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| title: README |
| emoji: 🧬 |
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| colorTo: green |
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| # TabBioMed |
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| **TabBioMed: A Large-Scale Benchmark for Biomedical Tabular Learning** — 94 curated public biomedical tabular datasets with standardized train/validation/test splits or cross-validation folds. |
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| 🏆 **Live leaderboard coming soon.** |
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| Code: [github.com/AI-sandbox/TabBioMed](https://github.com/AI-sandbox/TabBioMed) |
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| ## Datasets |
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| ### Clinical & Healthcare (22) |
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| - [audiology](https://huggingface.co/datasets/TabBioMed/audiology) |
| - [blood-transfusion-service](https://huggingface.co/datasets/TabBioMed/blood-transfusion-service) |
| - [Cardiovascular-Disease-dataset](https://huggingface.co/datasets/TabBioMed/Cardiovascular-Disease-dataset) |
| - [CDC_Diabetes_Health_Indicators](https://huggingface.co/datasets/TabBioMed/CDC_Diabetes_Health_Indicators) |
| - [dermatology](https://huggingface.co/datasets/TabBioMed/dermatology) |
| - [Diabetes_UCI](https://huggingface.co/datasets/TabBioMed/Diabetes_UCI) |
| - [Diabetic_Retinopathy_Debrecen](https://huggingface.co/datasets/TabBioMed/Diabetic_Retinopathy_Debrecen) |
| - [HeartDisease_UCI](https://huggingface.co/datasets/TabBioMed/HeartDisease_UCI) |
| - [IACCD](https://huggingface.co/datasets/TabBioMed/IACCD) |
| - [ilpd_patient_data](https://huggingface.co/datasets/TabBioMed/ilpd_patient_data) |
| - [lymphography](https://huggingface.co/datasets/TabBioMed/lymphography) |
| - [maternal_health_risk](https://huggingface.co/datasets/TabBioMed/maternal_health_risk) |
| - [MUSIC](https://huggingface.co/datasets/TabBioMed/MUSIC) |
| - [National_Health_and_Nutrition_Health_Survey](https://huggingface.co/datasets/TabBioMed/National_Health_and_Nutrition_Health_Survey) |
| - [Parkinson_Speech](https://huggingface.co/datasets/TabBioMed/Parkinson_Speech) |
| - [PatientCare](https://huggingface.co/datasets/TabBioMed/PatientCare) |
| - [pima_diabetes](https://huggingface.co/datasets/TabBioMed/pima_diabetes) |
| - [sick](https://huggingface.co/datasets/TabBioMed/sick) |
| - [spectf](https://huggingface.co/datasets/TabBioMed/spectf) |
| - [thyroid](https://huggingface.co/datasets/TabBioMed/thyroid) |
| - [VitalDB](https://huggingface.co/datasets/TabBioMed/VitalDB) |
| - [wisconsin-breast-cancer](https://huggingface.co/datasets/TabBioMed/wisconsin-breast-cancer) |
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| ### Genomics (14) |
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| - [continental_1k](https://huggingface.co/datasets/TabBioMed/continental_1k) |
| - [continental_50k](https://huggingface.co/datasets/TabBioMed/continental_50k) |
| - [continental_50k_missing](https://huggingface.co/datasets/TabBioMed/continental_50k_missing) |
| - [coords_1k](https://huggingface.co/datasets/TabBioMed/coords_1k) |
| - [coords_50k](https://huggingface.co/datasets/TabBioMed/coords_50k) |
| - [dna](https://huggingface.co/datasets/TabBioMed/dna) |
| - [pca_1k](https://huggingface.co/datasets/TabBioMed/pca_1k) |
| - [pca_50k](https://huggingface.co/datasets/TabBioMed/pca_50k) |
| - [sexcheck_chrX_50](https://huggingface.co/datasets/TabBioMed/sexcheck_chrX_50) |
| - [sexcheck_chrX_500](https://huggingface.co/datasets/TabBioMed/sexcheck_chrX_500) |
| - [sexcheck_chrX_50k](https://huggingface.co/datasets/TabBioMed/sexcheck_chrX_50k) |
| - [subpop_1000_consec](https://huggingface.co/datasets/TabBioMed/subpop_1000_consec) |
| - [subpop_50k](https://huggingface.co/datasets/TabBioMed/subpop_50k) |
| - [vep_pathogenic_coding](https://huggingface.co/datasets/TabBioMed/vep_pathogenic_coding) |
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| ### Drug Discovery (13) |
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| - [bioresponse](https://huggingface.co/datasets/TabBioMed/bioresponse) |
| - [ESOL](https://huggingface.co/datasets/TabBioMed/ESOL) |
| - [HIV](https://huggingface.co/datasets/TabBioMed/HIV) |
| - [QM8_E1-CC2](https://huggingface.co/datasets/TabBioMed/QM8_E1-CC2) |
| - [QM8_f1-CC2](https://huggingface.co/datasets/TabBioMed/QM8_f1-CC2) |
| - [QM9_g298](https://huggingface.co/datasets/TabBioMed/QM9_g298) |
| - [QM9_gap](https://huggingface.co/datasets/TabBioMed/QM9_gap) |
| - [QSAR_biodegradation](https://huggingface.co/datasets/TabBioMed/QSAR_biodegradation) |
| - [SIDER_gastro](https://huggingface.co/datasets/TabBioMed/SIDER_gastro) |
| - [SIDER_nervous](https://huggingface.co/datasets/TabBioMed/SIDER_nervous) |
| - [Tox21_NRAhR](https://huggingface.co/datasets/TabBioMed/Tox21_NRAhR) |
| - [Tox21_NRER](https://huggingface.co/datasets/TabBioMed/Tox21_NRER) |
| - [Tox21_SRMMP](https://huggingface.co/datasets/TabBioMed/Tox21_SRMMP) |
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| ### Proteomics (11) |
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| - [avida_hil6_onehot](https://huggingface.co/datasets/TabBioMed/avida_hil6_onehot) |
| - [avida_htnfa_3mer](https://huggingface.co/datasets/TabBioMed/avida_htnfa_3mer) |
| - [avida_htnfa_esm2](https://huggingface.co/datasets/TabBioMed/avida_htnfa_esm2) |
| - [avida_htnfa_onehot](https://huggingface.co/datasets/TabBioMed/avida_htnfa_onehot) |
| - [avida_sarscov2_3mer](https://huggingface.co/datasets/TabBioMed/avida_sarscov2_3mer) |
| - [cptac_histology](https://huggingface.co/datasets/TabBioMed/cptac_histology) |
| - [ecoli](https://huggingface.co/datasets/TabBioMed/ecoli) |
| - [proteinea_solubility](https://huggingface.co/datasets/TabBioMed/proteinea_solubility) |
| - [true_betalactamase_unique](https://huggingface.co/datasets/TabBioMed/true_betalactamase_unique) |
| - [true_fluorescence](https://huggingface.co/datasets/TabBioMed/true_fluorescence) |
| - [true_melting_point](https://huggingface.co/datasets/TabBioMed/true_melting_point) |
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| ### Metabolomics (10) |
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| - [Gum1_s](https://huggingface.co/datasets/TabBioMed/Gum1_s) |
| - [MTBLS136](https://huggingface.co/datasets/TabBioMed/MTBLS136) |
| - [MTBLS161](https://huggingface.co/datasets/TabBioMed/MTBLS161) |
| - [MTBLS404](https://huggingface.co/datasets/TabBioMed/MTBLS404) |
| - [Noc_s](https://huggingface.co/datasets/TabBioMed/Noc_s) |
| - [PT-Mush21](https://huggingface.co/datasets/TabBioMed/PT-Mush21) |
| - [ST000369](https://huggingface.co/datasets/TabBioMed/ST000369) |
| - [ST000496](https://huggingface.co/datasets/TabBioMed/ST000496) |
| - [ST001000](https://huggingface.co/datasets/TabBioMed/ST001000) |
| - [ST001047](https://huggingface.co/datasets/TabBioMed/ST001047) |
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| ### Single-cell (10) |
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| - [hnoca_cells30](https://huggingface.co/datasets/TabBioMed/hnoca_cells30) |
| - [sc_gastrulation_stage](https://huggingface.co/datasets/TabBioMed/sc_gastrulation_stage) |
| - [sc_muraro_celltype](https://huggingface.co/datasets/TabBioMed/sc_muraro_celltype) |
| - [sc_muris_age](https://huggingface.co/datasets/TabBioMed/sc_muris_age) |
| - [sc_muris_celltype](https://huggingface.co/datasets/TabBioMed/sc_muris_celltype) |
| - [tahoe_batch_integration_14plates](https://huggingface.co/datasets/TabBioMed/tahoe_batch_integration_14plates) |
| - [tahoe_cell_name_1000](https://huggingface.co/datasets/TabBioMed/tahoe_cell_name_1000) |
| - [tahoe_cell_name_500](https://huggingface.co/datasets/TabBioMed/tahoe_cell_name_500) |
| - [tahoe_cell_name_5000](https://huggingface.co/datasets/TabBioMed/tahoe_cell_name_5000) |
| - [tahoe_g2m_score](https://huggingface.co/datasets/TabBioMed/tahoe_g2m_score) |
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| ### Transcriptomics (9) |
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| - [ALLAML](https://huggingface.co/datasets/TabBioMed/ALLAML) |
| - [CLL_SUB_111](https://huggingface.co/datasets/TabBioMed/CLL_SUB_111) |
| - [GLI_85](https://huggingface.co/datasets/TabBioMed/GLI_85) |
| - [GLIOMA](https://huggingface.co/datasets/TabBioMed/GLIOMA) |
| - [lung](https://huggingface.co/datasets/TabBioMed/lung) |
| - [metabric_grade](https://huggingface.co/datasets/TabBioMed/metabric_grade) |
| - [Prostate_GE](https://huggingface.co/datasets/TabBioMed/Prostate_GE) |
| - [SMK_CAN_187](https://huggingface.co/datasets/TabBioMed/SMK_CAN_187) |
| - [TOX_171](https://huggingface.co/datasets/TabBioMed/TOX_171) |
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| ### Systems Biology (5) |
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| - [MultiOmics_GS-BRCA](https://huggingface.co/datasets/TabBioMed/MultiOmics_GS-BRCA) |
| - [MultiOmics_GS-COAD](https://huggingface.co/datasets/TabBioMed/MultiOmics_GS-COAD) |
| - [MultiOmics_GS-GBM](https://huggingface.co/datasets/TabBioMed/MultiOmics_GS-GBM) |
| - [MultiOmics_GS-LGG](https://huggingface.co/datasets/TabBioMed/MultiOmics_GS-LGG) |
| - [MultiOmics_GS-OV](https://huggingface.co/datasets/TabBioMed/MultiOmics_GS-OV) |
