| --- |
| license: cc-by-4.0 |
| task_categories: |
| - table-question-answering |
| - question-answering |
| language: |
| - en |
| tags: |
| - ehrsql |
| - electronic-health-records |
| - sql |
| - postgresql |
| - sqlite |
| pretty_name: EHRSQL PostgreSQL Artifacts |
| --- |
| |
| # EHRSQL PostgreSQL Artifacts |
|
|
| This dataset repository hosts database artifacts generated for the companion |
| GitHub repository: |
|
|
| https://github.com/Jensen-JinhuiLiu/EHRSQL_PostgreSQL |
| |
| ## Files |
| |
| - `eicu.sqlite`: original benchmark SQLite database artifact used for eICU. |
| - `mimic_iii.sqlite`: original benchmark SQLite database artifact used for MIMIC-III. |
| - `postgres_import/eicu/csv/`: CSV exports for loading the eICU PostgreSQL database. |
| - `postgres_import/mimic_iii/csv/`: CSV exports for loading the MIMIC-III PostgreSQL database. |
|
|
| The companion GitHub repository contains the preprocessing scripts, |
| PostgreSQL schema/load files, generated benchmark JSON files, and a checksum |
| manifest for these artifacts. |
|
|
| ## Download |
|
|
| Download directly into the companion GitHub repository root: |
|
|
| ```bash |
| hf download JimHue/EHRSQL_PostgreSQL_data --repo-type dataset --local-dir . |
| ``` |
|
|
| Or clone this dataset repository separately: |
|
|
| ```bash |
| git clone https://huggingface.co/datasets/JimHue/EHRSQL_PostgreSQL_data |
| ``` |
|
|
| ## Loading PostgreSQL |
|
|
| After downloading the artifacts into the GitHub repository root, follow: |
|
|
| - `postgres_import/README.md` |
| - `postgres_import/create_databases.sql` |
| - `postgres_import/eicu/schema_no_fk.sql` |
| - `postgres_import/eicu/load_data.sql` |
| - `postgres_import/mimic_iii/schema_no_fk.sql` |
| - `postgres_import/mimic_iii/load_data.sql` |
|
|
| ## Attribution |
|
|
| These artifacts are derived from the EHRSQL benchmark: |
|
|
| EHRSQL: A Practical Text-to-SQL Benchmark for Electronic Health Records |
| https://github.com/glee4810/EHRSQL |
|
|
