Datasets:
Data licenses and attribution
This repository aggregates transformed records from multiple sources. It does not replace or override upstream terms.
| Files | Source | Terms / attribution |
|---|---|---|
processed/sciplex3_all.pt |
SciPlex3, GSE139944; harmonized by scPerturb | Cite Srivatsan et al. (2020) and scPerturb; retain the scPerturb Zenodo record's CC BY 4.0 attribution |
processed/cd34_all.pt |
GSE306429, ILD1-011 CD34+ | Cite GSE306429 and its associated publication; NCBI policies and submitter terms apply |
processed/frangieh_hvg.npz |
Frangieh et al. (2021), SCP1064; harmonized by scPerturb | Cite Frangieh et al. and scPerturb; retain the scPerturb Zenodo record's CC BY 4.0 attribution |
annotation/drug_annotation_master.csv |
SciPlex3, ChEMBL, PubChem and DrugCentral | Retain source attribution; ChEMBL portions are CC BY-SA 3.0 and DrugCentral portions are CC BY-SA 4.0 |
annotation/drugcentral_target_annotations.parquet |
DrugCentral | CC BY-SA 4.0; cite DrugCentral |
Source pages:
- SciPlex3 GEO: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE139944
- CD34+ GEO: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE306429
- Frangieh Broad SCP: https://singlecell.broadinstitute.org/single_cell/study/SCP1064
- scPerturb Zenodo: https://doi.org/10.5281/zenodo.13350497
- ChEMBL licensing: https://www.ebi.ac.uk/chembl/
- DrugCentral licensing: https://drugcentral.org/privacy
- PubChem usage information: https://pubchem.ncbi.nlm.nih.gov/docs/programmatic-access
PopRetrieve's original selection, normalization, packaging and documentation are provided for research reproducibility. No additional rights are granted over upstream data.