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Running
Running
| { | |
| "category": "structure_retrieval", | |
| "benchmarks": [ | |
| { | |
| "name": "PDB_TP53_STRUCTURE_AVAILABLE", | |
| "category": "structure_retrieval", | |
| "description": "Human p53 must resolve to at least one experimental PDB structure.", | |
| "input": { | |
| "accession": "P04637" | |
| }, | |
| "section": "alphafold", | |
| "expected_output": { | |
| "structure_available": true | |
| }, | |
| "tolerance": { | |
| "structure_available": 0 | |
| }, | |
| "ground_truth": "Multiple human p53 PDB entries exist (e.g. 4MZR, 1TUP).", | |
| "citation": "Berman H.M. et al. Nucleic Acids Res. 2000 (wwPDB); Cho Y. et al. Science 1994.", | |
| "source": "RCSB PDB", | |
| "stage": "curated", | |
| "difficulty": "easy", | |
| "version": 1 | |
| }, | |
| { | |
| "name": "ALPHAFOLD_TP53_AVAILABLE", | |
| "category": "structure_retrieval", | |
| "description": "AlphaFold DB must have a predicted structure for human p53 (AF-P04637-F1).", | |
| "input": { | |
| "accession": "P04637" | |
| }, | |
| "section": "alphafold", | |
| "expected_output": { | |
| "structure_available": true | |
| }, | |
| "tolerance": { | |
| "structure_available": 0 | |
| }, | |
| "ground_truth": "AlphaFold DB predicts p53: AF-P04637-F1-model_v4.", | |
| "citation": "Jumper J. et al. Nature 2021; Varadi M. et al. Nucleic Acids Res. 2022.", | |
| "source": "AlphaFold DB", | |
| "stage": "curated", | |
| "difficulty": "easy", | |
| "version": 1 | |
| }, | |
| { | |
| "name": "ALPHAFOLD_INSULIN_AVAILABLE", | |
| "category": "structure_retrieval", | |
| "description": "AlphaFold DB must have a predicted structure for human insulin (AF-P01308-F1).", | |
| "input": { | |
| "accession": "P01308" | |
| }, | |
| "section": "alphafold", | |
| "expected_output": { | |
| "structure_available": true | |
| }, | |
| "tolerance": { | |
| "structure_available": 0 | |
| }, | |
| "ground_truth": "AlphaFold DB predicts insulin: AF-P01308-F1-model_v4.", | |
| "citation": "Jumper J. et al. Nature 2021; Varadi M. et al. Nucleic Acids Res. 2022.", | |
| "source": "AlphaFold DB", | |
| "stage": "curated", | |
| "difficulty": "easy", | |
| "version": 1 | |
| } | |
| ] | |
| } | |