initial_data/UPLOAD_SCOPE.md

Server initial-data upload scope

Source: /root/autodl-tmp/bio/ on connect.cqa1.seetacloud.com.

This package contains the server-side initial/source resources that were not already present in the GraphResidual dataset repository:

• top-level ClinVar, Reactome, UniProt, PTM, GTEx, MC3, and final ClinVar tables;
• brca_tcga_pan_can_atlas_2018/ source molecular and clinical tables;
• clinvar_strict_rebuild_v1/ graph inputs, nodes, edges, mappings, splits, provenance tables, and removal ledgers;
• clinvar_strict_rebuild_audit/ source manifests and audit tables;
• inductive_graph_residual_extension/ inductive graph datasets, splits, feature inventories, and contracts;
• retained raw-download copies under data_raw_download/, data_raw_partial/, and data_raw_scp/.

Excluded from this upload: images and figures, logs, caches, Python bytecode, code snapshots, model checkpoints, embeddings, predictions, and experiment- only output directories. Empty disease-specific directories were not created in the repository because they contain no files.