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Datasets:
Xu-AI4Science
/
occupancyflow-data

Tasks:
Tabular Regression
Modalities:
Text
Formats:
csv
Size:
< 1K
Tags:
protein-protein-interaction
binding-affinity
interactome
Libraries:
Datasets
Dask
Polars
License:
Dataset card Data Studio Files
xet
 Community
1
occupancyflow-data

Commit History

5 days ago

  1. Replace interactome_weights_esmc_300M.csv with the post-fix weights (formula fix 498f25b; identical to disease_modelling/submission/data/ in the code repository)

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  1. Upload README.md with huggingface_hub

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  2. Delete weights/interactome_weights_0708.csv with huggingface_hub

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  3. Delete interactome/predictions_esm2_650M_nM.csv with huggingface_hub

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  4. Upload README.md with huggingface_hub

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  5. Upload interactome/predictions_esmc_300M_nM.csv with huggingface_hub

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  1. Add esmc_300M competitive-binding weights (current best encoder)

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  2. Remove esm2_650M-based weights, superseded by esmc_300M

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  3. add modules/manifest.json

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  4. add modules/Thrombosis_edges.csv

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  5. add modules/Inflammation_edges.csv

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  6. add modules/HI2023_edges.csv

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  7. add modules/Fibrosis_edges.csv

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  8. add modules/Thrombosis_largest_matrix.csv.gz

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  9. add modules/PAH_largest_matrix.csv.gz

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  10. add modules/Inflammation_largest_matrix.csv.gz

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  11. add modules/HI2023_largest_matrix.csv.gz

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  12. add modules/Fibrosis_largest_matrix.csv.gz

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  13. add modules/COPD_largest_matrix.csv.gz

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  14. add modules/CAD_largest_matrix.csv.gz

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  15. add modules/Asthma_largest_matrix.csv.gz

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  16. add DepMap CRISPR gene effect (Chronos) matrix

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  17. add gnomAD v4.1.1 constraint metrics

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  18. add modules/manifest.json

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  19. add modules/gene_order.txt

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  20. add modules/COPD_edges.csv

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  21. add modules/CAD_edges.csv

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  22. add modules/PAH_edges.csv

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  23. add modules/Asthma_edges.csv

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  1. Upload chain_groups/train_8207_all.csv with huggingface_hub

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  2. Upload chain_groups/train_6659_no_overlap_s79_s90.csv with huggingface_hub

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  3. Upload chain_groups/test_s79_79_complexes.csv with huggingface_hub

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  4. Upload chain_groups/train_8207_all.csv with huggingface_hub

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  5. Upload chain_groups/train_6659_no_overlap_s79_s90.csv with huggingface_hub

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  1. Upload homology_audit/s90_identity_vs_training.csv with huggingface_hub

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  2. Upload homology_audit/s79_identity_vs_training.csv with huggingface_hub

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  3. Upload pdbbind_extension/homology_scores.csv with huggingface_hub

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  4. Upload pdbbind_extension/filtered_1371_pairs.csv with huggingface_hub

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  5. Upload pdbbind_extension/candidates_1388_pairs.csv with huggingface_hub

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  6. Upload negatome_check/predictions_intact_contradictions.csv with huggingface_hub

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  7. Upload negatome_check/per_protein_comparison.csv with huggingface_hub

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  8. Upload negatome_check/predictions_negatome_random.csv with huggingface_hub

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  9. Upload official_supplementary/PPAP_pdbbind90_test_chains.txt with huggingface_hub

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  10. Upload official_supplementary/proAffinity_test_set_1_chains.xls with huggingface_hub

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  11. Upload official_supplementary/PPI-Affinity_SI-File-4_test-set-2.csv with huggingface_hub

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  12. Upload official_supplementary/PPI-Affinity_SI-File-3_test-set-1.csv with huggingface_hub

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  13. Upload fixed_test_sets/test_s90_fixed.csv with huggingface_hub

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  14. Upload fixed_test_sets/test_s79_fixed.csv with huggingface_hub

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  15. Upload weights/interactome_weights_0630.xlsx with huggingface_hub

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  16. Upload weights/interactome_weights_0708.csv with huggingface_hub

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