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Datasets:
pzweuj
/
SchemaBio_Bundle

Languages:
Chinese
Tags:
biology
genomics
medical
bioinformatics
variant-annotation
clinical
License:
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SchemaBio_Bundle

Commit History

5 days ago

  1. Upload hg19_default.bed

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  2. Upload hg38_default.bed

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  3. Upload Homo_sapiens.GRCh38.dna.primary_assembly.dict

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  4. Upload Homo_sapiens.GRCh37.dna.primary_assembly.dict

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    54d5715

12 days ago

  1. Add cnvkit reference cnn to schema_bundle

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    6f67d54

  2. Add excludeble bed to hg19/hg38 roots

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    74eb287

  3. Add minibwa index hg38/Homo_sapiens.GRCh38.dna.primary_assembly.fa.mbw

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  4. Add minibwa index hg19/Homo_sapiens.GRCh37.dna.primary_assembly.fa.mbw

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  5. Add minibwa index hg38/Homo_sapiens.GRCh38.dna.primary_assembly.fa.l2b

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  6. Add minibwa index hg19/Homo_sapiens.GRCh37.dna.primary_assembly.fa.l2b

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  7. Remove duplicate cnvkit target bed from schema_bundle

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    030becf

  8. download_bundle.py: include {genome}_default.bed

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  9. Add default beds; replace hg38 mskcc hotspot + tbi

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    2c611da

  10. download_bundle.py: match bwa/minibwa index by suffix

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    bbb4495

  11. Add bin/download_bundle.py

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  12. Restructure hg19/hg38 into bed/ and schema_bundle/ subfolders

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  1. Update README_EN.md

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  2. Update README.md

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  3. Delete hg38/homo_sapiens_merged_vep_115_GRCh38.tar.gz

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  4. Delete hg19/homo_sapiens_merged_vep_115_GRCh37.tar.gz

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  5. Upload hg38/homo_sapiens_merged_vep_116_GRCh38.tar.gz with huggingface_hub

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  1. Upload hg19/homo_sapiens_merged_vep_116_GRCh37.tar.gz with huggingface_hub

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  1. Upload hg38_excludeble.bed

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  2. Upload hg19_excludeble.bed

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  3. Delete hg19/bed

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  4. Delete hg19/schemabio_bundle

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  5. Create schemabio_bundle/test

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  6. Create bed/test

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  1. Upload 4 files

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  2. Upload 4 files

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  1. Upload Gencode.GRCh37.cnvkit.target.bed

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  2. Upload Gencode.GRCh38.cnvkit.target.bed

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  1. Upload BWA index files via Colab

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  2. Upload BWA index files via Colab

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  3. Upload tbi files via Colab

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  4. Upload tbi files via Colab

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  1. Upload hg38/hg38_EVOScore2.vcf.gz with huggingface_hub

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  2. Upload hg19/hg19_EVOScore2.vcf.gz with huggingface_hub

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  1. Upload Gencode.GRCh38.cnvkit.target.bed

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  2. Upload Gencode.GRCh37.cnvkit.target.bed

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  3. new readme

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  4. Upload hg19/hg19_pangolin.vcf.gz with huggingface_hub

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  1. Upload hg19/hg19_gnomad.v4.1.filtered.vcf.gz with huggingface_hub

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  2. Upload hg38/hg38_pangolin.vcf.gz with huggingface_hub

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  1. Delete hg38/Pangolin_hg38_snvs_masked.zip

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  2. Upload hg38/hg38_gnomad.v4.1.filtered.vcf.gz with huggingface_hub

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  3. Upload hg19/hg19_AlphaMissense.v3.vcf.gz with huggingface_hub

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  4. Rename hg38/AlphaMissense_v3_hg38.vcf.gz to hg38/hg38_AlphaMissense.v3.vcf.gz

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  5. Upload hg38/AlphaMissense_v3_hg38.vcf.gz with huggingface_hub

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  6. Upload hg38/hg38_mskcc_hotspot.v2.vcf.gz with huggingface_hub

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