| |
| """Compare every emitted citation pair with an independent SQL source projection.""" |
| import argparse |
| import json |
| from pathlib import Path |
|
|
| import duckdb |
|
|
|
|
| def main(): |
| parser = argparse.ArgumentParser(description=__doc__) |
| parser.add_argument("dataset_dir", type=Path) |
| parser.add_argument("--source-dir", type=Path, required=True, |
| help="Directory containing the pinned data/all parquet shards") |
| parser.add_argument("--temp-dir", type=Path, |
| help="Directory where DuckDB spills to disk") |
| args = parser.parse_args() |
| config = {"threads": 4} |
| if args.temp_dir: |
| config["temp_directory"] = str(args.temp_dir) |
| c = duckdb.connect(config=config) |
| c.read_parquet(str(args.source_dir / "*.parquet")).create_view("source") |
| sql = (args.dataset_dir / "provenance/independent_projection.sql").read_text() |
| c.execute("CREATE TEMP TABLE expected AS " + sql) |
| c.read_json(str(args.dataset_dir / "data/*.jsonl.gz"), |
| format="newline_delimited").create_view("records") |
| unexpected_constants = c.execute("""SELECT count(*) FROM records |
| WHERE enrichedValue.relatedIdentifierType IS DISTINCT FROM 'DOI' |
| OR enrichedValue.relationType IS DISTINCT FROM 'IsCitedBy'""").fetchone()[0] |
| c.execute("""CREATE TEMP TABLE actual AS |
| SELECT doi, enrichedValue.relatedIdentifier AS related_identifier FROM records""") |
| missing = c.execute("SELECT count(*) FROM (SELECT * FROM expected EXCEPT SELECT * FROM actual)").fetchone()[0] |
| extra = c.execute("SELECT count(*) FROM (SELECT * FROM actual EXCEPT SELECT * FROM expected)").fetchone()[0] |
| expected_count = c.execute("SELECT count(*) FROM expected").fetchone()[0] |
| actual_count = c.execute("SELECT count(*) FROM actual").fetchone()[0] |
| passed = missing == extra == unexpected_constants == 0 and expected_count == actual_count |
| result = {"status": "passed" if passed else "failed", |
| "independent_expected_citations": expected_count, |
| "actual_citations": actual_count, "missing_citations": missing, |
| "extra_citations": extra, |
| "records_with_unexpected_constants": unexpected_constants} |
| print(json.dumps(result, indent=2)) |
| assert passed |
| path = args.dataset_dir / "validation_report.json" |
| report = json.loads(path.read_text()) |
| report["independent_source_comparison"] = result |
| path.write_text(json.dumps(report, indent=2) + "\n") |
|
|
|
|
| if __name__ == "__main__": |
| main() |
|
|
