| license: mit | |
| tags: | |
| - connectomics | |
| - electron-microscopy | |
| - 3d-segmentation | |
| - affinity-prediction | |
| - pytorch-connectomics | |
| - mednext | |
| # pytc/vEM — volume EM models | |
| Checkpoints for [PyTorch Connectomics](https://github.com/PytorchConnectomics/pytorch_connectomics), | |
| one folder per dataset. Each folder has its own README with the training recipe, the | |
| inference constraints that matter, and the measured results. | |
| | Folder | Dataset | Task | Files | | |
| |---|---|---|---| | |
| | [`j0126/`](j0126) | j0126 zebra finch, 9 × 9 × 20 nm | 3-channel voxel affinity | `affinity_scratch_48x96x96.ckpt` (247 MB) · `.onnx` (247 MB, opset 17) | | |
| ```bash | |
| hf download pytc/vEM j0126/affinity_scratch_48x96x96.ckpt --local-dir ckpt/ | |
| ``` | |
| > Renamed from `pytc/j0126` on 2026-09-08 and reorganised into per-dataset folders. The old | |
| > repo URL redirects, but a link that pinned `affinity_scratch_48x96x96.ckpt` at the repo | |
| > root needs the `j0126/` prefix added. | |