RESTORE.md

HiReT / Clinical-Reasoning backup — restore instructions

What this is

One AES-256 encrypted 7z archive, split into 61 volumes of ~5 GB each (40 GB volumes could not be uploaded reliably because the build container has a 2 GiB memory cap):

hitraj_backup_20260929.7z.001 ... .061

Archive totals: 444,062 files, 7,249 folders, 325.6 GB uncompressed. Everything was packed relative to /root, so extracting inside /root restores the original absolute paths:

/root/autodl-tmp/Clinical_Reasoning/...        (code, experiments, caches, Datasets, HF_Data)
/root/autodl-tmp/ClinicalReasoning-ICLR/...    (ICLR paper source and figures)
/root/autodl-tmp/backup_meta/...               (env exports, system info)

The passphrase is NOT stored in this archive or in the repository. Keep it in a password manager and in one offline copy; without it the backup cannot be opened.

Restore

1. Download ALL 61 volumes plus this file and the checksum file into one folder.

2. Verify volume integrity:

   sha256sum -c hitraj_backup_20260929.7z.volumes.sha256
   

3. Optional: rebuild the single-file archive exactly as it was created:

   cat hitraj_backup_20260929.7z.0* > hitraj_backup_20260929.7z
   

4. Extract (one command; all volumes are read automatically):

   cd /root && 7z x /path/to/hitraj_backup_20260929.7z.001
   

5. Rebuild the Python environment (do not copy the old conda directory):

   /root/miniconda3/bin/conda env create -f /root/autodl-tmp/backup_meta/env_llama-fac-wxr.yml
   # or: pip install -r /root/autodl-tmp/backup_meta/pip_freeze.txt
   

Not included (rebuildable or junk)

• install_tmp/ and pip_cache/ (figure tooling and pip cache, ~7.6 GB)
• pycache, .lock, vscode-.sock, torchinductor_root, .ipynb_checkpoints
• /root/miniconda3 itself (rebuild from env_llama-fac-wxr.yml)

Notes

• The 6-class and LOS embedding caches ARE included (rebuilding them costs roughly 12-20 h of GPU time). Cache fingerprints live in each cache directory manifest.json.
• Datasets/, per-sample predictions and caches are MIMIC-IV derived: keep repository access restricted and keep the passphrase private even though the archive is encrypted.
• Historical configs use absolute paths; keep the /root/autodl-tmp layout.