| { |
| "dev_config": { |
| "max_basal_cells": 10000, |
| "min_cells": 40, |
| "n_cells_request": 200, |
| "n_requests": 300 |
| }, |
| "release": "virtual-cell-zeroshot/v1", |
| "seed": 20260921, |
| "strata_config": { |
| "min_cells_measured": 20, |
| "strong_quantile": 0.6666666666666666, |
| "weak_quantile": 0.3333333333333333, |
| "z_threshold": 3.0 |
| }, |
| "target_overlap": { |
| "ctx_far": { |
| "n_never_seen": 81, |
| "n_seen_in_training": 219 |
| }, |
| "ctx_mid": { |
| "n_never_seen": 80, |
| "n_seen_in_training": 220 |
| }, |
| "ctx_near": { |
| "n_never_seen": 80, |
| "n_seen_in_training": 220 |
| } |
| }, |
| "test_config": { |
| "max_basal_cells": 10000, |
| "max_response_cells": 1000, |
| "min_cells_test_target": 40, |
| "min_cells_withheld": 20, |
| "n_cells_request": { |
| "10x_3p_v3": 200, |
| "10x_flex": 400, |
| "10x_gemx_5p": 200 |
| }, |
| "n_leaderboard": 100, |
| "n_requests": 300, |
| "n_withheld": 80 |
| }, |
| "test_contexts": { |
| "ctx_far": { |
| "chemistry": "10x_flex", |
| "n_basal_cells": 10000, |
| "n_genes": 18080, |
| "n_requests": 300, |
| "n_response_cells": 241887, |
| "n_withheld": 80, |
| "strata_counts": { |
| "conserved-strong": 104, |
| "context-variable": 136, |
| "unmeasured": 5, |
| "weak": 55 |
| }, |
| "tier": "far" |
| }, |
| "ctx_mid": { |
| "chemistry": "10x_3p_v3", |
| "n_basal_cells": 10000, |
| "n_genes": 8749, |
| "n_requests": 300, |
| "n_response_cells": 39693, |
| "n_withheld": 80, |
| "strata_counts": { |
| "conserved-strong": 143, |
| "context-variable": 141, |
| "weak": 16 |
| }, |
| "tier": "mid" |
| }, |
| "ctx_near": { |
| "chemistry": "10x_3p_v3", |
| "n_basal_cells": 4976, |
| "n_genes": 9624, |
| "n_requests": 300, |
| "n_response_cells": 22924, |
| "n_withheld": 80, |
| "strata_counts": { |
| "conserved-strong": 171, |
| "context-variable": 118, |
| "weak": 11 |
| }, |
| "tier": "near" |
| } |
| }, |
| "train_contexts": [ |
| "k562", |
| "jurkat", |
| "hct116", |
| "hek293t" |
| ], |
| "withheld_targets": { |
| "n": 80, |
| "note": "removed from every training context; identities are private" |
| } |
| } |
|
|
