React / preprocess /detect.py
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preprocess: add detect/curation/previews modules (curate CLI; ports verified bit-exact against published outputs)
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"""Detectors for unusable frames, and the clean-span complement.
Three failure modes are flagged per episode:
``intensity_spikes`` a GelSight reading far above anything contact produces —
usually the sensor being knocked or re-seated
``pose_teleports_*`` OptiTrack solving to the wrong marker set, which moves
the sensor implausibly far *and* rotates it implausibly
fast in a single frame
``ot_loss_*`` the tracker dropping out, which shows up as a run of
bit-identical poses rather than as missing samples
Thresholds are the ones validated against the published motherboard
``bad_frames.json`` (25/27 episodes bit-identical).
Previously split across ``detect_bad_intervals.py`` and ``build_segments.py``
in ``twm/scripts/``; the latter has since been archived, so this module is now
the only live copy of ``find_clean_segments``.
"""
from __future__ import annotations
import numpy as np
from .config import FPS
TAU_INTENSITY = 30.0
TAU_VELOCITY_MPS = 5.0
TAU_ANGULAR_RAD_PS = 15.0
FREEZE_THRESHOLD_S = 0.25
BUFFER_FRAMES = 3
EPS_POSE_BIT = 1e-7
def merge_intervals(events, gap: int = 1) -> list[list[int]]:
"""Merge inclusive ``(a, b)`` intervals that touch or overlap."""
if not events:
return []
ordered = sorted((int(a), int(b)) for a, b in events)
merged = [list(ordered[0])]
for a, b in ordered[1:]:
if a <= merged[-1][1] + gap:
merged[-1][1] = max(merged[-1][1], b)
else:
merged.append([a, b])
return merged
def pad_and_merge(events, T: int, buffer: int) -> list[list[int]]:
"""Pad each interval by ``±buffer``, clip to ``[0, T-1]``, then merge."""
if not events:
return []
return merge_intervals([(max(0, a - buffer), min(T - 1, b + buffer))
for a, b in events])
def detect_intensity_spikes(intens_l: np.ndarray, intens_r: np.ndarray,
T: int) -> list[list[int]]:
"""Frames where either sensor reads above ``TAU_INTENSITY``."""
above = (intens_l > TAU_INTENSITY) | (intens_r > TAU_INTENSITY)
return pad_and_merge([(int(i), int(i)) for i in np.where(above)[0]],
T, BUFFER_FRAMES)
def detect_pose_teleports(pose: np.ndarray, T: int) -> list[list[int]]:
"""Frames whose pose jump is implausible in translation *and* rotation.
The conjunction matters: ordinary fast motion trips the translational
threshold on its own, so requiring both is what separates a tracking error
from a quick reach.
"""
if T < 2:
return []
xyz, quat = pose[:, :3], pose[:, 3:]
qn = quat / np.maximum(np.linalg.norm(quat, axis=1, keepdims=True), 1e-12)
trans_vel = np.linalg.norm(np.diff(xyz, axis=0), axis=1) * FPS
dot = np.abs((qn[:-1] * qn[1:]).sum(axis=1)).clip(-1.0, 1.0)
ang_vel = 2.0 * np.arccos(dot) * FPS
flag = (trans_vel > TAU_VELOCITY_MPS) & (ang_vel > TAU_ANGULAR_RAD_PS)
return pad_and_merge([(int(i), int(i + 1)) for i in np.where(flag)[0]],
T, BUFFER_FRAMES)
def detect_pose_freezes(pose: np.ndarray, T: int) -> list[list[int]]:
"""Runs of bit-identical pose lasting at least ``FREEZE_THRESHOLD_S``.
OptiTrack repeats its last solution when it loses the marker set, so a
frozen pose is track loss rather than genuine stillness — a real hold still
jitters in the last decimal places.
Reported unpadded, matching the published ``bad_frames.json``.
"""
if T < 2:
return []
same = np.zeros(T, dtype=bool)
same[1:] = np.all(np.abs(np.diff(pose, axis=0)) < EPS_POSE_BIT, axis=1)
min_frames = int(round(FREEZE_THRESHOLD_S * FPS))
events, i = [], 1
while i < T:
if not same[i]:
i += 1
continue
j = i
while j < T and same[j]:
j += 1
# the run includes the anchor frame at i-1 that the copies match
run_a, run_b = i - 1, j - 1
if (run_b - run_a + 1) >= min_frames:
events.append((run_a, run_b))
i = j
return pad_and_merge(events, T, 0)
def find_clean_segments(T: int, bad_intervals) -> list[tuple[int, int]]:
"""Complement of the bad intervals: inclusive ``[a, b]`` clean spans."""
segments, prev_end = [], -1
for a, b in merge_intervals(bad_intervals):
if a > prev_end + 1:
segments.append((prev_end + 1, a - 1))
prev_end = max(prev_end, b)
if prev_end < T - 1:
segments.append((prev_end + 1, T - 1))
return segments
def thresholds() -> dict:
"""The detector settings, for recording alongside the results."""
return {
"tau_intensity": TAU_INTENSITY,
"tau_velocity_mps": TAU_VELOCITY_MPS,
"tau_angular_rad_per_s": TAU_ANGULAR_RAD_PS,
"freeze_threshold_s": FREEZE_THRESHOLD_S,
"buffer_frames": BUFFER_FRAMES,
}