Add mast3r_mesh_gpu.py: mast3r_mesh.py with TSDF fusion on CUDA:0 when available (used for I87X meshes)
Browse files
Bedroom1/MasterSlam1_ScanVideo1/mast3r_mesh_gpu.py
ADDED
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@@ -0,0 +1,541 @@
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|
| 1 |
+
#!/usr/bin/env python3
|
| 2 |
+
"""
|
| 3 |
+
mast3r_mesh.py - textured room mesh from a MASt3R-SLAM run, by TSDF fusion.
|
| 4 |
+
|
| 5 |
+
myenv/bin/python mast3r_mesh.py # run dir = this folder
|
| 6 |
+
myenv/bin/python mast3r_mesh.py --video ../ScanVideos/Video1.mp4 # texture from full-res video
|
| 7 |
+
myenv/bin/python mast3r_mesh.py RUN_DIR -o out.obj --voxel 0.008
|
| 8 |
+
|
| 9 |
+
Why not Poisson on scan.ply (ply2obj.py --mesh): an uncalibrated monocular SLAM cloud has
|
| 10 |
+
drift (walls in 2-3 offset layers), floaters and no reliable normals; Poisson turns that
|
| 11 |
+
into blobs, and colours averaged from points are blurry. This script does what RGB-D
|
| 12 |
+
mappers like RTAB-Map do instead:
|
| 13 |
+
|
| 14 |
+
1. Rebuild each keyframe's depth map. MASt3R-SLAM writes scan.ply keyframe by keyframe in
|
| 15 |
+
pixel (raster) order, with each point's colour copied from keyframes/<t>.png, so a
|
| 16 |
+
greedy colour match recovers the keyframe + pixel of every point.
|
| 17 |
+
2. Fit a pinhole camera per keyframe (scan.txt pose + pixel <-> point), drop points that
|
| 18 |
+
don't reproject (colour coincidences) and flying pixels at depth edges.
|
| 19 |
+
2b. Refine keyframe poses like RTAB-Map's graph optimisation: ICP between overlapping
|
| 20 |
+
keyframes, then a pose graph solve, so SLAM drift doesn't leave doubled surfaces.
|
| 21 |
+
3. Fuse all depth maps in a TSDF volume (Open3D) and extract the surface. Offset layers
|
| 22 |
+
closer than --trunc merge into one surface.
|
| 23 |
+
4. UV-unwrap (xatlas) and texture each texel from the camera images that see it
|
| 24 |
+
(z-tested against the mesh, weighted by viewing angle and distance). With --video the
|
| 25 |
+
full-resolution frames are used instead of the 512 px keyframes.
|
| 26 |
+
|
| 27 |
+
Inputs (in RUN_DIR): scan.ply, scan.txt, keyframes/scan/<timestamp>.png
|
| 28 |
+
Outputs: <out>.obj, <out>.mtl, <out>.png. Same coordinate frame as scan.ply.
|
| 29 |
+
Needs numpy, scipy, open3d, xatlas; --video also needs ffmpeg/ffprobe on PATH.
|
| 30 |
+
"""
|
| 31 |
+
import argparse
|
| 32 |
+
import os
|
| 33 |
+
import subprocess
|
| 34 |
+
import sys
|
| 35 |
+
|
| 36 |
+
import numpy as np
|
| 37 |
+
|
| 38 |
+
sys.path.insert(0, os.path.dirname(os.path.abspath(__file__)))
|
| 39 |
+
from ply2obj import read_ply, write_rows # noqa: E402
|
| 40 |
+
|
| 41 |
+
|
| 42 |
+
def log(*a):
|
| 43 |
+
print("[mast3r_mesh]", *a, file=sys.stderr, flush=True)
|
| 44 |
+
|
| 45 |
+
|
| 46 |
+
def quat_to_R(qx, qy, qz, qw):
|
| 47 |
+
n = np.sqrt(qx * qx + qy * qy + qz * qz + qw * qw)
|
| 48 |
+
x, y, z, w = qx / n, qy / n, qz / n, qw / n
|
| 49 |
+
return np.array([
|
| 50 |
+
[1 - 2 * (y * y + z * z), 2 * (x * y - z * w), 2 * (x * z + y * w)],
|
| 51 |
+
[2 * (x * y + z * w), 1 - 2 * (x * x + z * z), 2 * (y * z - x * w)],
|
| 52 |
+
[2 * (x * z - y * w), 2 * (y * z + x * w), 1 - 2 * (x * x + y * y)],
|
| 53 |
+
])
|
| 54 |
+
|
| 55 |
+
|
| 56 |
+
def read_rgb(path):
|
| 57 |
+
import open3d as o3d
|
| 58 |
+
a = np.asarray(o3d.io.read_image(path))
|
| 59 |
+
if a.ndim == 2:
|
| 60 |
+
a = np.repeat(a[..., None], 3, axis=2)
|
| 61 |
+
return np.ascontiguousarray(a[..., :3]).astype(np.uint8)
|
| 62 |
+
|
| 63 |
+
|
| 64 |
+
def pack(rgb):
|
| 65 |
+
rgb = rgb.astype(np.int64)
|
| 66 |
+
return (rgb[..., 0] << 16) | (rgb[..., 1] << 8) | rgb[..., 2]
|
| 67 |
+
|
| 68 |
+
|
| 69 |
+
# ----------------------------------------------------------------------------- 1. load + assign
|
| 70 |
+
def load_run(run_dir):
|
| 71 |
+
_, data, _ = read_ply(os.path.join(run_dir, "scan.ply"))
|
| 72 |
+
v = data["vertex"]
|
| 73 |
+
P = np.stack([v["x"], v["y"], v["z"]], 1).astype(np.float64)
|
| 74 |
+
rgb = np.stack([v["red"], v["green"], v["blue"]], 1)
|
| 75 |
+
if rgb.dtype != np.uint8:
|
| 76 |
+
raise ValueError("expected uchar colours in scan.ply (MASt3R-SLAM output)")
|
| 77 |
+
traj = np.loadtxt(os.path.join(run_dir, "scan.txt"), ndmin=2)
|
| 78 |
+
kdir = os.path.join(run_dir, "keyframes", "scan")
|
| 79 |
+
by_t = {float(f[:-4]): f for f in os.listdir(kdir) if f.endswith(".png")}
|
| 80 |
+
imgs = []
|
| 81 |
+
for t in traj[:, 0]:
|
| 82 |
+
name = by_t.get(float(t))
|
| 83 |
+
if name is None:
|
| 84 |
+
raise FileNotFoundError(f"no keyframe image for timestamp {t} in {kdir}")
|
| 85 |
+
imgs.append(read_rgb(os.path.join(kdir, name)))
|
| 86 |
+
log(f"{len(P):,} points, {len(imgs)} keyframes {imgs[0].shape[1]}x{imgs[0].shape[0]}")
|
| 87 |
+
return P, rgb, traj, imgs
|
| 88 |
+
|
| 89 |
+
|
| 90 |
+
def assign_pixels(rgb, imgs):
|
| 91 |
+
"""Greedy subsequence match of point colours against keyframe pixels in raster order."""
|
| 92 |
+
cols = pack(rgb).tolist()
|
| 93 |
+
n, p = len(cols), 0
|
| 94 |
+
pix = np.full(n, -1, np.int64)
|
| 95 |
+
kf = np.full(n, -1, np.int64)
|
| 96 |
+
for k, im in enumerate(imgs):
|
| 97 |
+
start = p
|
| 98 |
+
for i, c in enumerate(pack(im).reshape(-1).tolist()):
|
| 99 |
+
if p < n and cols[p] == c:
|
| 100 |
+
pix[p] = i
|
| 101 |
+
p += 1
|
| 102 |
+
kf[start:p] = k
|
| 103 |
+
if p != n:
|
| 104 |
+
raise ValueError(f"only {p:,} of {n:,} points matched keyframe pixels: scan.ply is not in "
|
| 105 |
+
"MASt3R-SLAM keyframe/raster order, or keyframes/ is from another run")
|
| 106 |
+
return pix, kf
|
| 107 |
+
|
| 108 |
+
|
| 109 |
+
# ----------------------------------------------------------------------------- 2. cameras + depth
|
| 110 |
+
def fit_camera(X, pix, W, thresh):
|
| 111 |
+
u, v, z = (pix % W).astype(np.float64), (pix // W).astype(np.float64), X[:, 2]
|
| 112 |
+
ok = z > 1e-6
|
| 113 |
+
for th in (50.0, 10.0, thresh):
|
| 114 |
+
a = X[ok, 0] / z[ok]
|
| 115 |
+
b = X[ok, 1] / z[ok]
|
| 116 |
+
fx, cx = np.linalg.lstsq(np.stack([a, np.ones_like(a)], 1), u[ok], rcond=None)[0]
|
| 117 |
+
fy, cy = np.linalg.lstsq(np.stack([b, np.ones_like(b)], 1), v[ok], rcond=None)[0]
|
| 118 |
+
with np.errstate(divide="ignore", invalid="ignore"):
|
| 119 |
+
r = np.hypot(fx * X[:, 0] / z + cx - u, fy * X[:, 1] / z + cy - v)
|
| 120 |
+
ok = (z > 1e-6) & (r < th)
|
| 121 |
+
return np.array([[fx, 0, cx], [0, fy, cy], [0, 0, 1]]), ok
|
| 122 |
+
|
| 123 |
+
|
| 124 |
+
def drop_depth_edges(D, rel):
|
| 125 |
+
pad = np.pad(D, 1, mode="edge")
|
| 126 |
+
bad = np.zeros(D.shape, bool)
|
| 127 |
+
for nb in (pad[:-2, 1:-1], pad[2:, 1:-1], pad[1:-1, :-2], pad[1:-1, 2:]):
|
| 128 |
+
bad |= (nb > 0) & (np.abs(nb - D) > rel * D)
|
| 129 |
+
D = D.copy()
|
| 130 |
+
D[bad] = 0
|
| 131 |
+
return D
|
| 132 |
+
|
| 133 |
+
|
| 134 |
+
def build_cameras(P, traj, imgs, pix, kf, reproj, edge):
|
| 135 |
+
H, W = imgs[0].shape[:2]
|
| 136 |
+
cams = []
|
| 137 |
+
for k in range(len(imgs)):
|
| 138 |
+
m = kf == k
|
| 139 |
+
R = quat_to_R(*traj[k, 4:8])
|
| 140 |
+
t = traj[k, 1:4]
|
| 141 |
+
X = (P[m] - t) @ R # world -> camera (scan.txt drops the Sim3 scale; depth stays in world units)
|
| 142 |
+
cam = {"R": R, "t": t, "img": imgs[k], "depth": np.zeros((H, W), np.float32)}
|
| 143 |
+
if m.sum() < 100:
|
| 144 |
+
log(f"keyframe {k}: only {m.sum()} points, skipped")
|
| 145 |
+
cam["K"] = None
|
| 146 |
+
cams.append(cam)
|
| 147 |
+
continue
|
| 148 |
+
K, ok = fit_camera(X, pix[m], W, reproj)
|
| 149 |
+
D = np.zeros(H * W, np.float32)
|
| 150 |
+
D[pix[m][ok]] = X[ok, 2]
|
| 151 |
+
D = drop_depth_edges(D.reshape(H, W), edge)
|
| 152 |
+
cam["K"], cam["depth"] = K, D
|
| 153 |
+
cams.append(cam)
|
| 154 |
+
if k % 10 == 0 or k == len(imgs) - 1:
|
| 155 |
+
log(f"keyframe {k}: f={K[0, 0]:.0f} c=({K[0, 2]:.0f},{K[1, 2]:.0f}), "
|
| 156 |
+
f"{int((D > 0).sum()):,}/{int(m.sum()):,} depth px kept")
|
| 157 |
+
return cams
|
| 158 |
+
|
| 159 |
+
|
| 160 |
+
# ----------------------------------------------------------------------------- 2b. pose refinement
|
| 161 |
+
def cam_to_world(c):
|
| 162 |
+
T = np.eye(4)
|
| 163 |
+
T[:3, :3] = c["R"]
|
| 164 |
+
T[:3, 3] = c["t"]
|
| 165 |
+
return T
|
| 166 |
+
|
| 167 |
+
|
| 168 |
+
def cam_cloud(c, voxel):
|
| 169 |
+
"""Keyframe depth map -> downsampled cloud with normals, in camera coordinates."""
|
| 170 |
+
import open3d as o3d
|
| 171 |
+
D, K = c["depth"], c["K"]
|
| 172 |
+
v, u = np.nonzero(D > 0)
|
| 173 |
+
z = D[v, u].astype(np.float64)
|
| 174 |
+
X = np.stack([(u - K[0, 2]) * z / K[0, 0], (v - K[1, 2]) * z / K[1, 1], z], 1)
|
| 175 |
+
pc = o3d.geometry.PointCloud(o3d.utility.Vector3dVector(X))
|
| 176 |
+
pc = pc.voxel_down_sample(voxel)
|
| 177 |
+
pc.estimate_normals(o3d.geometry.KDTreeSearchParamHybrid(radius=voxel * 3, max_nn=30))
|
| 178 |
+
pc.orient_normals_towards_camera_location(np.zeros(3))
|
| 179 |
+
return pc
|
| 180 |
+
|
| 181 |
+
|
| 182 |
+
def refine_poses(cams, voxel, max_dist, min_overlap):
|
| 183 |
+
"""What RTAB-Map does after odometry: register overlapping views (ICP), add those as
|
| 184 |
+
loop-closure constraints, and solve the pose graph so drift is spread out instead of
|
| 185 |
+
showing up as doubled walls. Depth maps stay as they are; only the keyframe poses move."""
|
| 186 |
+
import open3d as o3d
|
| 187 |
+
from scipy.spatial import cKDTree
|
| 188 |
+
reg = o3d.pipelines.registration
|
| 189 |
+
ids = [k for k, c in enumerate(cams) if c["K"] is not None]
|
| 190 |
+
clouds = {k: cam_cloud(cams[k], voxel) for k in ids}
|
| 191 |
+
T = {k: cam_to_world(cams[k]) for k in ids}
|
| 192 |
+
world = {k: np.asarray(clouds[k].points) @ T[k][:3, :3].T + T[k][:3, 3] for k in ids}
|
| 193 |
+
trees = {k: cKDTree(world[k]) for k in ids}
|
| 194 |
+
node = {k: i for i, k in enumerate(ids)}
|
| 195 |
+
graph = reg.PoseGraph()
|
| 196 |
+
for k in ids:
|
| 197 |
+
graph.nodes.append(reg.PoseGraphNode(T[k]))
|
| 198 |
+
|
| 199 |
+
n_odo = n_loop = n_fail = 0
|
| 200 |
+
for i, s in enumerate(ids):
|
| 201 |
+
for t in ids[i + 1:]:
|
| 202 |
+
consecutive = t == ids[i + 1]
|
| 203 |
+
d, _ = trees[t].query(world[s][::4], distance_upper_bound=max_dist)
|
| 204 |
+
if np.isfinite(d).mean() < min_overlap and not consecutive:
|
| 205 |
+
continue
|
| 206 |
+
init = np.linalg.inv(T[t]) @ T[s] # source (s) camera -> target (t) camera
|
| 207 |
+
tf = init
|
| 208 |
+
for md in (max_dist, max_dist / 2, max_dist / 4):
|
| 209 |
+
res = reg.registration_icp(
|
| 210 |
+
clouds[s], clouds[t], md, tf,
|
| 211 |
+
reg.TransformationEstimationPointToPlane(reg.TukeyLoss(k=md)),
|
| 212 |
+
reg.ICPConvergenceCriteria(max_iteration=30))
|
| 213 |
+
tf = res.transformation
|
| 214 |
+
ok = res.fitness >= min_overlap
|
| 215 |
+
if not ok:
|
| 216 |
+
if not consecutive:
|
| 217 |
+
continue
|
| 218 |
+
tf = init # keep the SLAM odometry so the graph stays connected
|
| 219 |
+
n_fail += 1
|
| 220 |
+
info = reg.get_information_matrix_from_point_clouds(clouds[s], clouds[t], max_dist / 4, tf)
|
| 221 |
+
graph.edges.append(reg.PoseGraphEdge(node[s], node[t], tf, info, uncertain=not consecutive))
|
| 222 |
+
n_odo += consecutive
|
| 223 |
+
n_loop += not consecutive
|
| 224 |
+
log(f"refine: {n_odo} odometry edges ({n_fail} kept SLAM pose, ICP failed), {n_loop} loop edges")
|
| 225 |
+
|
| 226 |
+
o3d.utility.set_verbosity_level(o3d.utility.VerbosityLevel.Error)
|
| 227 |
+
reg.global_optimization(
|
| 228 |
+
graph, reg.GlobalOptimizationLevenbergMarquardt(), reg.GlobalOptimizationConvergenceCriteria(),
|
| 229 |
+
reg.GlobalOptimizationOption(max_correspondence_distance=max_dist / 4,
|
| 230 |
+
edge_prune_threshold=0.25, reference_node=0))
|
| 231 |
+
moved = []
|
| 232 |
+
for k in ids:
|
| 233 |
+
P = np.asarray(graph.nodes[node[k]].pose)
|
| 234 |
+
moved.append(np.linalg.norm(P[:3, 3] - cams[k]["t"]))
|
| 235 |
+
cams[k]["R"], cams[k]["t"] = P[:3, :3].copy(), P[:3, 3].copy()
|
| 236 |
+
log(f"refine: keyframes moved median {np.median(moved):.3f}, max {np.max(moved):.3f} (scene units)")
|
| 237 |
+
|
| 238 |
+
|
| 239 |
+
# ----------------------------------------------------------------------------- 3. TSDF
|
| 240 |
+
def fuse(cams, voxel, trunc, min_weight):
|
| 241 |
+
# Tensor VoxelBlockGrid: the legacy ScalableTSDFVolume extracts an empty mesh in Open3D 0.20 (macOS arm64)
|
| 242 |
+
import open3d as o3d
|
| 243 |
+
core = o3d.core
|
| 244 |
+
DEV = core.Device("CUDA:0" if core.cuda.is_available() else "CPU:0") # GPU patch (server run)
|
| 245 |
+
log(f"tsdf device: {DEV}")
|
| 246 |
+
vbg = o3d.t.geometry.VoxelBlockGrid(
|
| 247 |
+
attr_names=("tsdf", "weight", "color"), attr_dtypes=(core.float32, core.float32, core.float32),
|
| 248 |
+
attr_channels=((1), (1), (3)), voxel_size=voxel, block_resolution=8, block_count=50000,
|
| 249 |
+
device=DEV)
|
| 250 |
+
for c in cams:
|
| 251 |
+
if c["K"] is None:
|
| 252 |
+
continue
|
| 253 |
+
K = core.Tensor(c["K"], core.float64)
|
| 254 |
+
E = core.Tensor(world_to_cam(c), core.float64)
|
| 255 |
+
depth = o3d.t.geometry.Image(core.Tensor(c["depth"])).to(DEV)
|
| 256 |
+
color = o3d.t.geometry.Image(core.Tensor(c["img"].astype(np.float32))).to(DEV)
|
| 257 |
+
blocks = vbg.compute_unique_block_coordinates(depth, K, E, 1.0, 1e6, trunc_voxel_multiplier=trunc / voxel)
|
| 258 |
+
vbg.integrate(blocks, depth, color, K, K, E, 1.0, 1e6, trunc_voxel_multiplier=trunc / voxel)
|
| 259 |
+
tm = vbg.extract_triangle_mesh(weight_threshold=min_weight)
|
| 260 |
+
mesh = tm.cpu().to_legacy()
|
| 261 |
+
if mesh.has_vertex_colors():
|
| 262 |
+
mesh.vertex_colors = o3d.utility.Vector3dVector(np.asarray(mesh.vertex_colors).clip(0, 255) / 255)
|
| 263 |
+
log(f"tsdf: {len(mesh.vertices):,} verts, {len(mesh.triangles):,} tris "
|
| 264 |
+
f"(voxel {voxel:.4g}, trunc {trunc:.4g}, min weight {min_weight})")
|
| 265 |
+
return mesh
|
| 266 |
+
|
| 267 |
+
|
| 268 |
+
def world_to_cam(c):
|
| 269 |
+
E = np.eye(4)
|
| 270 |
+
E[:3, :3] = c["R"].T
|
| 271 |
+
E[:3, 3] = -c["R"].T @ c["t"]
|
| 272 |
+
return E
|
| 273 |
+
|
| 274 |
+
|
| 275 |
+
def clean_mesh(mesh, min_cluster, tris):
|
| 276 |
+
tri_cluster, n_tri, _ = mesh.cluster_connected_triangles()
|
| 277 |
+
tri_cluster, n_tri = np.asarray(tri_cluster), np.asarray(n_tri)
|
| 278 |
+
small = n_tri[tri_cluster] < min_cluster * len(tri_cluster)
|
| 279 |
+
mesh.remove_triangles_by_mask(small)
|
| 280 |
+
mesh.remove_unreferenced_vertices()
|
| 281 |
+
log(f"clean: removed {int(small.sum()):,} tris in {int((n_tri < min_cluster * len(tri_cluster)).sum()):,} "
|
| 282 |
+
f"small pieces")
|
| 283 |
+
if len(mesh.triangles) > tris:
|
| 284 |
+
mesh = mesh.simplify_quadric_decimation(target_number_of_triangles=tris)
|
| 285 |
+
mesh.remove_degenerate_triangles()
|
| 286 |
+
mesh.remove_unreferenced_vertices()
|
| 287 |
+
mesh.compute_vertex_normals()
|
| 288 |
+
log(f"clean: {len(mesh.vertices):,} verts, {len(mesh.triangles):,} tris")
|
| 289 |
+
return mesh
|
| 290 |
+
|
| 291 |
+
|
| 292 |
+
# ----------------------------------------------------------------------------- 4. colour sources
|
| 293 |
+
def video_size(path):
|
| 294 |
+
out = subprocess.run(["ffprobe", "-v", "error", "-select_streams", "v:0", "-show_entries",
|
| 295 |
+
"stream=width,height:stream_side_data=rotation", "-of", "default=nw=1", path],
|
| 296 |
+
capture_output=True, text=True, check=True).stdout
|
| 297 |
+
kv = dict(l.split("=", 1) for l in out.split() if "=" in l)
|
| 298 |
+
w, h = int(kv["width"]), int(kv["height"])
|
| 299 |
+
if abs(int(float(kv.get("rotation", 0)))) % 180 == 90: # ffmpeg auto-rotates on decode
|
| 300 |
+
w, h = h, w
|
| 301 |
+
return w, h
|
| 302 |
+
|
| 303 |
+
|
| 304 |
+
def video_frames(path):
|
| 305 |
+
vw, vh = video_size(path)
|
| 306 |
+
proc = subprocess.Popen(["ffmpeg", "-v", "error", "-i", path, "-f", "rawvideo", "-pix_fmt", "rgb24", "-"],
|
| 307 |
+
stdout=subprocess.PIPE)
|
| 308 |
+
n = vw * vh * 3
|
| 309 |
+
while True:
|
| 310 |
+
buf = proc.stdout.read(n)
|
| 311 |
+
if len(buf) < n:
|
| 312 |
+
break
|
| 313 |
+
yield np.frombuffer(buf, np.uint8).reshape(vh, vw, 3)
|
| 314 |
+
proc.wait()
|
| 315 |
+
|
| 316 |
+
|
| 317 |
+
def attach_video(cams, path, max_err):
|
| 318 |
+
"""Find each keyframe's source frame (best match after MASt3R's resize + centre crop)."""
|
| 319 |
+
H, W = cams[0]["img"].shape[:2]
|
| 320 |
+
vw, vh = video_size(path)
|
| 321 |
+
s = min(vw / W, vh / H)
|
| 322 |
+
ox, oy = (vw - W * s) / 2, (vh - H * s) / 2
|
| 323 |
+
step = 4
|
| 324 |
+
ref = np.stack([c["img"][::step, ::step] for c in cams]).astype(np.float32)
|
| 325 |
+
ys = np.clip(((np.arange(0, H, step) + 0.5) * s - 0.5 + oy).round().astype(int), 0, vh - 1)
|
| 326 |
+
xs = np.clip(((np.arange(0, W, step) + 0.5) * s - 0.5 + ox).round().astype(int), 0, vw - 1)
|
| 327 |
+
best = np.full(len(cams), np.inf)
|
| 328 |
+
keep = [None] * len(cams)
|
| 329 |
+
log(f"video: {path} {vw}x{vh}, matching {len(cams)} keyframes (scale {s:.3g})")
|
| 330 |
+
for fr in video_frames(path):
|
| 331 |
+
# box-average around each sample so a 3.75x downscale compares like with like
|
| 332 |
+
r = max(int(s // 2), 0)
|
| 333 |
+
sm = np.zeros((len(ys), len(xs), 3), np.float32)
|
| 334 |
+
for dy in range(-r, r + 1):
|
| 335 |
+
for dx in range(-r, r + 1):
|
| 336 |
+
sm += fr[np.clip(ys + dy, 0, vh - 1)][:, np.clip(xs + dx, 0, vw - 1)]
|
| 337 |
+
sm /= (2 * r + 1) ** 2
|
| 338 |
+
err = np.abs(ref - sm).mean(axis=(1, 2, 3))
|
| 339 |
+
better = err < best
|
| 340 |
+
for k in np.nonzero(better)[0]:
|
| 341 |
+
best[k], keep[k] = err[k], fr.copy()
|
| 342 |
+
used = 0
|
| 343 |
+
for k, c in enumerate(cams):
|
| 344 |
+
if keep[k] is None or best[k] > max_err:
|
| 345 |
+
log(f"video: keyframe {k} best match error {best[k]:.1f} > {max_err}, using keyframe image")
|
| 346 |
+
continue
|
| 347 |
+
c["src"] = keep[k]
|
| 348 |
+
c["src_K"] = scale_K(c["K"], s, ox, oy) if c["K"] is not None else None
|
| 349 |
+
used += 1
|
| 350 |
+
log(f"video: {used}/{len(cams)} keyframes textured from video (match error median {np.median(best):.2f})")
|
| 351 |
+
|
| 352 |
+
|
| 353 |
+
def scale_K(K, s, ox, oy):
|
| 354 |
+
K2 = K.copy()
|
| 355 |
+
K2[0, 0] *= s
|
| 356 |
+
K2[1, 1] *= s
|
| 357 |
+
K2[0, 2] = (K[0, 2] + 0.5) * s - 0.5 + ox
|
| 358 |
+
K2[1, 2] = (K[1, 2] + 0.5) * s - 0.5 + oy
|
| 359 |
+
return K2
|
| 360 |
+
|
| 361 |
+
|
| 362 |
+
def bilinear(img, u, v):
|
| 363 |
+
h, w = img.shape[:2]
|
| 364 |
+
u = np.clip(u, 0, w - 1.001)
|
| 365 |
+
v = np.clip(v, 0, h - 1.001)
|
| 366 |
+
x0, y0 = u.astype(np.int64), v.astype(np.int64)
|
| 367 |
+
fx, fy = (u - x0)[:, None], (v - y0)[:, None]
|
| 368 |
+
a = img[y0, x0].astype(np.float32)
|
| 369 |
+
b = img[y0, x0 + 1].astype(np.float32)
|
| 370 |
+
c = img[y0 + 1, x0].astype(np.float32)
|
| 371 |
+
d = img[y0 + 1, x0 + 1].astype(np.float32)
|
| 372 |
+
return (a * (1 - fx) + b * fx) * (1 - fy) + (c * (1 - fx) + d * fx) * fy
|
| 373 |
+
|
| 374 |
+
|
| 375 |
+
def render_depths(mesh, cams):
|
| 376 |
+
"""Depth of the fused mesh seen from each keyframe camera, for occlusion tests."""
|
| 377 |
+
import open3d as o3d
|
| 378 |
+
scene = o3d.t.geometry.RaycastingScene()
|
| 379 |
+
scene.add_triangles(o3d.t.geometry.TriangleMesh.from_legacy(mesh))
|
| 380 |
+
for c in cams:
|
| 381 |
+
if c["K"] is None:
|
| 382 |
+
continue
|
| 383 |
+
H, W = c["depth"].shape
|
| 384 |
+
rays = scene.create_rays_pinhole(o3d.core.Tensor(c["K"]), o3d.core.Tensor(world_to_cam(c)), W, H)
|
| 385 |
+
hit = scene.cast_rays(rays)["t_hit"].numpy()
|
| 386 |
+
r = rays.numpy()
|
| 387 |
+
pts = r[..., :3] + r[..., 3:] * hit[..., None]
|
| 388 |
+
z = ((pts - c["t"]) @ c["R"])[..., 2]
|
| 389 |
+
z[~np.isfinite(hit)] = np.inf
|
| 390 |
+
c["zbuf"] = z.astype(np.float32)
|
| 391 |
+
|
| 392 |
+
|
| 393 |
+
def colour_texels(P, N, cams, voxel, power, chunk=1_000_000):
|
| 394 |
+
acc = np.zeros((len(P), 3), np.float32)
|
| 395 |
+
wsum = np.zeros(len(P), np.float32)
|
| 396 |
+
for c in cams:
|
| 397 |
+
if c["K"] is None:
|
| 398 |
+
continue
|
| 399 |
+
K, R, t, zb = c["K"], c["R"], c["t"], c["zbuf"]
|
| 400 |
+
H, W = zb.shape
|
| 401 |
+
src = c.get("src", c["img"])
|
| 402 |
+
sK = c.get("src_K", K) if "src" in c else K
|
| 403 |
+
border = 0.08 * W
|
| 404 |
+
for i in range(0, len(P), chunk):
|
| 405 |
+
p, n = P[i:i + chunk], N[i:i + chunk]
|
| 406 |
+
X = (p - t) @ R
|
| 407 |
+
z = X[:, 2]
|
| 408 |
+
with np.errstate(divide="ignore", invalid="ignore"):
|
| 409 |
+
u = K[0, 0] * X[:, 0] / z + K[0, 2]
|
| 410 |
+
v = K[1, 1] * X[:, 1] / z + K[1, 2]
|
| 411 |
+
inb = (z > 1e-6) & (u >= 0) & (u <= W - 1) & (v >= 0) & (v <= H - 1)
|
| 412 |
+
idx = np.nonzero(inb)[0]
|
| 413 |
+
if not len(idx):
|
| 414 |
+
continue
|
| 415 |
+
zr = zb[v[idx].round().astype(int), u[idx].round().astype(int)]
|
| 416 |
+
vis = np.abs(z[idx] - zr) < np.maximum(2 * voxel, 0.02 * z[idx])
|
| 417 |
+
idx = idx[vis]
|
| 418 |
+
if not len(idx):
|
| 419 |
+
continue
|
| 420 |
+
view = t - p[idx]
|
| 421 |
+
dist = np.linalg.norm(view, axis=1)
|
| 422 |
+
cos = np.einsum("ij,ij->i", n[idx], view) / np.maximum(dist, 1e-9)
|
| 423 |
+
edge = np.minimum.reduce([u[idx], W - 1 - u[idx], v[idx], H - 1 - v[idx]]) / border
|
| 424 |
+
w = (np.clip(cos, 0, 1) * np.clip(edge, 0, 1) / np.maximum(dist, 1e-6)) ** power
|
| 425 |
+
good = w > 0
|
| 426 |
+
idx, w = idx[good], w[good].astype(np.float32)
|
| 427 |
+
Xs = X[idx]
|
| 428 |
+
us = sK[0, 0] * Xs[:, 0] / Xs[:, 2] + sK[0, 2]
|
| 429 |
+
vs = sK[1, 1] * Xs[:, 1] / Xs[:, 2] + sK[1, 2]
|
| 430 |
+
acc[i + idx] += w[:, None] * bilinear(src, us, vs)
|
| 431 |
+
wsum[i + idx] += w
|
| 432 |
+
seen = wsum > 0
|
| 433 |
+
acc[seen] /= wsum[seen, None]
|
| 434 |
+
return acc, seen
|
| 435 |
+
|
| 436 |
+
|
| 437 |
+
# ----------------------------------------------------------------------------- textured OBJ
|
| 438 |
+
def write_textured(mesh, cams, dst, size, voxel, power):
|
| 439 |
+
import open3d as o3d
|
| 440 |
+
import xatlas
|
| 441 |
+
from scipy import ndimage
|
| 442 |
+
|
| 443 |
+
V = np.asarray(mesh.vertices)
|
| 444 |
+
T = np.asarray(mesh.triangles)
|
| 445 |
+
N = np.asarray(mesh.vertex_normals)
|
| 446 |
+
C = np.asarray(mesh.vertex_colors) if mesh.has_vertex_colors() else np.full_like(V, 0.5)
|
| 447 |
+
log(f"texture: unwrapping {len(T):,} tris with xatlas (slow: ~30 s per 60k tris)")
|
| 448 |
+
atlas = xatlas.Atlas()
|
| 449 |
+
atlas.add_mesh(V.astype(np.float32), T.astype(np.uint32))
|
| 450 |
+
chart = xatlas.ChartOptions()
|
| 451 |
+
chart.max_iterations = 1
|
| 452 |
+
pack_opt = xatlas.PackOptions()
|
| 453 |
+
pack_opt.resolution = size
|
| 454 |
+
pack_opt.padding = 4
|
| 455 |
+
atlas.generate(chart, pack_opt)
|
| 456 |
+
vmap, idx, uv = atlas[0]
|
| 457 |
+
if uv.max() > 1.5: # older xatlas wheels return texel units
|
| 458 |
+
uv = uv / np.array([atlas.width, atlas.height])
|
| 459 |
+
idx = idx.astype(np.int64)
|
| 460 |
+
|
| 461 |
+
tm = o3d.t.geometry.TriangleMesh()
|
| 462 |
+
tm.vertex.positions = o3d.core.Tensor(V[vmap].astype(np.float32))
|
| 463 |
+
tm.vertex.normals = o3d.core.Tensor(N[vmap].astype(np.float32))
|
| 464 |
+
tm.vertex.colors = o3d.core.Tensor(C[vmap].astype(np.float32))
|
| 465 |
+
tm.triangle.indices = o3d.core.Tensor(idx.astype(np.int32))
|
| 466 |
+
tm.triangle.texture_uvs = o3d.core.Tensor(uv[idx].astype(np.float32))
|
| 467 |
+
maps = tm.bake_vertex_attr_textures(size, {"positions", "normals", "colors"}, 8, -1e6, False)
|
| 468 |
+
pos, nrm, col = (maps[k].numpy() for k in ("positions", "normals", "colors"))
|
| 469 |
+
valid = pos[..., 0] > -1e5
|
| 470 |
+
P = pos[valid].astype(np.float64)
|
| 471 |
+
Nn = nrm[valid].astype(np.float64)
|
| 472 |
+
Nn /= np.maximum(np.linalg.norm(Nn, axis=1, keepdims=True), 1e-9)
|
| 473 |
+
log(f"texture: colouring {len(P):,} texels from {sum(c['K'] is not None for c in cams)} views")
|
| 474 |
+
render_depths(mesh, cams)
|
| 475 |
+
rgb, seen = colour_texels(P, Nn, cams, voxel, power)
|
| 476 |
+
rgb[~seen] = col[valid][~seen] * 255 # never seen unoccluded: fall back to TSDF colour
|
| 477 |
+
log(f"texture: {int(seen.sum()):,} texels from images, {int((~seen).sum()):,} from TSDF colour")
|
| 478 |
+
|
| 479 |
+
tex = np.zeros((size, size, 3), np.uint8)
|
| 480 |
+
tex[valid] = rgb.clip(0, 255).astype(np.uint8)
|
| 481 |
+
# bleed chart colours into the gutters so mipmapping doesn't pull in black seams
|
| 482 |
+
_, (iy, ix) = ndimage.distance_transform_edt(~valid, return_indices=True)
|
| 483 |
+
tex = tex[iy, ix]
|
| 484 |
+
|
| 485 |
+
base = os.path.splitext(dst)[0]
|
| 486 |
+
name = os.path.basename(base)
|
| 487 |
+
os.makedirs(os.path.dirname(os.path.abspath(dst)), exist_ok=True)
|
| 488 |
+
o3d.io.write_image(base + ".png", o3d.geometry.Image(np.ascontiguousarray(tex))) # row 0 = v 1, as OBJ expects
|
| 489 |
+
with open(base + ".mtl", "w") as m:
|
| 490 |
+
m.write(f"newmtl material0\nKd 1 1 1\nmap_Kd {name}.png\n")
|
| 491 |
+
with open(dst, "w", buffering=1 << 20) as fh:
|
| 492 |
+
fh.write(f"# textured TSDF mesh by mast3r_mesh.py\nmtllib {name}.mtl\n")
|
| 493 |
+
write_rows(fh, V[vmap], "v %.7g %.7g %.7g")
|
| 494 |
+
write_rows(fh, N[vmap], "vn %.6g %.6g %.6g")
|
| 495 |
+
write_rows(fh, uv, "vt %.6g %.6g")
|
| 496 |
+
fh.write("usemtl material0\n")
|
| 497 |
+
# v, vt and vn share one index (xatlas splits vertices), so each corner is i/i/i
|
| 498 |
+
write_rows(fh, np.repeat(idx + 1, 3, axis=1), "f %d/%d/%d %d/%d/%d %d/%d/%d")
|
| 499 |
+
log(f"done: {dst}, {base}.png ({size}x{size}), {len(vmap):,} verts, {len(idx):,} tris")
|
| 500 |
+
|
| 501 |
+
|
| 502 |
+
def main():
|
| 503 |
+
here = os.path.dirname(os.path.abspath(__file__))
|
| 504 |
+
ap = argparse.ArgumentParser(description="Textured TSDF mesh from a MASt3R-SLAM run")
|
| 505 |
+
ap.add_argument("run_dir", nargs="?", default=here, help="folder with scan.ply, scan.txt, keyframes/ (default: script folder)")
|
| 506 |
+
ap.add_argument("-o", "--output", help="default: <run_dir>/scan_tsdf.obj")
|
| 507 |
+
ap.add_argument("--video", help="source video of the run: texture from its full-res frames instead of 512 px keyframes")
|
| 508 |
+
ap.add_argument("--voxel", type=float, default=0, help="TSDF voxel size in scene units (default: 2x median pixel footprint)")
|
| 509 |
+
ap.add_argument("--trunc", type=float, default=0, help="TSDF truncation; offset layers closer than this merge (default 5x voxel)")
|
| 510 |
+
ap.add_argument("--min-weight", type=float, default=1.5, help="keep surface seen in at least this many keyframes (default 1.5, i.e. 2)")
|
| 511 |
+
ap.add_argument("--reproj", type=float, default=8.0, help="drop points that reproject worse than this many px (default 8)")
|
| 512 |
+
ap.add_argument("--no-refine", action="store_true", help="skip ICP + pose-graph refinement of keyframe poses")
|
| 513 |
+
ap.add_argument("--icp-dist", type=float, default=0, help="refine: max ICP correspondence distance (default 10x voxel)")
|
| 514 |
+
ap.add_argument("--edge", type=float, default=0.05, help="drop depth px differing from a neighbour by > this fraction (default 0.05)")
|
| 515 |
+
ap.add_argument("--min-cluster", type=float, default=0.002, help="remove mesh pieces smaller than this fraction of all tris (default 0.002)")
|
| 516 |
+
ap.add_argument("--tris", type=int, default=300000, help="max triangles after decimation (default 300000)")
|
| 517 |
+
ap.add_argument("--tex-size", type=int, default=4096, help="texture size in pixels (default 4096)")
|
| 518 |
+
ap.add_argument("--blend", type=float, default=4.0, help="view blending sharpness; higher = closer to best-view-only (default 4)")
|
| 519 |
+
ap.add_argument("--video-max-err", type=float, default=6.0, help="max mean abs error (0-255) for a video frame to count as a keyframe's source")
|
| 520 |
+
a = ap.parse_args()
|
| 521 |
+
out = a.output or os.path.join(a.run_dir, "scan_tsdf.obj")
|
| 522 |
+
|
| 523 |
+
P, rgb, traj, imgs = load_run(a.run_dir)
|
| 524 |
+
pix, kf = assign_pixels(rgb, imgs)
|
| 525 |
+
cams = build_cameras(P, traj, imgs, pix, kf, a.reproj, a.edge)
|
| 526 |
+
del P, rgb, pix, kf
|
| 527 |
+
|
| 528 |
+
zs = np.concatenate([c["depth"][c["depth"] > 0] / c["K"][0, 0] for c in cams if c["K"] is not None])
|
| 529 |
+
voxel = a.voxel or 2 * float(np.median(zs))
|
| 530 |
+
trunc = a.trunc or 5 * voxel
|
| 531 |
+
if not a.no_refine:
|
| 532 |
+
refine_poses(cams, 2 * voxel, a.icp_dist or 10 * voxel, 0.3)
|
| 533 |
+
mesh = fuse(cams, voxel, trunc, a.min_weight)
|
| 534 |
+
mesh = clean_mesh(mesh, a.min_cluster, a.tris)
|
| 535 |
+
if a.video:
|
| 536 |
+
attach_video(cams, a.video, a.video_max_err)
|
| 537 |
+
write_textured(mesh, cams, out, a.tex_size, voxel, a.blend)
|
| 538 |
+
|
| 539 |
+
|
| 540 |
+
if __name__ == "__main__":
|
| 541 |
+
main()
|