| # HiReT / Clinical-Reasoning backup — restore instructions |
|
|
| ## What this is |
| One AES-256 encrypted 7z archive, split into **61 volumes of ~5 GB each** |
| (40 GB volumes could not be uploaded reliably because the build container has a |
| 2 GiB memory cap): |
|
|
| hitraj_backup_20260929.7z.001 ... .061 |
| |
| Archive totals: 444,062 files, 7,249 folders, 325.6 GB uncompressed. |
| Everything was packed relative to `/root`, so extracting inside `/root` |
| restores the original absolute paths: |
|
|
| /root/autodl-tmp/Clinical_Reasoning/... (code, experiments, caches, Datasets, HF_Data) |
| /root/autodl-tmp/ClinicalReasoning-ICLR/... (ICLR paper source and figures) |
| /root/autodl-tmp/backup_meta/... (env exports, system info) |
| |
| The passphrase is NOT stored in this archive or in the repository. Keep it in a |
| password manager and in one offline copy; without it the backup cannot be opened. |
|
|
| ## Restore |
| 1. Download ALL 61 volumes plus this file and the checksum file into one folder. |
| 2. Verify volume integrity: |
|
|
| sha256sum -c hitraj_backup_20260929.7z.volumes.sha256 |
| |
| 3. Optional: rebuild the single-file archive exactly as it was created: |
|
|
| cat hitraj_backup_20260929.7z.0* > hitraj_backup_20260929.7z |
| |
| 4. Extract (one command; all volumes are read automatically): |
|
|
| cd /root && 7z x /path/to/hitraj_backup_20260929.7z.001 |
| |
| 5. Rebuild the Python environment (do not copy the old conda directory): |
|
|
| /root/miniconda3/bin/conda env create -f /root/autodl-tmp/backup_meta/env_llama-fac-wxr.yml |
| # or: pip install -r /root/autodl-tmp/backup_meta/pip_freeze.txt |
| |
| ## Not included (rebuildable or junk) |
| - install_tmp/ and pip_cache/ (figure tooling and pip cache, ~7.6 GB) |
| - __pycache__, *.lock, vscode-*.sock, torchinductor_root, .ipynb_checkpoints |
| - /root/miniconda3 itself (rebuild from env_llama-fac-wxr.yml) |
| |
| ## Notes |
| - The 6-class and LOS embedding caches ARE included (rebuilding them costs roughly |
| 12-20 h of GPU time). Cache fingerprints live in each cache directory manifest.json. |
| - Datasets/, per-sample predictions and caches are MIMIC-IV derived: keep repository |
| access restricted and keep the passphrase private even though the archive is encrypted. |
| - Historical configs use absolute paths; keep the /root/autodl-tmp layout. |
| |
