000	41.5	3.2	12.85	9.56e-31	15.05	1.48e-33
-chrXIII-48	chrXIII	434337	434403	+	209.3	0.543	42.000000	40.0	3.9	10.22	1.37e-26	6.31	3.16e-19
-chrV-36	chrV	311589	311655	+	206.7	0.645	39.500000	39.5	3.4	11.53	1.24e-27	16.43	3.42e-33
-chrVII-63	chrVII	856933	856999	+	206.7	0.717	40.500000	41.5	2.3	17.67	4.82e-36	14.71	1.13e-30
-chrX-24	chrX	337790	337856	+	206.7	0.610	42.000000	40.5	3.0	13.35	1.21e-30	14.41	4.12e-31
-chrXII-97	chrXII	921637	921703	+	206.7	0.667	40.000000	39.5	3.3	11.87	4.40e-28	15.55	2.52e-32
-chrVII-58	chrVII	271503	271569	+	204.1	0.676	41.500000	39.0	3.5	11.07	3.38e-27	13.37	3.90e-30
-chrX-23	chrX	455200	455266	+	201.5	0.586	42.500000	41.0	3.3	12.32	2.96e-30	12.24	2.26e-27
-chrX-28	chrX	639769	639835	+	201.5	0.617	38.500000	38.5	3.2	11.92	1.83e-27	8.93	3.82e-23
-chrXII-103	chrXII	710566	710632	+	201.5	0.661	38.500000	38.5	3.8	10.09	5.90e-25	18.01	8.31e-34
-chrVI-11	chrVI	95235	95301	+	198.9	0.641	39.500000	38.0	2.6	14.38	1.58e-30	9.80	6.52e-24
-chrX-25	chrX	454966	455032	+	198.9	0.652	41.000000	38.0	2.5	14.94	4.14e-31	11.89	2.23e-25
-chrXIII-52	chrXIII	349883	349949	+	198.9	0.683	39.000000	38.0	3.7	10.22	2.42e-25	6.63	4.70e-19
-chrX-30	chrX	360945	361011	+	196.3	0.674	38.000000	37.5	3.6	10.36	1.02e-24	13.99	3.77e-29
-chrIII-12	chrIII	85421	85487	+	193.6	0.726	42.500000	37.5	2.0	19.16	6.66e-34	14.93	2.52e-30
-chrX-33	chrX	224130	224196	+	193.6	0.691	37.000000	37.0	3.1	11.82	7.59e-27	7.63	1.50e-20
-chrXV-61	chrXV	430053	430119	+	193.6	0.903	42.000000	39.5	3.9	10.09	1.41e-25	16.88	3.53e-32
-chrXV-77	chrXV	837367	837433	+	191.0	0.642	37.000000	36.5	3.4	10.66	1.70e-24	11.70	7.95e-26
-chrIV-85	chrIV	927123	927189	+	188.4	0.743	36.500000	36.0	2.8	12.69	3.46e-27	14.54	3.60e-29
-chrVII-76	chrVII	371448	371514	+	188.4	0.667	36.000000	36.0	3.4	10.51	1.70e-24	9.70	2.36e-23
-chrIV-69	chrIV	504905	504971	+	185.8	0.848	39.500000	35.5	3.1	11.34	1.04e-24	9.62	1.88e-22
-chrXV-81	chrXV	1055156	1055222	+	185.8	0.656	36.500000	35.5	3.5	10.08	4.38e-23	8.94	1.85e-21
-chrXV-78	chrXV	109283	109349	+	180.6	0.707	36.500000	34.5	3.4	10.07	1.84e-22	6.32	1.98e-16
-chrXIII-56	chrXIII	759033	759099	+	177.9	0.612	37.000000	34.0	2.9	11.58	1.57e-24	11.36	2.06e-23
-chrXVI-60	chrXVI	189051	189117	+	177.9	0.514	38.500000	35.0	2.8	12.33	4.40e-26	6.90	1.03e-17
-chrII-48	chrII	378900	378966	+	172.7	0.556	35.000000	33.0	3.1	10.54	1.27e-22	6.28	4.34e-16
-chrX-39	chrX	160357	160423	+	172.7	0.735	34.000000	33.0	1.4	24.09	9.89e-34	16.73	9.32e-29
-chrX-26	chrX	639611	639677	+	167.5	0.576	39.000000	32.0	2.7	11.68	2.72e-23	7.36	1.50e-17
-chrX-43	chrX	663318	663384	+	167.5	0.656	33.000000	32.0	2.1	15.57	5.30e-27	9.48	1.17e-20
-chrXII-98	chrXII	796422	796488	+	164.9	0.707	39.500000	33.5	3.1	10.70	1.27e-22	11.01	1.07e-21
-chrXII-121	chrXII	875194	875260	+	164.9	0.810	32.500000	31.5	2.9	10.73	2.24e-21	14.35	5.63e-25
-chrVII-86	chrVII	733228	733294	+	159.6	0.562	32.000000	31.5	2.6	11.92	1.13e-22	11.84	4.18e-22
-chrX-50	chrX	391521	391587	+	159.6	0.741	31.000000	30.5	3.0	10.05	5.78e-20	15.92	1.74e-25
-chrX-51	chrX	392024	392090	+	159.6	0.767	31.000000	30.5	2.6	11.54	1.34e-21	15.30	5.32e-25
-chrXVI-79	chrXVI	67110	67176	+	159.6	0.733	31.000000	30.5	2.6	11.54	1.34e-21	11.30	7.06e-21
-chrVII-94	chrVII	959153	959219	+	157.0	0.615	30.000000	30.0	2.1	14.60	1.25e-24	9.21	3.96e-19
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-chrII-64	chrII	731457	731523	+	149.2	0.617	29.500000	28.5	2.4	11.65	2.34e-20	11.99	5.45e-20
-chrV-62	chrV	483170	483236	+	146.5	0.822	28.500000	28.0	1.7	16.83	1.02e-24	19.67	1.63e-26
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-chrIII-23	chrIII	205499	205565	+	143.9	0.871	29.000000	27.5	2.4	11.24	2.69e-19	18.16	1.57e-24
-chrXIV-59	chrXIV	427482	427548	+	143.9	0.734	28.000000	27.5	2.4	11.24	2.69e-19	9.81	7.51e-18
-chrII-72	chrII	452138	452204	+	141.3	0.616	28.500000	27.5	2.7	10.04	4.33e-18	10.89	3.73e-19
-chrII-68	chrII	392609	392675	+	136.1	0.645	29.000000	26.0	2.5	10.22	7.53e-18	10.53	3.70e-18
-chrV-65	chrV	474538	474604	+	136.1	0.787	28.000000	28.0	1.5	19.08	3.69e-26	12.87	3.10e-20
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scripts/data/reprocessed_mahendrawada_results/peaks/ACA1xstandard/A/ACA1xstandard_A_peaks_summits.txt

@@ -1,362 +0,0 @@
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-chrVII	856966	856967	chrVII-63	0	+
-chrX	337823	337824	chrX-24	0	+
-chrXII	921670	921671	chrXII-97	0	+
-chrVII	271536	271537	chrVII-58	0	+
-chrX	455233	455234	chrX-23	0	+
-chrX	639802	639803	chrX-28	0	+
-chrXII	710599	710600	chrXII-103	0	+
-chrVI	95268	95269	chrVI-11	0	+
-chrX	454999	455000	chrX-25	0	+
-chrXIII	349916	349917	chrXIII-52	0	+
-chrX	360978	360979	chrX-30	0	+
-chrIII	85454	85455	chrIII-12	0	+
-chrX	224163	224164	chrX-33	0	+
-chrXV	430086	430087	chrXV-61	0	+
-chrXV	837400	837401	chrXV-77	0	+
-chrIV	927156	927157	chrIV-85	0	+
-chrVII	371481	371482	chrVII-76	0	+
-chrIV	504938	504939	chrIV-69	0	+
-chrXV	1055189	1055190	chrXV-81	0	+
-chrXV	109316	109317	chrXV-78	0	+
-chrXIII	759066	759067	chrXIII-56	0	+
-chrXVI	189084	189085	chrXVI-60	0	+
-chrII	378933	378934	chrII-48	0	+
-chrX	160390	160391	chrX-39	0	+
-chrX	639644	639645	chrX-26	0	+
-chrX	663351	663352	chrX-43	0	+
-chrXII	796455	796456	chrXII-98	0	+
-chrXII	875227	875228	chrXII-121	0	+
-chrVII	733261	733262	chrVII-86	0	+
-chrX	391554	391555	chrX-50	0	+
-chrX	392057	392058	chrX-51	0	+
-chrXVI	67143	67144	chrXVI-79	0	+
-chrVII	959186	959187	chrVII-94	0	+
-chrV	311950	311951	chrV-58	0	+
-chrII	731490	731491	chrII-64	0	+
-chrV	483203	483204	chrV-62	0	+
-chrVI	225222	225223	chrVI-18	0	+
-chrIII	205532	205533	chrIII-23	0	+
-chrXIV	427515	427516	chrXIV-59	0	+
-chrII	452171	452172	chrII-72	0	+
-chrII	392642	392643	chrII-68	0	+
-chrV	474571	474572	chrV-65	0	+
-chrVII	271946	271947	chrVII-115	0	+

scripts/data/reprocessed_mahendrawada_results/peaks/ACA1xstandard/B/ACA1xstandard_B_annotatePeaks.err

@@ -1,46 +0,0 @@
-
-	Using Custom Genome
-	Peak file = results/peaks/ACA1xstandard/B/ACA1xstandard_B_peaks.txt
-	Genome = S288C_reference_sequence_R64-5-1_20240529_chr_normalized.fa
-	Organism = unknown
-	Custom annotation GTF file: /ref/mblab/data/yeast_data/reprocess_mahendrawada/mahendrawada_slurm_pipeline/sacCer3.ensGene.gtf (using transcript_id)
-	Peak/BED file conversion summary:
-		BED/Header formatted lines: 0
-		peakfile formatted lines: 270
-		Duplicated Peak IDs: 0
-
-	Peak File Statistics:
-		Total Peaks: 270
-		Redundant Peak IDs: 0
-		Peaks lacking information: 0 (need at least 5 columns per peak)
-		Peaks with misformatted coordinates: 0 (should be integer)
-		Peaks with misformatted strand: 0 (should be either +/- or 0/1)
-
-	Peak file looks good!
-
-	Reading Positions...
-	-----------------------
-	offset=0
-	Finding Closest TSS...
-	Processing custom annotation file...
-	Features that will be considered:
-		exon
-
-	7507 lines contained useful feature information
-	Parsing GTF to make an annotation table from attributes...
-	Features that will be considered:
-		exon
-
-	7507 lines contained useful feature information
-assignGenomeAnnotation: error while loading shared libraries: libstdc++.so.6: cannot open shared object file: No such file or directory
-	Could not find basic annotation file (0.986492395707504.2.tmp)
-	Features that will be considered:
-		exon
-
-	7507 lines contained useful feature information
-assignGenomeAnnotation: error while loading shared libraries: libstdc++.so.6: cannot open shared object file: No such file or directory
-	Counting Tags in Peaks from each directory...
-	Organism: unknown
-	Outputing Annotation File...
-	Done annotating peaks file
-

scripts/data/reprocessed_mahendrawada_results/peaks/ACA1xstandard/B/ACA1xstandard_B_annotated_peaks.txt

@@ -1,271 +0,0 @@
-PeakID (cmd=annotatePeaks.pl results/peaks/ACA1xstandard/B/ACA1xstandard_B_peaks.txt /ref/mblab/data/S288C_R64/S288C_reference_genome_R64-5-1_20240529/S288C_reference_sequence_R64-5-1_20240529_chr_normalized.fa -gtf /ref/mblab/data/yeast_data/reprocess_mahendrawada/mahendrawada_slurm_pipeline/sacCer3.ensGene.gtf)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type
-chrXVI-1	chrXVI	679003	679073	+	2061.5	0.728	NA	NA	87	YPR064W_mRNA	YPR064W	YPR064W_mRNA			YPR064W			
-chrVI-1	chrVI	31326	31396	+	1767.0	0.762	NA	NA	-821	YFL051C_mRNA	YFL051C	YFL051C_mRNA			YFL051C			
-chrXIII-2	chrXIII	306296	306366	+	1363.9	0.667	NA	NA	-738	YMR016C_mRNA	YMR016C	YMR016C_mRNA			YMR016C			
-chrXIII-1	chrXIII	540629	540699	+	1352.4	0.613	NA	NA	-535	YMR136W_mRNA	YMR136W	YMR136W_mRNA			YMR136W			
-chrXIII-3	chrXIII	306556	306626	+	1335.3	0.615	NA	NA	-898	YMR017W_mRNA	YMR017W	YMR017W_mRNA			YMR017W			
-chrXV-1	chrXV	908687	908757	+	1315.2	0.608	NA	NA	-621	YOR317W_mRNA	YOR317W	YOR317W_mRNA			YOR317W			
-chrXII-48	chrXII	11090	11160	+	1309.5	0.808	NA	NA	-601	YLL065W_mRNA	YLL065W	YLL065W_mRNA			YLL065W			
-chrXIV-1	chrXIV	6492	6562	+	1289.5	0.844	NA	NA	-34	YNL338W_mRNA	YNL338W	YNL338W_mRNA			YNL338W			
-chrXI-1	chrXI	231053	231123	+	1095.1	0.685	NA	NA	-1139	YKL109W_mRNA	YKL109W	YKL109W_mRNA			YKL109W			
-chrXV-3	chrXV	1084656	1084726	+	1083.7	0.719	NA	NA	-322	YOR394C-A_mRNA	YOR394C-A	YOR394C-A_mRNA			YOR394C-A			
-chrXIV-2	chrXIV	652025	652095	+	1029.3	0.705	NA	NA	-348	YNR013C_mRNA	YNR013C	YNR013C_mRNA			YNR013C			
-chrVII-1	chrVII	483657	483727	+	1023.6	0.559	NA	NA	432	YGL007W_mRNA	YGL007W	YGL007W_mRNA			YGL007W			
-chrIX-2	chrIX	386559	386629	+	1017.9	0.667	NA	NA	-893	YIR018C-A_mRNA	YIR018C-A	YIR018C-A_mRNA			YIR018C-A			
-chrIV-1	chrIV	976716	976786	+	1009.3	0.730	NA	NA	478	YDR260C_mRNA	YDR260C	YDR260C_mRNA			YDR260C			
-chrX-3	chrX	703575	703645	+	1003.6	0.632	NA	NA	-275	YJR146W_mRNA	YJR146W	YJR146W_mRNA			YJR146W			
-chrX-2	chrX	173277	173347	+	983.6	0.663	NA	NA	-945	YJL130C_mRNA	YJL130C	YJL130C_mRNA			YJL130C			
-chrVII-3	chrVII	1084388	1084458	+	955.0	0.739	NA	NA	-441	YGR296W_mRNA	YGR296W	YGR296W_mRNA			YGR296W			
-chrXV-2	chrXV	28007	28077	+	949.3	0.745	NA	NA	958	YOL155W-A_mRNA	YOL155W-A	YOL155W-A_mRNA			YOL155W-A			
-chrVII-2	chrVII	884098	884168	+	912.1	0.705	NA	NA	-323	YGR192C_mRNA	YGR192C	YGR192C_mRNA			YGR192C			
-chrXVI-5	chrXVI	503039	503109	+	889.2	0.690	NA	NA	-44	YPL025C_mRNA	YPL025C	YPL025C_mRNA			YPL025C			
-chrXVI-2	chrXVI	432054	432124	+	880.6	0.637	NA	NA	194	YPL062W_mRNA	YPL062W	YPL062W_mRNA			YPL062W			
-chrI-1	chrI	29876	29946	+	869.2	0.712	NA	NA	-1656	YAL062W_mRNA	YAL062W	YAL062W_mRNA			YAL062W			
-chrIV-2	chrIV	1525542	1525612	+	849.2	0.700	NA	NA	-54	YDR544C_mRNA	YDR544C	YDR544C_mRNA			YDR544C			
-chrXIV-3	chrXIV	301927	301997	+	800.6	0.558	NA	NA	-718	YNL178W_mRNA	YNL178W	YNL178W_mRNA			YNL178W			
-chrXVI-3	chrXVI	431825	431895	+	794.9	0.682	NA	NA	-35	YPL062W_mRNA	YPL062W	YPL062W_mRNA			YPL062W			
-chrVII-4	chrVII	384939	385009	+	792.0	0.702	NA	NA	-222	YGL062W_mRNA	YGL062W	YGL062W_mRNA			YGL062W			
-chrV-1	chrV	85046	85116	+	792.0	0.637	NA	NA	464	YEL035C_mRNA	YEL035C	YEL035C_mRNA			YEL035C			
-chrXIII-4	chrXIII	5430	5500	+	774.9	0.710	NA	NA	-781	YML133C_mRNA	YML133C	YML133C_mRNA			YML133C			
-chrXII-46	chrXII	5524	5594	+	734.8	0.673	NA	NA	-46	YLL066W-B_mRNA	YLL066W-B	YLL066W-B_mRNA			YLL066W-B			
-chrIX-3	chrIX	22340	22410	+	729.1	0.654	NA	NA	2528	YIL170W	YIL170W	YIL170W			YIL170W			NA
-chrXI-2	chrXI	356097	356167	+	723.4	0.647	NA	NA	-190	YKL044W_mRNA	YKL044W	YKL044W_mRNA			YKL044W			
-chrX-4	chrX	68984	69054	+	720.5	0.748	NA	NA	-237	YJL196C_mRNA	YJL196C	YJL196C_mRNA			YJL196C			
-chrII-1	chrII	5721	5791	+	714.8	0.770	NA	NA	-34	YBL109W_mRNA	YBL109W	YBL109W_mRNA			YBL109W			
-chrXI-3	chrXI	518229	518299	+	697.7	0.711	NA	NA	66	YKR041W_mRNA	YKR041W	YKR041W_mRNA			YKR041W			
-chrXVI-4	chrXVI	6435	6505	+	689.1	0.736	NA	NA	-463	YPL283C_mRNA	YPL283C	YPL283C_mRNA			YPL283C			
-chrXII-45	chrXII	368396	368466	+	677.6	0.670	NA	NA	-307	YLR108C_mRNA	YLR108C	YLR108C_mRNA			YLR108C			
-chrXII-47	chrXII	370976	371046	+	643.3	0.692	NA	NA	220	YLR112W_mRNA	YLR112W	YLR112W_mRNA			YLR112W			
-chrXIV-5	chrXIV	301270	301340	+	637.6	0.686	NA	NA	-202	YNL179C_mRNA	YNL179C	YNL179C_mRNA			YNL179C			
-chrXV-4	chrXV	232117	232187	+	637.6	0.582	NA	NA	-397	YOL052C-A_mRNA	YOL052C-A	YOL052C-A_mRNA			YOL052C-A			
-chrXII-49	chrXII	1071646	1071716	+	623.3	0.707	NA	NA	29	YLR466C-B_mRNA	YLR466C-B	YLR466C-B_mRNA			YLR466C-B			
-chrXIV-4	chrXIV	559483	559553	+	617.6	0.653	NA	NA	-296	YNL036W_mRNA	YNL036W	YNL036W_mRNA			YNL036W			
-chrIV-3	chrIV	976575	976645	+	609.0	0.582	NA	NA	619	YDR260C_mRNA	YDR260C	YDR260C_mRNA			YDR260C			
-chrIV-4	chrIV	1345400	1345470	+	606.2	0.741	NA	NA	-212	YDR442W_mRNA	YDR442W	YDR442W_mRNA			YDR442W			
-chrII-2	chrII	371056	371126	+	603.3	0.660	NA	NA	-392	YBR066C_mRNA	YBR066C	YBR066C_mRNA			YBR066C			
-chrXIV-6	chrXIV	441097	441167	+	600.4	0.668	NA	NA	-213	YNL097C-B_mRNA	YNL097C-B	YNL097C-B_mRNA			YNL097C-B			
-chrXV-5	chrXV	988500	988570	+	586.1	0.628	NA	NA	247	YOR348C_mRNA	YOR348C	YOR348C_mRNA			YOR348C			
-chrXI-4	chrXI	355897	355967	+	574.7	0.624	NA	NA	-390	YKL044W_mRNA	YKL044W	YKL044W_mRNA			YKL044W			
-chrXIII-9	chrXIII	287659	287729	+	566.1	0.635	NA	NA	-385	YMR011W_mRNA	YMR011W	YMR011W_mRNA			YMR011W			
-chrVII-5	chrVII	483205	483275	+	560.4	0.522	NA	NA	-20	YGL007W_mRNA	YGL007W	YGL007W_mRNA			YGL007W			
-chrXII-50	chrXII	1065206	1065276	+	554.7	0.738	NA	NA	-715	YLR462W_mRNA	YLR462W	YLR462W_mRNA			YLR462W			
-chrXIII-5	chrXIII	510984	511054	+	554.7	0.643	NA	NA	56	YMR122C_mRNA	YMR122C	YMR122C_mRNA			YMR122C			
-chrVIII-1	chrVIII	557013	557083	+	554.7	0.607	NA	NA	-6	YHR217C_mRNA	YHR217C	YHR217C_mRNA			YHR217C			
-chrXII-51	chrXII	1071811	1071881	+	554.7	0.585	NA	NA	-136	YLR466C-B_mRNA	YLR466C-B	YLR466C-B_mRNA			YLR466C-B			
-chrXIV-7	chrXIV	739377	739447	+	546.1	0.681	NA	NA	-539	YNR060W_mRNA	YNR060W	YNR060W_mRNA			YNR060W			
-chrXI-6	chrXI	518903	518973	+	546.1	0.575	NA	NA	-372	YKR040C_mRNA	YKR040C	YKR040C_mRNA			YKR040C			
-chrXV-6	chrXV	904210	904280	+	546.1	0.626	NA	NA	-213	YOR314W-A_mRNA	YOR314W-A	YOR314W-A_mRNA			YOR314W-A			
-chrXI-5	chrXI	518670	518740	+	531.8	0.535	NA	NA	-139	YKR040C_mRNA	YKR040C	YKR040C_mRNA			YKR040C			
-chrXIII-10	chrXIII	302800	302870	+	529.0	0.687	NA	NA	-350	YMR015C_mRNA	YMR015C	YMR015C_mRNA			YMR015C			
-chrX-5	chrX	220358	220428	+	517.5	0.635	NA	NA	-377	YJL107C_mRNA	YJL107C	YJL107C_mRNA			YJL107C			
-chrVI-2	chrVI	4563	4633	+	517.5	0.786	NA	NA	-468	YFL063W_mRNA	YFL063W	YFL063W_mRNA			YFL063W			
-chrXIII-8	chrXIII	347163	347233	+	517.5	0.759	NA	NA	-681	YMR037C_mRNA	YMR037C	YMR037C_mRNA			YMR037C			
-chrXIII-11	chrXIII	287342	287412	+	514.7	0.584	NA	NA	-702	YMR011W_mRNA	YMR011W	YMR011W_mRNA			YMR011W			
-chrV-2	chrV	85347	85417	+	514.7	0.556	NA	NA	163	YEL035C_mRNA	YEL035C	YEL035C_mRNA			YEL035C			
-chrVII-6	chrVII	23341	23411	+	511.8	0.651	NA	NA	-559	YGL253W_mRNA	YGL253W	YGL253W_mRNA			YGL253W			
-chrXIII-6	chrXIII	557196	557266	+	506.1	0.655	NA	NA	-756	YMR145C_mRNA	YMR145C	YMR145C_mRNA			YMR145C			
-chrXIII-7	chrXIII	653215	653285	+	500.4	0.616	NA	NA	-114	YMR194C-A_mRNA	YMR194C-A	YMR194C-A_mRNA			YMR194C-A			
-chrV-3	chrV	268582	268652	+	500.4	0.653	NA	NA	-504	YER056C_mRNA	YER056C	YER056C_mRNA			YER056C			
-chrXII-52	chrXII	950792	950862	+	497.5	0.671	NA	NA	-329	YLR413W_mRNA	YLR413W	YLR413W_mRNA			YLR413W			
-chrVII-7	chrVII	702959	703029	+	497.5	0.643	NA	NA	327	YGR107W_mRNA	YGR107W	YGR107W_mRNA			YGR107W			
-chrX-6	chrX	525934	526004	+	494.6	0.661	NA	NA	-366	YJR048W_mRNA	YJR048W	YJR048W_mRNA			YJR048W			
-chrIV-8	chrIV	599938	600008	+	491.8	0.598	NA	NA	-820	YDR077W_mRNA	YDR077W	YDR077W_mRNA			YDR077W			
-chrIV-7	chrIV	539067	539137	+	488.9	0.569	NA	NA	-635	YDR040C_mRNA	YDR040C	YDR040C_mRNA			YDR040C			
-chrV-4	chrV	123288	123358	+	486.1	0.680	NA	NA	-334	YEL017W_mRNA	YEL017W	YEL017W_mRNA			YEL017W			
-chrXII-53	chrXII	809337	809407	+	483.2	0.552	NA	NA	-625	YLR342W_mRNA	YLR342W	YLR342W_mRNA			YLR342W			
-chrXV-7	chrXV	383004	383074	+	483.2	0.677	NA	NA	1381	YOR028C_mRNA	YOR028C	YOR028C_mRNA			YOR028C			
-chrXIII-12	chrXIII	915241	915311	+	477.5	0.673	NA	NA	-738	YMR319C_mRNA	YMR319C	YMR319C_mRNA			YMR319C			
-chrIV-6	chrIV	132868	132938	+	468.9	0.591	NA	NA	-534	YDL182W_mRNA	YDL182W	YDL182W_mRNA			YDL182W			
-chrII-3	chrII	136042	136112	+	468.9	0.734	NA	NA	79	YBL044W_mRNA	YBL044W	YBL044W_mRNA			YBL044W			
-chrXIII-13	chrXIII	798031	798101	+	466.1	0.656	NA	NA	-141	YMR265C_mRNA	YMR265C	YMR265C_mRNA			YMR265C			
-chrXV-8	chrXV	384987	385057	+	463.2	0.724	NA	NA	422	YOR029W_mRNA	YOR029W	YOR029W_mRNA			YOR029W			
-chrXVI-6	chrXVI	214926	214996	+	460.3	0.547	NA	NA	-999	YPL177C_mRNA	YPL177C	YPL177C_mRNA			YPL177C			
-chrXVI-10	chrXVI	829347	829417	+	457.5	0.652	NA	NA	-536	YPR149W_mRNA	YPR149W	YPR149W_mRNA			YPR149W			
-chrVII-10	chrVII	809907	809977	+	457.5	0.604	NA	NA	-285	YGR161W-C_mRNA	YGR161W-C	YGR161W-C_mRNA			YGR161W-C			
-chrIX-4	chrIX	254496	254566	+	454.6	0.611	NA	NA	-12	YIL054W_mRNA	YIL054W	YIL054W_mRNA			YIL054W			
-chrXVI-9	chrXVI	645762	645832	+	451.8	0.618	NA	NA	-153	YPR036W-A_mRNA	YPR036W-A	YPR036W-A_mRNA			YPR036W-A			
-chrVII-9	chrVII	987505	987575	+	451.8	0.544	NA	NA	-509	YGR249W_mRNA	YGR249W	YGR249W_mRNA			YGR249W			
-chrXIV-9	chrXIV	301051	301121	+	451.8	0.693	NA	NA	17	YNL179C_mRNA	YNL179C	YNL179C_mRNA			YNL179C			
-chrXIV-8	chrXIV	662191	662261	+	448.9	0.631	NA	NA	-687	YNR017W_mRNA	YNR017W	YNR017W_mRNA			YNR017W			
-chrXVI-8	chrXVI	527045	527115	+	446.0	0.646	NA	NA	-197	YPL015C_mRNA	YPL015C	YPL015C_mRNA			YPL015C			
-chrII-5	chrII	555971	556041	+	440.3	0.645	NA	NA	-543	YBR158W_mRNA	YBR158W	YBR158W_mRNA			YBR158W			
-chrXIII-14	chrXIII	906042	906112	+	440.3	0.712	NA	NA	-104	YMR316C-A_mRNA	YMR316C-A	YMR316C-A_mRNA			YMR316C-A			
-chrXVI-7	chrXVI	502522	502592	+	437.5	0.620	NA	NA	-374	YPL026C_mRNA	YPL026C	YPL026C_mRNA			YPL026C			
-chrXV-11	chrXV	882199	882269	+	434.6	0.671	NA	NA	-531	YOR302W_mRNA	YOR302W	YOR302W_mRNA			YOR302W			
-chrVII-12	chrVII	610037	610107	+	434.6	0.616	NA	NA	488	snR48_snoRNA	snR48	snR48_snoRNA			snR48			
-chrII-4	chrII	554768	554838	+	431.7	0.674	NA	NA	-493	YBR157C_mRNA	YBR157C	YBR157C_mRNA			YBR157C			
-chrXVI-13	chrXVI	340729	340799	+	431.7	0.648	NA	NA	820	YPL111W_mRNA	YPL111W	YPL111W_mRNA			YPL111W			
-chrXVI-11	chrXVI	502838	502908	+	428.9	0.601	NA	NA	157	YPL025C_mRNA	YPL025C	YPL025C_mRNA			YPL025C			
-chrXV-10	chrXV	978826	978896	+	426.0	0.504	NA	NA	-792	YOR344C_mRNA	YOR344C	YOR344C_mRNA			YOR344C			
-chrXIII-15	chrXIII	472936	473006	+	423.2	0.657	NA	NA	293	YMR103C_mRNA	YMR103C	YMR103C_mRNA			YMR103C			
-chrXVI-12	chrXVI	193164	193234	+	420.3	0.645	NA	NA	-449	YPL187W_mRNA	YPL187W	YPL187W_mRNA			YPL187W			
-chrIV-9	chrIV	546176	546246	+	420.3	0.644	NA	NA	-431	YDR044W_mRNA	YDR044W	YDR044W_mRNA			YDR044W			
-chrVIII-2	chrVIII	122465	122535	+	417.4	0.612	NA	NA	265	YHR007C-A_mRNA	YHR007C-A	YHR007C-A_mRNA			YHR007C-A			
-chrXVI-15	chrXVI	40412	40482	+	408.9	0.615	NA	NA	-596	YPL265W_mRNA	YPL265W	YPL265W_mRNA			YPL265W			
-chrIV-12	chrIV	1469012	1469082	+	406.0	0.729	NA	NA	-353	YDR510W_mRNA	YDR510W	YDR510W_mRNA			YDR510W			
-chrV-6	chrV	284828	284898	+	406.0	0.644	NA	NA	-641	YER064C_mRNA	YER064C	YER064C_mRNA			YER064C			
-chrIV-10	chrIV	387043	387113	+	406.0	0.664	NA	NA	-1491	YDL037C_mRNA	YDL037C	YDL037C_mRNA			YDL037C			
-chrIV-11	chrIV	507455	507525	+	403.2	0.708	NA	NA	-657	YDR033W_mRNA	YDR033W	YDR033W_mRNA			YDR033W			
-chrXVI-17	chrXVI	566932	567002	+	403.2	0.727	NA	NA	-296	YPR005C_mRNA	YPR005C	YPR005C_mRNA			YPR005C			
-chrVII-13	chrVII	413410	413480	+	400.3	0.748	NA	NA	-657	YGL045W_mRNA	YGL045W	YGL045W_mRNA			YGL045W			
-chrXIII-16	chrXIII	388176	388246	+	400.3	0.582	NA	NA	33	YMR056C_mRNA	YMR056C	YMR056C_mRNA			YMR056C			
-chrV-5	chrV	570491	570561	+	397.4	0.625	NA	NA	-619	YER188C-A_mRNA	YER188C-A	YER188C-A_mRNA			YER188C-A			
-chrVII-11	chrVII	592890	592960	+	394.6	0.558	NA	NA	304	YGR051C_mRNA	YGR051C	YGR051C_mRNA			YGR051C			
-chrXI-7	chrXI	355633	355703	+	394.6	0.532	NA	NA	-654	YKL044W_mRNA	YKL044W	YKL044W_mRNA			YKL044W			
-chrXV-13	chrXV	987995	988065	+	394.6	0.544	NA	NA	752	YOR348C_mRNA	YOR348C	YOR348C_mRNA			YOR348C			
-chrXVI-19	chrXVI	739665	739735	+	388.9	0.618	NA	NA	-131	YPR105C_mRNA	YPR105C	YPR105C_mRNA			YPR105C			
-chrXVI-18	chrXVI	591347	591417	+	388.9	0.674	NA	NA	-356	YPR015C_mRNA	YPR015C	YPR015C_mRNA			YPR015C			
-chrXI-8	chrXI	99674	99744	+	388.9	0.623	NA	NA	-962	YKL182W_mRNA	YKL182W	YKL182W_mRNA			YKL182W			
-chrVI-3	chrVI	183142	183212	+	388.9	0.739	NA	NA	-316	YFR017C_mRNA	YFR017C	YFR017C_mRNA			YFR017C			
-chrVII-16	chrVII	785869	785939	+	383.1	0.682	NA	NA	-467	YGR146C-A_mRNA	YGR146C-A	YGR146C-A_mRNA			YGR146C-A			
-chrII-7	chrII	140586	140656	+	383.1	0.643	NA	NA	-361	YBL042C_mRNA	YBL042C	YBL042C_mRNA			YBL042C			
-chrIV-15	chrIV	543807	543877	+	383.1	0.656	NA	NA	-473	YDR043C_mRNA	YDR043C	YDR043C_mRNA			YDR043C			
-chrXV-14	chrXV	882493	882563	+	380.3	0.734	NA	NA	-237	YOR302W_mRNA	YOR302W	YOR302W_mRNA			YOR302W			
-chrXV-16	chrXV	168058	168128	+	380.3	0.683	NA	NA	-634	YOL082W_mRNA	YOL082W	YOL082W_mRNA			YOL082W			
-chrIV-13	chrIV	550920	550990	+	380.3	0.718	NA	NA	-379	YDR046C_mRNA	YDR046C	YDR046C_mRNA			YDR046C			
-chrII-8	chrII	561132	561202	+	377.4	0.850	NA	NA	-467	YBR161W_mRNA	YBR161W	YBR161W_mRNA			YBR161W			
-chrIV-14	chrIV	730409	730479	+	377.4	0.899	NA	NA	-134	YDR138W_mRNA	YDR138W	YDR138W_mRNA			YDR138W			
-chrXIII-18	chrXIII	388411	388481	+	374.6	0.567	NA	NA	-202	YMR056C_mRNA	YMR056C	YMR056C_mRNA			YMR056C			
-chrXVI-14	chrXVI	645247	645317	+	374.6	0.597	NA	NA	-668	YPR036W-A_mRNA	YPR036W-A	YPR036W-A_mRNA			YPR036W-A			
-chrXI-9	chrXI	514589	514659	+	374.6	0.614	NA	NA	-439	YKR039W_mRNA	YKR039W	YKR039W_mRNA			YKR039W			
-chrIV-16	chrIV	721740	721810	+	374.6	0.710	NA	NA	-478	YDR133C_mRNA	YDR133C	YDR133C_mRNA			YDR133C			
-chrV-7	chrV	284616	284686	+	371.7	0.594	NA	NA	-429	YER064C_mRNA	YER064C	YER064C_mRNA			YER064C			
-chrXII-55	chrXII	370379	370449	+	371.7	0.641	NA	NA	23	YLR111W_mRNA	YLR111W	YLR111W_mRNA			YLR111W			
-chrIII-2	chrIII	78269	78339	+	371.7	0.723	NA	NA	-385	YCL025C_mRNA	YCL025C	YCL025C_mRNA			YCL025C			
-chrXVI-16	chrXVI	297022	297092	+	368.8	0.635	NA	NA	-410	YPL137C_mRNA	YPL137C	YPL137C_mRNA			YPL137C			
-chrVIII-3	chrVIII	296906	296976	+	360.3	0.697	NA	NA	-494	YHR096C_mRNA	YHR096C	YHR096C_mRNA			YHR096C			
-chrV-9	chrV	303501	303571	+	360.3	0.498	NA	NA	-494	YER073W_mRNA	YER073W	YER073W_mRNA			YER073W			
-chrVII-18	chrVII	324053	324123	+	357.4	0.630	NA	NA	-1243	YGL096W_mRNA	YGL096W	YGL096W_mRNA			YGL096W			
-chrIII-1	chrIII	122758	122828	+	357.4	0.660	NA	NA	210	YCR006C_mRNA	YCR006C	YCR006C_mRNA			YCR006C			
-chrVII-17	chrVII	592592	592662	+	357.4	0.524	NA	NA	-185	YGR050C_mRNA	YGR050C	YGR050C_mRNA			YGR050C			
-chrXIII-19	chrXIII	798256	798326	+	351.7	0.638	NA	NA	-227	YMR266W_mRNA	YMR266W	YMR266W_mRNA			YMR266W			
-chrV-8	chrV	141027	141097	+	348.8	0.630	NA	NA	-244	YEL008C-A_mRNA	YEL008C-A	YEL008C-A_mRNA			YEL008C-A			
-chrVII-20	chrVII	650946	651016	+	348.8	0.682	NA	NA	-364	YGR086C_mRNA	YGR086C	YGR086C_mRNA			YGR086C			
-chrXV-20	chrXV	1043233	1043303	+	346.0	0.616	NA	NA	77	YOR376W_mRNA	YOR376W	YOR376W_mRNA			YOR376W			
-chrXV-19	chrXV	109768	109838	+	346.0	0.536	NA	NA	-494	YOL109W_mRNA	YOL109W	YOL109W_mRNA			YOL109W			
-chrXVI-23	chrXVI	453769	453839	+	346.0	0.702	NA	NA	-69	YPL056C_mRNA	YPL056C	YPL056C_mRNA			YPL056C			
-chrV-11	chrV	569587	569657	+	343.1	0.616	NA	NA	285	YER188C-A_mRNA	YER188C-A	YER188C-A_mRNA			YER188C-A			
-chrXIII-21	chrXIII	653026	653096	+	343.1	0.570	NA	NA	75	YMR194C-A_mRNA	YMR194C-A	YMR194C-A_mRNA			YMR194C-A			
-chrV-12	chrV	77686	77756	+	340.2	0.635	NA	NA	-332	YEL040W_mRNA	YEL040W	YEL040W_mRNA			YEL040W			
-chrXV-21	chrXV	285768	285838	+	340.2	0.656	NA	NA	-369	YOL020W_mRNA	YOL020W	YOL020W_mRNA			YOL020W			
-chrXIII-23	chrXIII	653447	653517	+	337.4	0.619	NA	NA	-346	YMR194C-A_mRNA	YMR194C-A	YMR194C-A_mRNA			YMR194C-A			
-chrIV-18	chrIV	357337	357407	+	337.4	0.708	NA	NA	-613	YDL055C_mRNA	YDL055C	YDL055C_mRNA			YDL055C			
-chrXV-17	chrXV	742443	742513	+	337.4	0.704	NA	NA	-432	YOR212W_mRNA	YOR212W	YOR212W_mRNA			YOR212W			
-chrXIII-20	chrXIII	852308	852378	+	334.5	0.664	NA	NA	-287	YMR291W_mRNA	YMR291W	YMR291W_mRNA			YMR291W			
-chrI-4	chrI	71412	71482	+	334.5	0.699	NA	NA	-339	YAL038W_mRNA	YAL038W	YAL038W_mRNA			YAL038W			
-chrXVI-25	chrXVI	455230	455300	+	334.5	0.723	NA	NA	-275	YPL055C_mRNA	YPL055C	YPL055C_mRNA			YPL055C			
-chrIV-19	chrIV	369096	369166	+	331.7	0.730	NA	NA	-640	YDL047W_mRNA	YDL047W	YDL047W_mRNA			YDL047W			
-chrXVI-24	chrXVI	280175	280245	+	331.7	0.661	NA	NA	-270	YPL144W_mRNA	YPL144W	YPL144W_mRNA			YPL144W			
-chrXII-59	chrXII	954929	954999	+	331.7	0.762	NA	NA	-46	YLR417W_mRNA	YLR417W	YLR417W_mRNA			YLR417W			
-chrVII-19	chrVII	905413	905483	+	328.8	0.770	NA	NA	211	YGR203W_mRNA	YGR203W	YGR203W_mRNA			YGR203W			
-chrIII-4	chrIII	123862	123932	+	323.1	0.629	NA	NA	-249	tP(AGG)C_tRNA	tP(AGG)C	tP(AGG)C_tRNA			tP(AGG)C			
-chrXI-12	chrXI	231649	231719	+	320.2	0.668	NA	NA	-543	YKL109W_mRNA	YKL109W	YKL109W_mRNA			YKL109W			
-chrIV-21	chrIV	1468734	1468804	+	320.2	0.549	NA	NA	-325	YDR508C_mRNA	YDR508C	YDR508C_mRNA			YDR508C			
-chrXV-18	chrXV	989489	989559	+	320.2	0.661	NA	NA	-265	YOR349W_mRNA	YOR349W	YOR349W_mRNA			YOR349W			
-chrXV-22	chrXV	520644	520714	+	320.2	0.596	NA	NA	-674	YOR107W_mRNA	YOR107W	YOR107W_mRNA			YOR107W			
-chrXII-57	chrXII	636309	636379	+	317.4	0.720	NA	NA	-436	YLR249W_mRNA	YLR249W	YLR249W_mRNA			YLR249W			
-chrIV-22	chrIV	1080762	1080832	+	317.4	0.663	NA	NA	-598	YDR309C_mRNA	YDR309C	YDR309C_mRNA			YDR309C			
-chrXI-11	chrXI	230669	230739	+	314.5	0.571	NA	NA	-824	YKL110C_mRNA	YKL110C	YKL110C_mRNA			YKL110C			
-chrVII-23	chrVII	1000286	1000356	+	314.5	0.528	NA	NA	-606	YGR254W_mRNA	YGR254W	YGR254W_mRNA			YGR254W			
-chrII-11	chrII	375943	376013	+	311.7	0.570	NA	NA	-288	YBR068C_mRNA	YBR068C	YBR068C_mRNA			YBR068C			
-chrXIII-22	chrXIII	661928	661998	+	311.7	0.567	NA	NA	-681	YMR199W_mRNA	YMR199W	YMR199W_mRNA			YMR199W			
-chrXIV-13	chrXIV	355443	355513	+	308.8	0.672	NA	NA	-436	YNL144C_mRNA	YNL144C	YNL144C_mRNA			YNL144C			
-chrXIV-12	chrXIV	498644	498714	+	308.8	0.708	NA	NA	141	YNL067W-A_mRNA	YNL067W-A	YNL067W-A_mRNA			YNL067W-A			
-chrXV-28	chrXV	27647	27717	+	305.9	0.508	NA	NA	598	YOL155W-A_mRNA	YOL155W-A	YOL155W-A_mRNA			YOL155W-A			
-chrIV-24	chrIV	636179	636249	+	303.1	0.642	NA	NA	313	YDR095C_mRNA	YDR095C	YDR095C_mRNA			YDR095C			
-chrXVI-28	chrXVI	425623	425693	+	303.1	0.656	NA	NA	189	YPL067C_mRNA	YPL067C	YPL067C_mRNA			YPL067C			
-chrXVI-33	chrXVI	840714	840784	+	303.1	0.634	NA	NA	-517	YPR157W_mRNA	YPR157W	YPR157W_mRNA			YPR157W			
-chrV-14	chrV	242321	242391	+	303.1	0.738	NA	NA	-824	YER046W_mRNA	YER046W	YER046W_mRNA			YER046W			
-chrXIII-25	chrXIII	653731	653801	+	303.1	0.651	NA	NA	-268	YMR195W_mRNA	YMR195W	YMR195W_mRNA			YMR195W			
-chrVII-25	chrVII	809674	809744	+	303.1	0.715	NA	NA	-289	YGR161C_mRNA	YGR161C	YGR161C_mRNA			YGR161C			
-chrXVI-32	chrXVI	297347	297417	+	297.4	0.610	NA	NA	-171	YPL135W_mRNA	YPL135W	YPL135W_mRNA			YPL135W			
-chrVII-24	chrVII	987062	987132	+	297.4	0.629	NA	NA	-952	YGR249W_mRNA	YGR249W	YGR249W_mRNA			YGR249W			
-chrXIII-26	chrXIII	287042	287112	+	294.5	0.609	NA	NA	-1002	YMR011W_mRNA	YMR011W	YMR011W_mRNA			YMR011W			
-chrXI-14	chrXI	615009	615079	+	294.5	0.607	NA	NA	-686	YKR093W_mRNA	YKR093W	YKR093W_mRNA			YKR093W			
-chrII-13	chrII	476731	476801	+	291.6	0.719	NA	NA	-329	YBR117C_mRNA	YBR117C	YBR117C_mRNA			YBR117C			
-chrXVI-21	chrXVI	38639	38709	+	285.9	0.650	NA	NA	-447	YPL266W_mRNA	YPL266W	YPL266W_mRNA			YPL266W			
-chrII-12	chrII	419351	419421	+	285.9	0.582	NA	NA	-222	YBR085C-A_mRNA	YBR085C-A	YBR085C-A_mRNA			YBR085C-A			
-chrV-15	chrV	268425	268495	+	285.9	0.659	NA	NA	-347	YER056C_mRNA	YER056C	YER056C_mRNA			YER056C			
-chrXIV-16	chrXIV	576244	576314	+	285.9	0.611	NA	NA	-229	YNL031C_mRNA	YNL031C	YNL031C_mRNA			YNL031C			
-chrV-17	chrV	335507	335577	+	285.9	0.733	NA	NA	-354	YER088C_mRNA	YER088C	YER088C_mRNA			YER088C			
-chrXV-30	chrXV	21397	21467	+	283.1	0.667	NA	NA	-121	YOL158C_mRNA	YOL158C	YOL158C_mRNA			YOL158C			
-chrVII-32	chrVII	620064	620134	+	283.1	0.729	NA	NA	-241	YGR065C_mRNA	YGR065C	YGR065C_mRNA			YGR065C			
-chrXIII-30	chrXIII	362253	362323	+	280.2	0.569	NA	NA	339	YMR046C	YMR046C	YMR046C			YMR046C			NA
-chrII-16	chrII	466380	466450	+	280.2	0.623	NA	NA	-645	YBR112C_mRNA	YBR112C	YBR112C_mRNA			YBR112C			
-chrII-14	chrII	165082	165152	+	277.3	0.594	NA	NA	-345	YBL029C-A_mRNA	YBL029C-A	YBL029C-A_mRNA			YBL029C-A			
-chrVII-31	chrVII	428135	428205	+	271.6	0.799	NA	NA	-223	YGL037C_mRNA	YGL037C	YGL037C_mRNA			YGL037C			
-chrXII-66	chrXII	36849	36919	+	268.8	0.703	NA	NA	-523	YLL052C_mRNA	YLL052C	YLL052C_mRNA			YLL052C			
-chrXII-68	chrXII	187565	187635	+	268.8	0.625	NA	NA	-471	YLR023C_mRNA	YLR023C	YLR023C_mRNA			YLR023C			
-chrII-15	chrII	350962	351032	+	265.9	0.839	NA	NA	170	tQ(UUG)B_tRNA	tQ(UUG)B	tQ(UUG)B_tRNA			tQ(UUG)B			
-chrX-11	chrX	294703	294773	+	265.9	0.621	NA	NA	-61	YJL077W-A_mRNA	YJL077W-A	YJL077W-A_mRNA			YJL077W-A			
-chrV-19	chrV	260128	260198	+	263.0	0.781	NA	NA	-524	YER053C_mRNA	YER053C	YER053C_mRNA			YER053C			
-chrXIII-33	chrXIII	556916	556986	+	263.0	0.545	NA	NA	-476	YMR145C_mRNA	YMR145C	YMR145C_mRNA			YMR145C			
-chrXI-18	chrXI	382206	382276	+	263.0	0.619	NA	NA	169	YKL031W_mRNA	YKL031W	YKL031W_mRNA			YKL031W			
-chrXVI-36	chrXVI	585994	586064	+	263.0	0.570	NA	NA	-444	YPR013C_mRNA	YPR013C	YPR013C_mRNA			YPR013C			
-chrII-19	chrII	221376	221446	+	260.2	0.652	NA	NA	81	YBL005W-A	YBL005W-A	YBL005W-A			YBL005W-A			NA
-chrIV-31	chrIV	1080486	1080556	+	260.2	0.761	NA	NA	-322	YDR309C_mRNA	YDR309C	YDR309C_mRNA			YDR309C			
-chrIX-10	chrIX	139393	139463	+	260.2	0.643	NA	NA	-324	YIL118W_mRNA	YIL118W	YIL118W_mRNA			YIL118W			
-chrVI-6	chrVI	176654	176724	+	260.2	0.623	NA	NA	-298	YFR015C_mRNA	YFR015C	YFR015C_mRNA			YFR015C			
-chrIX-14	chrIX	169837	169907	+	260.2	0.852	NA	NA	-231	YIL105C_mRNA	YIL105C	YIL105C_mRNA			YIL105C			
-chrXVI-38	chrXVI	641721	641791	+	257.3	0.573	NA	NA	-452	YPR035W_mRNA	YPR035W	YPR035W_mRNA			YPR035W			
-chrVII-36	chrVII	959532	959602	+	257.3	0.662	NA	NA	-337	YGR234W_mRNA	YGR234W	YGR234W_mRNA			YGR234W			
-chrXI-23	chrXI	329562	329632	+	245.9	0.827	NA	NA	-154	YKL059C_mRNA	YKL059C	YKL059C_mRNA			YKL059C			
-chrXIV-17	chrXIV	500680	500750	+	245.9	0.662	NA	NA	-800	YNL066W_mRNA	YNL066W	YNL066W_mRNA			YNL066W			
-chrV-25	chrV	311583	311653	+	243.0	0.652	NA	NA	-419	YER075C_mRNA	YER075C	YER075C_mRNA			YER075C			
-chrI-7	chrI	71018	71088	+	243.0	0.708	NA	NA	-733	YAL038W_mRNA	YAL038W	YAL038W_mRNA			YAL038W			
-chrXIV-22	chrXIV	662497	662567	+	240.2	0.596	NA	NA	-381	YNR017W_mRNA	YNR017W	YNR017W_mRNA			YNR017W			
-chrIV-37	chrIV	1490215	1490285	+	240.2	0.647	NA	NA	-260	YDR524C-A_mRNA	YDR524C-A	YDR524C-A_mRNA			YDR524C-A			
-chrXV-40	chrXV	216615	216685	+	240.2	0.695	NA	NA	-476	YOL059W_mRNA	YOL059W	YOL059W_mRNA			YOL059W			
-chrXII-69	chrXII	723520	723590	+	240.2	0.804	NA	NA	-489	YLR297W_mRNA	YLR297W	YLR297W_mRNA			YLR297W			
-chrXV-43	chrXV	218722	218792	+	237.3	0.740	NA	NA	-454	YOL058W_mRNA	YOL058W	YOL058W_mRNA			YOL058W			
-chrV-23	chrV	117826	117896	+	237.3	0.585	NA	NA	174	RPR1_ncRNA	RPR1	RPR1_ncRNA			RPR1			
-chrX-13	chrX	663122	663192	+	237.3	0.648	NA	NA	-98	YJR127C_mRNA	YJR127C	YJR127C_mRNA			YJR127C			
-chrIX-16	chrIX	249069	249139	+	237.3	0.703	NA	NA	254	tS(UGA)I_tRNA	tS(UGA)I	tS(UGA)I_tRNA			tS(UGA)I			
-chrX-15	chrX	268405	268475	+	234.5	0.550	NA	NA	-359	YJL088W_mRNA	YJL088W	YJL088W_mRNA			YJL088W			
-chrVII-40	chrVII	1000522	1000592	+	234.5	0.639	NA	NA	-370	YGR254W_mRNA	YGR254W	YGR254W_mRNA			YGR254W			
-chrII-27	chrII	221657	221727	+	231.6	0.505	NA	NA	362	YBL005W-A	YBL005W-A	YBL005W-A			YBL005W-A			NA
-chrX-16	chrX	123578	123648	+	231.6	0.669	NA	NA	-665	YJL158C_mRNA	YJL158C	YJL158C_mRNA			YJL158C			
-chrIV-40	chrIV	234464	234534	+	231.6	0.618	NA	NA	-428	YDL127W_mRNA	YDL127W	YDL127W_mRNA			YDL127W			
-chrXI-20	chrXI	382004	382074	+	231.6	0.609	NA	NA	-33	YKL031W_mRNA	YKL031W	YKL031W_mRNA			YKL031W			
-chrXII-79	chrXII	950350	950420	+	228.7	0.641	NA	NA	88	YLR412C-A_mRNA	YLR412C-A	YLR412C-A_mRNA			YLR412C-A			
-chrXVI-43	chrXVI	576140	576210	+	225.9	0.788	NA	NA	-377	YPR009W_mRNA	YPR009W	YPR009W_mRNA			YPR009W			
-chrVIII-11	chrVIII	236332	236402	+	225.9	0.658	NA	NA	145	YHR070C-A_mRNA	YHR070C-A	YHR070C-A_mRNA			YHR070C-A			
-chrXIII-38	chrXIII	353128	353198	+	217.3	0.585	NA	NA	560	YMR042W_mRNA	YMR042W	YMR042W_mRNA			YMR042W			
-chrVII-48	chrVII	271505	271575	+	217.3	0.620	NA	NA	543	YGL126W_mRNA	YGL126W	YGL126W_mRNA			YGL126W			
-chrVII-44	chrVII	766398	766468	+	217.3	0.647	NA	NA	707	YGR139W_mRNA	YGR139W	YGR139W_mRNA			YGR139W			
-chrXV-41	chrXV	670982	671052	+	217.3	0.613	NA	NA	-776	YOR178C_mRNA	YOR178C	YOR178C_mRNA			YOR178C			
-chrVII-49	chrVII	404859	404929	+	214.4	0.932	NA	NA	-576	tR(UCU)G1_tRNA	tR(UCU)G1	tR(UCU)G1_tRNA			tR(UCU)G1			
-chrXVI-48	chrXVI	74964	75034	+	214.4	0.788	NA	NA	-280	YPL250C_mRNA	YPL250C	YPL250C_mRNA			YPL250C			
-chrX-20	chrX	639622	639692	+	211.6	0.702	NA	NA	-285	YJR115W_mRNA	YJR115W	YJR115W_mRNA			YJR115W			
-chrVII-47	chrVII	20586	20656	+	208.7	0.581	NA	NA	-357	YGL255W_mRNA	YGL255W	YGL255W_mRNA			YGL255W			
-chrI-9	chrI	68177	68247	+	208.7	0.636	NA	NA	-692	YAL040C_mRNA	YAL040C	YAL040C_mRNA			YAL040C			
-chrIV-56	chrIV	366327	366397	+	205.9	0.660	NA	NA	-488	YDL049C_mRNA	YDL049C	YDL049C_mRNA			YDL049C			
-chrXII-89	chrXII	921642	921712	+	205.9	0.740	NA	NA	-81	YLR399C_mRNA	YLR399C	YLR399C_mRNA			YLR399C			
-chrXIII-48	chrXIII	434352	434422	+	203.0	0.578	NA	NA	-401	YMR083W_mRNA	YMR083W	YMR083W_mRNA			YMR083W			
-chrVII-55	chrVII	733212	733282	+	200.1	0.656	NA	NA	-165	YGR121W-A_mRNA	YGR121W-A	YGR121W-A_mRNA			YGR121W-A			
-chrXI-26	chrXI	67829	67899	+	200.1	0.677	NA	NA	-398	YKL201C_mRNA	YKL201C	YKL201C_mRNA			YKL201C			
-chrIX-19	chrIX	132041	132111	+	197.3	0.757	NA	NA	-168	YIL121W_mRNA	YIL121W	YIL121W_mRNA			YIL121W			
-chrII-34	chrII	251459	251529	+	197.3	0.565	NA	NA	-478	YBR007C_mRNA	YBR007C	YBR007C_mRNA			YBR007C			
-chrII-37	chrII	408797	408867	+	194.4	0.628	NA	NA	-337	YBR083W_mRNA	YBR083W	YBR083W_mRNA			YBR083W			
-chrIV-49	chrIV	916937	917007	+	194.4	0.840	NA	NA	486	YDR226W_mRNA	YDR226W	YDR226W_mRNA			YDR226W			
-chrII-39	chrII	251037	251107	+	191.6	0.740	NA	NA	-56	YBR007C_mRNA	YBR007C	YBR007C_mRNA			YBR007C			
-chrXIV-31	chrXIV	335836	335906	+	188.7	0.591	NA	NA	-674	YNL160W_mRNA	YNL160W	YNL160W_mRNA			YNL160W			
-chrV-36	chrV	261559	261629	+	188.7	0.647	NA	NA	-548	YER053C-A_mRNA	YER053C-A	YER053C-A_mRNA			YER053C-A			
-chrVII-56	chrVII	976943	977013	+	185.9	0.549	NA	NA	-358	YGR243W_mRNA	YGR243W	YGR243W_mRNA			YGR243W			
-chrXI-29	chrXI	322361	322431	+	183.0	0.790	NA	NA	-832	YKL062W_mRNA	YKL062W	YKL062W_mRNA			YKL062W			
-chrXVI-73	chrXVI	832974	833044	+	174.4	0.818	NA	NA	449	YPR152C_mRNA	YPR152C	YPR152C_mRNA			YPR152C			
-chrII-45	chrII	731450	731520	+	174.4	0.627	NA	NA	1098	YBR259W_mRNA	YBR259W	YBR259W_mRNA			YBR259W			
-chrII-41	chrII	392614	392684	+	171.6	0.627	NA	NA	-356	YBR077C_mRNA	YBR077C	YBR077C_mRNA			YBR077C			
-chrXIV-41	chrXIV	359389	359459	+	165.8	0.923	NA	NA	-172	YNL141W_mRNA	YNL141W	YNL141W_mRNA			YNL141W			
-chrVII-62	chrVII	905744	905814	+	160.1	0.674	NA	NA	-155	YGR204W_mRNA	YGR204W	YGR204W_mRNA			YGR204W			
-chrVII-75	chrVII	640482	640552	+	157.3	0.766	NA	NA	-146	YGR078C_mRNA	YGR078C	YGR078C_mRNA			YGR078C			
-chrIV-97	chrIV	927112	927182	+	157.3	0.613	NA	NA	-237	YDR231C_mRNA	YDR231C	YDR231C_mRNA			YDR231C			
-chrIII-18	chrIII	299119	299189	+	154.4	0.633	NA	NA	-549	YCR098C_mRNA	YCR098C	YCR098C_mRNA			YCR098C			
-chrXIII-65	chrXIII	773099	773169	+	154.4	0.667	NA	NA	219	YMR251W_mRNA	YMR251W	YMR251W_mRNA			YMR251W			
-chrII-52	chrII	477127	477197	+	154.4	0.667	NA	NA	-509	YBR118W_mRNA	YBR118W	YBR118W_mRNA			YBR118W			
-chrX-38	chrX	160333	160403	+	148.7	0.724	NA	NA	-251	YJL133W_mRNA	YJL133W	YJL133W_mRNA			YJL133W			
-chrIII-15	chrIII	85418	85488	+	148.7	0.780	NA	NA	351	YCL019W	YCL019W	YCL019W			YCL019W			NA
-chrVI-13	chrVI	225140	225210	+	148.7	0.614	NA	NA	-406	YFR033C_mRNA	YFR033C	YFR033C_mRNA			YFR033C			
-chrIV-107	chrIV	1183661	1183731	+	145.8	0.735	NA	NA	397	YDR353W_mRNA	YDR353W	YDR353W_mRNA			YDR353W			
-chrXVI-85	chrXVI	822074	822144	+	143.0	0.687	NA	NA	377	snR45_snoRNA	snR45	snR45_snoRNA			snR45			
-chrVII-86	chrVII	856920	856990	+	137.2	0.600	NA	NA	536	tL(CAA)G3_tRNA	tL(CAA)G3	tL(CAA)G3_tRNA			tL(CAA)G3			

scripts/data/reprocessed_mahendrawada_results/peaks/ACA1xstandard/B/ACA1xstandard_B_peaks.bed

@@ -1,307 +0,0 @@
-# HOMER Peaks
-# Peak finding parameters:
-# tag directory = results/tag_dirs/ACA1xstandard/B
-#
-# total peaks = 270
-# peak size = 71
-# peaks found using tags on both strands
-# minimum distance between peaks = 142
-# fragment length = 70
-# genome size = 12156890
-# Total tags = 1748719.0
-# Total tags in peaks = 20488.5
-# Approximate IP efficiency = 1.17%
-# tags per bp = 0.121454
-# expected tags per peak = 8.623
-# maximum tags considered per bp = 14.0
-# effective number of tags used for normalization = 10000000.0
-# Peaks have been centered at maximum tag pile-up
-# FDR rate threshold = 0.001000000
-# FDR effective poisson threshold = 1.382686e-06
-# FDR tag threshold = 26.0
-# number of putative peaks = 1189
-#
-# input tag directory = checseq_promoter_enrichment_slurm_pipeline/control_data/from_correspondance/tag_dir
-# Fold over input required = 10.00
-# Poisson p-value over input required = 1.00e-04
-# Putative peaks filtered by input = 909
-#
-# size of region used for local filtering = 10000
-# Fold over local region required = 6.00
-# Poisson p-value over local region required = 1.00e-04
-# Putative peaks filtered by local signal = 10
-#
-# cmd = findPeaks results/tag_dirs/ACA1xstandard/B -style factor -i checseq_promoter_enrichment_slurm_pipeline/control_data/from_correspondance/tag_dir -o auto -C 0 -L 6 -F 10
-#
-# Column Headers:
-#PeakID	chr	start	end	strand	Normalized Tag Count	focus ratio	findPeaks Score	Total Tags	Control Tags (normalized to IP Experiment)	Fold Change vs Control	p-value vs Control	Fold Change vs Local	p-value vs Local
-chrXVI	679002	679073	chrXVI-1	2062	+
-chrVI	31325	31396	chrVI-1	1767	+
-chrXIII	306295	306366	chrXIII-2	1364	+
-chrXIII	540628	540699	chrXIII-1	1352	+
-chrXIII	306555	306626	chrXIII-3	1335	+
-chrXV	908686	908757	chrXV-1	1315	+
-chrXII	11089	11160	chrXII-48	1310	+
-chrXIV	6491	6562	chrXIV-1	1290	+
-chrXI	231052	231123	chrXI-1	1095	+
-chrXV	1084655	1084726	chrXV-3	1084	+
-chrXIV	652024	652095	chrXIV-2	1029	+
-chrVII	483656	483727	chrVII-1	1024	+
-chrIX	386558	386629	chrIX-2	1018	+
-chrIV	976715	976786	chrIV-1	1009	+
-chrX	703574	703645	chrX-3	1004	+
-chrX	173276	173347	chrX-2	984	+
-chrVII	1084387	1084458	chrVII-3	955	+
-chrXV	28006	28077	chrXV-2	949	+
-chrVII	884097	884168	chrVII-2	912	+
-chrXVI	503038	503109	chrXVI-5	889	+
-chrXVI	432053	432124	chrXVI-2	881	+
-chrI	29875	29946	chrI-1	869	+
-chrIV	1525541	1525612	chrIV-2	849	+
-chrXIV	301926	301997	chrXIV-3	801	+
-chrXVI	431824	431895	chrXVI-3	795	+
-chrV	85045	85116	chrV-1	792	+
-chrVII	384938	385009	chrVII-4	792	+
-chrXIII	5429	5500	chrXIII-4	775	+
-chrXII	5523	5594	chrXII-46	735	+
-chrIX	22339	22410	chrIX-3	729	+
-chrXI	356096	356167	chrXI-2	723	+
-chrX	68983	69054	chrX-4	721	+
-chrII	5720	5791	chrII-1	715	+
-chrXI	518228	518299	chrXI-3	698	+
-chrXVI	6434	6505	chrXVI-4	689	+
-chrXII	368395	368466	chrXII-45	678	+
-chrXII	370975	371046	chrXII-47	643	+
-chrXIV	301269	301340	chrXIV-5	638	+
-chrXV	232116	232187	chrXV-4	638	+
-chrXII	1071645	1071716	chrXII-49	623	+
-chrXIV	559482	559553	chrXIV-4	618	+
-chrIV	976574	976645	chrIV-3	609	+
-chrIV	1345399	1345470	chrIV-4	606	+
-chrII	371055	371126	chrII-2	603	+
-chrXIV	441096	441167	chrXIV-6	600	+
-chrXV	988499	988570	chrXV-5	586	+
-chrXI	355896	355967	chrXI-4	575	+
-chrXIII	287658	287729	chrXIII-9	566	+
-chrVII	483204	483275	chrVII-5	560	+
-chrVIII	557012	557083	chrVIII-1	555	+
-chrXII	1065205	1065276	chrXII-50	555	+
-chrXII	1071810	1071881	chrXII-51	555	+
-chrXIII	510983	511054	chrXIII-5	555	+
-chrXI	518902	518973	chrXI-6	546	+
-chrXIV	739376	739447	chrXIV-7	546	+
-chrXV	904209	904280	chrXV-6	546	+
-chrXI	518669	518740	chrXI-5	532	+
-chrXIII	302799	302870	chrXIII-10	529	+
-chrVI	4562	4633	chrVI-2	518	+
-chrX	220357	220428	chrX-5	518	+
-chrXIII	347162	347233	chrXIII-8	518	+
-chrV	85346	85417	chrV-2	515	+
-chrXIII	287341	287412	chrXIII-11	515	+
-chrVII	23340	23411	chrVII-6	512	+
-chrXIII	557195	557266	chrXIII-6	506	+
-chrV	268581	268652	chrV-3	500	+
-chrXIII	653214	653285	chrXIII-7	500	+
-chrVII	702958	703029	chrVII-7	498	+
-chrXII	950791	950862	chrXII-52	498	+
-chrX	525933	526004	chrX-6	495	+
-chrIV	599937	600008	chrIV-8	492	+
-chrIV	539066	539137	chrIV-7	489	+
-chrV	123287	123358	chrV-4	486	+
-chrXII	809336	809407	chrXII-53	483	+
-chrXV	383003	383074	chrXV-7	483	+
-chrXIII	915240	915311	chrXIII-12	478	+
-chrII	136041	136112	chrII-3	469	+
-chrIV	132867	132938	chrIV-6	469	+
-chrXIII	798030	798101	chrXIII-13	466	+
-chrXV	384986	385057	chrXV-8	463	+
-chrXVI	214925	214996	chrXVI-6	460	+
-chrVII	809906	809977	chrVII-10	458	+
-chrXVI	829346	829417	chrXVI-10	458	+
-chrIX	254495	254566	chrIX-4	455	+
-chrVII	987504	987575	chrVII-9	452	+
-chrXIV	301050	301121	chrXIV-9	452	+
-chrXVI	645761	645832	chrXVI-9	452	+
-chrXIV	662190	662261	chrXIV-8	449	+
-chrXVI	527044	527115	chrXVI-8	446	+
-chrII	555970	556041	chrII-5	440	+
-chrXIII	906041	906112	chrXIII-14	440	+
-chrXVI	502521	502592	chrXVI-7	438	+
-chrVII	610036	610107	chrVII-12	435	+
-chrXV	882198	882269	chrXV-11	435	+
-chrII	554767	554838	chrII-4	432	+
-chrXVI	340728	340799	chrXVI-13	432	+
-chrXVI	502837	502908	chrXVI-11	429	+
-chrXV	978825	978896	chrXV-10	426	+
-chrXIII	472935	473006	chrXIII-15	423	+
-chrIV	546175	546246	chrIV-9	420	+
-chrXVI	193163	193234	chrXVI-12	420	+
-chrVIII	122464	122535	chrVIII-2	417	+
-chrXVI	40411	40482	chrXVI-15	409	+
-chrIV	387042	387113	chrIV-10	406	+
-chrIV	1469011	1469082	chrIV-12	406	+
-chrV	284827	284898	chrV-6	406	+
-chrIV	507454	507525	chrIV-11	403	+
-chrXVI	566931	567002	chrXVI-17	403	+
-chrVII	413409	413480	chrVII-13	400	+
-chrXIII	388175	388246	chrXIII-16	400	+
-chrV	570490	570561	chrV-5	397	+
-chrVII	592889	592960	chrVII-11	395	+
-chrXI	355632	355703	chrXI-7	395	+
-chrXV	987994	988065	chrXV-13	395	+
-chrVI	183141	183212	chrVI-3	389	+
-chrXI	99673	99744	chrXI-8	389	+
-chrXVI	591346	591417	chrXVI-18	389	+
-chrXVI	739664	739735	chrXVI-19	389	+
-chrII	140585	140656	chrII-7	383	+
-chrIV	543806	543877	chrIV-15	383	+
-chrVII	785868	785939	chrVII-16	383	+
-chrIV	550919	550990	chrIV-13	380	+
-chrXV	168057	168128	chrXV-16	380	+
-chrXV	882492	882563	chrXV-14	380	+
-chrII	561131	561202	chrII-8	377	+
-chrIV	730408	730479	chrIV-14	377	+
-chrIV	721739	721810	chrIV-16	375	+
-chrXI	514588	514659	chrXI-9	375	+
-chrXIII	388410	388481	chrXIII-18	375	+
-chrXVI	645246	645317	chrXVI-14	375	+
-chrIII	78268	78339	chrIII-2	372	+
-chrV	284615	284686	chrV-7	372	+
-chrXII	370378	370449	chrXII-55	372	+
-chrXVI	297021	297092	chrXVI-16	369	+
-chrV	303500	303571	chrV-9	360	+
-chrVIII	296905	296976	chrVIII-3	360	+
-chrIII	122757	122828	chrIII-1	357	+
-chrVII	324052	324123	chrVII-18	357	+
-chrVII	592591	592662	chrVII-17	357	+
-chrXIII	798255	798326	chrXIII-19	352	+
-chrV	141026	141097	chrV-8	349	+
-chrVII	650945	651016	chrVII-20	349	+
-chrXV	109767	109838	chrXV-19	346	+
-chrXV	1043232	1043303	chrXV-20	346	+
-chrXVI	453768	453839	chrXVI-23	346	+
-chrV	569586	569657	chrV-11	343	+
-chrXIII	653025	653096	chrXIII-21	343	+
-chrV	77685	77756	chrV-12	340	+
-chrXV	285767	285838	chrXV-21	340	+
-chrIV	357336	357407	chrIV-18	337	+
-chrXIII	653446	653517	chrXIII-23	337	+
-chrXV	742442	742513	chrXV-17	337	+
-chrI	71411	71482	chrI-4	335	+
-chrXIII	852307	852378	chrXIII-20	335	+
-chrXVI	455229	455300	chrXVI-25	335	+
-chrIV	369095	369166	chrIV-19	332	+
-chrXII	954928	954999	chrXII-59	332	+
-chrXVI	280174	280245	chrXVI-24	332	+
-chrVII	905412	905483	chrVII-19	329	+
-chrIII	123861	123932	chrIII-4	323	+
-chrIV	1468733	1468804	chrIV-21	320	+
-chrXI	231648	231719	chrXI-12	320	+
-chrXV	520643	520714	chrXV-22	320	+
-chrXV	989488	989559	chrXV-18	320	+
-chrIV	1080761	1080832	chrIV-22	317	+
-chrXII	636308	636379	chrXII-57	317	+
-chrVII	1000285	1000356	chrVII-23	315	+
-chrXI	230668	230739	chrXI-11	315	+
-chrII	375942	376013	chrII-11	312	+
-chrXIII	661927	661998	chrXIII-22	312	+
-chrXIV	355442	355513	chrXIV-13	309	+
-chrXIV	498643	498714	chrXIV-12	309	+
-chrXV	27646	27717	chrXV-28	306	+
-chrIV	636178	636249	chrIV-24	303	+
-chrV	242320	242391	chrV-14	303	+
-chrVII	809673	809744	chrVII-25	303	+
-chrXIII	653730	653801	chrXIII-25	303	+
-chrXVI	425622	425693	chrXVI-28	303	+
-chrXVI	840713	840784	chrXVI-33	303	+
-chrVII	987061	987132	chrVII-24	297	+
-chrXVI	297346	297417	chrXVI-32	297	+
-chrXI	615008	615079	chrXI-14	295	+
-chrXIII	287041	287112	chrXIII-26	295	+
-chrII	476730	476801	chrII-13	292	+
-chrII	419350	419421	chrII-12	286	+
-chrV	268424	268495	chrV-15	286	+
-chrV	335506	335577	chrV-17	286	+
-chrXIV	576243	576314	chrXIV-16	286	+
-chrXVI	38638	38709	chrXVI-21	286	+
-chrVII	620063	620134	chrVII-32	283	+
-chrXV	21396	21467	chrXV-30	283	+
-chrII	466379	466450	chrII-16	280	+
-chrXIII	362252	362323	chrXIII-30	280	+
-chrII	165081	165152	chrII-14	277	+
-chrVII	428134	428205	chrVII-31	272	+
-chrXII	36848	36919	chrXII-66	269	+
-chrXII	187564	187635	chrXII-68	269	+
-chrII	350961	351032	chrII-15	266	+
-chrX	294702	294773	chrX-11	266	+
-chrV	260127	260198	chrV-19	263	+
-chrXI	382205	382276	chrXI-18	263	+
-chrXIII	556915	556986	chrXIII-33	263	+
-chrXVI	585993	586064	chrXVI-36	263	+
-chrII	221375	221446	chrII-19	260	+
-chrIV	1080485	1080556	chrIV-31	260	+
-chrVI	176653	176724	chrVI-6	260	+
-chrIX	139392	139463	chrIX-10	260	+
-chrIX	169836	169907	chrIX-14	260	+
-chrVII	959531	959602	chrVII-36	257	+
-chrXVI	641720	641791	chrXVI-38	257	+
-chrXI	329561	329632	chrXI-23	246	+
-chrXIV	500679	500750	chrXIV-17	246	+
-chrI	71017	71088	chrI-7	243	+
-chrV	311582	311653	chrV-25	243	+
-chrIV	1490214	1490285	chrIV-37	240	+
-chrXII	723519	723590	chrXII-69	240	+
-chrXIV	662496	662567	chrXIV-22	240	+
-chrXV	216614	216685	chrXV-40	240	+
-chrV	117825	117896	chrV-23	237	+
-chrIX	249068	249139	chrIX-16	237	+
-chrX	663121	663192	chrX-13	237	+
-chrXV	218721	218792	chrXV-43	237	+
-chrVII	1000521	1000592	chrVII-40	235	+
-chrX	268404	268475	chrX-15	235	+
-chrII	221656	221727	chrII-27	232	+
-chrIV	234463	234534	chrIV-40	232	+
-chrX	123577	123648	chrX-16	232	+
-chrXI	382003	382074	chrXI-20	232	+
-chrXII	950349	950420	chrXII-79	229	+
-chrVIII	236331	236402	chrVIII-11	226	+
-chrXVI	576139	576210	chrXVI-43	226	+
-chrVII	271504	271575	chrVII-48	217	+
-chrVII	766397	766468	chrVII-44	217	+
-chrXIII	353127	353198	chrXIII-38	217	+
-chrXV	670981	671052	chrXV-41	217	+
-chrVII	404858	404929	chrVII-49	214	+
-chrXVI	74963	75034	chrXVI-48	214	+
-chrX	639621	639692	chrX-20	212	+
-chrI	68176	68247	chrI-9	209	+
-chrVII	20585	20656	chrVII-47	209	+
-chrIV	366326	366397	chrIV-56	206	+
-chrXII	921641	921712	chrXII-89	206	+
-chrXIII	434351	434422	chrXIII-48	203	+
-chrVII	733211	733282	chrVII-55	200	+
-chrXI	67828	67899	chrXI-26	200	+
-chrII	251458	251529	chrII-34	197	+
-chrIX	132040	132111	chrIX-19	197	+
-chrII	408796	408867	chrII-37	194	+
-chrIV	916936	917007	chrIV-49	194	+
-chrII	251036	251107	chrII-39	192	+
-chrV	261558	261629	chrV-36	189	+
-chrXIV	335835	335906	chrXIV-31	189	+
-chrVII	976942	977013	chrVII-56	186	+
-chrXI	322360	322431	chrXI-29	183	+
-chrII	731449	731520	chrII-45	174	+
-chrXVI	832973	833044	chrXVI-73	174	+
-chrII	392613	392684	chrII-41	172	+
-chrXIV	359388	359459	chrXIV-41	166	+
-chrVII	905743	905814	chrVII-62	160	+
-chrIV	927111	927182	chrIV-97	157	+
-chrVII	640481	640552	chrVII-75	157	+
-chrII	477126	477197	chrII-52	154	+
-chrIII	299118	299189	chrIII-18	154	+
-chrXIII	773098	773169	chrXIII-65	154	+
-chrIII	85417	85488	chrIII-15	149	+
-chrVI	225139	225210	chrVI-13	149	+
-chrX	160332	160403	chrX-38	149	+
-chrIV	1183660	1183731	chrIV-107	146	+
-chrXVI	822073	822144	chrXVI-85	143	+
-chrVII	856919	856990	chrVII-86	137	+

scripts/data/reprocessed_mahendrawada_results/peaks/ACA1xstandard/B/ACA1xstandard_B_peaks.txt

@@ -1,307 +0,0 @@
-# HOMER Peaks
-# Peak finding parameters:
-# tag directory = results/tag_dirs/ACA1xstandard/B
-#
-# total peaks = 270
-# peak size = 71
-# peaks found using tags on both strands
-# minimum distance between peaks = 142
-# fragment length = 70
-# genome size = 12156890
-# Total tags = 1748719.0
-# Total tags in peaks = 20488.5
-# Approximate IP efficiency = 1.17%
-# tags per bp = 0.121454
-# expected tags per peak = 8.623
-# maximum tags considered per bp = 14.0
-# effective number of tags used for normalization = 10000000.0
-# Peaks have been centered at maximum tag pile-up
-# FDR rate threshold = 0.001000000
-# FDR effective poisson threshold = 1.382686e-06
-# FDR tag threshold = 26.0
-# number of putative peaks = 1189
-#
-# input tag directory = checseq_promoter_enrichment_slurm_pipeline/control_data/from_correspondance/tag_dir
-# Fold over input required = 10.00
-# Poisson p-value over input required = 1.00e-04
-# Putative peaks filtered by input = 909
-#
-# size of region used for local filtering = 10000
-# Fold over local region required = 6.00
-# Poisson p-value over local region required = 1.00e-04
-# Putative peaks filtered by local signal = 10
-#
-# cmd = findPeaks results/tag_dirs/ACA1xstandard/B -style factor -i checseq_promoter_enrichment_slurm_pipeline/control_data/from_correspondance/tag_dir -o auto -C 0 -L 6 -F 10
-#
-# Column Headers:
-#PeakID	chr	start	end	strand	Normalized Tag Count	focus ratio	findPeaks Score	Total Tags	Control Tags (normalized to IP Experiment)	Fold Change vs Control	p-value vs Control	Fold Change vs Local	p-value vs Local
-chrXVI-1	chrXVI	679003	679073	+	2061.5	0.728	299.500000	371.0	5.8	63.73	0.00e+00	70.56	0.00e+00
-chrVI-1	chrVI	31326	31396	+	1767.0	0.762	212.500000	309.0	6.3	49.29	0.00e+00	77.27	0.00e+00
-chrXIII-2	chrXIII	306296	306366	+	1363.9	0.667	218.000000	246.5	4.7	52.93	2.58e-321	17.74	3.75e-201
-chrXIII-1	chrXIII	540629	540699	+	1352.4	0.613	224.500000	239.5	3.2	74.29	0.00e+00	30.56	2.54e-251
-chrXIII-3	chrXIII	306556	306626	+	1335.3	0.615	195.500000	233.5	3.4	68.61	0.00e+00	17.47	4.07e-196
-chrXV-1	chrXV	908687	908757	+	1315.2	0.608	214.000000	238.5	5.1	46.72	2.75e-298	18.85	1.04e-188
-chrXII-48	chrXII	11090	11160	+	1309.5	0.808	112.000000	229.0	8.7	26.36	5.22e-232	82.91	0.00e+00
-chrXIV-1	chrXIV	6492	6562	+	1289.5	0.844	190.500000	225.5	5.8	38.74	3.25e-264	72.75	0.00e+00
-chrXI-1	chrXI	231053	231123	+	1095.1	0.685	180.500000	191.5	3.9	48.60	6.05e-243	26.64	2.27e-181
-chrXV-3	chrXV	1084656	1084726	+	1083.7	0.719	127.500000	189.5	7.2	26.45	6.75e-192	45.46	4.74e-235
-chrXIV-2	chrXIV	652025	652095	+	1029.3	0.705	167.000000	181.0	5.1	35.46	2.39e-206	63.09	2.65e-249
-chrVII-1	chrVII	483657	483727	+	1023.6	0.559	189.000000	179.0	6.6	27.01	1.29e-183	15.41	3.84e-142
-chrIX-2	chrIX	386559	386629	+	1017.9	0.667	178.000000	178.0	3.3	53.72	2.44e-234	20.61	1.44e-162
-chrIV-1	chrIV	976716	976786	+	1009.3	0.730	153.000000	177.5	5.6	31.97	6.81e-194	32.17	1.71e-193
-chrX-3	chrX	703575	703645	+	1003.6	0.632	168.500000	178.0	3.0	60.23	4.99e-243	30.87	3.72e-189
-chrX-2	chrX	173277	173347	+	983.6	0.663	175.000000	174.0	5.2	33.50	2.83e-194	42.42	3.06e-209
-chrVII-3	chrVII	1084388	1084458	+	955.0	0.739	138.500000	167.0	9.9	16.80	1.26e-138	47.09	3.74e-209
-chrXV-2	chrXV	28007	28077	+	949.3	0.745	164.500000	166.5	4.9	33.80	7.39e-186	39.08	3.04e-196
-chrVII-2	chrVII	884098	884168	+	912.1	0.705	140.000000	159.5	5.0	31.80	5.16e-174	53.68	2.78e-209
-chrXVI-5	chrXVI	503039	503109	+	889.2	0.690	119.000000	159.0	4.7	34.14	5.62e-179	25.66	9.80e-156
-chrXVI-2	chrXVI	432054	432124	+	880.6	0.637	162.500000	154.0	6.4	24.22	3.05e-151	25.75	3.63e-155
-chrI-1	chrI	29876	29946	+	869.2	0.712	153.000000	153.5	7.2	21.42	2.82e-142	30.34	1.22e-163
-chrIV-2	chrIV	1525542	1525612	+	849.2	0.700	148.500000	149.5	6.8	21.96	3.87e-140	51.66	1.67e-192
-chrXIV-3	chrXIV	301927	301997	+	800.6	0.558	144.500000	140.5	4.4	32.02	7.95e-154	17.84	5.67e-120
-chrXVI-3	chrXVI	431825	431895	+	794.9	0.682	140.000000	139.0	4.2	33.02	9.25e-155	22.87	2.19e-133
-chrV-1	chrV	85046	85116	+	792.0	0.637	149.500000	138.5	3.8	36.82	8.64e-160	22.65	6.14e-131
-chrVII-4	chrVII	384939	385009	+	792.0	0.702	136.500000	138.5	2.6	53.33	1.74e-181	47.44	8.13e-170
-chrXIII-4	chrXIII	5430	5500	+	774.9	0.710	141.000000	135.5	8.5	15.93	2.69e-109	36.66	9.72e-144
-chrXII-46	chrXII	5524	5594	+	734.8	0.673	122.000000	128.5	5.9	21.74	4.34e-120	46.49	5.44e-161
-chrIX-3	chrIX	22340	22410	+	729.1	0.654	129.500000	127.5	5.7	22.24	2.26e-120	32.98	1.68e-141
-chrXI-2	chrXI	356097	356167	+	723.4	0.647	130.500000	126.5	6.4	19.89	1.29e-113	16.21	1.28e-100
-chrX-4	chrX	68984	69054	+	720.5	0.748	132.500000	126.0	5.6	22.33	7.51e-120	84.04	4.33e-189
-chrII-1	chrII	5721	5791	+	714.8	0.770	109.500000	125.5	7.5	16.68	1.08e-103	39.37	1.19e-148
-chrXI-3	chrXI	518229	518299	+	697.7	0.711	122.000000	122.0	3.9	31.68	6.11e-134	14.19	2.01e-93
-chrXVI-4	chrXVI	6435	6505	+	689.1	0.736	125.000000	141.0	8.2	17.11	2.04e-118	30.12	5.13e-129
-chrXII-45	chrXII	368396	368466	+	677.6	0.670	134.000000	118.5	5.0	23.63	6.37e-115	13.19	9.06e-87
-chrXII-47	chrXII	370976	371046	+	643.3	0.692	117.000000	117.0	2.5	46.66	1.08e-147	12.42	9.70e-80
-chrXIV-5	chrXIV	301270	301340	+	637.6	0.686	113.000000	111.5	5.1	21.84	1.39e-104	13.85	6.97e-84
-chrXV-4	chrXV	232117	232187	+	637.6	0.582	113.000000	111.5	4.7	23.94	8.12e-109	34.12	9.95e-120
-chrXII-49	chrXII	1071646	1071716	+	623.3	0.707	109.500000	109.0	5.6	19.32	2.09e-97	33.79	1.62e-121
-chrXIV-4	chrXIV	559483	559553	+	617.6	0.653	115.500000	108.0	4.6	23.65	1.44e-105	24.76	1.22e-107
-chrIV-3	chrIV	976575	976645	+	609.0	0.582	128.000000	106.5	5.0	21.24	1.03e-98	18.01	1.64e-91
-chrIV-4	chrIV	1345400	1345470	+	606.2	0.741	110.000000	106.0	2.7	39.45	1.92e-126	67.08	2.13e-150
-chrII-2	chrII	371056	371126	+	603.3	0.660	106.500000	106.0	5.6	18.79	1.47e-93	16.92	5.57e-88
-chrXIV-6	chrXIV	441097	441167	+	600.4	0.668	109.500000	105.0	6.4	16.51	3.84e-87	34.19	6.50e-119
-chrXV-5	chrXV	988500	988570	+	586.1	0.628	101.500000	102.5	3.8	27.25	1.22e-105	13.02	1.09e-74
-chrXI-4	chrXI	355897	355967	+	574.7	0.624	110.000000	101.5	4.8	20.99	1.20e-93	12.91	6.35e-73
-chrXIII-9	chrXIII	287659	287729	+	566.1	0.635	91.500000	99.0	3.7	26.96	2.37e-102	15.05	1.58e-78
-chrVII-5	chrVII	483205	483275	+	560.4	0.522	101.500000	99.0	4.3	23.03	7.64e-96	8.05	1.55e-53
-chrVIII-1	chrVIII	557013	557083	+	554.7	0.607	89.000000	97.0	8.1	11.90	7.87e-68	30.37	8.91e-99
-chrXII-50	chrXII	1065206	1065276	+	554.7	0.738	97.000000	97.0	3.8	25.79	1.62e-98	31.35	3.63e-105
-chrXII-51	chrXII	1071811	1071881	+	554.7	0.585	91.000000	97.0	8.3	11.65	5.43e-67	29.36	8.70e-104
-chrXIII-5	chrXIII	510984	511054	+	554.7	0.643	98.000000	97.0	6.3	15.47	4.48e-78	30.23	7.59e-103
-chrXI-6	chrXI	518903	518973	+	546.1	0.575	96.500000	96.0	5.7	16.75	2.17e-80	10.96	3.76e-63
-chrXIV-7	chrXIV	739377	739447	+	546.1	0.681	103.500000	98.5	7.8	12.64	1.14e-70	29.07	2.74e-101
-chrXV-6	chrXV	904210	904280	+	546.1	0.626	100.000000	97.0	4.3	22.56	4.01e-93	8.42	2.08e-53
-chrXI-5	chrXI	518670	518740	+	531.8	0.535	97.500000	94.5	3.9	24.54	2.25e-93	10.64	5.45e-61
-chrXIII-10	chrXIII	302800	302870	+	529.0	0.687	91.500000	92.5	4.9	18.78	3.14e-81	6.78	2.90e-44
-chrVI-2	chrVI	4563	4633	+	517.5	0.786	106.000000	90.5	7.9	11.48	1.37e-61	35.06	6.12e-103
-chrX-5	chrX	220358	220428	+	517.5	0.635	100.500000	90.5	4.7	19.43	9.07e-81	25.37	5.90e-89
-chrXIII-8	chrXIII	347163	347233	+	517.5	0.759	92.500000	90.5	6.9	13.12	2.19e-66	42.26	4.74e-110
-chrV-2	chrV	85347	85417	+	514.7	0.556	93.000000	93.5	5.5	17.12	1.48e-78	13.44	2.99e-65
-chrXIII-11	chrXIII	287342	287412	+	514.7	0.584	90.500000	91.0	5.5	16.66	4.26e-76	13.48	1.26e-66
-chrVII-6	chrVII	23341	23411	+	511.8	0.651	100.500000	98.0	3.3	29.57	3.90e-105	18.57	3.17e-78
-chrXIII-6	chrXIII	557196	557266	+	506.1	0.655	94.000000	90.0	6.8	13.22	7.38e-67	24.78	7.12e-88
-chrV-3	chrV	268582	268652	+	500.4	0.653	89.500000	87.5	3.2	27.14	3.34e-90	23.51	5.44e-85
-chrXIII-7	chrXIII	653215	653285	+	500.4	0.616	93.000000	87.5	1.8	48.85	8.50e-112	19.07	1.83e-77
-chrVII-7	chrVII	702959	703029	+	497.5	0.643	91.500000	87.0	7.1	12.30	3.68e-62	24.24	2.66e-86
-chrXII-52	chrXII	950792	950862	+	497.5	0.671	90.500000	87.0	3.0	29.44	2.24e-93	16.67	7.47e-73
-chrX-6	chrX	525934	526004	+	494.6	0.661	89.000000	88.5	3.4	26.01	1.19e-89	32.21	2.26e-95
-chrIV-8	chrIV	599938	600008	+	491.8	0.598	87.000000	86.0	5.7	15.00	2.33e-68	26.49	1.60e-88
-chrIV-7	chrIV	539067	539137	+	488.9	0.569	87.000000	87.0	5.7	15.18	1.54e-69	13.59	5.39e-64
-chrV-4	chrV	123288	123358	+	486.1	0.680	87.000000	86.5	4.7	18.57	1.19e-75	43.07	6.32e-105
-chrXII-53	chrXII	809337	809407	+	483.2	0.552	89.000000	84.5	5.2	16.27	2.27e-69	26.79	7.01e-85
-chrXV-7	chrXV	383004	383074	+	483.2	0.677	84.500000	84.5	7.4	11.37	2.95e-57	17.39	3.46e-60
-chrXIII-12	chrXIII	915241	915311	+	477.5	0.673	86.000000	86.0	4.5	19.21	4.85e-77	27.38	1.95e-86
-chrII-3	chrII	136042	136112	+	468.9	0.734	82.000000	82.0	6.2	13.27	3.39e-61	20.46	1.11e-75
-chrIV-6	chrIV	132868	132938	+	468.9	0.591	91.000000	83.0	4.3	19.31	1.34e-74	24.93	2.07e-82
-chrXIII-13	chrXIII	798031	798101	+	466.1	0.656	84.000000	82.5	4.6	18.06	2.86e-71	31.05	1.89e-85
-chrXV-8	chrXV	384987	385057	+	463.2	0.724	84.000000	81.0	6.7	12.06	2.27e-57	21.17	6.24e-76
-chrXVI-6	chrXVI	214926	214996	+	460.3	0.547	95.000000	81.0	5.0	16.15	6.45e-67	19.66	1.78e-71
-chrVII-10	chrVII	809907	809977	+	457.5	0.604	81.500000	80.0	3.9	20.30	1.26e-73	18.51	1.60e-69
-chrXVI-10	chrXVI	829347	829417	+	457.5	0.652	80.000000	80.0	3.7	21.79	5.78e-76	18.85	3.53e-71
-chrIX-4	chrIX	254496	254566	+	454.6	0.611	79.500000	79.5	3.8	21.14	7.73e-74	18.92	1.45e-69
-chrVII-9	chrVII	987505	987575	+	451.8	0.544	82.500000	81.0	4.4	18.46	2.40e-71	14.98	6.83e-63
-chrXIV-9	chrXIV	301051	301121	+	451.8	0.693	79.000000	79.0	6.4	12.42	6.14e-57	9.54	1.10e-48
-chrXVI-9	chrXVI	645762	645832	+	451.8	0.618	84.000000	79.0	3.4	23.21	4.06e-77	11.91	1.31e-55
-chrXIV-8	chrXIV	662191	662261	+	448.9	0.631	83.500000	78.5	3.8	20.87	1.63e-72	21.50	1.76e-73
-chrXVI-8	chrXVI	527045	527115	+	446.0	0.646	86.000000	78.0	5.4	14.52	4.00e-61	34.79	2.14e-89
-chrII-5	chrII	555971	556041	+	440.3	0.645	77.000000	77.0	5.3	14.57	1.74e-60	15.39	3.38e-62
-chrXIII-14	chrXIII	906042	906112	+	440.3	0.712	79.000000	77.0	5.1	15.08	1.46e-61	33.97	1.71e-87
-chrXVI-7	chrXVI	502522	502592	+	437.5	0.620	87.500000	76.5	4.8	15.82	4.72e-62	11.16	2.09e-51
-chrVII-12	chrVII	610037	610107	+	434.6	0.616	78.000000	76.0	3.5	21.76	3.22e-72	20.05	1.19e-69
-chrXV-11	chrXV	882199	882269	+	434.6	0.671	75.000000	76.0	5.0	15.15	6.28e-61	26.39	2.60e-77
-chrII-4	chrII	554768	554838	+	431.7	0.674	77.500000	75.5	4.9	15.33	2.69e-60	15.47	1.41e-60
-chrXVI-13	chrXVI	340729	340799	+	431.7	0.648	74.500000	75.5	4.8	15.61	7.43e-61	24.48	5.83e-75
-chrXVI-11	chrXVI	502838	502908	+	428.9	0.601	79.000000	77.5	4.1	18.81	2.61e-68	10.92	1.21e-49
-chrXV-10	chrXV	978826	978896	+	426.0	0.504	77.500000	75.0	4.9	15.23	2.69e-60	12.94	1.85e-54
-chrXIII-15	chrXIII	472936	473006	+	423.2	0.657	77.500000	74.0	3.4	21.74	2.41e-70	33.12	2.31e-83
-chrIV-9	chrIV	546176	546246	+	420.3	0.644	75.500000	73.5	4.1	17.84	2.95e-63	10.29	4.24e-47
-chrXVI-12	chrXVI	193164	193234	+	420.3	0.645	74.500000	73.5	7.0	10.52	9.67e-48	22.67	1.81e-70
-chrVIII-2	chrVIII	122465	122535	+	417.4	0.612	70.500000	73.0	5.3	13.82	7.29e-56	19.90	9.66e-67
-chrXVI-15	chrXVI	40412	40482	+	408.9	0.615	72.000000	71.5	5.1	14.01	1.42e-54	14.21	5.39e-55
-chrIV-10	chrIV	387043	387113	+	406.0	0.664	75.000000	71.0	4.4	16.18	6.24e-59	25.10	8.07e-71
-chrIV-12	chrIV	1469012	1469082	+	406.0	0.729	73.500000	71.0	3.6	19.82	7.62e-65	28.13	3.47e-75
-chrV-6	chrV	284828	284898	+	406.0	0.644	71.000000	71.0	2.6	27.34	2.44e-74	16.04	1.11e-58
-chrIV-11	chrIV	507455	507525	+	403.2	0.708	75.000000	74.5	4.8	15.40	1.15e-59	26.93	7.06e-73
-chrXVI-17	chrXVI	566932	567002	+	403.2	0.727	70.500000	70.5	6.6	10.64	3.80e-46	47.40	2.26e-89
-chrVII-13	chrVII	413410	413480	+	400.3	0.748	72.000000	70.0	5.2	13.48	6.11e-53	39.16	6.56e-84
-chrXIII-16	chrXIII	388176	388246	+	400.3	0.582	70.000000	70.0	2.9	24.43	5.04e-70	18.99	7.36e-62
-chrV-5	chrV	570491	570561	+	397.4	0.625	74.500000	69.5	6.4	10.93	3.01e-46	18.71	3.18e-61
-chrVII-11	chrVII	592890	592960	+	394.6	0.558	80.500000	76.5	6.4	11.86	3.01e-53	12.00	5.25e-49
-chrXI-7	chrXI	355633	355703	+	394.6	0.532	71.500000	69.5	4.4	15.84	1.61e-56	8.58	6.06e-40
-chrXV-13	chrXV	987995	988065	+	394.6	0.544	71.500000	69.0	2.5	27.52	1.75e-72	8.51	1.04e-39
-chrVI-3	chrVI	183142	183212	+	388.9	0.739	70.500000	68.5	6.8	10.06	2.15e-43	30.38	2.76e-74
-chrXI-8	chrXI	99674	99744	+	388.9	0.623	70.500000	68.0	3.2	21.09	6.27e-64	20.76	1.73e-63
-chrXVI-18	chrXVI	591347	591417	+	388.9	0.674	70.500000	68.0	6.5	10.40	1.81e-44	19.41	1.37e-61
-chrXVI-19	chrXVI	739665	739735	+	388.9	0.618	69.500000	68.0	5.4	12.65	9.21e-50	31.86	1.21e-75
-chrII-7	chrII	140586	140656	+	383.1	0.643	69.000000	68.5	3.6	19.12	5.70e-61	15.83	4.12e-55
-chrIV-15	chrIV	543807	543877	+	383.1	0.656	67.000000	67.0	4.6	14.67	4.81e-53	7.38	5.40e-35
-chrVII-16	chrVII	785869	785939	+	383.1	0.682	68.000000	67.0	4.7	14.12	5.31e-52	19.24	1.80e-60
-chrIV-13	chrIV	550920	550990	+	380.3	0.718	70.000000	66.5	4.2	15.80	4.59e-54	17.61	5.38e-57
-chrXV-16	chrXV	168058	168128	+	380.3	0.683	66.500000	66.5	5.6	11.98	1.06e-46	28.31	5.47e-70
-chrXV-14	chrXV	882493	882563	+	380.3	0.734	71.000000	67.5	4.2	16.04	2.88e-55	22.85	4.36e-64
-chrII-8	chrII	561132	561202	+	377.4	0.850	66.000000	66.0	2.6	25.41	3.24e-67	35.30	2.54e-76
-chrIV-14	chrIV	730409	730479	+	377.4	0.899	69.000000	66.0	6.1	10.84	2.79e-44	67.13	2.25e-94
-chrIV-16	chrIV	721740	721810	+	374.6	0.710	67.000000	65.5	3.9	17.01	3.16e-55	20.98	7.60e-61
-chrXI-9	chrXI	514589	514659	+	374.6	0.614	68.000000	65.5	3.0	21.51	1.64e-61	7.25	2.29e-33
-chrXIII-18	chrXIII	388411	388481	+	374.6	0.567	66.000000	67.0	6.6	10.11	4.30e-43	17.62	2.53e-55
-chrXVI-14	chrXVI	645247	645317	+	374.6	0.597	72.500000	66.0	4.2	15.68	4.59e-54	9.63	1.27e-40
-chrIII-2	chrIII	78269	78339	+	371.7	0.723	65.500000	65.0	5.0	12.96	2.88e-48	25.61	1.98e-66
-chrV-7	chrV	284616	284686	+	371.7	0.594	70.000000	65.0	3.0	21.35	1.64e-61	14.52	3.02e-51
-chrXII-55	chrXII	370379	370449	+	371.7	0.641	69.000000	65.0	3.5	18.61	7.87e-58	6.82	2.06e-31
-chrXVI-16	chrXVI	297022	297092	+	368.8	0.635	72.000000	66.0	5.4	12.28	1.46e-47	18.73	6.16e-57
-chrV-9	chrV	303501	303571	+	360.3	0.498	64.000000	63.0	6.1	10.34	3.40e-41	15.86	5.56e-52
-chrVIII-3	chrVIII	296906	296976	+	360.3	0.697	65.500000	63.0	4.3	14.66	5.84e-50	17.89	4.40e-55
-chrIII-1	chrIII	122758	122828	+	357.4	0.660	66.500000	62.5	5.2	12.03	4.43e-44	8.87	1.17e-36
-chrVII-18	chrVII	324053	324123	+	357.4	0.630	64.000000	62.5	4.0	15.51	2.04e-50	19.75	1.47e-56
-chrVII-17	chrVII	592592	592662	+	357.4	0.524	65.000000	65.0	2.8	23.41	5.27e-64	10.78	2.19e-41
-chrXIII-19	chrXIII	798256	798326	+	351.7	0.638	64.000000	61.5	4.6	13.46	3.84e-46	22.47	5.46e-58
-chrV-8	chrV	141027	141097	+	348.8	0.630	64.000000	61.0	3.3	18.41	4.15e-54	15.62	5.14e-50
-chrVII-20	chrVII	650946	651016	+	348.8	0.682	61.000000	61.0	1.9	32.43	1.68e-68	21.43	6.13e-58
-chrXV-19	chrXV	109768	109838	+	346.0	0.536	63.500000	60.5	4.6	13.25	5.13e-45	15.18	2.59e-48
-chrXV-20	chrXV	1043233	1043303	+	346.0	0.616	63.500000	63.5	5.3	12.02	9.80e-45	17.04	3.80e-51
-chrXVI-23	chrXVI	453769	453839	+	346.0	0.702	60.500000	60.5	4.5	13.51	1.71e-45	14.47	3.66e-47
-chrV-11	chrV	569587	569657	+	343.1	0.616	62.000000	60.0	5.2	11.55	6.23e-42	15.37	8.05e-49
-chrXIII-21	chrXIII	653026	653096	+	343.1	0.570	61.000000	60.5	3.5	17.32	1.51e-51	12.51	7.55e-44
-chrV-12	chrV	77686	77756	+	340.2	0.635	60.000000	59.5	5.4	11.07	4.47e-40	27.97	2.27e-60
-chrXV-21	chrXV	285768	285838	+	340.2	0.656	62.000000	60.5	4.3	14.07	1.76e-46	26.25	7.24e-61
-chrIV-18	chrIV	357337	357407	+	337.4	0.708	64.000000	59.0	3.8	15.69	1.58e-48	21.10	1.02e-55
-chrXIII-23	chrXIII	653447	653517	+	337.4	0.619	60.000000	59.5	3.8	15.82	1.58e-48	12.27	8.83e-42
-chrXV-17	chrXV	742443	742513	+	337.4	0.704	65.000000	59.0	3.8	15.69	1.58e-48	34.67	5.70e-68
-chrI-4	chrI	71412	71482	+	334.5	0.699	58.500000	58.5	5.6	10.54	2.76e-38	11.24	2.60e-39
-chrXIII-20	chrXIII	852308	852378	+	334.5	0.664	64.000000	58.5	2.6	22.52	3.64e-56	31.35	4.22e-63
-chrXVI-25	chrXVI	455230	455300	+	334.5	0.723	58.500000	58.5	3.3	17.65	2.47e-50	13.71	1.24e-43
-chrIV-19	chrIV	369096	369166	+	331.7	0.730	64.000000	58.0	3.0	19.63	4.61e-53	14.61	4.54e-46
-chrXII-59	chrXII	954929	954999	+	331.7	0.762	60.000000	58.0	3.2	17.99	5.50e-51	11.28	4.77e-40
-chrXVI-24	chrXVI	280175	280245	+	331.7	0.661	59.000000	59.0	5.1	11.56	2.82e-41	30.26	1.57e-63
-chrVII-19	chrVII	905413	905483	+	328.8	0.770	63.500000	57.5	5.0	11.47	1.48e-39	28.21	1.40e-60
-chrIII-4	chrIII	123862	123932	+	323.1	0.629	56.500000	56.5	4.1	13.71	6.66e-43	7.81	1.54e-30
-chrIV-21	chrIV	1468734	1468804	+	320.2	0.549	59.000000	56.0	4.5	12.51	5.00e-41	21.28	3.61e-53
-chrXI-12	chrXI	231649	231719	+	320.2	0.668	57.500000	56.5	3.0	19.12	1.75e-50	7.56	5.07e-30
-chrXV-22	chrXV	520644	520714	+	320.2	0.596	61.500000	56.0	5.4	10.42	5.64e-37	24.94	7.28e-57
-chrXV-18	chrXV	989489	989559	+	320.2	0.661	65.000000	57.5	5.7	10.03	1.48e-36	6.56	3.68e-26
-chrIV-22	chrIV	1080762	1080832	+	317.4	0.663	57.500000	55.5	4.7	11.69	1.19e-38	29.91	7.45e-60
-chrXII-57	chrXII	636309	636379	+	317.4	0.720	61.000000	61.0	2.4	25.23	4.50e-62	30.62	2.15e-60
-chrVII-23	chrVII	1000286	1000356	+	314.5	0.528	56.000000	55.0	5.0	10.97	1.88e-37	17.40	5.14e-46
-chrXI-11	chrXI	230669	230739	+	314.5	0.571	58.000000	55.0	5.5	10.07	1.34e-35	6.81	8.46e-26
-chrII-11	chrII	375943	376013	+	311.7	0.570	56.000000	55.0	5.0	10.97	1.88e-37	6.49	9.47e-26
-chrXIII-22	chrXIII	661928	661998	+	311.7	0.567	60.500000	55.5	5.3	10.50	2.55e-36	19.47	3.86e-49
-chrXIV-13	chrXIV	355443	355513	+	308.8	0.672	55.500000	54.0	4.9	10.96	8.54e-37	20.72	9.83e-51
-chrXIV-12	chrXIV	498644	498714	+	308.8	0.708	56.000000	54.0	4.4	12.31	2.82e-39	14.06	3.58e-42
-chrXV-28	chrXV	27647	27717	+	305.9	0.508	53.500000	53.5	4.4	12.19	3.48e-38	10.60	2.96e-35
-chrIV-24	chrIV	636179	636249	+	303.1	0.642	53.000000	53.0	2.5	21.14	2.89e-50	34.08	7.45e-61
-chrV-14	chrV	242321	242391	+	303.1	0.738	58.500000	53.0	4.4	12.08	3.48e-38	15.25	3.64e-43
-chrVII-25	chrVII	809674	809744	+	303.1	0.715	54.000000	54.0	5.3	10.22	2.66e-35	10.86	2.30e-33
-chrXIII-25	chrXIII	653731	653801	+	303.1	0.651	56.500000	53.0	3.5	15.17	4.67e-43	10.95	4.07e-36
-chrXVI-28	chrXVI	425623	425693	+	303.1	0.656	57.500000	53.0	4.4	12.08	3.48e-38	26.66	2.17e-55
-chrXVI-33	chrXVI	840714	840784	+	303.1	0.634	55.000000	53.0	3.7	14.43	5.54e-42	18.28	4.34e-47
-chrVII-24	chrVII	987062	987132	+	297.4	0.629	54.500000	54.5	4.1	13.23	1.21e-40	9.31	3.63e-32
-chrXVI-32	chrXVI	297347	297417	+	297.4	0.610	55.500000	52.0	4.0	12.90	7.14e-39	14.60	1.82e-41
-chrXI-14	chrXI	615009	615079	+	294.5	0.607	52.500000	51.5	2.5	20.54	1.27e-47	22.79	5.03e-50
-chrXIII-26	chrXIII	287042	287112	+	294.5	0.609	54.000000	51.5	5.1	10.09	5.55e-33	7.44	5.09e-27
-chrII-13	chrII	476731	476801	+	291.6	0.719	51.000000	51.0	3.9	12.94	3.20e-38	26.22	5.20e-53
-chrII-12	chrII	419351	419421	+	285.9	0.582	51.500000	50.0	3.0	16.42	2.51e-42	14.36	1.35e-39
-chrV-15	chrV	268425	268495	+	285.9	0.659	54.000000	50.0	3.3	15.09	1.32e-40	12.32	1.28e-35
-chrV-17	chrV	335507	335577	+	285.9	0.733	50.000000	50.0	4.4	11.39	5.82e-35	26.60	4.76e-48
-chrXIV-16	chrXIV	576244	576314	+	285.9	0.611	51.500000	51.5	4.8	10.65	4.58e-34	23.62	7.91e-50
-chrXVI-21	chrXVI	38639	38709	+	285.9	0.650	61.500000	50.0	4.4	11.39	5.82e-35	9.98	1.52e-31
-chrVII-32	chrVII	620064	620134	+	283.1	0.729	49.500000	49.5	4.6	10.84	3.96e-33	25.40	3.83e-50
-chrXV-30	chrXV	21397	21467	+	283.1	0.667	49.500000	49.5	4.0	12.28	1.45e-35	18.03	3.49e-43
-chrII-16	chrII	466380	466450	+	280.2	0.623	49.500000	49.0	2.9	17.10	2.52e-42	25.86	1.03e-50
-chrXIII-30	chrXIII	362253	362323	+	280.2	0.569	50.000000	49.0	3.2	15.20	5.71e-40	14.61	3.47e-39
-chrII-14	chrII	165082	165152	+	277.3	0.594	50.500000	48.5	4.7	10.41	9.91e-32	11.90	2.91e-34
-chrVII-31	chrVII	428135	428205	+	271.6	0.799	50.000000	47.5	4.1	11.53	5.44e-33	23.81	6.88e-47
-chrXII-66	chrXII	36849	36919	+	268.8	0.703	49.000000	47.5	4.6	10.40	4.48e-31	25.96	1.39e-47
-chrXII-68	chrXII	187565	187635	+	268.8	0.625	47.000000	47.0	3.1	14.99	3.76e-38	23.31	1.11e-46
-chrII-15	chrII	350962	351032	+	265.9	0.839	50.000000	49.5	4.2	11.76	1.03e-34	48.71	8.26e-60
-chrX-11	chrX	294703	294773	+	265.9	0.621	49.000000	46.5	4.0	11.54	2.47e-32	14.73	7.68e-37
-chrV-19	chrV	260128	260198	+	263.0	0.781	49.500000	46.0	2.7	17.12	7.28e-40	15.03	2.02e-37
-chrXI-18	chrXI	382206	382276	+	263.0	0.619	46.000000	46.0	3.4	13.52	1.91e-35	12.49	4.40e-33
-chrXIII-33	chrXIII	556916	556986	+	263.0	0.545	47.000000	46.0	2.8	16.57	3.02e-39	11.93	3.77e-33
-chrXVI-36	chrXVI	585994	586064	+	263.0	0.570	48.500000	47.5	4.7	10.20	1.02e-30	11.05	9.53e-32
-chrII-19	chrII	221376	221446	+	260.2	0.652	46.500000	45.5	4.3	10.58	3.96e-30	13.94	4.54e-35
-chrIV-31	chrIV	1080486	1080556	+	260.2	0.761	48.000000	48.0	4.0	11.91	1.77e-34	23.52	9.87e-45
-chrVI-6	chrVI	176654	176724	+	260.2	0.623	47.000000	45.5	3.8	12.10	1.65e-32	26.67	2.71e-47
-chrIX-10	chrIX	139393	139463	+	260.2	0.643	52.000000	46.0	4.4	10.48	8.75e-31	8.02	2.69e-25
-chrIX-14	chrIX	169837	169907	+	260.2	0.852	46.000000	45.5	3.3	13.73	8.49e-35	33.23	3.05e-51
-chrVII-36	chrVII	959532	959602	+	257.3	0.662	45.500000	45.5	4.0	11.29	2.82e-31	19.73	1.18e-41
-chrXVI-38	chrXVI	641721	641791	+	257.3	0.573	47.000000	45.0	3.9	11.42	1.12e-31	6.63	2.87e-22
-chrXI-23	chrXI	329562	329632	+	245.9	0.827	43.000000	43.0	1.7	25.27	2.65e-44	17.48	9.65e-38
-chrXIV-17	chrXIV	500680	500750	+	245.9	0.662	45.500000	45.0	3.8	11.96	1.65e-32	12.15	2.10e-31
-chrI-7	chrI	71018	71088	+	243.0	0.708	42.500000	42.5	3.8	11.30	2.65e-29	8.23	4.15e-24
-chrV-25	chrV	311583	311653	+	243.0	0.652	42.500000	42.5	3.5	12.17	1.53e-30	26.36	7.65e-44
-chrIV-37	chrIV	1490215	1490285	+	240.2	0.647	44.000000	42.0	3.7	11.44	1.05e-29	11.74	3.92e-30
-chrXII-69	chrXII	723520	723590	+	240.2	0.804	45.000000	42.0	2.9	14.66	6.95e-34	13.56	1.43e-32
-chrXIV-22	chrXIV	662497	662567	+	240.2	0.596	42.000000	42.0	2.5	16.75	3.62e-36	10.82	8.94e-29
-chrXV-40	chrXV	216615	216685	+	240.2	0.695	44.000000	42.0	3.6	11.72	4.06e-30	17.64	4.66e-37
-chrV-23	chrV	117826	117896	+	237.3	0.585	43.500000	41.5	3.2	12.87	9.01e-31	23.50	7.18e-41
-chrIX-16	chrIX	249069	249139	+	237.3	0.703	43.000000	41.5	4.0	10.30	3.86e-27	13.28	2.76e-31
-chrX-13	chrX	663122	663192	+	237.3	0.648	45.000000	42.0	4.1	10.20	8.53e-28	21.53	2.19e-39
-chrXV-43	chrXV	218722	218792	+	237.3	0.740	42.000000	42.0	3.1	13.40	2.31e-32	17.17	1.46e-35
-chrVII-40	chrVII	1000522	1000592	+	234.5	0.639	43.500000	41.0	4.0	10.17	3.86e-27	12.54	6.19e-29
-chrX-15	chrX	268405	268475	+	234.5	0.550	44.000000	41.0	1.7	24.10	1.66e-41	19.98	2.56e-38
-chrII-27	chrII	221657	221727	+	231.6	0.505	41.500000	40.5	3.7	11.03	1.35e-27	12.53	1.26e-29
-chrIV-40	chrIV	234464	234534	+	231.6	0.618	41.500000	40.5	2.0	20.56	1.08e-37	15.50	4.69e-33
-chrX-16	chrX	123578	123648	+	231.6	0.669	43.000000	40.5	3.5	11.60	2.17e-28	11.03	1.35e-27
-chrXI-20	chrXI	382004	382074	+	231.6	0.609	45.500000	40.5	3.7	11.03	1.35e-27	11.01	1.45e-27
-chrXII-79	chrXII	950350	950420	+	228.7	0.641	40.500000	40.0	3.6	11.17	5.48e-28	7.09	5.62e-21
-chrVIII-11	chrVIII	236332	236402	+	225.9	0.658	42.500000	39.5	3.9	10.02	1.78e-25	20.92	4.51e-37
-chrXVI-43	chrXVI	576140	576210	+	225.9	0.788	41.500000	39.5	3.7	10.76	1.47e-26	15.85	1.26e-32
-chrVII-48	chrVII	271505	271575	+	217.3	0.620	38.500000	38.0	3.3	11.47	4.49e-27	16.58	9.98e-33
-chrVII-44	chrVII	766398	766468	+	217.3	0.647	40.500000	38.0	3.4	11.17	1.13e-26	24.38	8.89e-39
-chrXIII-38	chrXIII	353128	353198	+	217.3	0.585	41.500000	38.0	3.2	11.79	1.73e-27	12.92	3.62e-28
-chrXV-41	chrXV	670982	671052	+	217.3	0.613	43.500000	38.0	3.4	11.17	1.13e-26	17.60	1.19e-33
-chrVII-49	chrVII	404859	404929	+	214.4	0.932	38.500000	38.0	3.2	11.79	1.73e-27	20.53	5.94e-35
-chrXVI-48	chrXVI	74964	75034	+	214.4	0.788	38.000000	38.0	3.6	10.61	6.69e-26	19.86	1.88e-34
-chrX-20	chrX	639622	639692	+	211.6	0.702	38.500000	38.0	1.4	26.52	4.09e-40	11.81	7.65e-27
-chrI-9	chrI	68177	68247	+	208.7	0.636	39.000000	36.5	2.9	12.74	4.80e-27	7.34	2.52e-19
-chrVII-47	chrVII	20586	20656	+	208.7	0.581	39.000000	38.0	3.4	11.17	1.13e-26	7.00	1.14e-18
-chrIV-56	chrIV	366327	366397	+	205.9	0.660	38.000000	36.0	3.1	11.49	9.30e-26	7.74	1.61e-19
-chrXII-89	chrXII	921642	921712	+	205.9	0.740	38.500000	36.0	3.6	10.05	7.37e-24	22.78	8.26e-36
-chrXIII-48	chrXIII	434352	434422	+	203.0	0.578	37.000000	35.5	3.3	10.71	6.30e-24	8.39	1.33e-20
-chrVII-55	chrVII	733212	733282	+	200.1	0.656	35.000000	35.0	2.5	13.96	7.98e-28	21.28	7.15e-34
-chrXI-26	chrXI	67829	67899	+	200.1	0.677	38.500000	35.0	2.6	13.48	2.50e-27	10.99	1.80e-24
-chrII-34	chrII	251459	251529	+	197.3	0.565	35.500000	35.0	3.4	10.28	1.47e-23	11.18	7.36e-24
-chrIX-19	chrIX	132041	132111	+	197.3	0.757	36.500000	34.5	3.2	10.70	2.87e-23	20.06	4.03e-32
-chrII-37	chrII	408797	408867	+	194.4	0.628	34.500000	34.0	2.7	12.65	9.80e-26	14.21	4.64e-25
-chrIV-49	chrIV	916937	917007	+	194.4	0.840	39.500000	36.5	2.1	17.72	7.20e-32	11.10	5.93e-24
-chrII-39	chrII	251037	251107	+	191.6	0.740	33.500000	33.5	2.8	12.07	3.36e-24	11.25	2.81e-23
-chrV-36	chrV	261559	261629	+	188.7	0.647	34.500000	34.0	3.3	10.26	6.67e-23	9.00	1.36e-20
-chrXIV-31	chrXIV	335836	335906	+	188.7	0.591	33.000000	33.0	3.0	11.17	2.23e-23	14.93	3.11e-27
-chrVII-56	chrVII	976943	977013	+	185.9	0.549	34.000000	32.5	3.0	11.00	2.49e-22	12.88	2.43e-24
-chrXI-29	chrXI	322361	322431	+	183.0	0.790	33.000000	33.0	3.1	10.53	1.30e-22	15.07	1.42e-26
-chrII-45	chrII	731450	731520	+	174.4	0.627	30.500000	30.5	3.0	10.32	2.85e-20	18.03	5.15e-27
-chrXVI-73	chrXVI	832974	833044	+	174.4	0.818	30.500000	30.5	2.3	13.10	4.08e-23	7.04	7.16e-16
-chrII-41	chrII	392614	392684	+	171.6	0.627	32.000000	30.0	1.8	16.75	2.62e-26	18.04	3.17e-27
-chrXIV-41	chrXIV	359389	359459	+	165.8	0.923	29.000000	29.0	1.8	16.19	4.40e-25	11.82	2.11e-21
-chrVII-62	chrVII	905744	905814	+	160.1	0.674	30.500000	28.0	2.5	11.17	4.42e-20	12.49	2.48e-21
-chrIV-97	chrIV	927112	927182	+	157.3	0.613	28.000000	27.5	2.6	10.59	1.17e-18	14.82	2.73e-22
-chrVII-75	chrVII	640482	640552	+	157.3	0.766	28.000000	27.5	2.3	11.81	7.95e-20	20.57	6.47e-26
-chrII-52	chrII	477127	477197	+	154.4	0.667	27.000000	27.0	1.9	14.36	3.83e-22	12.50	1.22e-20
-chrIII-18	chrIII	299119	299189	+	154.4	0.633	29.500000	27.0	2.3	11.60	7.95e-20	20.36	6.69e-25
-chrXIII-65	chrXIII	773099	773169	+	154.4	0.667	29.500000	27.0	2.1	13.11	3.76e-21	7.08	1.15e-14
-chrIII-15	chrIII	85418	85488	+	148.7	0.780	31.000000	26.0	2.1	12.10	1.37e-19	14.66	1.33e-21
-chrVI-13	chrVI	225140	225210	+	148.7	0.614	27.000000	26.0	1.6	16.13	1.30e-22	8.32	9.04e-16
-chrX-38	chrX	160333	160403	+	148.7	0.724	28.500000	26.0	1.2	22.33	4.22e-26	14.12	3.30e-21
-chrIV-107	chrIV	1183661	1183731	+	145.8	0.735	26.000000	25.5	2.2	11.39	4.24e-18	13.14	9.93e-20
-chrXVI-85	chrXVI	822074	822144	+	143.0	0.687	27.000000	25.5	2.5	10.17	5.57e-17	11.54	2.00e-18
-chrVII-86	chrVII	856920	856990	+	137.2	0.600	26.500000	26.5	2.3	11.38	9.25e-19	10.20	1.40e-16

scripts/data/reprocessed_mahendrawada_results/peaks/ACA1xstandard/B/ACA1xstandard_B_peaks_summits.txt

@@ -1,270 +0,0 @@
-chrXVI	679038	679039	chrXVI-1	0	+
-chrVI	31361	31362	chrVI-1	0	+
-chrXIII	306331	306332	chrXIII-2	0	+
-chrXIII	540664	540665	chrXIII-1	0	+
-chrXIII	306591	306592	chrXIII-3	0	+
-chrXV	908722	908723	chrXV-1	0	+
-chrXII	11125	11126	chrXII-48	0	+
-chrXIV	6527	6528	chrXIV-1	0	+
-chrXI	231088	231089	chrXI-1	0	+
-chrXV	1084691	1084692	chrXV-3	0	+
-chrXIV	652060	652061	chrXIV-2	0	+
-chrVII	483692	483693	chrVII-1	0	+
-chrIX	386594	386595	chrIX-2	0	+
-chrIV	976751	976752	chrIV-1	0	+
-chrX	703610	703611	chrX-3	0	+
-chrX	173312	173313	chrX-2	0	+
-chrVII	1084423	1084424	chrVII-3	0	+
-chrXV	28042	28043	chrXV-2	0	+
-chrVII	884133	884134	chrVII-2	0	+
-chrXVI	503074	503075	chrXVI-5	0	+
-chrXVI	432089	432090	chrXVI-2	0	+
-chrI	29911	29912	chrI-1	0	+
-chrIV	1525577	1525578	chrIV-2	0	+
-chrXIV	301962	301963	chrXIV-3	0	+
-chrXVI	431860	431861	chrXVI-3	0	+
-chrV	85081	85082	chrV-1	0	+
-chrVII	384974	384975	chrVII-4	0	+
-chrXIII	5465	5466	chrXIII-4	0	+
-chrXII	5559	5560	chrXII-46	0	+
-chrIX	22375	22376	chrIX-3	0	+
-chrXI	356132	356133	chrXI-2	0	+
-chrX	69019	69020	chrX-4	0	+
-chrII	5756	5757	chrII-1	0	+
-chrXI	518264	518265	chrXI-3	0	+
-chrXVI	6470	6471	chrXVI-4	0	+
-chrXII	368431	368432	chrXII-45	0	+
-chrXII	371011	371012	chrXII-47	0	+
-chrXIV	301305	301306	chrXIV-5	0	+
-chrXV	232152	232153	chrXV-4	0	+
-chrXII	1071681	1071682	chrXII-49	0	+
-chrXIV	559518	559519	chrXIV-4	0	+
-chrIV	976610	976611	chrIV-3	0	+
-chrIV	1345435	1345436	chrIV-4	0	+
-chrII	371091	371092	chrII-2	0	+
-chrXIV	441132	441133	chrXIV-6	0	+
-chrXV	988535	988536	chrXV-5	0	+
-chrXI	355932	355933	chrXI-4	0	+
-chrXIII	287694	287695	chrXIII-9	0	+
-chrVII	483240	483241	chrVII-5	0	+
-chrVIII	557048	557049	chrVIII-1	0	+
-chrXII	1065241	1065242	chrXII-50	0	+
-chrXII	1071846	1071847	chrXII-51	0	+
-chrXIII	511019	511020	chrXIII-5	0	+
-chrXI	518938	518939	chrXI-6	0	+
-chrXIV	739412	739413	chrXIV-7	0	+
-chrXV	904245	904246	chrXV-6	0	+
-chrXI	518705	518706	chrXI-5	0	+
-chrXIII	302835	302836	chrXIII-10	0	+
-chrVI	4598	4599	chrVI-2	0	+
-chrX	220393	220394	chrX-5	0	+
-chrXIII	347198	347199	chrXIII-8	0	+
-chrV	85382	85383	chrV-2	0	+
-chrXIII	287377	287378	chrXIII-11	0	+
-chrVII	23376	23377	chrVII-6	0	+
-chrXIII	557231	557232	chrXIII-6	0	+
-chrV	268617	268618	chrV-3	0	+
-chrXIII	653250	653251	chrXIII-7	0	+
-chrVII	702994	702995	chrVII-7	0	+
-chrXII	950827	950828	chrXII-52	0	+
-chrX	525969	525970	chrX-6	0	+
-chrIV	599973	599974	chrIV-8	0	+
-chrIV	539102	539103	chrIV-7	0	+
-chrV	123323	123324	chrV-4	0	+
-chrXII	809372	809373	chrXII-53	0	+
-chrXV	383039	383040	chrXV-7	0	+
-chrXIII	915276	915277	chrXIII-12	0	+
-chrII	136077	136078	chrII-3	0	+
-chrIV	132903	132904	chrIV-6	0	+
-chrXIII	798066	798067	chrXIII-13	0	+
-chrXV	385022	385023	chrXV-8	0	+
-chrXVI	214961	214962	chrXVI-6	0	+
-chrVII	809942	809943	chrVII-10	0	+
-chrXVI	829382	829383	chrXVI-10	0	+
-chrIX	254531	254532	chrIX-4	0	+
-chrVII	987540	987541	chrVII-9	0	+
-chrXIV	301086	301087	chrXIV-9	0	+
-chrXVI	645797	645798	chrXVI-9	0	+
-chrXIV	662226	662227	chrXIV-8	0	+
-chrXVI	527080	527081	chrXVI-8	0	+
-chrII	556006	556007	chrII-5	0	+
-chrXIII	906077	906078	chrXIII-14	0	+
-chrXVI	502557	502558	chrXVI-7	0	+
-chrVII	610072	610073	chrVII-12	0	+
-chrXV	882234	882235	chrXV-11	0	+
-chrII	554803	554804	chrII-4	0	+
-chrXVI	340764	340765	chrXVI-13	0	+
-chrXVI	502873	502874	chrXVI-11	0	+
-chrXV	978861	978862	chrXV-10	0	+
-chrXIII	472971	472972	chrXIII-15	0	+
-chrIV	546211	546212	chrIV-9	0	+
-chrXVI	193199	193200	chrXVI-12	0	+
-chrVIII	122500	122501	chrVIII-2	0	+
-chrXVI	40447	40448	chrXVI-15	0	+
-chrIV	387078	387079	chrIV-10	0	+
-chrIV	1469047	1469048	chrIV-12	0	+
-chrV	284863	284864	chrV-6	0	+
-chrIV	507490	507491	chrIV-11	0	+
-chrXVI	566967	566968	chrXVI-17	0	+
-chrVII	413445	413446	chrVII-13	0	+
-chrXIII	388211	388212	chrXIII-16	0	+
-chrV	570526	570527	chrV-5	0	+
-chrVII	592925	592926	chrVII-11	0	+
-chrXI	355668	355669	chrXI-7	0	+
-chrXV	988030	988031	chrXV-13	0	+
-chrVI	183177	183178	chrVI-3	0	+
-chrXI	99709	99710	chrXI-8	0	+
-chrXVI	591382	591383	chrXVI-18	0	+
-chrXVI	739700	739701	chrXVI-19	0	+
-chrII	140621	140622	chrII-7	0	+
-chrIV	543842	543843	chrIV-15	0	+
-chrVII	785904	785905	chrVII-16	0	+
-chrIV	550955	550956	chrIV-13	0	+
-chrXV	168093	168094	chrXV-16	0	+
-chrXV	882528	882529	chrXV-14	0	+
-chrII	561167	561168	chrII-8	0	+
-chrIV	730444	730445	chrIV-14	0	+
-chrIV	721775	721776	chrIV-16	0	+
-chrXI	514624	514625	chrXI-9	0	+
-chrXIII	388446	388447	chrXIII-18	0	+
-chrXVI	645282	645283	chrXVI-14	0	+
-chrIII	78304	78305	chrIII-2	0	+
-chrV	284651	284652	chrV-7	0	+
-chrXII	370414	370415	chrXII-55	0	+
-chrXVI	297057	297058	chrXVI-16	0	+
-chrV	303536	303537	chrV-9	0	+
-chrVIII	296941	296942	chrVIII-3	0	+
-chrIII	122793	122794	chrIII-1	0	+
-chrVII	324088	324089	chrVII-18	0	+
-chrVII	592627	592628	chrVII-17	0	+
-chrXIII	798291	798292	chrXIII-19	0	+
-chrV	141062	141063	chrV-8	0	+
-chrVII	650981	650982	chrVII-20	0	+
-chrXV	109803	109804	chrXV-19	0	+
-chrXV	1043268	1043269	chrXV-20	0	+
-chrXVI	453804	453805	chrXVI-23	0	+
-chrV	569622	569623	chrV-11	0	+
-chrXIII	653061	653062	chrXIII-21	0	+
-chrV	77721	77722	chrV-12	0	+
-chrXV	285803	285804	chrXV-21	0	+
-chrIV	357372	357373	chrIV-18	0	+
-chrXIII	653482	653483	chrXIII-23	0	+
-chrXV	742478	742479	chrXV-17	0	+
-chrI	71447	71448	chrI-4	0	+
-chrXIII	852343	852344	chrXIII-20	0	+
-chrXVI	455265	455266	chrXVI-25	0	+
-chrIV	369131	369132	chrIV-19	0	+
-chrXII	954964	954965	chrXII-59	0	+
-chrXVI	280210	280211	chrXVI-24	0	+
-chrVII	905448	905449	chrVII-19	0	+
-chrIII	123897	123898	chrIII-4	0	+
-chrIV	1468769	1468770	chrIV-21	0	+
-chrXI	231684	231685	chrXI-12	0	+
-chrXV	520679	520680	chrXV-22	0	+
-chrXV	989524	989525	chrXV-18	0	+
-chrIV	1080797	1080798	chrIV-22	0	+
-chrXII	636344	636345	chrXII-57	0	+
-chrVII	1000321	1000322	chrVII-23	0	+
-chrXI	230704	230705	chrXI-11	0	+
-chrII	375978	375979	chrII-11	0	+
-chrXIII	661963	661964	chrXIII-22	0	+
-chrXIV	355478	355479	chrXIV-13	0	+
-chrXIV	498679	498680	chrXIV-12	0	+
-chrXV	27682	27683	chrXV-28	0	+
-chrIV	636214	636215	chrIV-24	0	+
-chrV	242356	242357	chrV-14	0	+
-chrVII	809709	809710	chrVII-25	0	+
-chrXIII	653766	653767	chrXIII-25	0	+
-chrXVI	425658	425659	chrXVI-28	0	+
-chrXVI	840749	840750	chrXVI-33	0	+
-chrVII	987097	987098	chrVII-24	0	+
-chrXVI	297382	297383	chrXVI-32	0	+
-chrXI	615044	615045	chrXI-14	0	+
-chrXIII	287077	287078	chrXIII-26	0	+
-chrII	476766	476767	chrII-13	0	+
-chrII	419386	419387	chrII-12	0	+
-chrV	268460	268461	chrV-15	0	+
-chrV	335542	335543	chrV-17	0	+
-chrXIV	576279	576280	chrXIV-16	0	+
-chrXVI	38674	38675	chrXVI-21	0	+
-chrVII	620099	620100	chrVII-32	0	+
-chrXV	21432	21433	chrXV-30	0	+
-chrII	466415	466416	chrII-16	0	+
-chrXIII	362288	362289	chrXIII-30	0	+
-chrII	165117	165118	chrII-14	0	+
-chrVII	428170	428171	chrVII-31	0	+
-chrXII	36884	36885	chrXII-66	0	+
-chrXII	187600	187601	chrXII-68	0	+
-chrII	350997	350998	chrII-15	0	+
-chrX	294738	294739	chrX-11	0	+
-chrV	260163	260164	chrV-19	0	+
-chrXI	382241	382242	chrXI-18	0	+
-chrXIII	556951	556952	chrXIII-33	0	+
-chrXVI	586029	586030	chrXVI-36	0	+
-chrII	221411	221412	chrII-19	0	+
-chrIV	1080521	1080522	chrIV-31	0	+
-chrVI	176689	176690	chrVI-6	0	+
-chrIX	139428	139429	chrIX-10	0	+
-chrIX	169872	169873	chrIX-14	0	+
-chrVII	959567	959568	chrVII-36	0	+
-chrXVI	641756	641757	chrXVI-38	0	+
-chrXI	329597	329598	chrXI-23	0	+
-chrXIV	500715	500716	chrXIV-17	0	+
-chrI	71053	71054	chrI-7	0	+
-chrV	311618	311619	chrV-25	0	+
-chrIV	1490250	1490251	chrIV-37	0	+
-chrXII	723555	723556	chrXII-69	0	+
-chrXIV	662532	662533	chrXIV-22	0	+
-chrXV	216650	216651	chrXV-40	0	+
-chrV	117861	117862	chrV-23	0	+
-chrIX	249104	249105	chrIX-16	0	+
-chrX	663157	663158	chrX-13	0	+
-chrXV	218757	218758	chrXV-43	0	+
-chrVII	1000557	1000558	chrVII-40	0	+
-chrX	268440	268441	chrX-15	0	+
-chrII	221692	221693	chrII-27	0	+
-chrIV	234499	234500	chrIV-40	0	+
-chrX	123613	123614	chrX-16	0	+
-chrXI	382039	382040	chrXI-20	0	+
-chrXII	950385	950386	chrXII-79	0	+
-chrVIII	236367	236368	chrVIII-11	0	+
-chrXVI	576175	576176	chrXVI-43	0	+
-chrVII	271540	271541	chrVII-48	0	+
-chrVII	766433	766434	chrVII-44	0	+
-chrXIII	353163	353164	chrXIII-38	0	+
-chrXV	671017	671018	chrXV-41	0	+
-chrVII	404894	404895	chrVII-49	0	+
-chrXVI	74999	75000	chrXVI-48	0	+
-chrX	639657	639658	chrX-20	0	+
-chrI	68212	68213	chrI-9	0	+
-chrVII	20621	20622	chrVII-47	0	+
-chrIV	366362	366363	chrIV-56	0	+
-chrXII	921677	921678	chrXII-89	0	+
-chrXIII	434387	434388	chrXIII-48	0	+
-chrVII	733247	733248	chrVII-55	0	+
-chrXI	67864	67865	chrXI-26	0	+
-chrII	251494	251495	chrII-34	0	+
-chrIX	132076	132077	chrIX-19	0	+
-chrII	408832	408833	chrII-37	0	+
-chrIV	916972	916973	chrIV-49	0	+
-chrII	251072	251073	chrII-39	0	+
-chrV	261594	261595	chrV-36	0	+
-chrXIV	335871	335872	chrXIV-31	0	+
-chrVII	976978	976979	chrVII-56	0	+
-chrXI	322396	322397	chrXI-29	0	+
-chrII	731485	731486	chrII-45	0	+
-chrXVI	833009	833010	chrXVI-73	0	+
-chrII	392649	392650	chrII-41	0	+
-chrXIV	359424	359425	chrXIV-41	0	+
-chrVII	905779	905780	chrVII-62	0	+
-chrIV	927147	927148	chrIV-97	0	+
-chrVII	640517	640518	chrVII-75	0	+
-chrII	477162	477163	chrII-52	0	+
-chrIII	299154	299155	chrIII-18	0	+
-chrXIII	773134	773135	chrXIII-65	0	+
-chrIII	85453	85454	chrIII-15	0	+
-chrVI	225175	225176	chrVI-13	0	+
-chrX	160368	160369	chrX-38	0	+
-chrIV	1183696	1183697	chrIV-107	0	+
-chrXVI	822109	822110	chrXVI-85	0	+
-chrVII	856955	856956	chrVII-86	0	+

scripts/data/reprocessed_mahendrawada_results/peaks/ACA1xstandard/C/ACA1xstandard_C_annotatePeaks.err

@@ -1,46 +0,0 @@
-
-	Using Custom Genome
-	Peak file = results/peaks/ACA1xstandard/C/ACA1xstandard_C_peaks.txt
-	Genome = S288C_reference_sequence_R64-5-1_20240529_chr_normalized.fa
-	Organism = unknown
-	Custom annotation GTF file: /ref/mblab/data/yeast_data/reprocess_mahendrawada/mahendrawada_slurm_pipeline/sacCer3.ensGene.gtf (using transcript_id)
-	Peak/BED file conversion summary:
-		BED/Header formatted lines: 0
-		peakfile formatted lines: 155
-		Duplicated Peak IDs: 0
-
-	Peak File Statistics:
-		Total Peaks: 155
-		Redundant Peak IDs: 0
-		Peaks lacking information: 0 (need at least 5 columns per peak)
-		Peaks with misformatted coordinates: 0 (should be integer)
-		Peaks with misformatted strand: 0 (should be either +/- or 0/1)
-
-	Peak file looks good!
-
-	Reading Positions...
-	-----------------------
-	offset=0
-	Finding Closest TSS...
-	Processing custom annotation file...
-	Features that will be considered:
-		exon
-
-	7507 lines contained useful feature information
-	Parsing GTF to make an annotation table from attributes...
-	Features that will be considered:
-		exon
-
-	7507 lines contained useful feature information
-assignGenomeAnnotation: error while loading shared libraries: libstdc++.so.6: cannot open shared object file: No such file or directory
-	Could not find basic annotation file (0.298689881413342.2.tmp)
-	Features that will be considered:
-		exon
-
-	7507 lines contained useful feature information
-assignGenomeAnnotation: error while loading shared libraries: libstdc++.so.6: cannot open shared object file: No such file or directory
-	Counting Tags in Peaks from each directory...
-	Organism: unknown
-	Outputing Annotation File...
-	Done annotating peaks file
-

scripts/data/reprocessed_mahendrawada_results/peaks/ACA1xstandard/C/ACA1xstandard_C_annotated_peaks.txt

@@ -1,156 +0,0 @@
-PeakID (cmd=annotatePeaks.pl results/peaks/ACA1xstandard/C/ACA1xstandard_C_peaks.txt /ref/mblab/data/S288C_R64/S288C_reference_genome_R64-5-1_20240529/S288C_reference_sequence_R64-5-1_20240529_chr_normalized.fa -gtf /ref/mblab/data/yeast_data/reprocess_mahendrawada/mahendrawada_slurm_pipeline/sacCer3.ensGene.gtf)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type
-chrXV-1	chrXV	908652	908856	+	8162.4	0.742	NA	NA	-589	YOR317W_mRNA	YOR317W	YOR317W_mRNA			YOR317W			
-chrXVI-1	chrXVI	38637	38841	+	8117.6	0.839	NA	NA	-382	YPL266W_mRNA	YPL266W	YPL266W_mRNA			YPL266W			
-chrVII-1	chrVII	208461	208665	+	7404.4	0.908	NA	NA	-443	YGL157W_mRNA	YGL157W	YGL157W_mRNA			YGL157W			
-chrIII-2	chrIII	1163	1367	+	6384.5	0.847	NA	NA	-127	YCL076W_mRNA	YCL076W	YCL076W_mRNA			YCL076W			
-chrXIII-1	chrXIII	540457	540661	+	6343.2	0.716	NA	NA	-503	YMR135C_mRNA	YMR135C	YMR135C_mRNA			YMR135C			
-chrIII-1	chrIII	315495	315699	+	6095.1	0.796	NA	NA	591	YCR108C_mRNA	YCR108C	YCR108C_mRNA			YCR108C			
-chrXV-2	chrXV	924	1128	+	5878.0	0.809	NA	NA	312	YOL166C_mRNA	YOL166C	YOL166C_mRNA			YOL166C			
-chrXIV-1	chrXIV	559565	559769	+	5878.0	0.855	NA	NA	-147	YNL036W_mRNA	YNL036W	YNL036W_mRNA			YNL036W			
-chrVII-2	chrVII	780577	780781	+	5740.2	0.767	NA	NA	280	YGR144W_mRNA	YGR144W	YGR144W_mRNA			YGR144W			
-chrXIII-2	chrXIII	306339	306543	+	5736.7	0.825	NA	NA	-848	YMR016C_mRNA	YMR016C	YMR016C_mRNA			YMR016C			
-chrIV-1	chrIV	917014	917218	+	5375.0	0.804	NA	NA	-455	YDR227W_mRNA	YDR227W	YDR227W_mRNA			YDR227W			
-chrXVI-2	chrXVI	679015	679219	+	5313.0	0.810	NA	NA	166	YPR064W_mRNA	YPR064W	YPR064W_mRNA			YPR064W			
-chrIII-3	chrIII	154885	155089	+	5095.9	0.869	NA	NA	109	YCR020C-A_mRNA	YCR020C-A	YCR020C-A_mRNA			YCR020C-A			
-chrXVI-5	chrXVI	739730	739934	+	4527.4	0.888	NA	NA	-229	YPR106W_mRNA	YPR106W	YPR106W_mRNA			YPR106W			
-chrX-1	chrX	703596	703800	+	4424.0	0.838	NA	NA	-187	YJR146W_mRNA	YJR146W	YJR146W_mRNA			YJR146W			
-chrV-1	chrV	569316	569520	+	4148.4	0.821	NA	NA	489	YER188C-A_mRNA	YER188C-A	YER188C-A_mRNA			YER188C-A			
-chrXVI-3	chrXVI	431867	432071	+	3917.5	0.829	NA	NA	74	YPL062W_mRNA	YPL062W	YPL062W_mRNA			YPL062W			
-chrXI-1	chrXI	230884	231088	+	3748.7	0.737	NA	NA	-1106	YKL110C_mRNA	YKL110C	YKL110C_mRNA			YKL110C			
-chrII-1	chrII	731383	731587	+	3690.1	0.782	NA	NA	1098	YBR259W_mRNA	YBR259W	YBR259W_mRNA			YBR259W			
-chrXII-17	chrXII	796838	797042	+	3559.2	0.829	NA	NA	138	YLR334C_mRNA	YLR334C	YLR334C_mRNA			YLR334C			
-chrVII-4	chrVII	483377	483581	+	3424.8	0.651	NA	NA	219	YGL007W_mRNA	YGL007W	YGL007W_mRNA			YGL007W			
-chrXVI-6	chrXVI	189039	189243	+	3304.2	0.803	NA	NA	-13	YPL189W_mRNA	YPL189W	YPL189W_mRNA			YPL189W			
-chrXVI-4	chrXVI	296911	297115	+	2959.7	0.841	NA	NA	-366	YPL137C_mRNA	YPL137C	YPL137C_mRNA			YPL137C			
-chrII-4	chrII	195900	196104	+	2818.4	0.779	NA	NA	-1492	tI(AAU)B_tRNA	tI(AAU)B	tI(AAU)B_tRNA			tI(AAU)B			
-chrVII-3	chrVII	483733	483937	+	2663.4	0.548	NA	NA	575	YGL007W_mRNA	YGL007W	YGL007W_mRNA			YGL007W			
-chrVI-1	chrVI	23118	23322	+	2649.6	0.756	NA	NA	-203	YFL053W_mRNA	YFL053W	YFL053W_mRNA			YFL053W			
-chrXVI-7	chrXVI	503088	503292	+	2642.7	0.681	NA	NA	-160	YPL025C_mRNA	YPL025C	YPL025C_mRNA			YPL025C			
-chrVII-6	chrVII	870	1074	+	2570.3	0.749	NA	NA	-1818	YGL263W_mRNA	YGL263W	YGL263W_mRNA			YGL263W			
-chrII-3	chrII	371490	371694	+	2487.6	0.754	NA	NA	-893	YBR066C_mRNA	YBR066C	YBR066C_mRNA			YBR066C			
-chrXI-2	chrXI	356082	356286	+	2463.5	0.558	NA	NA	-138	YKL044W_mRNA	YKL044W	YKL044W_mRNA			YKL044W			
-chrXV-3	chrXV	383114	383318	+	2439.4	0.868	NA	NA	1204	YOR028C_mRNA	YOR028C	YOR028C_mRNA			YOR028C			
-chrVII-5	chrVII	20321	20525	+	2391.2	0.730	NA	NA	-555	YGL255W_mRNA	YGL255W	YGL255W_mRNA			YGL255W			
-chrXIII-5	chrXIII	608098	608302	+	2391.2	0.819	NA	NA	11	YMR172C-A_mRNA	YMR172C-A	YMR172C-A_mRNA			YMR172C-A			
-chrIV-2	chrIV	976503	976707	+	2363.6	0.776	NA	NA	624	YDR260C_mRNA	YDR260C	YDR260C_mRNA			YDR260C			
-chrIX-1	chrIX	386689	386893	+	2342.9	0.758	NA	NA	-1090	YIR018C-A_mRNA	YIR018C-A	YIR018C-A_mRNA			YIR018C-A			
-chrXIV-6	chrXIV	7483	7687	+	2301.6	0.814	NA	NA	420	YNL337W_mRNA	YNL337W	YNL337W_mRNA			YNL337W			
-chrXII-21	chrXII	710848	711052	+	2284.4	0.896	NA	NA	-814	YLR286C_mRNA	YLR286C	YLR286C_mRNA			YLR286C			
-chrIX-2	chrIX	22157	22361	+	2267.1	0.745	NA	NA	2412	YIL170W	YIL170W	YIL170W			YIL170W			NA
-chrXV-8	chrXV	1083634	1083838	+	2256.8	0.806	NA	NA	633	YOR394C-A_mRNA	YOR394C-A	YOR394C-A_mRNA			YOR394C-A			
-chrIV-7	chrIV	1095079	1095283	+	2212.0	0.882	NA	NA	280	tF(GAA)D_tRNA	tF(GAA)D	tF(GAA)D_tRNA			tF(GAA)D			
-chrII-2	chrII	419704	419908	+	2205.1	0.659	NA	NA	-642	YBR085C-A_mRNA	YBR085C-A	YBR085C-A_mRNA			YBR085C-A			
-chrVIII-3	chrVIII	5575	5779	+	2191.3	0.669	NA	NA	120	YHL048C-A_mRNA	YHL048C-A	YHL048C-A_mRNA			YHL048C-A			
-chrIV-3	chrIV	722609	722813	+	2167.2	0.792	NA	NA	-1414	YDR133C_mRNA	YDR133C	YDR133C_mRNA			YDR133C			
-chrXIII-3	chrXIII	433174	433378	+	2167.2	0.657	NA	NA	-1151	YMR082C_mRNA	YMR082C	YMR082C_mRNA			YMR082C			
-chrIV-13	chrIV	1062969	1063173	+	2160.3	0.828	NA	NA	-280	YDR300C_mRNA	YDR300C	YDR300C_mRNA			YDR300C			
-chrVI-2	chrVI	261323	261527	+	2108.6	0.909	NA	NA	-1992	YFR054C_mRNA	YFR054C	YFR054C_mRNA			YFR054C			
-chrII-5	chrII	140599	140803	+	2070.7	0.801	NA	NA	-441	YBL042C_mRNA	YBL042C	YBL042C_mRNA			YBL042C			
-chrXVI-9	chrXVI	7290	7494	+	2063.9	0.816	NA	NA	1035	YPL282C_mRNA	YPL282C	YPL282C_mRNA			YPL282C			
-chrVI-3	chrVI	31146	31350	+	2060.4	0.763	NA	NA	-708	YFL051C_mRNA	YFL051C	YFL051C_mRNA			YFL051C			
-chrVII-7	chrVII	987359	987563	+	2022.5	0.705	NA	NA	-588	YGR249W_mRNA	YGR249W	YGR249W_mRNA			YGR249W			
-chrXV-4	chrXV	27937	28141	+	2019.1	0.722	NA	NA	955	YOL155W-A_mRNA	YOL155W-A	YOL155W-A_mRNA			YOL155W-A			
-chrVII-8	chrVII	592362	592566	+	1994.9	0.696	NA	NA	-22	YGR050C_mRNA	YGR050C	YGR050C_mRNA			YGR050C			
-chrXV-5	chrXV	987912	988116	+	1991.5	0.688	NA	NA	768	YOR348C_mRNA	YOR348C	YOR348C_mRNA			YOR348C			
-chrX-2	chrX	21443	21647	+	1991.5	0.699	NA	NA	-428	YJL218W_mRNA	YJL218W	YJL218W_mRNA			YJL218W			
-chrXI-4	chrXI	863	1067	+	1950.1	0.788	NA	NA	514	YKL225W_mRNA	YKL225W	YKL225W_mRNA			YKL225W			
-chrII-7	chrII	6682	6886	+	1898.5	0.686	NA	NA	949	YBL108C-A_mRNA	YBL108C-A	YBL108C-A_mRNA			YBL108C-A			
-chrXIV-2	chrXIV	302102	302306	+	1884.7	0.709	NA	NA	-476	YNL178W_mRNA	YNL178W	YNL178W_mRNA			YNL178W			
-chrXIII-4	chrXIII	271785	271989	+	1884.7	0.947	NA	NA	-306	YMR002W_mRNA	YMR002W	YMR002W_mRNA			YMR002W			
-chrVIII-5	chrVIII	205931	206135	+	1870.9	0.855	NA	NA	-429	YHR049W_mRNA	YHR049W	YHR049W_mRNA			YHR049W			
-chrIV-4	chrIV	538981	539185	+	1846.8	0.679	NA	NA	-616	YDR040C_mRNA	YDR040C	YDR040C_mRNA			YDR040C			
-chrXIII-6	chrXIII	557061	557265	+	1836.4	0.790	NA	NA	-688	YMR145C_mRNA	YMR145C	YMR145C_mRNA			YMR145C			
-chrXV-19	chrXV	974537	974741	+	1774.4	0.862	NA	NA	-1782	tM(CAU)O2_tRNA	tM(CAU)O2	tM(CAU)O2_tRNA			tM(CAU)O2			
-chrVII-10	chrVII	621675	621879	+	1767.5	0.743	NA	NA	22	YGR066C_mRNA	YGR066C	YGR066C_mRNA			YGR066C			
-chrXV-6	chrXV	989343	989547	+	1767.5	0.810	NA	NA	-344	YOR349W_mRNA	YOR349W	YOR349W_mRNA			YOR349W			
-chrXII-19	chrXII	368416	368620	+	1715.9	0.890	NA	NA	-263	YLR109W_mRNA	YLR109W	YLR109W_mRNA			YLR109W			
-chrXI-3	chrXI	2664	2868	+	1702.1	0.764	NA	NA	377	YKL223W_mRNA	YKL223W	YKL223W_mRNA			YKL223W			
-chrXII-23	chrXII	1064000	1064204	+	1698.6	0.778	NA	NA	1183	YLR461W_mRNA	YLR461W	YLR461W_mRNA			YLR461W			
-chrVIII-2	chrVIII	16822	17026	+	1695.2	0.650	NA	NA	-468	YHL041W_mRNA	YHL041W	YHL041W_mRNA			YHL041W			
-chrXIV-3	chrXIV	739318	739522	+	1688.3	0.768	NA	NA	-531	YNR060W_mRNA	YNR060W	YNR060W_mRNA			YNR060W			
-chrIX-4	chrIX	433068	433272	+	1671.1	0.662	NA	NA	551	YIR040C_mRNA	YIR040C	YIR040C_mRNA			YIR040C			
-chrXV-7	chrXV	979093	979297	+	1646.9	0.640	NA	NA	-1126	YOR344C_mRNA	YOR344C	YOR344C_mRNA			YOR344C			
-chrIV-5	chrIV	1468810	1469014	+	1646.9	0.843	NA	NA	-468	YDR508C_mRNA	YDR508C	YDR508C_mRNA			YDR508C			
-chrX-3	chrX	173208	173412	+	1622.8	0.813	NA	NA	-943	YJL130C_mRNA	YJL130C	YJL130C_mRNA			YJL130C			
-chrII-6	chrII	476860	477064	+	1553.9	0.852	NA	NA	-525	YBR117C_mRNA	YBR117C	YBR117C_mRNA			YBR117C			
-chrXII-20	chrXII	1071650	1071854	+	1509.1	0.839	NA	NA	-42	YLR466C-B_mRNA	YLR466C-B	YLR466C-B_mRNA			YLR466C-B			
-chrIX-6	chrIX	138348	138552	+	1502.2	0.714	NA	NA	-573	YIL119C_mRNA	YIL119C	YIL119C_mRNA			YIL119C			
-chrIV-6	chrIV	600070	600274	+	1502.2	0.645	NA	NA	-621	YDR077W_mRNA	YDR077W	YDR077W_mRNA			YDR077W			
-chrXVI-8	chrXVI	645294	645498	+	1491.9	0.749	NA	NA	-554	YPR036W-A_mRNA	YPR036W-A	YPR036W-A_mRNA			YPR036W-A			
-chrV-2	chrV	85161	85365	+	1454.0	0.648	NA	NA	282	YEL035C_mRNA	YEL035C	YEL035C_mRNA			YEL035C			
-chrXIII-7	chrXIII	798073	798277	+	1429.9	0.850	NA	NA	-250	YMR265C_mRNA	YMR265C	YMR265C_mRNA			YMR265C			
-chrXIII-9	chrXIII	510824	511028	+	1426.4	0.778	NA	NA	149	YMR122C_mRNA	YMR122C	YMR122C_mRNA			YMR122C			
-chrI-1	chrI	29565	29769	+	1385.1	0.707	NA	NA	-1699	YAL063C_mRNA	YAL063C	YAL063C_mRNA			YAL063C			
-chrVII-12	chrVII	609921	610125	+	1385.1	0.736	NA	NA	439	snR48_snoRNA	snR48	snR48_snoRNA			snR48			
-chrIX-3	chrIX	438792	438996	+	1371.3	0.729	NA	NA	-2911	YIR042C_mRNA	YIR042C	YIR042C_mRNA			YIR042C			
-chrIV-16	chrIV	1224326	1224530	+	1371.3	0.733	NA	NA	-34	YDR374C_mRNA	YDR374C	YDR374C_mRNA			YDR374C			
-chrXIV-10	chrXIV	76996	77200	+	1371.3	0.760	NA	NA	152	YNL295W_mRNA	YNL295W	YNL295W_mRNA			YNL295W			
-chrVII-11	chrVII	23386	23590	+	1364.4	0.866	NA	NA	-447	YGL253W_mRNA	YGL253W	YGL253W_mRNA			YGL253W			
-chrV-4	chrV	159243	159447	+	1364.4	0.847	NA	NA	-227	YER003C_mRNA	YER003C	YER003C_mRNA			YER003C			
-chrIV-9	chrIV	1314979	1315183	+	1361.0	0.776	NA	NA	2692	YDR422C_mRNA	YDR422C	YDR422C_mRNA			YDR422C			
-chrIV-8	chrIV	386869	387073	+	1336.9	0.754	NA	NA	-1384	YDL037C_mRNA	YDL037C	YDL037C_mRNA			YDL037C			
-chrXIV-7	chrXIV	771802	772006	+	1323.1	0.648	NA	NA	-436	YNR071C_mRNA	YNR071C	YNR071C_mRNA			YNR071C			
-chrIV-11	chrIV	132912	133116	+	1316.2	0.797	NA	NA	-423	YDL182W_mRNA	YDL182W	YDL182W_mRNA			YDL182W			
-chrXI-5	chrXI	514304	514508	+	1312.7	0.800	NA	NA	-657	YKR039W_mRNA	YKR039W	YKR039W_mRNA			YKR039W			
-chrI-2	chrI	68393	68597	+	1292.1	0.721	NA	NA	-975	YAL040C_mRNA	YAL040C	YAL040C_mRNA			YAL040C			
-chrVIII-6	chrVIII	172785	172989	+	1285.2	0.836	NA	NA	83	YHR031C_mRNA	YHR031C	YHR031C_mRNA			YHR031C			
-chrIV-14	chrIV	1459985	1460189	+	1271.4	0.651	NA	NA	-867	YDR505C_mRNA	YDR505C	YDR505C_mRNA			YDR505C			
-chrXII-27	chrXII	977102	977306	+	1271.4	0.822	NA	NA	-1148	tN(GUU)L_tRNA	tN(GUU)L	tN(GUU)L_tRNA			tN(GUU)L			
-chrV-3	chrV	259972	260176	+	1271.4	0.851	NA	NA	-435	YER053C_mRNA	YER053C	YER053C_mRNA			YER053C			
-chrXV-9	chrXV	1058794	1058998	+	1257.6	0.673	NA	NA	473	YOR381W-A_mRNA	YOR381W-A	YOR381W-A_mRNA			YOR381W-A			
-chrXVI-11	chrXVI	828966	829170	+	1250.7	0.702	NA	NA	-850	YPR149W_mRNA	YPR149W	YPR149W_mRNA			YPR149W			
-chrXV-10	chrXV	494308	494512	+	1240.4	0.807	NA	NA	-717	YOR092W_mRNA	YOR092W	YOR092W_mRNA			YOR092W			
-chrVII-14	chrVII	1083359	1083563	+	1236.9	0.609	NA	NA	-732	YGR295C_mRNA	YGR295C	YGR295C_mRNA			YGR295C			
-chrXI-8	chrXI	329618	329822	+	1223.2	0.856	NA	NA	-277	YKL059C_mRNA	YKL059C	YKL059C_mRNA			YKL059C			
-chrXVI-10	chrXVI	502572	502776	+	1212.8	0.655	NA	NA	356	YPL025C_mRNA	YPL025C	YPL025C_mRNA			YPL025C			
-chrXVI-13	chrXVI	554155	554359	+	1209.4	0.805	NA	NA	71	YPL002C_mRNA	YPL002C	YPL002C_mRNA			YPL002C			
-chrXI-6	chrXI	518476	518680	+	1188.7	0.632	NA	NA	-12	YKR040C_mRNA	YKR040C	YKR040C_mRNA			YKR040C			
-chrXV-14	chrXV	795360	795564	+	1188.7	0.869	NA	NA	-130	YOR245C_mRNA	YOR245C	YOR245C_mRNA			YOR245C			
-chrXIII-8	chrXIII	10070	10274	+	1185.2	0.820	NA	NA	-26	YML131W_mRNA	YML131W	YML131W_mRNA			YML131W			
-chrVII-9	chrVII	7293	7497	+	1181.8	0.771	NA	NA	535	YGL260W_mRNA	YGL260W	YGL260W_mRNA			YGL260W			
-chrXIII-14	chrXIII	263071	263275	+	1168.0	0.812	NA	NA	-310	YML003W_mRNA	YML003W	YML003W_mRNA			YML003W			
-chrXIV-5	chrXIV	662314	662518	+	1168.0	0.841	NA	NA	-497	YNR017W_mRNA	YNR017W	YNR017W_mRNA			YNR017W			
-chrV-5	chrV	284615	284819	+	1157.7	0.761	NA	NA	-495	YER064C_mRNA	YER064C	YER064C_mRNA			YER064C			
-chrV-6	chrV	126162	126366	+	1154.2	0.870	NA	NA	-46	YEL016C_mRNA	YEL016C	YEL016C_mRNA			YEL016C			
-chrXII-37	chrXII	757224	757428	+	1154.2	0.904	NA	NA	286	YLR311C_mRNA	YLR311C	YLR311C_mRNA			YLR311C			
-chrX-6	chrX	294573	294777	+	1150.8	0.686	NA	NA	-124	YJL077W-A_mRNA	YJL077W-A	YJL077W-A_mRNA			YJL077W-A			
-chrXII-26	chrXII	950704	950908	+	1081.9	0.758	NA	NA	-333	YLR412C-A_mRNA	YLR412C-A	YLR412C-A_mRNA			YLR412C-A			
-chrVIII-7	chrVIII	48255	48459	+	1075.0	0.830	NA	NA	-389	YHL029C_mRNA	YHL029C	YHL029C_mRNA			YHL029C			
-chrXIV-9	chrXIV	652091	652295	+	1071.5	0.788	NA	NA	-272	YNR014W_mRNA	YNR014W	YNR014W_mRNA			YNR014W			
-chrII-9	chrII	691957	692161	+	1061.2	0.714	NA	NA	90	YBR237W_mRNA	YBR237W	YBR237W_mRNA			YBR237W			
-chrXIII-12	chrXIII	653495	653699	+	1061.2	0.683	NA	NA	-437	YMR195W_mRNA	YMR195W	YMR195W_mRNA			YMR195W			
-chrXVI-14	chrXVI	214772	214976	+	1054.3	0.685	NA	NA	-912	YPL177C_mRNA	YPL177C	YPL177C_mRNA			YPL177C			
-chrXV-11	chrXV	638828	639032	+	1044.0	0.743	NA	NA	337	YOR161C-C_mRNA	YOR161C-C	YOR161C-C_mRNA			YOR161C-C			
-chrXIII-13	chrXIII	472617	472821	+	1040.5	0.689	NA	NA	-367	YMR102C_mRNA	YMR102C	YMR102C_mRNA			YMR102C			
-chrIX-8	chrIX	254543	254747	+	1037.1	0.766	NA	NA	102	YIL054W_mRNA	YIL054W	YIL054W_mRNA			YIL054W			
-chrXIV-8	chrXIV	440953	441157	+	1023.3	0.822	NA	NA	-136	YNL097C-B_mRNA	YNL097C-B	YNL097C-B_mRNA			YNL097C-B			
-chrXV-12	chrXV	521023	521227	+	1019.9	0.622	NA	NA	-228	YOR107W_mRNA	YOR107W	YOR107W_mRNA			YOR107W			
-chrXI-7	chrXI	99723	99927	+	1016.4	0.650	NA	NA	-846	YKL182W_mRNA	YKL182W	YKL182W_mRNA			YKL182W			
-chrXVI-15	chrXVI	585890	586094	+	999.2	0.759	NA	NA	-407	YPR013C_mRNA	YPR013C	YPR013C_mRNA			YPR013C			
-chrV-7	chrV	42435	42639	+	992.3	0.802	NA	NA	87	YEL059C-A_mRNA	YEL059C-A	YEL059C-A_mRNA			YEL059C-A			
-chrXIV-19	chrXIV	781223	781427	+	992.3	0.854	NA	NA	278	YNR075C-A_mRNA	YNR075C-A	YNR075C-A_mRNA			YNR075C-A			
-chrIV-23	chrIV	1345344	1345548	+	978.5	0.757	NA	NA	-201	YDR442W_mRNA	YDR442W	YDR442W_mRNA			YDR442W			
-chrVII-15	chrVII	384853	385057	+	978.5	0.674	NA	NA	-241	YGL062W_mRNA	YGL062W	YGL062W_mRNA			YGL062W			
-chrVIII-9	chrVIII	255273	255477	+	971.6	0.798	NA	NA	381	YHR077C_mRNA	YHR077C	YHR077C_mRNA			YHR077C			
-chrXIV-14	chrXIV	605442	605646	+	964.7	0.677	NA	NA	160	YNL015W_mRNA	YNL015W	YNL015W_mRNA			YNL015W			
-chrXVI-20	chrXVI	404106	404310	+	961.3	0.733	NA	NA	-125	YPL082C_mRNA	YPL082C	YPL082C_mRNA			YPL082C			
-chrI-3	chrI	190157	190361	+	957.8	0.772	NA	NA	66	YAR035W_mRNA	YAR035W	YAR035W_mRNA			YAR035W			
-chrII-8	chrII	555472	555676	+	940.6	0.638	NA	NA	-975	YBR158W_mRNA	YBR158W	YBR158W_mRNA			YBR158W			
-chrXII-30	chrXII	371051	371255	+	923.4	0.608	NA	NA	362	YLR112W_mRNA	YLR112W	YLR112W_mRNA			YLR112W			
-chrXII-31	chrXII	660169	660373	+	902.7	0.829	NA	NA	-445	YLR258W_mRNA	YLR258W	YLR258W_mRNA			YLR258W			
-chrXIII-16	chrXIII	287481	287685	+	882.0	0.677	NA	NA	-496	YMR011W_mRNA	YMR011W	YMR011W_mRNA			YMR011W			
-chrX-7	chrX	278806	279010	+	875.2	0.807	NA	NA	67	YJL083W_mRNA	YJL083W	YJL083W_mRNA			YJL083W			
-chrXV-21	chrXV	109751	109955	+	871.7	0.638	NA	NA	-444	YOL109W_mRNA	YOL109W	YOL109W_mRNA			YOL109W			
-chrVI-9	chrVI	142307	142511	+	871.7	0.842	NA	NA	4205	YFL002W-B	YFL002W-B	YFL002W-B			YFL002W-B			NA
-chrVII-20	chrVII	812083	812287	+	868.3	0.779	NA	NA	447	YGR161W-B	YGR161W-B	YGR161W-B			YGR161W-B			NA
-chrIV-21	chrIV	551033	551237	+	864.8	0.736	NA	NA	-559	YDR046C_mRNA	YDR046C	YDR046C_mRNA			YDR046C			
-chrXV-17	chrXV	882372	882576	+	857.9	0.717	NA	NA	-291	YOR302W_mRNA	YOR302W	YOR302W_mRNA			YOR302W			
-chrIII-9	chrIII	85589	85793	+	854.5	0.720	NA	NA	589	YCL020W	YCL020W	YCL020W			YCL020W			NA
-chrIV-20	chrIV	368647	368851	+	833.8	0.702	NA	NA	-538	YDL048C_mRNA	YDL048C	YDL048C_mRNA			YDL048C			
-chrII-15	chrII	33883	34087	+	826.9	0.799	NA	NA	-2413	tF(GAA)B_tRNA	tF(GAA)B	tF(GAA)B_tRNA			tF(GAA)B			
-chrXI-9	chrXI	615038	615242	+	823.5	0.787	NA	NA	-590	YKR093W_mRNA	YKR093W	YKR093W_mRNA			YKR093W			
-chrXII-38	chrXII	941856	942060	+	768.3	0.766	NA	NA	475	YLR410W-B	YLR410W-B	YLR410W-B			YLR410W-B			NA
-chrXI-10	chrXI	68038	68242	+	744.2	0.722	NA	NA	-674	YKL201C_mRNA	YKL201C	YKL201C_mRNA			YKL201C			
-chrX-10	chrX	639423	639627	+	720.1	0.747	NA	NA	-417	YJR115W_mRNA	YJR115W	YJR115W_mRNA			YJR115W			
-chrV-18	chrV	140812	141016	+	654.6	0.677	NA	NA	-96	YEL008C-A_mRNA	YEL008C-A	YEL008C-A_mRNA			YEL008C-A			
-chrXIII-21	chrXIII	915208	915412	+	627.1	0.568	NA	NA	-772	YMR319C_mRNA	YMR319C	YMR319C_mRNA			YMR319C			

scripts/data/reprocessed_mahendrawada_results/peaks/ACA1xstandard/C/ACA1xstandard_C_peaks.bed

@@ -1,192 +0,0 @@
-# HOMER Peaks
-# Peak finding parameters:
-# tag directory = results/tag_dirs/ACA1xstandard/C
-#
-# total peaks = 155
-# peak size = 204
-# peaks found using tags on both strands
-# minimum distance between peaks = 408
-# fragment length = 184
-# genome size = 12156812
-# Total tags = 1451171.0
-# Total tags in peaks = 45785.0
-# Approximate IP efficiency = 3.16%
-# tags per bp = 0.104271
-# expected tags per peak = 21.271
-# maximum tags considered per bp = 11.0
-# effective number of tags used for normalization = 10000000.0
-# Peaks have been centered at maximum tag pile-up
-# FDR rate threshold = 0.001000000
-# FDR effective poisson threshold = 4.991944e-06
-# FDR tag threshold = 45.0
-# number of putative peaks = 944
-#
-# input tag directory = checseq_promoter_enrichment_slurm_pipeline/control_data/from_correspondance/tag_dir
-# Fold over input required = 10.00
-# Poisson p-value over input required = 1.00e-04
-# Putative peaks filtered by input = 781
-#
-# size of region used for local filtering = 10000
-# Fold over local region required = 6.00
-# Poisson p-value over local region required = 1.00e-04
-# Putative peaks filtered by local signal = 8
-#
-# cmd = findPeaks results/tag_dirs/ACA1xstandard/C -style factor -i checseq_promoter_enrichment_slurm_pipeline/control_data/from_correspondance/tag_dir -o auto -C 0 -L 6 -F 10
-#
-# Column Headers:
-#PeakID	chr	start	end	strand	Normalized Tag Count	focus ratio	findPeaks Score	Total Tags	Control Tags (normalized to IP Experiment)	Fold Change vs Control	p-value vs Control	Fold Change vs Local	p-value vs Local
-chrXV	908651	908856	chrXV-1	8162	+
-chrXVI	38636	38841	chrXVI-1	8118	+
-chrVII	208460	208665	chrVII-1	7404	+
-chrIII	1162	1367	chrIII-2	6385	+
-chrXIII	540456	540661	chrXIII-1	6343	+
-chrIII	315494	315699	chrIII-1	6095	+
-chrXIV	559564	559769	chrXIV-1	5878	+
-chrXV	923	1128	chrXV-2	5878	+
-chrVII	780576	780781	chrVII-2	5740	+
-chrXIII	306338	306543	chrXIII-2	5737	+
-chrIV	917013	917218	chrIV-1	5375	+
-chrXVI	679014	679219	chrXVI-2	5313	+
-chrIII	154884	155089	chrIII-3	5096	+
-chrXVI	739729	739934	chrXVI-5	4527	+
-chrX	703595	703800	chrX-1	4424	+
-chrV	569315	569520	chrV-1	4148	+
-chrXVI	431866	432071	chrXVI-3	3918	+
-chrXI	230883	231088	chrXI-1	3749	+
-chrII	731382	731587	chrII-1	3690	+
-chrXII	796837	797042	chrXII-17	3559	+
-chrVII	483376	483581	chrVII-4	3425	+
-chrXVI	189038	189243	chrXVI-6	3304	+
-chrXVI	296910	297115	chrXVI-4	2960	+
-chrII	195899	196104	chrII-4	2818	+
-chrVII	483732	483937	chrVII-3	2663	+
-chrVI	23117	23322	chrVI-1	2650	+
-chrXVI	503087	503292	chrXVI-7	2643	+
-chrVII	869	1074	chrVII-6	2570	+
-chrII	371489	371694	chrII-3	2488	+
-chrXI	356081	356286	chrXI-2	2464	+
-chrXV	383113	383318	chrXV-3	2439	+
-chrVII	20320	20525	chrVII-5	2391	+
-chrXIII	608097	608302	chrXIII-5	2391	+
-chrIV	976502	976707	chrIV-2	2364	+
-chrIX	386688	386893	chrIX-1	2343	+
-chrXIV	7482	7687	chrXIV-6	2302	+
-chrXII	710847	711052	chrXII-21	2284	+
-chrIX	22156	22361	chrIX-2	2267	+
-chrXV	1083633	1083838	chrXV-8	2257	+
-chrIV	1095078	1095283	chrIV-7	2212	+
-chrII	419703	419908	chrII-2	2205	+
-chrVIII	5574	5779	chrVIII-3	2191	+
-chrIV	722608	722813	chrIV-3	2167	+
-chrXIII	433173	433378	chrXIII-3	2167	+
-chrIV	1062968	1063173	chrIV-13	2160	+
-chrVI	261322	261527	chrVI-2	2109	+
-chrII	140598	140803	chrII-5	2071	+
-chrXVI	7289	7494	chrXVI-9	2064	+
-chrVI	31145	31350	chrVI-3	2060	+
-chrVII	987358	987563	chrVII-7	2023	+
-chrXV	27936	28141	chrXV-4	2019	+
-chrVII	592361	592566	chrVII-8	1995	+
-chrX	21442	21647	chrX-2	1992	+
-chrXV	987911	988116	chrXV-5	1992	+
-chrXI	862	1067	chrXI-4	1950	+
-chrII	6681	6886	chrII-7	1899	+
-chrXIII	271784	271989	chrXIII-4	1885	+
-chrXIV	302101	302306	chrXIV-2	1885	+
-chrVIII	205930	206135	chrVIII-5	1871	+
-chrIV	538980	539185	chrIV-4	1847	+
-chrXIII	557060	557265	chrXIII-6	1836	+
-chrXV	974536	974741	chrXV-19	1774	+
-chrVII	621674	621879	chrVII-10	1768	+
-chrXV	989342	989547	chrXV-6	1768	+
-chrXII	368415	368620	chrXII-19	1716	+
-chrXI	2663	2868	chrXI-3	1702	+
-chrXII	1063999	1064204	chrXII-23	1699	+
-chrVIII	16821	17026	chrVIII-2	1695	+
-chrXIV	739317	739522	chrXIV-3	1688	+
-chrIX	433067	433272	chrIX-4	1671	+
-chrIV	1468809	1469014	chrIV-5	1647	+
-chrXV	979092	979297	chrXV-7	1647	+
-chrX	173207	173412	chrX-3	1623	+
-chrII	476859	477064	chrII-6	1554	+
-chrXII	1071649	1071854	chrXII-20	1509	+
-chrIV	600069	600274	chrIV-6	1502	+
-chrIX	138347	138552	chrIX-6	1502	+
-chrXVI	645293	645498	chrXVI-8	1492	+
-chrV	85160	85365	chrV-2	1454	+
-chrXIII	798072	798277	chrXIII-7	1430	+
-chrXIII	510823	511028	chrXIII-9	1426	+
-chrI	29564	29769	chrI-1	1385	+
-chrVII	609920	610125	chrVII-12	1385	+
-chrIV	1224325	1224530	chrIV-16	1371	+
-chrIX	438791	438996	chrIX-3	1371	+
-chrXIV	76995	77200	chrXIV-10	1371	+
-chrV	159242	159447	chrV-4	1364	+
-chrVII	23385	23590	chrVII-11	1364	+
-chrIV	1314978	1315183	chrIV-9	1361	+
-chrIV	386868	387073	chrIV-8	1337	+
-chrXIV	771801	772006	chrXIV-7	1323	+
-chrIV	132911	133116	chrIV-11	1316	+
-chrXI	514303	514508	chrXI-5	1313	+
-chrI	68392	68597	chrI-2	1292	+
-chrVIII	172784	172989	chrVIII-6	1285	+
-chrIV	1459984	1460189	chrIV-14	1271	+
-chrV	259971	260176	chrV-3	1271	+
-chrXII	977101	977306	chrXII-27	1271	+
-chrXV	1058793	1058998	chrXV-9	1258	+
-chrXVI	828965	829170	chrXVI-11	1251	+
-chrXV	494307	494512	chrXV-10	1240	+
-chrVII	1083358	1083563	chrVII-14	1237	+
-chrXI	329617	329822	chrXI-8	1223	+
-chrXVI	502571	502776	chrXVI-10	1213	+
-chrXVI	554154	554359	chrXVI-13	1209	+
-chrXI	518475	518680	chrXI-6	1189	+
-chrXV	795359	795564	chrXV-14	1189	+
-chrXIII	10069	10274	chrXIII-8	1185	+
-chrVII	7292	7497	chrVII-9	1182	+
-chrXIII	263070	263275	chrXIII-14	1168	+
-chrXIV	662313	662518	chrXIV-5	1168	+
-chrV	284614	284819	chrV-5	1158	+
-chrV	126161	126366	chrV-6	1154	+
-chrXII	757223	757428	chrXII-37	1154	+
-chrX	294572	294777	chrX-6	1151	+
-chrXII	950703	950908	chrXII-26	1082	+
-chrVIII	48254	48459	chrVIII-7	1075	+
-chrXIV	652090	652295	chrXIV-9	1072	+
-chrII	691956	692161	chrII-9	1061	+
-chrXIII	653494	653699	chrXIII-12	1061	+
-chrXVI	214771	214976	chrXVI-14	1054	+
-chrXV	638827	639032	chrXV-11	1044	+
-chrXIII	472616	472821	chrXIII-13	1041	+
-chrIX	254542	254747	chrIX-8	1037	+
-chrXIV	440952	441157	chrXIV-8	1023	+
-chrXV	521022	521227	chrXV-12	1020	+
-chrXI	99722	99927	chrXI-7	1016	+
-chrXVI	585889	586094	chrXVI-15	999	+
-chrV	42434	42639	chrV-7	992	+
-chrXIV	781222	781427	chrXIV-19	992	+
-chrIV	1345343	1345548	chrIV-23	979	+
-chrVII	384852	385057	chrVII-15	979	+
-chrVIII	255272	255477	chrVIII-9	972	+
-chrXIV	605441	605646	chrXIV-14	965	+
-chrXVI	404105	404310	chrXVI-20	961	+
-chrI	190156	190361	chrI-3	958	+
-chrII	555471	555676	chrII-8	941	+
-chrXII	371050	371255	chrXII-30	923	+
-chrXII	660168	660373	chrXII-31	903	+
-chrXIII	287480	287685	chrXIII-16	882	+
-chrX	278805	279010	chrX-7	875	+
-chrVI	142306	142511	chrVI-9	872	+
-chrXV	109750	109955	chrXV-21	872	+
-chrVII	812082	812287	chrVII-20	868	+
-chrIV	551032	551237	chrIV-21	865	+
-chrXV	882371	882576	chrXV-17	858	+
-chrIII	85588	85793	chrIII-9	855	+
-chrIV	368646	368851	chrIV-20	834	+
-chrII	33882	34087	chrII-15	827	+
-chrXI	615037	615242	chrXI-9	824	+
-chrXII	941855	942060	chrXII-38	768	+
-chrXI	68037	68242	chrXI-10	744	+
-chrX	639422	639627	chrX-10	720	+
-chrV	140811	141016	chrV-18	655	+
-chrXIII	915207	915412	chrXIII-21	627	+

scripts/data/reprocessed_mahendrawada_results/peaks/ACA1xstandard/C/ACA1xstandard_C_peaks.txt

@@ -1,192 +0,0 @@
-# HOMER Peaks
-# Peak finding parameters:
-# tag directory = results/tag_dirs/ACA1xstandard/C
-#
-# total peaks = 155
-# peak size = 204
-# peaks found using tags on both strands
-# minimum distance between peaks = 408
-# fragment length = 184
-# genome size = 12156812
-# Total tags = 1451171.0
-# Total tags in peaks = 45785.0
-# Approximate IP efficiency = 3.16%
-# tags per bp = 0.104271
-# expected tags per peak = 21.271
-# maximum tags considered per bp = 11.0
-# effective number of tags used for normalization = 10000000.0
-# Peaks have been centered at maximum tag pile-up
-# FDR rate threshold = 0.001000000
-# FDR effective poisson threshold = 4.991944e-06
-# FDR tag threshold = 45.0
-# number of putative peaks = 944
-#
-# input tag directory = checseq_promoter_enrichment_slurm_pipeline/control_data/from_correspondance/tag_dir
-# Fold over input required = 10.00
-# Poisson p-value over input required = 1.00e-04
-# Putative peaks filtered by input = 781
-#
-# size of region used for local filtering = 10000
-# Fold over local region required = 6.00
-# Poisson p-value over local region required = 1.00e-04
-# Putative peaks filtered by local signal = 8
-#
-# cmd = findPeaks results/tag_dirs/ACA1xstandard/C -style factor -i checseq_promoter_enrichment_slurm_pipeline/control_data/from_correspondance/tag_dir -o auto -C 0 -L 6 -F 10
-#
-# Column Headers:
-#PeakID	chr	start	end	strand	Normalized Tag Count	focus ratio	findPeaks Score	Total Tags	Control Tags (normalized to IP Experiment)	Fold Change vs Control	p-value vs Control	Fold Change vs Local	p-value vs Local
-chrXV-1	chrXV	908652	908856	+	8162.4	0.742	612.000000	1184.5	16.5	71.79	0.00e+00	27.10	0.00e+00
-chrXVI-1	chrXVI	38637	38841	+	8117.6	0.839	461.500000	1178.0	12.0	98.45	0.00e+00	42.81	0.00e+00
-chrVII-1	chrVII	208461	208665	+	7404.4	0.908	480.000000	1074.5	12.3	87.62	0.00e+00	56.70	0.00e+00
-chrIII-2	chrIII	1163	1367	+	6384.5	0.847	445.000000	926.5	22.3	41.56	0.00e+00	56.00	0.00e+00
-chrXIII-1	chrXIII	540457	540661	+	6343.2	0.716	687.500000	920.5	10.2	90.41	0.00e+00	29.05	0.00e+00
-chrIII-1	chrIII	315495	315699	+	6095.1	0.796	576.500000	884.5	12.5	70.84	0.00e+00	51.02	0.00e+00
-chrXIV-1	chrXIV	559565	559769	+	5878.0	0.855	502.500000	853.0	12.5	68.32	0.00e+00	26.02	0.00e+00
-chrXV-2	chrXV	924	1128	+	5878.0	0.809	425.500000	853.0	14.1	60.41	0.00e+00	64.15	0.00e+00
-chrVII-2	chrVII	780577	780781	+	5740.2	0.767	400.500000	833.0	10.5	79.49	0.00e+00	31.12	0.00e+00
-chrXIII-2	chrXIII	306339	306543	+	5736.7	0.825	516.000000	832.5	10.5	79.44	0.00e+00	21.98	0.00e+00
-chrIV-1	chrIV	917014	917218	+	5375.0	0.804	463.000000	780.0	8.8	88.94	0.00e+00	41.52	0.00e+00
-chrXVI-2	chrXVI	679015	679219	+	5313.0	0.810	381.000000	771.0	14.1	54.60	0.00e+00	44.55	0.00e+00
-chrIII-3	chrIII	154885	155089	+	5095.9	0.869	290.500000	739.5	24.4	30.34	0.00e+00	48.45	0.00e+00
-chrXVI-5	chrXVI	739730	739934	+	4527.4	0.888	324.000000	657.0	20.9	31.46	0.00e+00	65.73	0.00e+00
-chrX-1	chrX	703596	703800	+	4424.0	0.838	433.500000	642.0	11.7	54.67	0.00e+00	41.44	0.00e+00
-chrV-1	chrV	569316	569520	+	4148.4	0.821	364.000000	602.0	12.5	48.22	0.00e+00	28.19	0.00e+00
-chrXVI-3	chrXVI	431867	432071	+	3917.5	0.829	366.000000	568.5	11.6	49.03	0.00e+00	36.13	0.00e+00
-chrXI-1	chrXI	230884	231088	+	3748.7	0.737	430.500000	544.0	9.4	58.09	0.00e+00	19.60	0.00e+00
-chrII-1	chrII	731383	731587	+	3690.1	0.782	346.500000	535.5	9.0	59.55	0.00e+00	35.62	0.00e+00
-chrXII-17	chrXII	796838	797042	+	3559.2	0.829	337.000000	516.5	13.7	37.57	0.00e+00	42.80	0.00e+00
-chrVII-4	chrVII	483377	483581	+	3424.8	0.651	366.000000	497.0	12.9	38.43	0.00e+00	13.25	0.00e+00
-chrXVI-6	chrXVI	189039	189243	+	3304.2	0.803	322.000000	479.5	12.0	39.83	0.00e+00	23.81	0.00e+00
-chrXVI-4	chrXVI	296911	297115	+	2959.7	0.841	329.000000	429.5	9.4	45.51	0.00e+00	40.44	0.00e+00
-chrII-4	chrII	195900	196104	+	2818.4	0.779	285.500000	409.0	13.1	31.27	0.00e+00	26.22	0.00e+00
-chrVII-3	chrVII	483733	483937	+	2663.4	0.548	394.500000	386.5	20.7	18.64	0.00e+00	9.73	3.88e-233
-chrVI-1	chrVI	23118	23322	+	2649.6	0.756	281.500000	384.5	19.8	19.38	0.00e+00	23.24	0.00e+00
-chrXVI-7	chrXVI	503088	503292	+	2642.7	0.681	229.000000	383.5	13.2	29.15	0.00e+00	23.31	0.00e+00
-chrVII-6	chrVII	870	1074	+	2570.3	0.749	318.500000	373.0	14.3	26.14	0.00e+00	36.67	0.00e+00
-chrII-3	chrII	371490	371694	+	2487.6	0.754	290.500000	361.0	11.7	30.94	0.00e+00	13.78	3.09e-268
-chrXI-2	chrXI	356082	356286	+	2463.5	0.558	342.000000	357.5	14.7	24.29	0.00e+00	10.26	2.87e-223
-chrXV-3	chrXV	383114	383318	+	2439.4	0.868	311.000000	354.0	17.0	20.80	1.28e-322	23.43	0.00e+00
-chrVII-5	chrVII	20321	20525	+	2391.2	0.730	347.500000	347.0	13.2	26.38	0.00e+00	13.51	3.39e-255
-chrXIII-5	chrXIII	608098	608302	+	2391.2	0.819	245.000000	347.0	8.2	42.06	0.00e+00	34.04	0.00e+00
-chrIV-2	chrIV	976503	976707	+	2363.6	0.776	318.000000	343.0	12.1	28.31	0.00e+00	23.23	0.00e+00
-chrIX-1	chrIX	386689	386893	+	2342.9	0.758	310.500000	340.0	16.5	20.61	1.21e-308	11.15	4.94e-224
-chrXIV-6	chrXIV	7483	7687	+	2301.6	0.814	181.000000	334.0	12.0	27.74	0.00e+00	22.35	1.75e-314
-chrXII-21	chrXII	710848	711052	+	2284.4	0.896	195.500000	331.5	14.2	23.35	1.74e-317	36.55	0.00e+00
-chrIX-2	chrIX	22157	22361	+	2267.1	0.745	305.000000	329.0	9.0	36.59	0.00e+00	20.02	8.05e-295
-chrXV-8	chrXV	1083634	1083838	+	2256.8	0.806	200.000000	327.5	8.5	38.32	0.00e+00	15.66	6.20e-260
-chrIV-7	chrIV	1095079	1095283	+	2212.0	0.882	194.000000	321.0	13.5	23.86	4.81e-311	30.83	0.00e+00
-chrII-2	chrII	419704	419908	+	2205.1	0.659	307.000000	320.0	14.3	22.31	3.94e-301	19.61	4.46e-284
-chrVIII-3	chrVIII	5575	5779	+	2191.3	0.669	211.500000	318.0	13.7	23.13	5.03e-304	17.45	4.60e-267
-chrIV-3	chrIV	722609	722813	+	2167.2	0.792	299.500000	314.5	14.0	22.39	8.69e-296	22.93	6.45e-299
-chrXIII-3	chrXIII	433174	433378	+	2167.2	0.657	290.000000	314.5	12.9	24.46	2.46e-307	15.01	2.93e-244
-chrIV-13	chrIV	1062969	1063173	+	2160.3	0.828	177.000000	313.5	20.2	15.51	1.28e-247	43.26	0.00e+00
-chrVI-2	chrVI	261323	261527	+	2108.6	0.909	221.000000	306.0	11.0	27.82	3.29e-316	28.73	2.53e-320
-chrII-5	chrII	140599	140803	+	2070.7	0.801	259.500000	300.5	9.6	31.34	0.00e+00	24.03	1.70e-291
-chrXVI-9	chrXVI	7290	7494	+	2063.9	0.816	199.000000	299.5	11.1	27.05	2.75e-305	15.87	2.14e-239
-chrVI-3	chrVI	31146	31350	+	2060.4	0.763	217.500000	299.0	11.4	26.12	3.67e-301	17.28	5.22e-250
-chrVII-7	chrVII	987359	987563	+	2022.5	0.705	265.000000	293.5	11.4	25.81	1.77e-293	15.20	1.47e-229
-chrXV-4	chrXV	27937	28141	+	2019.1	0.722	297.500000	293.0	13.7	21.31	2.44e-270	16.81	9.61e-242
-chrVII-8	chrVII	592362	592566	+	1994.9	0.696	263.000000	289.5	12.0	24.19	1.06e-281	11.02	3.85e-189
-chrX-2	chrX	21443	21647	+	1991.5	0.699	242.000000	289.0	17.8	16.27	1.26e-234	20.11	9.14e-260
-chrXV-5	chrXV	987912	988116	+	1991.5	0.688	246.500000	289.0	10.9	26.63	1.71e-293	10.04	8.04e-179
-chrXI-4	chrXI	863	1067	+	1950.1	0.788	187.000000	283.0	15.1	18.76	2.75e-246	16.37	1.60e-230
-chrII-7	chrII	6682	6886	+	1898.5	0.686	191.000000	275.5	11.8	23.31	6.60e-264	13.85	3.17e-205
-chrXIII-4	chrXIII	271785	271989	+	1884.7	0.947	254.500000	273.5	16.6	16.50	3.98e-223	31.34	8.60e-296
-chrXIV-2	chrXIV	302102	302306	+	1884.7	0.709	256.000000	273.5	10.9	25.21	7.19e-271	13.27	4.77e-199
-chrVIII-5	chrVIII	205931	206135	+	1870.9	0.855	203.500000	271.5	11.8	22.98	1.89e-258	21.46	8.84e-251
-chrIV-4	chrIV	538981	539185	+	1846.8	0.679	208.000000	268.0	12.0	22.26	2.71e-252	12.97	3.98e-193
-chrXIII-6	chrXIII	557061	557265	+	1836.4	0.790	243.500000	266.5	13.2	20.26	7.49e-240	22.65	3.88e-252
-chrXV-19	chrXV	974537	974741	+	1774.4	0.862	134.500000	257.5	15.6	16.50	3.88e-210	9.88	2.18e-157
-chrVII-10	chrVII	621675	621879	+	1767.5	0.743	194.000000	256.5	12.7	20.18	1.65e-230	21.63	7.94e-238
-chrXV-6	chrXV	989343	989547	+	1767.5	0.810	214.500000	256.5	11.1	23.01	2.12e-244	8.60	4.80e-143
-chrXII-19	chrXII	368416	368620	+	1715.9	0.890	204.000000	249.0	12.9	19.26	1.25e-219	13.13	8.52e-181
-chrXI-3	chrXI	2664	2868	+	1702.1	0.764	192.500000	247.0	14.3	17.31	4.41e-207	12.69	4.85e-176
-chrXII-23	chrXII	1064000	1064204	+	1698.6	0.778	176.500000	246.5	14.7	16.75	9.50e-203	15.65	6.55e-196
-chrVIII-2	chrVIII	16822	17026	+	1695.2	0.650	226.000000	246.0	15.2	16.23	9.43e-200	7.12	3.62e-120
-chrXIV-3	chrXIV	739318	739522	+	1688.3	0.768	223.000000	245.0	13.2	18.62	8.84e-213	22.73	5.78e-233
-chrIX-4	chrIX	433068	433272	+	1671.1	0.662	185.000000	242.5	16.4	14.83	1.69e-187	15.00	1.39e-188
-chrIV-5	chrIV	1468810	1469014	+	1646.9	0.843	207.000000	239.0	10.5	22.81	1.25e-227	25.59	4.41e-239
-chrXV-7	chrXV	979093	979297	+	1646.9	0.640	214.000000	239.0	18.4	12.97	1.85e-172	9.03	2.28e-138
-chrX-3	chrX	173208	173412	+	1622.8	0.813	196.500000	235.5	10.9	21.56	3.78e-218	22.35	1.15e-221
-chrII-6	chrII	476860	477064	+	1553.9	0.852	228.500000	225.5	15.1	14.95	3.65e-175	39.02	6.55e-265
-chrXII-20	chrXII	1071650	1071854	+	1509.1	0.839	203.500000	219.0	21.3	10.27	6.48e-138	18.71	7.70e-191
-chrIV-6	chrIV	600070	600274	+	1502.2	0.645	202.500000	218.0	12.3	17.78	2.16e-185	19.96	9.08e-196
-chrIX-6	chrIX	138348	138552	+	1502.2	0.714	162.500000	218.0	13.2	16.57	3.95e-179	10.13	3.56e-136
-chrXVI-8	chrXVI	645294	645498	+	1491.9	0.749	207.500000	216.5	11.4	18.92	5.18e-189	9.77	1.25e-131
-chrV-2	chrV	85161	85365	+	1454.0	0.648	240.000000	211.0	10.7	19.72	1.75e-188	9.81	3.56e-129
-chrXIII-7	chrXIII	798073	798277	+	1429.9	0.850	211.000000	207.5	10.5	19.80	4.11e-185	17.99	6.35e-177
-chrXIII-9	chrXIII	510824	511028	+	1426.4	0.778	189.000000	207.0	11.4	18.09	1.33e-177	21.38	7.25e-192
-chrI-1	chrI	29565	29769	+	1385.1	0.707	185.500000	201.0	15.5	13.00	1.39e-145	9.70	3.05e-122
-chrVII-12	chrVII	609921	610125	+	1385.1	0.736	181.500000	201.0	13.2	15.28	1.12e-158	17.38	3.30e-169
-chrIV-16	chrIV	1224326	1224530	+	1371.3	0.733	137.000000	199.0	13.4	14.88	5.92e-155	32.17	1.61e-218
-chrIX-3	chrIX	438792	438996	+	1371.3	0.729	189.500000	199.0	13.5	14.79	1.66e-154	19.21	9.71e-176
-chrXIV-10	chrXIV	76996	77200	+	1371.3	0.760	146.000000	199.0	14.6	13.66	4.16e-148	22.12	2.38e-187
-chrV-4	chrV	159243	159447	+	1364.4	0.847	166.000000	198.0	19.3	10.25	9.95e-125	19.23	5.99e-175
-chrVII-11	chrVII	23386	23590	+	1364.4	0.866	192.000000	198.0	11.8	16.76	8.95e-164	7.15	2.06e-97
-chrIV-9	chrIV	1314979	1315183	+	1361.0	0.776	188.000000	197.5	14.5	13.63	3.04e-146	32.53	4.69e-217
-chrIV-8	chrIV	386869	387073	+	1336.9	0.754	191.000000	194.0	12.8	15.18	1.10e-152	19.19	2.72e-171
-chrXIV-7	chrXIV	771802	772006	+	1323.1	0.648	174.500000	192.0	13.4	14.35	8.60e-147	14.96	5.48e-150
-chrIV-11	chrIV	132912	133116	+	1316.2	0.797	185.500000	191.0	15.1	12.66	2.13e-136	17.02	2.93e-159
-chrXI-5	chrXI	514304	514508	+	1312.7	0.800	170.500000	190.5	11.7	16.22	1.57e-154	7.78	2.38e-99
-chrI-2	chrI	68393	68597	+	1292.1	0.721	177.500000	187.5	10.4	18.02	3.72e-160	10.67	1.02e-120
-chrVIII-6	chrVIII	172785	172989	+	1285.2	0.836	165.000000	186.5	16.4	11.35	1.27e-124	16.02	2.30e-150
-chrIV-14	chrIV	1459985	1460189	+	1271.4	0.651	156.500000	184.5	14.9	12.41	8.04e-130	18.85	5.13e-161
-chrV-3	chrV	259972	260176	+	1271.4	0.851	171.000000	184.5	13.6	13.57	2.25e-136	15.16	1.27e-144
-chrXII-27	chrXII	977102	977306	+	1271.4	0.822	152.500000	184.5	12.8	14.43	5.64e-141	17.01	3.04e-153
-chrXV-9	chrXV	1058794	1058998	+	1257.6	0.673	187.000000	182.5	13.5	13.57	6.43e-135	10.23	1.81e-114
-chrXVI-11	chrXVI	828966	829170	+	1250.7	0.702	175.000000	181.5	14.5	12.52	2.22e-128	10.32	1.67e-114
-chrXV-10	chrXV	494308	494512	+	1240.4	0.807	174.000000	180.0	13.4	13.46	4.65e-133	20.29	3.19e-163
-chrVII-14	chrVII	1083359	1083563	+	1236.9	0.609	159.000000	179.5	16.4	10.93	2.72e-117	9.15	7.96e-105
-chrXI-8	chrXI	329618	329822	+	1223.2	0.856	140.500000	177.5	15.9	11.16	1.81e-117	19.28	1.29e-156
-chrXVI-10	chrXVI	502572	502776	+	1212.8	0.655	178.000000	176.0	9.5	18.50	6.01e-153	8.40	1.66e-97
-chrXVI-13	chrXVI	554155	554359	+	1209.4	0.805	159.000000	175.5	16.1	10.93	9.79e-115	18.96	1.21e-153
-chrXI-6	chrXI	518476	518680	+	1188.7	0.632	164.000000	172.5	8.9	19.34	1.86e-152	7.13	1.62e-84
-chrXV-14	chrXV	795360	795564	+	1188.7	0.869	148.500000	172.5	15.0	11.49	3.47e-116	22.30	1.44e-162
-chrXIII-8	chrXIII	10070	10274	+	1185.2	0.820	191.000000	172.0	12.6	13.61	4.82e-128	10.27	9.67e-109
-chrVII-9	chrVII	7293	7497	+	1181.8	0.771	205.000000	171.5	14.3	12.02	1.41e-118	11.25	4.32e-114
-chrXIII-14	chrXIII	263071	263275	+	1168.0	0.812	134.500000	169.5	14.7	11.52	2.35e-114	13.35	2.46e-124
-chrXIV-5	chrXIV	662314	662518	+	1168.0	0.841	199.000000	169.5	9.4	17.96	1.13e-144	9.81	1.19e-103
-chrV-5	chrV	284615	284819	+	1157.7	0.761	165.500000	168.0	10.0	16.74	3.22e-139	9.99	1.83e-104
-chrV-6	chrV	126162	126366	+	1154.2	0.870	144.000000	167.5	15.7	10.68	4.83e-108	14.66	3.45e-129
-chrXII-37	chrXII	757224	757428	+	1154.2	0.904	102.500000	167.5	15.2	10.99	6.08e-110	32.24	1.24e-183
-chrX-6	chrX	294573	294777	+	1150.8	0.686	148.000000	167.0	16.4	10.21	2.66e-105	11.85	3.98e-115
-chrXII-26	chrXII	950704	950908	+	1081.9	0.758	156.500000	157.0	9.2	17.04	2.42e-131	7.97	4.97e-84
-chrVIII-7	chrVIII	48255	48459	+	1075.0	0.830	156.000000	156.0	14.6	10.71	2.12e-101	14.55	1.74e-120
-chrXIV-9	chrXIV	652091	652295	+	1071.5	0.788	154.500000	155.5	11.2	13.86	1.74e-116	16.29	1.23e-126
-chrII-9	chrII	691957	692161	+	1061.2	0.714	142.500000	154.0	9.1	16.98	1.12e-128	16.01	5.97e-125
-chrXIII-12	chrXIII	653495	653699	+	1061.2	0.683	156.500000	154.0	14.4	10.68	5.78e-100	11.82	3.73e-106
-chrXVI-14	chrXVI	214772	214976	+	1054.3	0.685	154.500000	153.0	12.1	12.63	1.64e-109	11.05	2.28e-101
-chrXV-11	chrXV	638828	639032	+	1044.0	0.743	153.500000	151.5	13.7	11.02	1.03e-99	16.18	4.95e-123
-chrXIII-13	chrXIII	472617	472821	+	1040.5	0.689	151.500000	151.0	14.6	10.37	2.81e-96	12.71	1.74e-108
-chrIX-8	chrIX	254543	254747	+	1037.1	0.766	142.500000	150.5	12.7	11.84	2.38e-103	12.17	5.80e-105
-chrXIV-8	chrXIV	440953	441157	+	1023.3	0.822	162.000000	148.5	12.0	12.33	2.14e-104	16.43	1.56e-121
-chrXV-12	chrXV	521023	521227	+	1019.9	0.622	151.500000	148.0	9.1	16.19	7.56e-121	11.87	2.36e-102
-chrXI-7	chrXI	99723	99927	+	1016.4	0.650	150.500000	147.5	10.3	14.28	2.41e-112	11.89	1.43e-101
-chrXVI-15	chrXVI	585890	586094	+	999.2	0.759	145.000000	145.0	14.3	10.11	4.22e-91	10.51	2.58e-93
-chrV-7	chrV	42435	42639	+	992.3	0.802	143.000000	144.0	13.5	10.70	1.00e-93	9.57	2.08e-87
-chrXIV-19	chrXIV	781223	781427	+	992.3	0.854	105.500000	144.0	11.8	12.19	3.98e-101	9.22	2.55e-85
-chrIV-23	chrIV	1345344	1345548	+	978.5	0.757	114.500000	142.0	10.2	13.95	1.95e-107	21.14	1.33e-131
-chrVII-15	chrVII	384853	385057	+	978.5	0.674	133.500000	142.0	7.4	19.11	1.15e-125	15.02	1.08e-111
-chrVIII-9	chrVIII	255273	255477	+	971.6	0.798	135.000000	141.0	13.8	10.20	3.88e-89	16.18	3.49e-115
-chrXIV-14	chrXIV	605442	605646	+	964.7	0.677	121.000000	140.0	12.7	11.02	9.25e-93	12.60	3.03e-100
-chrXVI-20	chrXVI	404106	404310	+	961.3	0.733	127.000000	139.5	10.1	13.80	2.02e-104	12.85	2.07e-100
-chrI-3	chrI	190157	190361	+	957.8	0.772	123.500000	139.0	11.7	11.84	4.48e-96	9.54	2.80e-84
-chrII-8	chrII	555472	555676	+	940.6	0.638	150.000000	136.5	9.9	13.81	3.09e-102	8.63	5.01e-77
-chrXII-30	chrXII	371051	371255	+	923.4	0.608	134.000000	134.0	11.7	11.48	4.47e-91	6.18	2.32e-59
-chrXII-31	chrXII	660169	660373	+	902.7	0.829	131.500000	131.0	11.1	11.83	1.27e-90	12.64	4.19e-94
-chrXIII-16	chrXIII	287481	287685	+	882.0	0.677	132.500000	128.0	12.6	10.19	4.72e-81	8.01	3.69e-69
-chrX-7	chrX	278806	279010	+	875.2	0.807	130.500000	127.0	10.9	11.70	2.24e-87	15.90	4.77e-103
-chrVI-9	chrVI	142307	142511	+	871.7	0.842	94.500000	126.5	11.6	10.91	5.29e-83	8.15	1.02e-68
-chrXV-21	chrXV	109751	109955	+	871.7	0.638	124.000000	126.5	11.8	10.71	4.68e-82	9.07	6.40e-74
-chrVII-20	chrVII	812083	812287	+	868.3	0.779	105.500000	126.0	12.6	10.03	4.87e-79	7.06	4.33e-62
-chrIV-21	chrIV	551033	551237	+	864.8	0.736	119.500000	125.5	11.4	11.04	6.34e-83	14.86	8.12e-98
-chrXV-17	chrXV	882372	882576	+	857.9	0.717	138.000000	124.5	9.1	13.62	1.12e-92	11.49	3.12e-84
-chrIII-9	chrIII	85589	85793	+	854.5	0.720	104.500000	124.0	8.6	14.38	1.31e-95	9.80	1.09e-76
-chrIV-20	chrIV	368647	368851	+	833.8	0.702	121.000000	121.0	11.0	11.00	2.29e-80	11.06	1.31e-80
-chrII-15	chrII	33883	34087	+	826.9	0.799	90.000000	120.0	10.9	10.98	1.21e-79	10.79	8.35e-79
-chrXI-9	chrXI	615038	615242	+	823.5	0.787	120.000000	119.5	9.1	13.07	4.76e-87	11.62	1.95e-81
-chrXII-38	chrXII	941856	942060	+	768.3	0.766	102.500000	111.5	10.8	10.35	5.27e-71	9.73	2.34e-68
-chrXI-10	chrXI	68038	68242	+	744.2	0.722	115.000000	108.0	9.1	11.91	2.42e-75	7.89	5.36e-58
-chrX-10	chrX	639423	639627	+	720.1	0.747	111.500000	104.5	7.9	13.27	6.70e-77	7.74	5.28e-55
-chrV-18	chrV	140812	141016	+	654.6	0.677	97.000000	95.0	8.5	11.21	3.21e-64	8.51	5.34e-54
-chrXIII-21	chrXIII	915208	915412	+	627.1	0.568	103.500000	91.0	8.7	10.47	4.08e-59	6.30	1.66e-41

scripts/data/reprocessed_mahendrawada_results/peaks/ACA1xstandard/C/ACA1xstandard_C_peaks_summits.txt

@@ -1,155 +0,0 @@
-chrXV	908754	908755	chrXV-1	0	+
-chrXVI	38739	38740	chrXVI-1	0	+
-chrVII	208563	208564	chrVII-1	0	+
-chrIII	1265	1266	chrIII-2	0	+
-chrXIII	540559	540560	chrXIII-1	0	+
-chrIII	315597	315598	chrIII-1	0	+
-chrXIV	559667	559668	chrXIV-1	0	+
-chrXV	1026	1027	chrXV-2	0	+
-chrVII	780679	780680	chrVII-2	0	+
-chrXIII	306441	306442	chrXIII-2	0	+
-chrIV	917116	917117	chrIV-1	0	+
-chrXVI	679117	679118	chrXVI-2	0	+
-chrIII	154987	154988	chrIII-3	0	+
-chrXVI	739832	739833	chrXVI-5	0	+
-chrX	703698	703699	chrX-1	0	+
-chrV	569418	569419	chrV-1	0	+
-chrXVI	431969	431970	chrXVI-3	0	+
-chrXI	230986	230987	chrXI-1	0	+
-chrII	731485	731486	chrII-1	0	+
-chrXII	796940	796941	chrXII-17	0	+
-chrVII	483479	483480	chrVII-4	0	+
-chrXVI	189141	189142	chrXVI-6	0	+
-chrXVI	297013	297014	chrXVI-4	0	+
-chrII	196002	196003	chrII-4	0	+
-chrVII	483835	483836	chrVII-3	0	+
-chrVI	23220	23221	chrVI-1	0	+
-chrXVI	503190	503191	chrXVI-7	0	+
-chrVII	972	973	chrVII-6	0	+
-chrII	371592	371593	chrII-3	0	+
-chrXI	356184	356185	chrXI-2	0	+
-chrXV	383216	383217	chrXV-3	0	+
-chrVII	20423	20424	chrVII-5	0	+
-chrXIII	608200	608201	chrXIII-5	0	+
-chrIV	976605	976606	chrIV-2	0	+
-chrIX	386791	386792	chrIX-1	0	+
-chrXIV	7585	7586	chrXIV-6	0	+
-chrXII	710950	710951	chrXII-21	0	+
-chrIX	22259	22260	chrIX-2	0	+
-chrXV	1083736	1083737	chrXV-8	0	+
-chrIV	1095181	1095182	chrIV-7	0	+
-chrII	419806	419807	chrII-2	0	+
-chrVIII	5677	5678	chrVIII-3	0	+
-chrIV	722711	722712	chrIV-3	0	+
-chrXIII	433276	433277	chrXIII-3	0	+
-chrIV	1063071	1063072	chrIV-13	0	+
-chrVI	261425	261426	chrVI-2	0	+
-chrII	140701	140702	chrII-5	0	+
-chrXVI	7392	7393	chrXVI-9	0	+
-chrVI	31248	31249	chrVI-3	0	+
-chrVII	987461	987462	chrVII-7	0	+
-chrXV	28039	28040	chrXV-4	0	+
-chrVII	592464	592465	chrVII-8	0	+
-chrX	21545	21546	chrX-2	0	+
-chrXV	988014	988015	chrXV-5	0	+
-chrXI	965	966	chrXI-4	0	+
-chrII	6784	6785	chrII-7	0	+
-chrXIII	271887	271888	chrXIII-4	0	+
-chrXIV	302204	302205	chrXIV-2	0	+
-chrVIII	206033	206034	chrVIII-5	0	+
-chrIV	539083	539084	chrIV-4	0	+
-chrXIII	557163	557164	chrXIII-6	0	+
-chrXV	974639	974640	chrXV-19	0	+
-chrVII	621777	621778	chrVII-10	0	+
-chrXV	989445	989446	chrXV-6	0	+
-chrXII	368518	368519	chrXII-19	0	+
-chrXI	2766	2767	chrXI-3	0	+
-chrXII	1064102	1064103	chrXII-23	0	+
-chrVIII	16924	16925	chrVIII-2	0	+
-chrXIV	739420	739421	chrXIV-3	0	+
-chrIX	433170	433171	chrIX-4	0	+
-chrIV	1468912	1468913	chrIV-5	0	+
-chrXV	979195	979196	chrXV-7	0	+
-chrX	173310	173311	chrX-3	0	+
-chrII	476962	476963	chrII-6	0	+
-chrXII	1071752	1071753	chrXII-20	0	+
-chrIV	600172	600173	chrIV-6	0	+
-chrIX	138450	138451	chrIX-6	0	+
-chrXVI	645396	645397	chrXVI-8	0	+
-chrV	85263	85264	chrV-2	0	+
-chrXIII	798175	798176	chrXIII-7	0	+
-chrXIII	510926	510927	chrXIII-9	0	+
-chrI	29667	29668	chrI-1	0	+
-chrVII	610023	610024	chrVII-12	0	+
-chrIV	1224428	1224429	chrIV-16	0	+
-chrIX	438894	438895	chrIX-3	0	+
-chrXIV	77098	77099	chrXIV-10	0	+
-chrV	159345	159346	chrV-4	0	+
-chrVII	23488	23489	chrVII-11	0	+
-chrIV	1315081	1315082	chrIV-9	0	+
-chrIV	386971	386972	chrIV-8	0	+
-chrXIV	771904	771905	chrXIV-7	0	+
-chrIV	133014	133015	chrIV-11	0	+
-chrXI	514406	514407	chrXI-5	0	+
-chrI	68495	68496	chrI-2	0	+
-chrVIII	172887	172888	chrVIII-6	0	+
-chrIV	1460087	1460088	chrIV-14	0	+
-chrV	260074	260075	chrV-3	0	+
-chrXII	977204	977205	chrXII-27	0	+
-chrXV	1058896	1058897	chrXV-9	0	+
-chrXVI	829068	829069	chrXVI-11	0	+
-chrXV	494410	494411	chrXV-10	0	+
-chrVII	1083461	1083462	chrVII-14	0	+
-chrXI	329720	329721	chrXI-8	0	+
-chrXVI	502674	502675	chrXVI-10	0	+
-chrXVI	554257	554258	chrXVI-13	0	+
-chrXI	518578	518579	chrXI-6	0	+
-chrXV	795462	795463	chrXV-14	0	+
-chrXIII	10172	10173	chrXIII-8	0	+
-chrVII	7395	7396	chrVII-9	0	+
-chrXIII	263173	263174	chrXIII-14	0	+
-chrXIV	662416	662417	chrXIV-5	0	+
-chrV	284717	284718	chrV-5	0	+
-chrV	126264	126265	chrV-6	0	+
-chrXII	757326	757327	chrXII-37	0	+
-chrX	294675	294676	chrX-6	0	+
-chrXII	950806	950807	chrXII-26	0	+
-chrVIII	48357	48358	chrVIII-7	0	+
-chrXIV	652193	652194	chrXIV-9	0	+
-chrII	692059	692060	chrII-9	0	+
-chrXIII	653597	653598	chrXIII-12	0	+
-chrXVI	214874	214875	chrXVI-14	0	+
-chrXV	638930	638931	chrXV-11	0	+
-chrXIII	472719	472720	chrXIII-13	0	+
-chrIX	254645	254646	chrIX-8	0	+
-chrXIV	441055	441056	chrXIV-8	0	+
-chrXV	521125	521126	chrXV-12	0	+
-chrXI	99825	99826	chrXI-7	0	+
-chrXVI	585992	585993	chrXVI-15	0	+
-chrV	42537	42538	chrV-7	0	+
-chrXIV	781325	781326	chrXIV-19	0	+
-chrIV	1345446	1345447	chrIV-23	0	+
-chrVII	384955	384956	chrVII-15	0	+
-chrVIII	255375	255376	chrVIII-9	0	+
-chrXIV	605544	605545	chrXIV-14	0	+
-chrXVI	404208	404209	chrXVI-20	0	+
-chrI	190259	190260	chrI-3	0	+
-chrII	555574	555575	chrII-8	0	+
-chrXII	371153	371154	chrXII-30	0	+
-chrXII	660271	660272	chrXII-31	0	+
-chrXIII	287583	287584	chrXIII-16	0	+
-chrX	278908	278909	chrX-7	0	+
-chrVI	142409	142410	chrVI-9	0	+
-chrXV	109853	109854	chrXV-21	0	+
-chrVII	812185	812186	chrVII-20	0	+
-chrIV	551135	551136	chrIV-21	0	+
-chrXV	882474	882475	chrXV-17	0	+
-chrIII	85691	85692	chrIII-9	0	+
-chrIV	368749	368750	chrIV-20	0	+
-chrII	33985	33986	chrII-15	0	+
-chrXI	615140	615141	chrXI-9	0	+
-chrXII	941958	941959	chrXII-38	0	+
-chrXI	68140	68141	chrXI-10	0	+
-chrX	639525	639526	chrX-10	0	+
-chrV	140914	140915	chrV-18	0	+
-chrXIII	915310	915311	chrXIII-21	0	+

scripts/data/reprocessed_mahendrawada_results/peaks/ADF1xstandard/A/ADF1xstandard_A_annotatePeaks.err

@@ -1,46 +0,0 @@
-
-	Using Custom Genome
-	Peak file = results/peaks/ADF1xstandard/A/ADF1xstandard_A_peaks.txt
-	Genome = S288C_reference_sequence_R64-5-1_20240529_chr_normalized.fa
-	Organism = unknown
-	Custom annotation GTF file: /ref/mblab/data/yeast_data/reprocess_mahendrawada/mahendrawada_slurm_pipeline/sacCer3.ensGene.gtf (using transcript_id)
-	Peak/BED file conversion summary:
-		BED/Header formatted lines: 0
-		peakfile formatted lines: 9
-		Duplicated Peak IDs: 0
-
-	Peak File Statistics:
-		Total Peaks: 9
-		Redundant Peak IDs: 0
-		Peaks lacking information: 0 (need at least 5 columns per peak)
-		Peaks with misformatted coordinates: 0 (should be integer)
-		Peaks with misformatted strand: 0 (should be either +/- or 0/1)
-
-	Peak file looks good!
-
-	Reading Positions...
-	-----------------------
-	offset=0
-	Finding Closest TSS...
-	Processing custom annotation file...
-	Features that will be considered:
-		exon
-
-	7507 lines contained useful feature information
-	Parsing GTF to make an annotation table from attributes...
-	Features that will be considered:
-		exon
-
-	7507 lines contained useful feature information
-assignGenomeAnnotation: error while loading shared libraries: libstdc++.so.6: cannot open shared object file: No such file or directory
-	Could not find basic annotation file (0.939694546236755.2.tmp)
-	Features that will be considered:
-		exon
-
-	7507 lines contained useful feature information
-assignGenomeAnnotation: error while loading shared libraries: libstdc++.so.6: cannot open shared object file: No such file or directory
-	Counting Tags in Peaks from each directory...
-	Organism: unknown
-	Outputing Annotation File...
-	Done annotating peaks file
-