Datasets:

JimHue
/

EHRSQL_PostgreSQL_data

license: cc-by-4.0
task_categories:
  - table-question-answering
  - question-answering
language:
  - en
tags:
  - ehrsql
  - electronic-health-records
  - sql
  - postgresql
  - sqlite
pretty_name: EHRSQL PostgreSQL Artifacts

EHRSQL PostgreSQL Artifacts

This dataset repository hosts database artifacts generated for the companion GitHub repository:

https://github.com/Jensen-JinhuiLiu/EHRSQL_PostgreSQL

Files

eicu.sqlite: original benchmark SQLite database artifact used for eICU.
mimic_iii.sqlite: original benchmark SQLite database artifact used for MIMIC-III.
postgres_import/eicu/csv/: CSV exports for loading the eICU PostgreSQL database.
postgres_import/mimic_iii/csv/: CSV exports for loading the MIMIC-III PostgreSQL database.

The companion GitHub repository contains the preprocessing scripts, PostgreSQL schema/load files, generated benchmark JSON files, and a checksum manifest for these artifacts.

Download

Download directly into the companion GitHub repository root:

hf download JimHue/EHRSQL_PostgreSQL_data --repo-type dataset --local-dir .

Or clone this dataset repository separately:

git clone https://huggingface.co/datasets/JimHue/EHRSQL_PostgreSQL_data

Loading PostgreSQL

After downloading the artifacts into the GitHub repository root, follow:

postgres_import/README.md
postgres_import/create_databases.sql
postgres_import/eicu/schema_no_fk.sql
postgres_import/eicu/load_data.sql
postgres_import/mimic_iii/schema_no_fk.sql
postgres_import/mimic_iii/load_data.sql

Attribution

These artifacts are derived from the EHRSQL benchmark:

EHRSQL: A Practical Text-to-SQL Benchmark for Electronic Health Records https://github.com/glee4810/EHRSQL