| license: apache-2.0 | |
| tags: | |
| - protein | |
| - structure | |
| - ProSST | |
| - rem2 | |
| - VenusREM2 | |
| # ProSST structure tokenizer (rem2 / VenusREM2) | |
| Structure-token assets used by [`rem2`](https://github.com/tyang816/VenusREM2) when you run `--model prosst` or `--model venusrem2`. | |
| On first use, rem2 downloads only the files it needs into `~/.cache/rem2/weights/prosst/static/`: | |
| | File | Used by | | |
| |------|---------| | |
| | `static/AE.pt` | All ProSST vocab sizes | | |
| | `static/{K}.joblib` | `--model prosst-{K}` and VenusREM2 members. K ∈ {20, 64, 128, 512, 1024, 2048, 4096} | | |
| VenusREM2's official ensemble uses K ∈ {20, 128, 512, 1024, 2048, 4096} (not 64). | |
| These files are the **local structure tokenizer** (`AE.pt` + k-means vocab). They are not the ProSST language-model weights. | |